Citrus Sinensis ID: 025844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQIMKMSYS
Secondary Structure (PSIPRED)
ccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEEEcccHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccccccccEEcHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEccHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgyaqlvigpagsgkstycsslYRHCEtvrrtmhivnldpaaenfdypvaMDIRELISLEDVMeelglgpngglIYCMEHLEDNLDDWLAEELDnyldddylvfdcpgqielfthvpVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLElphvnilskmDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDeysmvsfmpldlRKESRLLSQIMKMSYS
Flexible Loop (DISEMBL)
mgyaqlvigpagsgkstyCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQIMKMSYS
Low Complexity Region (SEG)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWlaeeldnyldddylVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQIMKMSYS
Disordered region (IsUnstruct)
*****LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL****************
Disordered Region (DISOPRED)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQIMKMSYS
Disordered Region (DISEMBL)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQIMKMSYS
Disordered Region (DISPRO)
*GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQIMKMSY*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQIMKMSYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q6CQA6	271	GPN-loop GTPase 3 homolog	yes	no	0.947	0.863	0.543	7e-73
Q6BI59	274	GPN-loop GTPase 3 homolog	yes	no	0.951	0.857	0.543	2e-72
Q6ZM63	285	GPN-loop GTPase 3 OS=Dani	yes	no	0.943	0.817	0.537	2e-72
Q54NK8	285	GPN-loop GTPase 3 homolog	yes	no	0.943	0.817	0.521	4e-72
Q6FSS0	271	GPN-loop GTPase 3 homolog	yes	no	0.902	0.822	0.550	2e-71
Q4V7Z0	285	GPN-loop GTPase 3 OS=Xeno	N/A	no	0.931	0.807	0.544	4e-71
Q9D3W4	284	GPN-loop GTPase 3 OS=Mus	yes	no	0.943	0.820	0.541	5e-71
Q5A0W6	273	GPN-loop GTPase 3 homolog	N/A	no	0.947	0.857	0.539	5e-71
Q6R518	284	GPN-loop GTPase 3 OS=Ratt	yes	no	0.943	0.820	0.541	8e-71
Q06543	272	GPN-loop GTPase 3 homolog	yes	no	0.902	0.819	0.545	2e-70

>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2

 Score =  273 bits (699), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 132/243 (54%), Positives = 184/243 (75%), Gaps = 9/243 (3%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           LV+GPAG+GKST+C+++  H +++ R  HIVNLDPAAE   Y   +DIR+LISLEDVMEE
Sbjct: 7   LVLGPAGAGKSTFCNAIISHMQSIGRRAHIVNLDPAAEATKYEFTIDIRDLISLEDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
            GLGPNG LIYC E+L +NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL   V H
Sbjct: 67  FGLGPNGSLIYCFEYLLNNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPTIVRH 124

Query: 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NK 181
           L+++ NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+NILSK+DLV    NK
Sbjct: 125 LQNQLNFNLCATYLLEAPFVIDTSKFFSGALSAMSAMILLELPHINILSKLDLVKDSHNK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE---SRLL 238
           K ++ +LNP+   L  ++N+   P+F KLN+++  LVD++ MV F+PL+ +     S +L
Sbjct: 185 KALKKFLNPDPLLLTDKVNEETNPKFHKLNEAIANLVDDFGMVQFLPLEAKNPESVSTIL 244

Query: 239 SQI 241
           S I
Sbjct: 245 SYI 247

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6BI59|GPN3_DEBHA GPN-loop GTPase 3 homolog DEHA2G13222g OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2G13222g PE=3 SV=2

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/241 (54%), Positives = 182/241 (75%), Gaps = 6/241 (2%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           L +GPAG GKST+C+S+  H +++ R  HIVNLDPAAE  +Y   +DIR+LISL+DVMEE
Sbjct: 7   LALGPAGVGKSTFCNSIITHMQSIGRRAHIVNLDPAAEPSEYEFTIDIRDLISLQDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           + LGPNG LIYC E L +NL DWL EE+ ++ +D+YL+FDCPGQIEL+TH+PVL   V H
Sbjct: 67  MDLGPNGALIYCFEFLMNNL-DWLDEEIGDF-NDEYLIFDCPGQIELYTHIPVLPTIVRH 124

Query: 126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
           L+ S NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+NILSK+DL+ N   K
Sbjct: 125 LQTSLNFNLCATYLLEAPFVIDRSKFFSGALSAMSAMILLELPHINILSKIDLIKNEVSK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQI 241
           KE++ +LNP+   L +  +    P+FAKLNK++  LVD++ MV F+PLD  K+S  ++ I
Sbjct: 185 KELKKFLNPDPLLLNASSDNESNPKFAKLNKAIANLVDDFGMVQFLPLDCNKDSDSVATI 244

Query: 242 M 242
           +
Sbjct: 245 L 245

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6ZM63|GPN3_DANRE GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/240 (53%), Positives = 183/240 (76%), Gaps = 7/240 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYC+++  HC+ + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCATMLEHCQALNRSVQVVNLDPAAEHFEYPVIADIRELIQVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGLI+CME+  +N D WL E L  +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDDSLRFGPNGGLIFCMEYFSNNFD-WLEESL-GHVEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT- 179
             V+ L+   F VC V+L+DSQF+ +  KFISG MA+LSAMV LE+P VNI++KMDL++ 
Sbjct: 122 QLVEQLQQWEFRVCGVFLVDSQFMVETFKFISGVMAALSAMVMLEIPQVNIMTKMDLLSP 181

Query: 180 -NKKEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             KKEIE YL+P+   ++ + +  + + +F+KL K++  L+D+YSMV F+P D   E  +
Sbjct: 182 KAKKEIEKYLDPDMYSMMEDNSVALRSKKFSKLTKAICGLIDDYSMVRFLPFDRTDEEGI 241

Danio rerio (taxid: 7955)

>sp|Q54NK8|GPN3_DICDI GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3 PE=3 SV=1

 Score =  271 bits (692), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 188/238 (78%), Gaps = 5/238 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           + QLV+GPAGSGKSTYC ++ ++CE ++R++HIVNLDPAAE F+YPV++DI+ L+++++V
Sbjct: 4   HVQLVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNLDPAAEVFEYPVSVDIKNLVTVDEV 63

Query: 63  MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122
           M+EL  GPNGGL+Y ME+L +N+ DWL +EL +Y +DDYL+ DCPGQIEL++H+PV+R  
Sbjct: 64  MDELHYGPNGGLVYAMEYLIENM-DWLTDELGDY-EDDYLIIDCPGQIELYSHIPVMRIL 121

Query: 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK- 181
           VDHL+   ++VC+V+L+DSQFI D  KFISG +  LSAMV+LE+PH+N+L+K+D++    
Sbjct: 122 VDHLQQIGYSVCSVFLVDSQFILDNCKFISGALMCLSAMVRLEVPHINVLTKIDVLKTSD 181

Query: 182 --KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             KEIE +L+ E Q L+ ELN     ++ ++NK++  L++++S+V F+PLD+  +  L
Sbjct: 182 QYKEIEKFLDLEVQNLVEELNLETHDRYHRMNKAIGSLLEDFSLVGFVPLDITDQESL 239

Dictyostelium discoideum (taxid: 44689)

>sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1

 Score =  268 bits (686), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 179/229 (78%), Gaps = 6/229 (2%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           LV+GPAG+GKST+C+S+  H +T+ R  HIVNLDPAAE   Y   +DIR+LISL+DVMEE
Sbjct: 7   LVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPSKYEFTIDIRDLISLDDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           L LGPNG LIYC E+L  NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL N V H
Sbjct: 67  LDLGPNGALIYCFEYLMKNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPNIVRH 124

Query: 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
           L+ + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+D++ +   K
Sbjct: 125 LQGQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDMIKDEYGK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLD 230
           K+++ +LNP++  L +E +Q++ P+F  LN+ +  LVD++ MV F+PL+
Sbjct: 185 KKLKRFLNPDAMLLANEADQNLNPKFHHLNQCIANLVDDFGMVQFLPLE 233

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q4V7Z0|GPN3_XENLA GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 SV=1

 Score =  268 bits (684), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 180/237 (75%), Gaps = 7/237 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYCS++ +HCET+ R++ +VNLDPAAE+FDYPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCSTMVQHCETLNRSVQVVNLDPAAEHFDYPVLADIRELIEVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGL+YCME+  +N D WL   L  + +DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDRSLRFGPNGGLVYCMEYFANNFD-WLESCL-GHTEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             V+ L+   F VC V+L+DSQF+ +  KF+SG +A+LSAMV LE+P  NI++KMDL++ 
Sbjct: 122 YLVEQLQQWEFRVCGVFLVDSQFMVESFKFLSGVLAALSAMVSLEIPQCNIMTKMDLLSK 181

Query: 181 --KKEIEDYLNPESQFLLSEL-NQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234
             KKEIE +L+P+   ++ +  ++  + +F KL ++L  LVD+YSMV F+P D   E
Sbjct: 182 KAKKEIEKFLDPDMYSMIEDTPSRFKSTKFKKLTEALCGLVDDYSMVRFLPFDRSDE 238

Xenopus laevis (taxid: 8355)

>sp|Q9D3W4|GPN3_MOUSE GPN-loop GTPase 3 OS=Mus musculus GN=Gpn3 PE=2 SV=1

 Score =  267 bits (683), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 130/240 (54%), Positives = 179/240 (74%), Gaps = 7/240 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGL++CME+  +N D WL   L  +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDESLRFGPNGGLVFCMEYFANNFD-WLENCL-GHVEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAMV LE+P VNI++KMDL++ 
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMVSLEIPQVNIMTKMDLLSK 181

Query: 181 --KKEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             KKEIE +L+P+   L+ +    +  Q F KL K++  LVD+YSMV F+P D   E  +
Sbjct: 182 KAKKEIEKFLDPDMYSLIDDSTGDLRSQKFKKLTKAVCGLVDDYSMVRFLPYDQSDEESM 241

Mus musculus (taxid: 10090)

>sp|Q5A0W6|GPN3_CANAL GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.10642 PE=3 SV=2

 Score =  267 bits (683), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 130/241 (53%), Positives = 185/241 (76%), Gaps = 7/241 (2%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           LV+GPAG GKST+C+S+  + +++ R  HIVNLDPAA   +Y   +D+++LISL+DVMEE
Sbjct: 7   LVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           + LGPNGGL+YC E L +NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL   V H
Sbjct: 67  MELGPNGGLVYCFEFLLNNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPTIVRH 124

Query: 126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
           L+ S NFN+CA YLL++ FI D +KF SG ++++SAM+ LELPH+NILSK+DLV +   K
Sbjct: 125 LQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEYSK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQI 241
           K+++ +LNP+   LL++   ++ P+FAKL +S+  LVD++ MV F+PLD  K+SR +  I
Sbjct: 185 KQLKKFLNPDP-LLLAKQEDYINPKFAKLTQSIANLVDDFGMVQFLPLDCSKDSRSVETI 243

Query: 242 M 242
           +
Sbjct: 244 L 244

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6R518|GPN3_RAT GPN-loop GTPase 3 OS=Rattus norvegicus GN=Gpn3 PE=2 SV=1

 Score =  266 bits (681), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/240 (54%), Positives = 178/240 (74%), Gaps = 7/240 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGL++CME+  +N D WL   L  +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCL-GHVEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P VNI++KMDL++ 
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSK 181

Query: 181 --KKEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             KKEIE +L+P+   LL +    +  Q F KL K +  LVD+YSMV F+P D   E  +
Sbjct: 182 KAKKEIEKFLDPDMYSLLEDSTGDLRSQKFKKLTKPVCGLVDDYSMVRFLPYDQSDEESM 241

Rattus norvegicus (taxid: 10116)

>sp|Q06543|GPN3_YEAST GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR243W PE=1 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/231 (54%), Positives = 177/231 (76%), Gaps = 8/231 (3%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           +V+GPAG+GKST+C+S+  H +TV R  HIVNLDPAAE   Y   +DIR+LISL+DVMEE
Sbjct: 7   MVLGPAGAGKSTFCNSIISHMQTVGRRAHIVNLDPAAEATKYEFTIDIRDLISLDDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           + LGPNG LIYC E+L  NL DWL EE+ ++ +D+YL+FDCPGQIEL+TH+PVL N V H
Sbjct: 67  MDLGPNGALIYCFEYLLKNL-DWLDEEIGDF-NDEYLIFDCPGQIELYTHIPVLPNIVRH 124

Query: 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NK 181
           L  + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+DL+    NK
Sbjct: 125 LTQQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDLIKGDINK 184

Query: 182 KEIEDYLNPESQFLLSE--LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLD 230
           K+++ +LNP++  L+    +NQ   P+F +LN+ +  LVD++ MV F+PL+
Sbjct: 185 KKLKRFLNPDAMLLMETEGMNQASNPKFLRLNQCIANLVDDFGMVQFLPLE 235

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
225468099	268	PREDICTED: GPN-loop GTPase 3 homolog [Vi	0.975	0.899	0.881	1e-125
255567152	267	XPA-binding protein, putative [Ricinus c	0.975	0.902	0.868	1e-122
388500596	267	unknown [Lotus japonicus]	0.975	0.902	0.840	1e-119
388493224	267	unknown [Lotus japonicus]	0.975	0.902	0.836	1e-119
118489704	268	unknown [Populus trichocarpa x Populus d	0.975	0.899	0.852	1e-119
224131986	268	predicted protein [Populus trichocarpa]	0.975	0.899	0.852	1e-119
356526825	267	PREDICTED: GPN-loop GTPase 3-like [Glyci	0.975	0.902	0.836	1e-118
255638486	267	unknown [Glycine max]	0.975	0.902	0.831	1e-118
115452899	265	Os03g0337700 [Oryza sativa Japonica Grou	0.959	0.894	0.835	1e-118
357462187	267	GPN-loop GTPase-like protein [Medicago t	0.975	0.902	0.827	1e-117

>gi|225468099|ref|XP_002266090.1| PREDICTED: GPN-loop GTPase 3 homolog [Vitis vinifera] gi|296088830|emb|CBI38288.3| unnamed protein product [Vitis vinifera]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/244 (88%), Positives = 235/244 (96%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MG+AQLVIGPAGSGKSTYCSSLY+HCET+RRT+HIVNLDPAAE+FDYPVAMDIREL+SL+
Sbjct: 1   MGFAQLVIGPAGSGKSTYCSSLYQHCETMRRTIHIVNLDPAAESFDYPVAMDIRELVSLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLE+NLDDWL +ELDNYLDDDYLVFDCPGQIELF+HVP+LR
Sbjct: 61  DVMEELGLGPNGGLMYCMEHLEENLDDWLTDELDNYLDDDYLVFDCPGQIELFSHVPMLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFVDHLK +NFNVCAVYLLDSQF+TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVDHLKRKNFNVCAVYLLDSQFMTDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR---L 237
           K++IEDYLNPE +FLLSELNQ MAPQF KLNK+LIELVDEYSMVSF+PLDLRKES    +
Sbjct: 181 KRDIEDYLNPEPRFLLSELNQRMAPQFGKLNKALIELVDEYSMVSFLPLDLRKESSIRYI 240

Query: 238 LSQI 241
           LSQI
Sbjct: 241 LSQI 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567152|ref|XP_002524557.1| XPA-binding protein, putative [Ricinus communis] gi|223536110|gb|EEF37765.1| XPA-binding protein, putative [Ricinus communis]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/244 (86%), Positives = 232/244 (95%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY+HCETV R++HIVNLDPAAENFDYPV+MDIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRSIHIVNLDPAAENFDYPVSMDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCM+ LEDNLDDWL+EELDNY+DDDYLVFDCPGQIELF+HV VLR
Sbjct: 61  DVMEELGLGPNGALMYCMDELEDNLDDWLSEELDNYMDDDYLVFDCPGQIELFSHVSVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NFNVCAVYLLDSQFITDVTKFISGCMASLSAM+QLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKRKNFNVCAVYLLDSQFITDVTKFISGCMASLSAMIQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL--- 237
           KK+IEDYLNPES+ LLSELN+ MAPQF KLNK+LIELVDEYSMVSF+PLDLRKES +   
Sbjct: 181 KKDIEDYLNPESRVLLSELNKRMAPQFVKLNKALIELVDEYSMVSFVPLDLRKESSIQYV 240

Query: 238 LSQI 241
           L+QI
Sbjct: 241 LAQI 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500596|gb|AFK38364.1| unknown [Lotus japonicus]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/244 (84%), Positives = 230/244 (94%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSL++HCET RRT+H+VNLDPAAENFDYPVAMD+RELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLE+NLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEENLDDWLDEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HL+ +NFNVC VYLLDSQF+TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLQQKNFNVCVVYLLDSQFMTDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL--- 237
           KK++ D+L+PE  FLLSELNQ MAPQ+AKLNK+LIELV+ YSMVSF+PLDLRKE  +   
Sbjct: 181 KKDLGDFLDPEPTFLLSELNQRMAPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 238 LSQI 241
           L+QI
Sbjct: 241 LAQI 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493224|gb|AFK34678.1| unknown [Lotus japonicus]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/244 (83%), Positives = 230/244 (94%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSL++HCET RRT+H+VNLDPAAENFDYPVAMD+RELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCMEHLE+NLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61  DVMEELGLGPNGSLVYCMEHLEENLDDWLDEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HL+ +NFNVC VYLLDSQF+TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLQQKNFNVCVVYLLDSQFMTDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL--- 237
           KK+++D+L+PE  FLLSELNQ MAPQ+AKLNK+LIELV+ YSMVSF+PLDLRKE  +   
Sbjct: 181 KKDLDDFLDPEPTFLLSELNQRMAPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 238 LSQI 241
           L+QI
Sbjct: 241 LAQI 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489704|gb|ABK96653.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 225/244 (92%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLYRHCET  R++ IVNLDPAAE FDYPVAMDIRELI L+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETTGRSIQIVNLDPAAEQFDYPVAMDIRELICLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCME LEDNLDDWL +ELDNY+DDDYLVFDCPGQIELF+HVPVLR
Sbjct: 61  DVMEELGLGPNGALMYCMEELEDNLDDWLTDELDNYMDDDYLVFDCPGQIELFSHVPVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLKS+NFNVC VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKSKNFNVCVVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR---L 237
           K++I  YLNP+ Q LLSELNQ MAPQF KLNK+LI+LVD+YSMVSF+PLDLRKES    +
Sbjct: 181 KRDIGKYLNPQGQVLLSELNQRMAPQFFKLNKALIDLVDQYSMVSFVPLDLRKESSIQYI 240

Query: 238 LSQI 241
           LSQI
Sbjct: 241 LSQI 244

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131986|ref|XP_002321227.1| predicted protein [Populus trichocarpa] gi|222862000|gb|EEE99542.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 226/244 (92%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLYRHCET  R+++IVNLDPAAE FDYPVAMDIRELI L+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETAGRSINIVNLDPAAEQFDYPVAMDIRELICLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCME LEDNLDDWL +ELDNY+DDDYLVFDCPGQIELF+HVPVLR
Sbjct: 61  DVMEELGLGPNGALMYCMEELEDNLDDWLTDELDNYMDDDYLVFDCPGQIELFSHVPVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLKS+NFNVC VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKSKNFNVCVVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR---L 237
           K++I  YLNP+ Q LLSELNQ MAPQF KLNK+LI+LVD+YSMVSF+PLDLRKES    +
Sbjct: 181 KRDIGKYLNPQGQVLLSELNQRMAPQFFKLNKALIDLVDQYSMVSFVPLDLRKESSIQYI 240

Query: 238 LSQI 241
           LSQI
Sbjct: 241 LSQI 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526825|ref|XP_003532017.1| PREDICTED: GPN-loop GTPase 3-like [Glycine max]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/244 (83%), Positives = 226/244 (92%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY HC   RR++H+VNLDPAAENFDYPVAMDIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLEDNLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NF+VCAVYLLDSQF+TDVTKFISGCMA LSAMVQLELPHVNILSKMDLVT 
Sbjct: 121 NFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISGCMACLSAMVQLELPHVNILSKMDLVTK 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL--- 237
           KK++ED+L+PE  FLLSELNQ M PQ+AKLNK+LIELV+ YSMVSF+PLDLRKE  +   
Sbjct: 181 KKDLEDFLDPEPTFLLSELNQRMGPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 238 LSQI 241
           L+QI
Sbjct: 241 LAQI 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638486|gb|ACU19552.1| unknown [Glycine max]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/244 (83%), Positives = 225/244 (92%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY HC   RR++H+VNLDPAAENFDYPVAMDIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLEDNLDDWL EELDNYLDDDYLVFDCPGQIEL++H PVL+
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHAPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NF+VCAVYLLDSQF+TDVTKFISGCMA LSAMVQLELPHVNILSKMDLVT 
Sbjct: 121 NFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISGCMACLSAMVQLELPHVNILSKMDLVTK 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL--- 237
           KK++ED+L+PE  FLLSELNQ M PQ+AKLNK+LIELV+ YSMVSF+PLDLRKE  +   
Sbjct: 181 KKDLEDFLDPEPTFLLSELNQRMGPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 238 LSQI 241
           L+QI
Sbjct: 241 LAQI 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115452899|ref|NP_001050050.1| Os03g0337700 [Oryza sativa Japonica Group] gi|108708035|gb|ABF95830.1| expressed protein [Oryza sativa Japonica Group] gi|113548521|dbj|BAF11964.1| Os03g0337700 [Oryza sativa Japonica Group]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/237 (83%), Positives = 224/237 (94%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY+HCETV RT+H+VNLDPAAE+F YPV+ DIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELG+GPNGGLIYCMEHLEDNLDDWL E+LD YLDDDYLVFDCPGQIELFTHVPVLR
Sbjct: 61  DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NFNVCAVY LDSQF++DVTK+ISGCMASLSAM+QLELPH+NILSKMDLV N
Sbjct: 121 NFVEHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVAN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
           KK++E+YLNPE+Q LLS+LN+ MAP+F KLNKSL ELVD+YSMV+F+PLDLRKES +
Sbjct: 181 KKDVEEYLNPEAQVLLSQLNRQMAPKFGKLNKSLAELVDDYSMVNFIPLDLRKESSI 237

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462187|ref|XP_003601375.1| GPN-loop GTPase-like protein [Medicago truncatula] gi|355490423|gb|AES71626.1| GPN-loop GTPase-like protein [Medicago truncatula]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 228/244 (93%), Gaps = 3/244 (1%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY+HCETVRR++H++NLDPAAENFDYPVAMD+RELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVRRSIHVMNLDPAAENFDYPVAMDVRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLED+L+ WL EELDNYLDD+YLVFDCPGQIEL++HVPV R
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEDSLNGWLDEELDNYLDDEYLVFDCPGQIELYSHVPVFR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK RNFNVC VYLLDSQF+ DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKRRNFNVCVVYLLDSQFMVDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL--- 237
           KK++E++L+PE  FLLSELN+ MAPQ+AKLNKSLIELV  YSMVSF+PLDLRK+  +   
Sbjct: 181 KKDLEEFLDPEPTFLLSELNKRMAPQYAKLNKSLIELVSSYSMVSFIPLDLRKDKSIQYV 240

Query: 238 LSQI 241
           L+QI
Sbjct: 241 LAQI 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2135793	271	AT4G12790 [Arabidopsis thalian	0.975	0.889	0.737	5.9e-96
ZFIN|ZDB-GENE-040724-141	285	gpn3 "GPN-loop GTPase 3" [Dani	0.983	0.852	0.496	3.3e-63
MGI|MGI:1289326	284	Gpn3 "GPN-loop GTPase 3" [Mus	0.943	0.820	0.520	1.4e-62
DICTYBASE|DDB_G0285197	285	gpn3 "GPN-loop GTPase 3" [Dict	0.951	0.824	0.489	1.8e-62
RGD|1303034	284	Gpn3 "GPN-loop GTPase 3" [Ratt	0.943	0.820	0.520	1.8e-62
CGD|CAL0002280	273	orf19.3130 [Candida albicans (	0.947	0.857	0.510	3e-62
UNIPROTKB|Q5A0W6	273	CaO19.10642 "GPN-loop GTPase 3	0.947	0.857	0.510	3e-62
SGD|S000004233	272	GPN3 "Putative GTPase with a r	0.902	0.819	0.519	1e-61
UNIPROTKB|Q9UHW5	284	GPN3 "GPN-loop GTPase 3" [Homo	0.943	0.820	0.504	1.6e-61
UNIPROTKB|E1C8Z1	284	GPN3 "Uncharacterized protein"	0.943	0.820	0.504	2.1e-61

TAIR|locus:2135793 AT4G12790 [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 180/244 (73%), Positives = 208/244 (85%)

Query:     1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
             MGYAQLVIGPAGSGKSTYCSSLY HCET+ RTMH+VNLDPAAE F+YPVAMDIRELISLE
Sbjct:     1 MGYAQLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIRELISLE 60

Query:    61 DVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             DVME+L LGPNG L+YCME+LED+L DW              +FDCPGQIELFTHVPVL+
Sbjct:    61 DVMEDLKLGPNGALMYCMEYLEDSLHDWVDEELENYRDDDYLIFDCPGQIELFTHVPVLK 120

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             NFV+HLK +NFNVC VYLLDSQFITDVTKFISGCM+SL+AM+QLELPHVNILSKMDL+ +
Sbjct:   121 NFVEHLKQKNFNVCVVYLLDSQFITDVTKFISGCMSSLAAMIQLELPHVNILSKMDLLQD 180

Query:   181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL--- 237
             K  I+DYLNPE + LL+ELN+ M PQ+AKLNK+LIE+V EY MV+F+P++LRKE  +   
Sbjct:   181 KSNIDDYLNPEPRTLLAELNKRMGPQYAKLNKALIEMVGEYGMVNFIPINLRKEKSIQYV 240

Query:   238 LSQI 241
             LSQI
Sbjct:   241 LSQI 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040724-141 gpn3 "GPN-loop GTPase 3" [Danio rerio (taxid:7955)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 124/250 (49%), Positives = 177/250 (70%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYC+++  HC+ + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCATMLEHCQALNRSVQVVNLDPAAEHFEYPVIADIRELIQVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGLI+CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLIFCMEYFSNNFD-WLEESLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V+ L+   F VC V+L+DSQF+ +  KFISG MA+LSAMV LE+P VNI++KMDL++ 
Sbjct:   122 QLVEQLQQWEFRVCGVFLVDSQFMVETFKFISGVMAALSAMVMLEIPQVNIMTKMDLLSP 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             K  KEIE YL+P+   ++ + +  + + +F+KL K++  L+D+YSMV F+P D   E  +
Sbjct:   182 KAKKEIEKYLDPDMYSMMEDNSVALRSKKFSKLTKAICGLIDDYSMVRFLPFDRTDEEGI 241

Query:   238 LSQIMKMSYS 247
                +  + +S
Sbjct:   242 NIVLQHIDFS 251

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:1289326 Gpn3 "GPN-loop GTPase 3" [Mus musculus (taxid:10090)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 125/240 (52%), Positives = 170/240 (70%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDESLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAMV LE+P VNI++KMDL++ 
Sbjct:   122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMVSLEIPQVNIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             K  KEIE +L+P+   L+ +    +  Q F KL K++  LVD+YSMV F+P D   E  +
Sbjct:   182 KAKKEIEKFLDPDMYSLIDDSTGDLRSQKFKKLTKAVCGLVDDYSMVRFLPYDQSDEESM 241

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285197 gpn3 "GPN-loop GTPase 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 118/241 (48%), Positives = 179/241 (74%)

Query:     1 MG-YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISL 59
             MG + QLV+GPAGSGKSTYC ++ ++CE ++R++HIVNLDPAAE F+YPV++DI+ L+++
Sbjct:     1 MGKHVQLVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNLDPAAEVFEYPVSVDIKNLVTV 60

Query:    60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVL 119
             ++VM+EL  GPNGGL+Y ME+L +N+D W              + DCPGQIEL++H+PV+
Sbjct:    61 DEVMDELHYGPNGGLVYAMEYLIENMD-WLTDELGDYEDDYL-IIDCPGQIELYSHIPVM 118

Query:   120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179
             R  VDHL+   ++VC+V+L+DSQFI D  KFISG +  LSAMV+LE+PH+N+L+K+D++ 
Sbjct:   119 RILVDHLQQIGYSVCSVFLVDSQFILDNCKFISGALMCLSAMVRLEVPHINVLTKIDVLK 178

Query:   180 NK---KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR 236
                  KEIE +L+ E Q L+ ELN     ++ ++NK++  L++++S+V F+PLD+  +  
Sbjct:   179 TSDQYKEIEKFLDLEVQNLVEELNLETHDRYHRMNKAIGSLLEDFSLVGFVPLDITDQES 238

Query:   237 L 237
             L
Sbjct:   239 L 239

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

RGD|1303034 Gpn3 "GPN-loop GTPase 3" [Rattus norvegicus (taxid:10116)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 125/240 (52%), Positives = 169/240 (70%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P VNI++KMDL++ 
Sbjct:   122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             K  KEIE +L+P+   LL +    +  Q F KL K +  LVD+YSMV F+P D   E  +
Sbjct:   182 KAKKEIEKFLDPDMYSLLEDSTGDLRSQKFKKLTKPVCGLVDDYSMVRFLPYDQSDEESM 241

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

CGD|CAL0002280 orf19.3130 [Candida albicans (taxid:5476)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 123/241 (51%), Positives = 174/241 (72%)

Query:     6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
             LV+GPAG GKST+C+S+  + +++ R  HIVNLDPAA   +Y   +D+++LISL+DVMEE
Sbjct:     7 LVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVMEE 66

Query:    66 LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
             + LGPNGGL+YC E L +NLD W              +FDCPGQIEL+TH+PVL   V H
Sbjct:    67 MELGPNGGLVYCFEFLLNNLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPTIVRH 124

Query:   126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
             L+ S NFN+CA YLL++ FI D +KF SG ++++SAM+ LELPH+NILSK+DLV +   K
Sbjct:   125 LQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEYSK 184

Query:   182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQI 241
             K+++ +LNP+   LL++   ++ P+FAKL +S+  LVD++ MV F+PLD  K+SR +  I
Sbjct:   185 KQLKKFLNPDP-LLLAKQEDYINPKFAKLTQSIANLVDDFGMVQFLPLDCSKDSRSVETI 243

Query:   242 M 242
             +
Sbjct:   244 L 244

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A0W6 CaO19.10642 "GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642" [Candida albicans SC5314 (taxid:237561)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 123/241 (51%), Positives = 174/241 (72%)

Query:     6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
             LV+GPAG GKST+C+S+  + +++ R  HIVNLDPAA   +Y   +D+++LISL+DVMEE
Sbjct:     7 LVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVMEE 66

Query:    66 LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
             + LGPNGGL+YC E L +NLD W              +FDCPGQIEL+TH+PVL   V H
Sbjct:    67 MELGPNGGLVYCFEFLLNNLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPTIVRH 124

Query:   126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
             L+ S NFN+CA YLL++ FI D +KF SG ++++SAM+ LELPH+NILSK+DLV +   K
Sbjct:   125 LQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEYSK 184

Query:   182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRLLSQI 241
             K+++ +LNP+   LL++   ++ P+FAKL +S+  LVD++ MV F+PLD  K+SR +  I
Sbjct:   185 KQLKKFLNPDP-LLLAKQEDYINPKFAKLTQSIANLVDDFGMVQFLPLDCSKDSRSVETI 243

Query:   242 M 242
             +
Sbjct:   244 L 244

GO:0008150 "biological_process" evidence=ND

SGD|S000004233 GPN3 "Putative GTPase with a role in biogenesis of RNA pol II and polIII" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 120/231 (51%), Positives = 166/231 (71%)

Query:     6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
             +V+GPAG+GKST+C+S+  H +TV R  HIVNLDPAAE   Y   +DIR+LISL+DVMEE
Sbjct:     7 MVLGPAGAGKSTFCNSIISHMQTVGRRAHIVNLDPAAEATKYEFTIDIRDLISLDDVMEE 66

Query:    66 LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
             + LGPNG LIYC E+L  NLD W              +FDCPGQIEL+TH+PVL N V H
Sbjct:    67 MDLGPNGALIYCFEYLLKNLD-WLDEEIGDFNDEYL-IFDCPGQIELYTHIPVLPNIVRH 124

Query:   126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NK 181
             L  + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+DL+    NK
Sbjct:   125 LTQQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDLIKGDINK 184

Query:   182 KEIEDYLNPESQFLLSE--LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLD 230
             K+++ +LNP++  L+    +NQ   P+F +LN+ +  LVD++ MV F+PL+
Sbjct:   185 KKLKRFLNPDAMLLMETEGMNQASNPKFLRLNQCIANLVDDFGMVQFLPLE 235

GO:0005525 "GTP binding" evidence=IEA;ISA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044376 "RNA polymerase II complex localization to nucleus" evidence=IMP

GO:1990022 "RNA polymerase III complex localization to nucleus" evidence=IMP

GO:0005048 "signal sequence binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9UHW5 GPN3 "GPN-loop GTPase 3" [Homo sapiens (taxid:9606)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 121/240 (50%), Positives = 170/240 (70%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYC+++ +HCE + R++ +VNLDPAAE+F+Y V  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P VNI++KMDL++ 
Sbjct:   122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             K  KEIE +L+P+   LL +    + + +F KL K++  L+D+YSMV F+P D   E  +
Sbjct:   182 KAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEESM 241

GO:0005525 "GTP binding" evidence=IEA

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|E1C8Z1 GPN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 121/240 (50%), Positives = 167/240 (69%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYCS++ +HCE + R + +VNLDPAAE F YPV  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCSTMLQHCEALGRAVQVVNLDPAAEFFSYPVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N + W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLVFCMEYFANNFN-WLEESLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V+ L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P +NI++KMDL++ 
Sbjct:   122 QLVEQLQQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQINIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSE-LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRL 237
             K  KEIE YL+P+   ++ +  N   +  F KL KS+  L+D+Y MV F+P D   E  +
Sbjct:   182 KAKKEIEKYLDPDMYSMIEDSTNILKSKMFKKLTKSICGLIDDYGMVRFLPFDRSDEESI 241

GO:0000166 "nucleotide binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NK8	GPN3_DICDI	No assigned EC number	0.5210	0.9433	0.8175	yes	no
Q0P5E2	GPN3_BOVIN	No assigned EC number	0.5166	0.9433	0.8204	yes	no
Q5A0W6	GPN3_CANAL	No assigned EC number	0.5394	0.9473	0.8571	N/A	no
Q6FSS0	GPN3_CANGA	No assigned EC number	0.5502	0.9028	0.8228	yes	no
Q28I42	GPN3_XENTR	No assigned EC number	0.5358	0.9311	0.8070	yes	no
Q6CQA6	GPN3_KLULA	No assigned EC number	0.5432	0.9473	0.8634	yes	no
O14443	GPN3_SCHPO	No assigned EC number	0.5182	0.9554	0.8550	yes	no
Q06543	GPN3_YEAST	No assigned EC number	0.5454	0.9028	0.8198	yes	no
Q9UHW5	GPN3_HUMAN	No assigned EC number	0.525	0.9433	0.8204	yes	no
Q750Q9	GPN3_ASHGO	No assigned EC number	0.5185	0.9473	0.8634	yes	no
Q6BI59	GPN3_DEBHA	No assigned EC number	0.5435	0.9514	0.8576	yes	no
Q9D3W4	GPN3_MOUSE	No assigned EC number	0.5416	0.9433	0.8204	yes	no
Q6ZM63	GPN3_DANRE	No assigned EC number	0.5375	0.9433	0.8175	yes	no
Q4V7Z0	GPN3_XENLA	No assigned EC number	0.5443	0.9311	0.8070	N/A	no
Q6CBB5	GPN3_YARLI	No assigned EC number	0.5108	0.9109	0.8302	yes	no
Q4PF70	GPN3_USTMA	No assigned EC number	0.5245	0.9311	0.8185	N/A	no
P0CN94	GPN3_CRYNJ	No assigned EC number	0.5098	0.9797	0.8432	yes	no
P0CN95	GPN3_CRYNB	No assigned EC number	0.5098	0.9797	0.8432	N/A	no
Q6R518	GPN3_RAT	No assigned EC number	0.5416	0.9433	0.8204	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV1116	hypothetical protein (269 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0004003701	hypothetical protein (230 aa)			•	•					0.534
	estExt_fgenesh4_pm.C_LG_VI0124	hypothetical protein (284 aa)			•	•					0.511
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.444
	grail3.3692000102	hypothetical protein (121 aa)			•						0.439
	estExt_fgenesh4_pm.C_LG_VIII0372	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.425
	estExt_Genewise1_v1.C_LG_X0940	SubName- Full=Putative uncharacterized protein; (159 aa)			•						0.413
	estExt_fgenesh4_pm.C_LG_XVIII0351	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.402
	estExt_Genewise1_v1.C_LG_VI0968	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.402
	gw1.III.419.1	hypothetical protein (133 aa)			•						0.401
	gw1.13170.2.1	hypothetical protein (131 aa)			•						0.401

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	4e-91
PRK13768	253	PRK13768, PRK13768, GTPase; Provisional	4e-48
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	9e-25
pfam13207	114	pfam13207, AAA_17, AAA domain	0.002

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score =  268 bits (686), Expect = 4e-91
 Identities = 101/239 (42%), Positives = 150/239 (62%), Gaps = 14/239 (5%)

Query: 7   VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEEL 66
           V+GPAGSGK+T+  +L      + R++++VNLDPAAEN  Y   +DIRELI++ DVME+ 
Sbjct: 1   VVGPAGSGKTTFVGALSEILPLLGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDD 60

Query: 67  GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126
           GLGPNG L   M+ L   L DWL EEL+   +DDY +FD PGQIELFTH   L   V+ L
Sbjct: 61  GLGPNGALTVAMDFLRITL-DWLLEELEY--EDDYYLFDTPGQIELFTHWESLARGVEAL 117

Query: 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIED 186
           ++ +  + AVYL+D++ +TD + F SG + +LS M++L LP V  L+K DL++ +  ++ 
Sbjct: 118 EA-SLRLGAVYLVDTRRLTDPSDFFSGLLYALSIMLRLGLPFVVALNKFDLLSLEFALKW 176

Query: 187 YLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKES---RLLSQI 241
           + +P+   LL EL        +KLN+++ E +D + +V  F+P           LL+ I
Sbjct: 177 FTDPDDLQLLLEL------DPSKLNEAIREALDLFYLVPRFLPDARETGESMEDLLTLI 229

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional

 Score =  158 bits (403), Expect = 4e-48
 Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 9/218 (4%)

Query: 7   VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEEL 66
            +G AGSGK+T   +L    E     + IVNLDPA E   Y    D+R+ ++  ++M++ 
Sbjct: 7   FLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKY 66

Query: 67  GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126
           GLGPNG LI  ++ L    D+ + EE++  LD DY++ D PGQ+ELF      R  V+ L
Sbjct: 67  GLGPNGALIASVDLLLTKADE-IKEEIE-SLDADYVLVDTPGQMELFAFRESGRKLVERL 124

Query: 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK--KEI 184
            S +     V+L+D+      + F+S  + +LS  ++L LP + +L+K DL++ +  + I
Sbjct: 125 -SGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERI 183

Query: 185 EDYL-NPESQFLLSELNQHMAPQFAKLNKSLIELVDEY 221
             +L +PE   LL EL          L+  L+  ++E 
Sbjct: 184 LKWLEDPEY--LLEELKLE-KGLQGLLSLELLRALEET 218

Length = 253

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 97.3 bits (242), Expect = 9e-25
 Identities = 53/219 (24%), Positives = 74/219 (33%), Gaps = 18/219 (8%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-----VAMDIRELI 57
           +  +V+G  G GK+T  + L            I NLDPA     Y         D     
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 58  SLEDVMEELGLGPNGGLIYC----MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELF 113
               +  E   G NG LI       E  ++  ++WL EEL     DD  +     +I+LF
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWL-EELRELAPDDVPILLVGNKIDLF 124

Query: 114 THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173
                    ++ L         V L+ +             +   SA   L  P+VN L 
Sbjct: 125 DEQSSSEEILNQLNR-----EVVLLVLAPKAVLPEVANPALLE-TSAK-SLTGPNVNELF 177

Query: 174 KMDLVTNKKEIEDY-LNPESQFLLSELNQHMAPQFAKLN 211
           K  L    +EIE   L  E + L    N       A  N
Sbjct: 178 KELLRKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFN 216

Length = 219

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 32/120 (26%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           L+ GP GSGKST    L                   AE    PV       ISL+D++ E
Sbjct: 3   LITGPPGSGKSTLAKKL-------------------AEKLGIPV-------ISLDDLLRE 36

Query: 66  LGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124
            GL     G +  ++   + L++ L E     L     V D   +  L   +      V 
Sbjct: 37  EGLAELDDGELDDIDIDLELLEEILDE-----LAKQEWVIDGVRESTLELRLEEADLVVF 91

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG1533	290	consensus Predicted GTPase [General function predi	100.0
KOG1534	273	consensus Putative transcription factor FET5 [Tran	100.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	100.0
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.97
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.96
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.96
PRK13768	253	GTPase; Provisional	99.96
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.95
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.95
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.95
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.95
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.94
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.94
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.94
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.94
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.94
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.94
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.94
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.93
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.93
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.93
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.93
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.93
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.93
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.93
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.93
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.92
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.92
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.92
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.92
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.92
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.92
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.92
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.92
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.92
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.92
COG4559	259	ABC-type hemin transport system, ATPase component	99.92
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.92
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.92
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.92
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.92
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.92
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.92
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.92
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.92
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.92
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.92
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.92
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.92
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.92
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.92
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.92
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.92
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.92
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.92
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.92
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.91
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.91
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.91
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.91
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.91
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.91
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.91
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.91
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.91
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.91
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.91
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.91
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.91
PRK10908	222	cell division protein FtsE; Provisional	99.91
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.91
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.91
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.91
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.91
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.91
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.91
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.91
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.91
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.91
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.91
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.91
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.91
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.91
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.91
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.91
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.91
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.91
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.91
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.91
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.91
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.91
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.9
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.9
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.9
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.9
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.9
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.9
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.9
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.9
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.9
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.9
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.9
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.9
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.9
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.9
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.9
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.9
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.9
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.9
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.9
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.9
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.9
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.9
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.9
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.9
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.9
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.9
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.9
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.9
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.9
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.9
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.89
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.89
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.89
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.89
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.89
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.89
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.89
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.89
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.89
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.89
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.89
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.89
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.89
PRK10938	490	putative molybdenum transport ATP-binding protein	99.89
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.89
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.89
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.89
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.89
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.89
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.89
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.89
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.89
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.89
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.89
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.89
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.89
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.89
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.88
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.88
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.88
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.88
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.88
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.88
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.88
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.88
COG1123	539	ATPase components of various ABC-type transport sy	99.88
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.88
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.88
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.88
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.88
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.88
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.88
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.88
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.88
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03246	173	ABCC_Protease_Secretion This family represents the	99.88
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.88
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.88
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.88
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.88
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.88
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.88
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.88
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.88
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.88
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.88
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.88
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.87
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.87
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.87
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.87
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.87
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.87
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.87
COG4181	228	Predicted ABC-type transport system involved in ly	99.87
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.87
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.87
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.87
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.87
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.87
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.87
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.87
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.87
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.87
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.87
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.87
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.87
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.87
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.87
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.87
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.86
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.86
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.86
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.86
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.86
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.86
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.86
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK13409	590	putative ATPase RIL; Provisional	99.86
PRK13409	590	putative ATPase RIL; Provisional	99.86
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.86
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.86
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.86
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.86
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.86
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.86
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.86
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.86
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.85
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.85
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.85
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.85
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.85
PLN03211	659	ABC transporter G-25; Provisional	99.85
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.85
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.85
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.85
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.84
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.84
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.84
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.84
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.84
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.84
COG0488	530	Uup ATPase components of ABC transporters with dup	99.84
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.83
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.83
COG1123	539	ATPase components of various ABC-type transport sy	99.83
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.83
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.83
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.83
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.83
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.83
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.83
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.83
PRK10938	490	putative molybdenum transport ATP-binding protein	99.83
COG4172	534	ABC-type uncharacterized transport system, duplica	99.83
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.83
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.83
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.83
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.83
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.83
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.82
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.82
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.82
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.82
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.82
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.82
COG4988	559	CydD ABC-type transport system involved in cytochr	99.82
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.82
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.82
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.82
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.82
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.81
PRK11147	635	ABC transporter ATPase component; Reviewed	99.81
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.81
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.81
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.81
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.81
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.81
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.81
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.81
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.81
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.8
PRK11147	635	ABC transporter ATPase component; Reviewed	99.8
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.8
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.8
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.8
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.8
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.79
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.79
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.79
PLN03140	1470	ABC transporter G family member; Provisional	99.79
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.79
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.78
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.78
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.78
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.78
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.78
PLN03232	1495	ABC transporter C family member; Provisional	99.77
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.77
PLN03073	718	ABC transporter F family; Provisional	99.77
COG4987	573	CydC ABC-type transport system involved in cytochr	99.77
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.76
PLN03130	1622	ABC transporter C family member; Provisional	99.76
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.76
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.75
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.75
PTZ00243	1560	ABC transporter; Provisional	99.75
COG0488	530	Uup ATPase components of ABC transporters with dup	99.75
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.75
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.74
PLN03140	1470	ABC transporter G family member; Provisional	99.74
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.74
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.73
PLN03073	718	ABC transporter F family; Provisional	99.72
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.71
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.7
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.7
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.7
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.7
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.67
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.67
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.66
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.66
PLN03130	1622	ABC transporter C family member; Provisional	99.66
PLN03232	1495	ABC transporter C family member; Provisional	99.66
KOG0062	582	consensus ATPase component of ABC transporters wit	99.66
PTZ00243	1560	ABC transporter; Provisional	99.65
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.64
COG4172	534	ABC-type uncharacterized transport system, duplica	99.64
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.64
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.63
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.63
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.62
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.61
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.61
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.6
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.59
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.59
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.56
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.55
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.55
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.52
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.5
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.5
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.49
COG4178	604	ABC-type uncharacterized transport system, permeas	99.48
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.46
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.46
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.44
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.41
KOG0062	582	consensus ATPase component of ABC transporters wit	99.4
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.4
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.37
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.36
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.34
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.32
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.32
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.31
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.29
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.29
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.27
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.26
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.25
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.21
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.2
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.2
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.19
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.18
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.18
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.14
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.13
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.04
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.01
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.0
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.96
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.96
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.95
COG3910	233	Predicted ATPase [General function prediction only	98.91
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.89
PRK13695	174	putative NTPase; Provisional	98.82
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.81
PRK10416	318	signal recognition particle-docking protein FtsY;	98.78
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.78
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.77
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.74
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.74
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.74
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.72
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.69
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.68
smart00382	148	AAA ATPases associated with a variety of cellular	98.66
COG1100	219	GTPase SAR1 and related small G proteins [General	98.65
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.62
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.61
PRK14974	336	cell division protein FtsY; Provisional	98.58
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.58
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.58
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.56
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.53
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.53
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.53
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.52
PRK00089	292	era GTPase Era; Reviewed	98.52
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.52
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.51
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.51
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.49
PRK06067	234	flagellar accessory protein FlaH; Validated	98.49
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.48
cd01128	249	rho_factor Transcription termination factor rho is	98.48
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.48
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.45
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.45
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.45
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.44
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.41
PRK09866	741	hypothetical protein; Provisional	98.39
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.38
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.38
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.37
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.37
cd03112	158	CobW_like The function of this protein family is u	98.36
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.36
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.35
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.34
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.33
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.31
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.3
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.3
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.3
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.29
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.29
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.28
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.27
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.27
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.27
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.26
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.25
cd00881	189	GTP_translation_factor GTP translation factor fami	98.25
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.22
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.21
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.21
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.21
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.19
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.19
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.19
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.18
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.17
PRK05480	209	uridine/cytidine kinase; Provisional	98.17
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.16
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.15
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.15
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.15
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.14

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-56  Score=374.04  Aligned_cols=243  Identities=46%  Similarity=0.826  Sum_probs=224.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      |+|+++||||+||||||+|..++.++...++.+.++|+||+++..+|++..+|++.++++++|+++++||||++++|+++
T Consensus         1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~   80 (290)
T KOG1533|consen    1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY   80 (290)
T ss_pred             CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (247)
                      +..+. .|+...+-.. ...|+|+|+|||++.++++...+++++.+.+.+.++++|+++|+|++++|++|+|.+++++.+
T Consensus        81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t  158 (290)
T KOG1533|consen   81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT  158 (290)
T ss_pred             HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence            99999 9998888763 668999999999999999999989999999999999999999999999999999999999999


Q ss_pred             HhhccCCeeeeecccccccchhhh----hhhcc-cCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCCeeeEEeeccCh
Q 025844          161 MVQLELPHVNILSKMDLVTNKKEI----EDYLN-PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE  234 (247)
Q Consensus       161 ~~~~~~p~i~vlsk~dll~~~~~~----~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  234 (247)
                      |+.++.|||||+||+|++++++.+    +-+.+ .|..+|...++. +..++|++||++||++|+||++|+|.||+++|+
T Consensus       159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk  238 (290)
T KOG1533|consen  159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK  238 (290)
T ss_pred             HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence            999999999999999999987533    22222 256666655544 355799999999999999999999999999999


Q ss_pred             H---HHHHHhhhcc
Q 025844          235 S---RLLSQIMKMS  245 (247)
Q Consensus       235 ~---~l~~~id~~~  245 (247)
                      |   |+++.|||||
T Consensus       239 eSml~l~~~IDkAn  252 (290)
T KOG1533|consen  239 ESMLRLQQTIDKAN  252 (290)
T ss_pred             HHHHHHHHHHHhcc
Confidence            9   9999999997

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=100.00  E-value=1.1e-53  Score=351.99  Aligned_cols=241  Identities=65%  Similarity=1.166  Sum_probs=225.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      |+|.+.++||+||||||+|+.+..+.+..++++.++|+||+++.+.|+..+++||.|+++++|+.+.+||||++++|+++
T Consensus         2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy   81 (273)
T KOG1534|consen    2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY   81 (273)
T ss_pred             CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (247)
                      +.+++ .|+...+..+ +.+|+|+|+|||++++++..+++++++.+++...++++|+++|+.++.|..+|+|.++.++++
T Consensus        82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA  159 (273)
T KOG1534|consen   82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA  159 (273)
T ss_pred             HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence            99999 9999887765 889999999999999999999999999998889999999999999999999999999999999


Q ss_pred             HhhccCCeeeeecccccccc--hhhhhhhcccCHHHHHH--HhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChH-
Q 025844          161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-  235 (247)
Q Consensus       161 ~~~~~~p~i~vlsk~dll~~--~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-  235 (247)
                      |+++++|||||+||.||++.  +..+++|+++|...+.+  +.+. ..+||.+|++.++.+++||++|+|+|++..++| 
T Consensus       160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS  238 (273)
T KOG1534|consen  160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES  238 (273)
T ss_pred             HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence            99999999999999999985  24789999998776654  3333 337999999999999999999999999999999 


Q ss_pred             --HHHHHhhhc
Q 025844          236 --RLLSQIMKM  244 (247)
Q Consensus       236 --~l~~~id~~  244 (247)
                        .++++||.|
T Consensus       239 i~~iL~~ID~a  249 (273)
T KOG1534|consen  239 INIILSYIDDA  249 (273)
T ss_pred             HHHHHHHHHHH
Confidence              999999976

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=100.00  E-value=2.1e-47  Score=328.97  Aligned_cols=230  Identities=51%  Similarity=0.877  Sum_probs=179.9

Q ss_pred             EEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhhhHH
Q 025844            7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD   86 (247)
Q Consensus         7 iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~   86 (247)
                      |+||+||||||||+.+..+++..+.++.+.|+||+++.++|.+++++||.++++++|++++|||||+..+|++++..++ 
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~-   79 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI-   79 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccC
Q 025844           87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL  166 (247)
Q Consensus        87 ~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~  166 (247)
                      .|+...+... +++|+|+|+|||++.++++..++.+++.|++ +.++++||++|++.+.+|.+|++.++++++.|+++++
T Consensus        80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l  157 (238)
T PF03029_consen   80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL  157 (238)
T ss_dssp             HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence            8988887655 6799999999999999999999889999976 7788899999999999999999999999999999999


Q ss_pred             Ceeeeecccccccch--hhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCe-eeEEeeccChH---HHHHH
Q 025844          167 PHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKES---RLLSQ  240 (247)
Q Consensus       167 p~i~vlsk~dll~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~---~l~~~  240 (247)
                      ||++|+||+|++++.  ..++++.  +++.+...+...    ++++++++++++++|+++ +|+|+|+++++   +|+++
T Consensus       158 P~vnvlsK~Dl~~~~~~~~l~~~~--d~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~  231 (238)
T PF03029_consen  158 PHVNVLSKIDLLSKYLEFILEWFE--DPDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAA  231 (238)
T ss_dssp             EEEEEE--GGGS-HHHHHHHHHHH--SHHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHH
T ss_pred             CEEEeeeccCcccchhHHHHHHhc--ChHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHH
Confidence            999999999999843  2333333  445554444432    899999999999999998 99999999999   99999


Q ss_pred             hhhcc
Q 025844          241 IMKMS  245 (247)
Q Consensus       241 id~~~  245 (247)
                      ||+|.
T Consensus       232 id~a~  236 (238)
T PF03029_consen  232 IDKAN  236 (238)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99974

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=100.00  E-value=6.7e-34  Score=243.11  Aligned_cols=238  Identities=27%  Similarity=0.454  Sum_probs=206.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +.++.++|.+|||||||++-|.+++....-..++.|+||+..++||+.+++|||.+...++|++++|||||+...|++.+
T Consensus        19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF   98 (366)
T KOG1532|consen   19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF   98 (366)
T ss_pred             CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence            46889999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             hhhHH--HHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhH
Q 025844           82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS  159 (247)
Q Consensus        82 ~~~~~--~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (247)
                      ..++.  ..+.+....  +-+++|+|.|||++.+++.....-+.+.|+.. ..++++|.+|+.....|..|+|+++.+++
T Consensus        99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence            88874  234444444  56799999999999999999884455667654 46678999999999999999999999999


Q ss_pred             HHhhccCCeeeeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccChH---
Q 025844          160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES---  235 (247)
Q Consensus       160 ~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~---  235 (247)
                      .+++..+|.+.||||+|+...++.++++-  |.+.+.+++++........|.++|.-.+++|.- +.+.-++..+++   
T Consensus       176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~--DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  176 ILYKTKLPFIVVFNKTDVSDSEFALEWMT--DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHHhccCCeEEEEecccccccHHHHHHHH--HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence            99999999999999999999886555432  577888888765556888999999999999876 888888888777   


Q ss_pred             HHHHHhhhc
Q 025844          236 RLLSQIMKM  244 (247)
Q Consensus       236 ~l~~~id~~  244 (247)
                      .++..+|.+
T Consensus       254 df~~av~~~  262 (366)
T KOG1532|consen  254 DFFTAVDES  262 (366)
T ss_pred             HHHHHHHHH
Confidence            888888754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=2.3e-30  Score=215.56  Aligned_cols=141  Identities=20%  Similarity=0.256  Sum_probs=117.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---------------CCCCCCCcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDYPVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---------------~~~~~y~~~~~v~e~i~---------   58 (247)
                      -+++|+||+|||||||+|+|.++.+|++|+|+++|.++.               .|++..+|.+|+.+|+.         
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~  108 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL  108 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence            478999999999999999999999999999999996553               15566688999999986         


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              +.++++++||.......+.  .+++|+  |++|||||+.  +|++++|||||+ |||+...++. +.++.|+
T Consensus       109 ~k~eA~~~A~~lL~~VGL~~ka~~yP~--qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm~~LA  183 (240)
T COG1126         109 SKAEAREKALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVMKDLA  183 (240)
T ss_pred             CHHHHHHHHHHHHHHcCchhhhhhCcc--ccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHHHHHH
Confidence                    6788999999887544433  466654  5999999999  999999999999 9999999999 9999999


Q ss_pred             hCCCeEEEEEecccccccchhHHhh
Q 025844          128 SRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++|.|.++|.    |.+.-.....+
T Consensus       184 ~eGmTMivVT----HEM~FAr~Vad  204 (240)
T COG1126         184 EEGMTMIIVT----HEMGFAREVAD  204 (240)
T ss_pred             HcCCeEEEEe----chhHHHHHhhh
Confidence            9999998774    55544444444

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.3e-30  Score=220.26  Aligned_cols=154  Identities=16%  Similarity=0.288  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-Cc--------ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-~~--------~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+|++.|+++|.+|+|.+.|.+...    ..++| ||        .+||+|.+.           
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~  110 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR  110 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence            3689999999999999999999999999999999875422    23555 22        457888775           


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++++|+....++.  +..+|+|+  |+.|||||+.  +|++++||||++ +|+.++..++ ++++++
T Consensus       111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~lL~~l  185 (254)
T COG1121         111 RLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DLLKEL  185 (254)
T ss_pred             cccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HHHHHH
Confidence                     78899999999877666  44677765  4999999999  999999999999 9999999999 999999


Q ss_pred             HhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhcc
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE  165 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~  165 (247)
                      +++|++|++|+    |.+.....+++.+++.....+..+
T Consensus       186 ~~eg~tIl~vt----HDL~~v~~~~D~vi~Ln~~~~~~G  220 (254)
T COG1121         186 RQEGKTVLMVT----HDLGLVMAYFDRVICLNRHLIASG  220 (254)
T ss_pred             HHCCCEEEEEe----CCcHHhHhhCCEEEEEcCeeEecc
Confidence            88899998885    666666677765444443333333

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.96  E-value=4.5e-30  Score=221.61  Aligned_cols=161  Identities=21%  Similarity=0.351  Sum_probs=124.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+|+|+|+++|.+|+|.++|.++..       +.++|       +..++|+|.+.          
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~  108 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF  108 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence            4789999999999999999999999999999999987632       22222       22455555553          


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++++|+.+|+.....+.  .+.+++|.+  +|||+|+++  +|++++|||||+ ||+.++.+++ +++++
T Consensus       109 ~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ll~~  183 (258)
T COG1120         109 GRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-ELLRD  183 (258)
T ss_pred             cCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-HHHHH
Confidence                      77789999999887666  456777654  999999999  999999999999 9999999999 99999


Q ss_pred             HHh-CCCeEEEEEecccccccchhHHhhhhHHHh-HHHhhccCCeeeeec
Q 025844          126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILS  173 (247)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~-~~~~~~~~p~i~vls  173 (247)
                      +++ +|.++++|.    |.+.-...|++.+++.. +.++..+.|. .|++
T Consensus       184 l~~~~~~tvv~vl----HDlN~A~ryad~~i~lk~G~i~a~G~p~-evlT  228 (258)
T COG1120         184 LNREKGLTVVMVL----HDLNLAARYADHLILLKDGKIVAQGTPE-EVLT  228 (258)
T ss_pred             HHHhcCCEEEEEe----cCHHHHHHhCCEEEEEECCeEEeecCcc-hhcC
Confidence            985 588887773    55555677777665544 3444555554 3443

>PRK13768 GTPase; Provisional

Probab=99.96  E-value=3.8e-27  Score=204.96  Aligned_cols=238  Identities=32%  Similarity=0.577  Sum_probs=200.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      |++++++.||.||||||++..++..+...+.++.+.+.||+....+|.++.++++.++.++++...+++|++...++++.
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~   80 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL   80 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence            78999999999999999999999998877778999999999988899889999999999999999999999999988876


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (247)
                      ...+. .++...+... +++++++|.|++.+++.++...+.+.+.+.+.. +-++++++|+....++.++.....+....
T Consensus        81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~  157 (253)
T PRK13768         81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV  157 (253)
T ss_pred             HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence            76666 6666666554 679999999999999988888877888886544 56678899998888899998888888888


Q ss_pred             HhhccCCeeeeecccccccchhhh---hhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccChH-
Q 025844          161 MVQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES-  235 (247)
Q Consensus       161 ~~~~~~p~i~vlsk~dll~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-  235 (247)
                      +.+.+.|++.|+||+|++++. +.   .++++ +++.+.++++...+.. ++|++++++.+++++. .++.|+|+.+++ 
T Consensus       158 ~~~~~~~~i~v~nK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~g  234 (253)
T PRK13768        158 QLRLGLPQIPVLNKADLLSEE-ELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEG  234 (253)
T ss_pred             HHHcCCCEEEEEEhHhhcCch-hHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcC
Confidence            889999999999999999865 33   33344 6667766666544445 8999999999999987 599999998877 


Q ss_pred             --HHHHHhhhc
Q 025844          236 --RLLSQIMKM  244 (247)
Q Consensus       236 --~l~~~id~~  244 (247)
                        .|...|.+.
T Consensus       235 l~~L~~~I~~~  245 (253)
T PRK13768        235 FDELYAAIQEV  245 (253)
T ss_pred             HHHHHHHHHHH
Confidence              787777664

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=1.7e-27  Score=211.23  Aligned_cols=144  Identities=16%  Similarity=0.290  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCCCcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y~~~~~v~e~i~-----------   58 (247)
                      -+++++||||||||||+|+|+|+++|++|+|.+.|.++..             +...+++.+|++|++.           
T Consensus        32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~  111 (293)
T COG1131          32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE  111 (293)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence            3789999999999999999999999999999999987643             2233456789998875           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.++|.+.....  ...++.|++  +.||.+|+.  +|+++||||||+ ||+.++..+. ++++.++++|
T Consensus       112 ~~~~~~~~~l~~~~L~~~~~~~--~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g  186 (293)
T COG1131         112 EAEERIEELLELFGLEDKANKK--VRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEG  186 (293)
T ss_pred             HHHHHHHHHHHHcCCchhhCcc--hhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 56799999999843222  355777654  899999999  999999999999 9999999998 9999998876


Q ss_pred             -CeEEEEEecccccccchhHHhhhhH
Q 025844          131 -FNVCAVYLLDSQFITDVTKFISGCM  155 (247)
Q Consensus       131 -~~ii~v~l~d~~~~~d~~~~~s~~l  155 (247)
                       .+|+    +.+|.+.+...+|+.++
T Consensus       187 ~~tvl----issH~l~e~~~~~d~v~  208 (293)
T COG1131         187 GVTIL----LSTHILEEAEELCDRVI  208 (293)
T ss_pred             CcEEE----EeCCcHHHHHHhCCEEE
Confidence             6774    45799988888877443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.95  E-value=9.9e-28  Score=197.80  Aligned_cols=154  Identities=19%  Similarity=0.232  Sum_probs=127.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCCCcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y~~~~~v~e~i~-----------   58 (247)
                      -+++|+|||||||||++|+|++++.|++|.|+++|.|...             ...+++..+|++|++.           
T Consensus        29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~  108 (245)
T COG4555          29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK  108 (245)
T ss_pred             eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence            4789999999999999999999999999999999987643             2233455789999885           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           +++++++++|....++.+.  .++.|++  +.||||+++  +|++++||||++ ||..+++.+. +++.+++++|
T Consensus       109 ~~kari~~l~k~l~l~~~~~rRv~--~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~eg  183 (245)
T COG4555         109 EIKARIAELSKRLQLLEYLDRRVG--EFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEG  183 (245)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHh--hhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCC
Confidence                 6788999999887655533  4666654  999999999  999999999999 9999999888 9999998888


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccc
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  180 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~  180 (247)
                      ..++    +++|.+.+.+.+|+               ++-++-|...+-.
T Consensus       184 r~vi----FSSH~m~EvealCD---------------rvivlh~Gevv~~  214 (245)
T COG4555         184 RAVI----FSSHIMQEVEALCD---------------RVIVLHKGEVVLE  214 (245)
T ss_pred             cEEE----EecccHHHHHHhhh---------------eEEEEecCcEEEc
Confidence            8874    56899999999998               5556666666543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.95  E-value=2.4e-27  Score=201.71  Aligned_cols=142  Identities=21%  Similarity=0.266  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~----------   58 (247)
                      -+++++||+||||||++|+|.++++|++|+|+++|.+...              |.++.+|.+||.+|+.          
T Consensus        28 ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k  107 (309)
T COG1125          28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK  107 (309)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH
Confidence            3578999999999999999999999999999999988754              4455578999999986          


Q ss_pred             ------HHHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 ------LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 ------~~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                            ++|.|+.+||.|. -..+|+ +.+++|+  |+.+||||+.  +|+++++|||++ |||.++.++. +.+.++++
T Consensus       108 ~~i~~r~~ELl~lvgL~p~~~~~RyP-~eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~  183 (309)
T COG1125         108 ERIKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQK  183 (309)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHhhcCc-hhcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHH
Confidence                  7899999999984 334444 4566654  4899999999  999999999998 9999999987 77777765


Q ss_pred             -CCCeEEEEEecccccccchhHHhh
Q 025844          129 -RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 -~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       .++|+++|    +|.+.+..++.+
T Consensus       184 ~l~kTivfV----THDidEA~kLad  204 (309)
T COG1125         184 ELGKTIVFV----THDIDEALKLAD  204 (309)
T ss_pred             HhCCEEEEE----ecCHHHHHhhhc
Confidence             58999888    477777777665

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=8.7e-28  Score=204.56  Aligned_cols=142  Identities=13%  Similarity=0.159  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCCCcccChhhhHh---------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS---------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y~~~~~v~e~i~---------------   58 (247)
                      -+++|+||+|||||||+|+++|+.+|++|+|.+.|..+..         |+....|..|+.+|+.               
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~  109 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE  109 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence            3689999999999999999999999999999999976521         3444467788999885               


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                       ++++++.+||....+...  ..+++|++  ++||||++.  +|++|++|||++ ||..++..+...+++-+++.+.|++
T Consensus       110 ~a~~~L~~VgL~~~~~~~P--~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl  185 (248)
T COG1116         110 RAKELLELVGLAGFEDKYP--HQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL  185 (248)
T ss_pred             HHHHHHHHcCCcchhhcCc--cccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence             788999999998876654  35777765  999999999  999999999998 9999999998566666667788998


Q ss_pred             EEEecccccccchhHHhh
Q 025844          135 AVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       135 ~v~l~d~~~~~d~~~~~s  152 (247)
                      +|    +|.+.+.....+
T Consensus       186 lV----THdi~EAv~Lsd  199 (248)
T COG1116         186 LV----THDVDEAVYLAD  199 (248)
T ss_pred             EE----eCCHHHHHhhhC
Confidence            77    366655544434

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=1.7e-26  Score=195.05  Aligned_cols=142  Identities=17%  Similarity=0.192  Sum_probs=114.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------------CCCCCCcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------------~~~~y~~~~~v~e~i~-------   58 (247)
                      -+.+|+||+|||||||+|.|.|+++|++|+|++.|.+...                 |.-+.+.++||+||+.       
T Consensus        35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~  114 (263)
T COG1127          35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT  114 (263)
T ss_pred             cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence            4789999999999999999999999999999999988632                 2222345789999986       


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +..-++.+||.+.....++ ..+++|++  ++||||++.  +|+++++||||+ |||.+...+- +++++
T Consensus       115 ~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-sELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~LI~~  190 (263)
T COG1127         115 KLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-ELIRE  190 (263)
T ss_pred             cCCHHHHHHHHHHHHHhcCCChhhhhhCc-hhhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-HHHHH
Confidence                      4566778999988555555 36788875  999999999  999999999999 9999998887 99999


Q ss_pred             HHh-CCCeEEEEEecccccccchhHHhh
Q 025844          126 LKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      |++ .|.|+++|.    |.+......++
T Consensus       191 L~~~lg~T~i~VT----HDl~s~~~i~D  214 (263)
T COG1127         191 LNDALGLTVIMVT----HDLDSLLTIAD  214 (263)
T ss_pred             HHHhhCCEEEEEE----CChHHHHhhhc
Confidence            976 488887773    55444444444

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.94  E-value=2.3e-26  Score=205.27  Aligned_cols=146  Identities=17%  Similarity=0.217  Sum_probs=115.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCC-------CCcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~-------y~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..      +.++       +++.+|++|++.           
T Consensus        34 ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  113 (306)
T PRK13537         34 ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA  113 (306)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999987632      2233       344678888764           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.+++.+.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.+++.+. +++++++++|
T Consensus       114 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g  188 (306)
T PRK13537        114 AARALVPPLLEFAKLENKADAK--VGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARG  188 (306)
T ss_pred             HHHHHHHHHHHHcCCchHhcCc--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 34677888887644333  345776654  899999999  999999999999 9999999998 8999997778


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHH
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMAS  157 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (247)
                      .+|+++    +|.+.+...+|+.++..
T Consensus       189 ~till~----sH~l~e~~~~~d~i~il  211 (306)
T PRK13537        189 KTILLT----THFMEEAERLCDRLCVI  211 (306)
T ss_pred             CEEEEE----CCCHHHHHHhCCEEEEE
Confidence            888554    68888888888755443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=6.5e-27  Score=203.92  Aligned_cols=161  Identities=14%  Similarity=0.166  Sum_probs=126.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCC-------CCcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~-------y~~~~~v~e~i~-------   58 (247)
                      -+.||+|++|||||||+|++.++.+|++|+|.++|.|...          +.++       .....||.+++.       
T Consensus        33 eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag  112 (339)
T COG1135          33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG  112 (339)
T ss_pred             cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence            3689999999999999999999999999999999977632          2333       333568888875       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+||....+..++  .+++|+  +++|||||+.  +|++|+.||||+ |||.+.+.++ ++++.+
T Consensus       113 ~~k~ei~~RV~elLelVgL~dk~~~yP~--qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~LL~~I  187 (339)
T COG1135         113 VPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-ELLKDI  187 (339)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhccCch--hcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHHH
Confidence                     7899999999976554433  466654  5999999999  999999999999 9999999999 999999


Q ss_pred             Hh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeee
Q 025844          127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  172 (247)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl  172 (247)
                      ++ .|.||++|    +|.|.-...+|+.+.....+.+.-..+..+||
T Consensus       188 n~~lglTIvlI----THEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF  230 (339)
T COG1135         188 NRELGLTIVLI----THEMEVVKRICDRVAVLDQGRLVEEGTVSEVF  230 (339)
T ss_pred             HHHcCCEEEEE----echHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence            86 59999877    47777777888855555444444444444444

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=2.3e-26  Score=194.99  Aligned_cols=131  Identities=23%  Similarity=0.231  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------CCCCCCcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------~~~~y~~~~~v~e~i~------   58 (247)
                      -+++|+||+|||||||++++.|+.+|++|.|++.|.|...                  |.+..-+++|+.||+.      
T Consensus        32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~  111 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA  111 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence            3689999999999999999999999999999999976532                  3333356789999986      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++++++.+|+++.....++ ..+++|+  |++||||++.  +|++++.||||. ||..+...++ +++++
T Consensus       112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~  187 (226)
T COG1136         112 GKSAGRRKRAAEELLEVLGLEDRLLKKKP-SELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLRE  187 (226)
T ss_pred             CCChhHHHHHHHHHHHhcCChhhhccCCc-hhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHH
Confidence                      4567778899866543333 3566654  5999999999  999999999998 9999999999 99999


Q ss_pred             HHhC-CCeEEEEE
Q 025844          126 LKSR-NFNVCAVY  137 (247)
Q Consensus       126 l~~~-~~~ii~v~  137 (247)
                      ++++ |.++++|.
T Consensus       188 ~~~~~g~tii~VT  200 (226)
T COG1136         188 LNKERGKTIIMVT  200 (226)
T ss_pred             HHHhcCCEEEEEc
Confidence            9764 88888773

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.94  E-value=7.1e-26  Score=201.66  Aligned_cols=145  Identities=17%  Similarity=0.252  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      ..++|       ++.+++++++.           
T Consensus        20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~   99 (302)
T TIGR01188        20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD   99 (302)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999976521      12333       34567777764           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.+++.+.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.+++.+. +++++++++|
T Consensus       100 ~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g  174 (302)
T TIGR01188       100 EAEERAEELLELFELGEAADRP--VGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEG  174 (302)
T ss_pred             HHHHHHHHHHHHcCChhHhCCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 45678889987643333  345776654  899999999  999999999999 9999999998 8899987678


Q ss_pred             CeEEEEEecccccccchhHHhhhhHH
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMA  156 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (247)
                      .+++++    +|.+.+...+|+.++.
T Consensus       175 ~tvi~~----sH~~~~~~~~~d~v~~  196 (302)
T TIGR01188       175 VTILLT----THYMEEADKLCDRIAI  196 (302)
T ss_pred             CEEEEE----CCCHHHHHHhCCEEEE
Confidence            888655    5777777777764433

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.94  E-value=9.2e-26  Score=203.94  Aligned_cols=146  Identities=16%  Similarity=0.252  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      ..++|       ++.+++.+++.           
T Consensus        68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  147 (340)
T PRK13536         68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR  147 (340)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999987532      22333       34567777764           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.+++.+.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.+++.+. ++++++++.|
T Consensus       148 ~~~~~~~~ll~~~~L~~~~~~~--~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g  222 (340)
T PRK13536        148 EIEAVIPSLLEFARLESKADAR--VSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG  222 (340)
T ss_pred             HHHHHHHHHHHHcCCchhhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence                 34677888887644333  345776654  899999999  999999999999 9999999998 9999987778


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHH
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMAS  157 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (247)
                      .+|+++    +|.+.+...+|+.+++.
T Consensus       223 ~tilis----SH~l~e~~~~~d~i~il  245 (340)
T PRK13536        223 KTILLT----THFMEEAERLCDRLCVL  245 (340)
T ss_pred             CEEEEE----CCCHHHHHHhCCEEEEE
Confidence            888544    68888888888755443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=5.3e-26  Score=204.22  Aligned_cols=153  Identities=14%  Similarity=0.166  Sum_probs=120.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh-------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS-------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~-------------   58 (247)
                      +++++|||||||||++|+|+|+.+|++|+|.++|.+...            |+.+.+|.+||.+||.             
T Consensus        33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~  112 (352)
T COG3842          33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAE  112 (352)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHH
Confidence            578999999999999999999999999999999987532            4445588999999975             


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~  130 (247)
                          +.++++.++|.+.+.+...  .+++|+  +++|||||+.  +|++|+||||.+ ||...+.++. .-++++. +.|
T Consensus       113 i~~rv~e~L~lV~L~~~~~R~p~--qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~g  187 (352)
T COG3842         113 IKARVEEALELVGLEGFADRKPH--QLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKELQRELG  187 (352)
T ss_pred             HHHHHHHHHHHcCchhhhhhChh--hhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHHHHhcC
Confidence                7889999999998777644  566654  5999999999  999999999999 9999998887 5555554 568


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccc
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  180 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~  180 (247)
                      .|.++|.    |.-.+.....+               .|.|+++.-+...
T Consensus       188 iT~i~VT----HDqeEAl~msD---------------rI~Vm~~G~I~Q~  218 (352)
T COG3842         188 ITFVYVT----HDQEEALAMSD---------------RIAVMNDGRIEQV  218 (352)
T ss_pred             CeEEEEE----CCHHHHhhhcc---------------ceEEccCCceeec
Confidence            8888773    55444444333               4556666655443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.7e-26  Score=193.49  Aligned_cols=148  Identities=18%  Similarity=0.198  Sum_probs=117.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC--------C------CCC---CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------N------FDY---PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~--------~------~~y---~~~~~v~e~i~-------   58 (247)
                      -+++|+|++|||||||+++++|+.+|+.|+|.++|......        .      -+|   .|..+|++.+.       
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~  113 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG  113 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence            47899999999999999999999999999999999643221        0      112   45567777664       


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             +.++++.+||.+.-..+++. .+++|+  |++|||||..  +|++||+||||+ ||...+.+++ +++.++++
T Consensus       114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~-eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~  189 (252)
T COG1124         114 LSKSQQRIAELLDQVGLPPSFLDRRPH-ELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKK  189 (252)
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHhcCch-hcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHH
Confidence                   68899999999877666664 577775  4999999999  999999999999 9999999999 99999976


Q ss_pred             -CCCeEEEEEecccccccchhHHhhhhHHHh
Q 025844          129 -RNFNVCAVYLLDSQFITDVTKFISGCMASL  158 (247)
Q Consensus       129 -~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~  158 (247)
                       .+.+.++|    +|.+.-...+|+++.+..
T Consensus       190 ~~~lt~l~I----sHdl~~v~~~cdRi~Vm~  216 (252)
T COG1124         190 ERGLTYLFI----SHDLALVEHMCDRIAVMD  216 (252)
T ss_pred             hcCceEEEE----eCcHHHHHHHhhheeeee
Confidence             47787766    466666666766544433

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.93  E-value=4.9e-26  Score=203.43  Aligned_cols=129  Identities=21%  Similarity=0.190  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh-------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS-------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~-------------   58 (247)
                      +++++||||||||||+|+|+|+.+|++|+|.++|.+...            |+.+.+|.+||++|+.             
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei  110 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI  110 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH
Confidence            578999999999999999999999999999999976532            5555688999999986             


Q ss_pred             ---HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 025844           59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF  131 (247)
Q Consensus        59 ---~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~  131 (247)
                         ++++.+.+++.+...+...  .+++|+  ++++|||+..  +|++++||||.+ ||...+..+. .-++++++ .+.
T Consensus       111 ~~rV~eva~~L~l~~lL~r~P~--~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh~~l~~  185 (338)
T COG3839         111 DKRVKEVAKLLGLEHLLNRKPL--QLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLHERLGT  185 (338)
T ss_pred             HHHHHHHHHHcCChhHHhcCcc--cCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHHHhcCC
Confidence               7789999999987766643  466665  4999999999  999999999999 9999988877 77777765 477


Q ss_pred             eEEEEE
Q 025844          132 NVCAVY  137 (247)
Q Consensus       132 ~ii~v~  137 (247)
                      |+|.|.
T Consensus       186 T~IYVT  191 (338)
T COG3839         186 TTIYVT  191 (338)
T ss_pred             cEEEEc
Confidence            887773

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.93  E-value=1.3e-25  Score=190.34  Aligned_cols=141  Identities=14%  Similarity=0.213  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +.++|       .+..++.+++.       
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  109 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG  109 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999876421          22333       23457777653       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       110 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~  184 (216)
T TIGR00960       110 VPPRDANERVSAALEKVGLEGKAHAL--PMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RLFEEF  184 (216)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence                     45678888887644333  245666643  899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++.+.+++++    +|.......+++
T Consensus       185 ~~~~~tii~v----sH~~~~~~~~~d  206 (216)
T TIGR00960       185 NRRGTTVLVA----THDINLVETYRH  206 (216)
T ss_pred             HHCCCEEEEE----eCCHHHHHHhCC
Confidence            7667787666    355444444444

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.93  E-value=1.9e-25  Score=182.71  Aligned_cols=131  Identities=15%  Similarity=0.212  Sum_probs=108.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---CCCCC--------------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---~~~~y--------------~~~~~v~e~i~-------   58 (247)
                      -++.++||+|||||||+|.|++..+|+.|+|+++|.|...   .++||              -++.|+.||+.       
T Consensus        29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G  108 (223)
T COG2884          29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG  108 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence            3578999999999999999999999999999999988743   23332              23568999986       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                               +.++++.+||..........-+..++++++||||+..  +|++||.||||. |||.....++ ++++++++
T Consensus       109 ~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~lfeeinr  185 (223)
T COG2884         109 KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RLFEEINR  185 (223)
T ss_pred             CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HHHHHHhh
Confidence                     7889999999876544433222223466999999999  999999999997 9999999999 99999998


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .|.||++.
T Consensus       186 ~GtTVl~A  193 (223)
T COG2884         186 LGTTVLMA  193 (223)
T ss_pred             cCcEEEEE
Confidence            99998766

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.93  E-value=9.3e-26  Score=203.97  Aligned_cols=149  Identities=14%  Similarity=0.192  Sum_probs=116.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..          ..++|       .+..|+++++.       
T Consensus        32 ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~  111 (343)
T TIGR02314        32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  111 (343)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999976531          23333       33467877764       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+|+.+.....  ...+++|+  +++||||++.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       112 ~~~~~~~~~v~e~l~~vgL~~~~~~~--~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~lL~~l  186 (343)
T TIGR02314       112 TPKDEIKRKVTELLALVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-ELLKEI  186 (343)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     45788889997654433  24566665  4999999999  999999999999 9999999999 999998


Q ss_pred             HhC-CCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844          127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (247)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (247)
                      +++ |.+++++    +|.+.....+|+.+++...+
T Consensus       187 ~~~~g~tiili----TH~~~~v~~~~d~v~vl~~G  217 (343)
T TIGR02314       187 NRRLGLTILLI----THEMDVVKRICDCVAVISNG  217 (343)
T ss_pred             HHhcCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence            764 8888766    47777667777755444333

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=1.7e-25  Score=189.38  Aligned_cols=157  Identities=13%  Similarity=0.138  Sum_probs=127.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---CCCCC-------CcccChhhhHh--------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS--------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~--------------   58 (247)
                      -+.+++|||||||||.+|+|.|+++|++|+|.|+|.+...   ..++|       ++.+++.|.+.              
T Consensus        29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~  108 (300)
T COG4152          29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ  108 (300)
T ss_pred             eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH
Confidence            4689999999999999999999999999999999977643   34555       46789988774              


Q ss_pred             --HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844           59 --LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (247)
Q Consensus        59 --~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (247)
                        +..||+++++..+....  .+.+++|.  .+.+..++++  +|+++|||||++ |||.+.+.+- +.+.+++.+|.+|
T Consensus       109 ~~~~~wLer~~i~~~~~~k--Ik~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk-~~I~~lk~~GatI  183 (300)
T COG4152         109 KKLQAWLERLEIVGKKTKK--IKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLK-DAIFELKEEGATI  183 (300)
T ss_pred             HHHHHHHHhccccccccch--HHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHH-HHHHHHHhcCCEE
Confidence              68899999998776555  45677653  3566668888  999999999999 9999987765 8999998899999


Q ss_pred             EEEEecccccccchhHHhhhhHHHhHHHhhccCCe
Q 025844          134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH  168 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~  168 (247)
                      +    +++|.|.+.+.+|+.+++...+...+..+.
T Consensus       184 i----fSsH~Me~vEeLCD~llmL~kG~~V~~G~v  214 (300)
T COG4152         184 I----FSSHRMEHVEELCDRLLMLKKGQTVLYGTV  214 (300)
T ss_pred             E----EecchHHHHHHHhhhhheecCCceEEeccH
Confidence            4    568999999999998877665554444443

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.9e-25  Score=199.39  Aligned_cols=141  Identities=16%  Similarity=0.164  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            ++..+++.+|+++++.            
T Consensus        31 e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~  110 (356)
T PRK11650         31 EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE  110 (356)
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHH
Confidence            3689999999999999999999999999999999976531            2222345678888874            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          ++++++.+++.+......  ..+++|+  +++|||+++.  +|+++|||||++ ||+.++..+. +.++++.++ |
T Consensus       111 ~~~~~~~~l~~~gL~~~~~~~~--~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  185 (356)
T PRK11650        111 IEERVAEAARILELEPLLDRKP--RELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLK  185 (356)
T ss_pred             HHHHHHHHHHHcCChhHhhCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                457888899987654442  4566665  4999999999  999999999999 9999999988 888888664 8


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++++|    +|...+...+++
T Consensus       186 ~tii~v----THd~~ea~~l~D  203 (356)
T PRK11650        186 TTSLYV----THDQVEAMTLAD  203 (356)
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            888766    466665556555

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.8e-25  Score=188.41  Aligned_cols=157  Identities=15%  Similarity=0.206  Sum_probs=124.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------------CCCCCCcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------------~~~~y~~~~~v~e~i~-------   58 (247)
                      -.++|+||+|||||||+|+|.|+..|++|+|.++|.++..                 +.+...+.+++.+++.       
T Consensus        31 E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~  110 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT  110 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence            3689999999999999999999999999999999977632                 3333345667777763       


Q ss_pred             -----------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                       +-+.++++|+.+....+  .+.+++|+  |++|||+|++  +|++++.|||++ |||.+.+.+
T Consensus       111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~V  186 (258)
T COG3638         111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKV  186 (258)
T ss_pred             hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHH
Confidence                             56788899998776555  35677764  5999999999  999999999999 999999999


Q ss_pred             HHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCe
Q 025844          119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH  168 (247)
Q Consensus       119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~  168 (247)
                      | ++++++++ .|.|+++.    .|.+.-...||++++-...+.+.++.|.
T Consensus       187 m-~~l~~in~~~g~Tvi~n----LH~vdlA~~Y~~Riigl~~G~ivfDg~~  232 (258)
T COG3638         187 M-DILKDINQEDGITVIVN----LHQVDLAKKYADRIIGLKAGRIVFDGPA  232 (258)
T ss_pred             H-HHHHHHHHHcCCEEEEE----echHHHHHHHHhhheEecCCcEEEeCCh
Confidence            9 99999875 57887544    3666666788887777666666665555

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.93  E-value=8.3e-25  Score=194.87  Aligned_cols=145  Identities=17%  Similarity=0.246  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      ..++|       .+..++++++.           
T Consensus        31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  110 (303)
T TIGR01288        31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR  110 (303)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999876521      22333       33567777763           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.+++.+.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.++..+. +++++++++|
T Consensus       111 ~~~~~~~~ll~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g  185 (303)
T TIGR01288       111 EIEAVIPSLLEFARLESKADVR--VALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG  185 (303)
T ss_pred             HHHHHHHHHHHHCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 23567778886543333  345776654  899999999  999999999999 9999999998 8899987778


Q ss_pred             CeEEEEEecccccccchhHHhhhhHH
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMA  156 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (247)
                      .+++++    +|...+...+++.++.
T Consensus       186 ~til~~----sH~~~~~~~~~d~i~~  207 (303)
T TIGR01288       186 KTILLT----THFMEEAERLCDRLCV  207 (303)
T ss_pred             CEEEEE----CCCHHHHHHhCCEEEE
Confidence            888655    5776666666664433

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.92  E-value=4.4e-25  Score=186.72  Aligned_cols=141  Identities=16%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAE  106 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHH
Confidence            4689999999999999999999999999999999876521     22333       22456766653            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++++ .|
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~  181 (213)
T cd03259         107 IRARVRELLELVGLEGLLNRY--PHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQRELG  181 (213)
T ss_pred             HHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence                34677888886543332  245666654  899999999  999999999999 9999999998 88888865 47


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       182 ~tii~~----sH~~~~~~~~~d  199 (213)
T cd03259         182 ITTIYV----THDQEEALALAD  199 (213)
T ss_pred             CEEEEE----ecCHHHHHHhcC
Confidence            777665    355444444444

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.92  E-value=2.4e-25  Score=191.07  Aligned_cols=141  Identities=19%  Similarity=0.237  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..++|       .+..++.+++.       
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  106 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT  106 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence            3689999999999999999999999999999999865421          12333       23457776653       


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..++ +++++
T Consensus       107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  181 (235)
T cd03261         107 RLSEEEIREIVLEKLEAVGLRGAEDLY--PAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-DLIRS  181 (235)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHH
Confidence                      34567888886643333  345676654  899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEEEecccccccchhHHhh
Q 025844          126 LKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++ .|.+++++    +|...+...+++
T Consensus       182 ~~~~~~~tvi~v----sH~~~~~~~~~d  205 (235)
T cd03261         182 LKKELGLTSIMV----THDLDTAFAIAD  205 (235)
T ss_pred             HHHhcCcEEEEE----ecCHHHHHHhcC
Confidence            876 47787666    355554455554

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.92  E-value=1.6e-25  Score=182.11  Aligned_cols=143  Identities=19%  Similarity=0.234  Sum_probs=115.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCC-------CCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~-------~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||+|||||||++.++|+..|.+|.|+++|.|...     ..+       ..+..+||.+|+.            
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~  105 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE  105 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence            4789999999999999999999999999999999987532     111       1233567777764            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          ++.++.++|+....++...  .+++|+  ++++||++..  +.++++||||++ |||..+.++. .++.+++. ++
T Consensus       106 ~r~~v~~aa~~vGl~~~~~RLP~--~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~  180 (231)
T COG3840         106 QREKVEAAAAQVGLAGFLKRLPG--ELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLCDERK  180 (231)
T ss_pred             HHHHHHHHHHHhChhhHhhhCcc--ccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhC
Confidence                7889999999988766643  466654  4999999999  999999999999 9999999998 99999975 58


Q ss_pred             CeEEEEEecccccccchhHHhhhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      .|+++|    +|...|.....+++
T Consensus       181 ~TllmV----TH~~~Da~~ia~~~  200 (231)
T COG3840         181 MTLLMV----THHPEDAARIADRV  200 (231)
T ss_pred             CEEEEE----eCCHHHHHHhhhce
Confidence            899877    47777776665533

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.92  E-value=6.4e-25  Score=186.21  Aligned_cols=141  Identities=17%  Similarity=0.265  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      +.++|       .+..++++++.           
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  111 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD  111 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHH
Confidence            3689999999999999999999999999999999876431      12222       33457777663           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++++++
T Consensus       112 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~  186 (218)
T cd03266         112 ELTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQLRALG  186 (218)
T ss_pred             HHHHHHHHHHHHcCCHHHHhhh--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence                 45678888886543333  345666654  899999999  999999999999 9999999988 8888887667


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       187 ~tii~~----tH~~~~~~~~~d  204 (218)
T cd03266         187 KCILFS----THIMQEVERLCD  204 (218)
T ss_pred             CEEEEE----eCCHHHHHHhcC
Confidence            888666    355554445544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.92  E-value=2.9e-25  Score=188.34  Aligned_cols=129  Identities=21%  Similarity=0.275  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+..++++++.      
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  110 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA  110 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence            4789999999999999999999999999999999875421           22333       23457766653      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+|+.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~  185 (218)
T cd03255         111 GVPKKERRERAEELLERVGLGDRLNHY--PSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-ELLRE  185 (218)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhcC--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                      45677888887643332  245666654  899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEE
Q 025844          126 LKS-RNFNVCAV  136 (247)
Q Consensus       126 l~~-~~~~ii~v  136 (247)
                      +++ .+.+++++
T Consensus       186 ~~~~~~~tii~~  197 (218)
T cd03255         186 LNKEAGTTIVVV  197 (218)
T ss_pred             HHHhcCCeEEEE
Confidence            876 57787666

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.92  E-value=1.2e-24  Score=183.03  Aligned_cols=141  Identities=18%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-C-------cccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-P-------VAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-~-------~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..    +.++| +       ...+++|++.            
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~  106 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQ  106 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHH
Confidence            4689999999999999999999999999999999976421    22333 1       1346777663            


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      +.++++.+++.+.....  ...++.|++  ++||++++.  +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus       107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~  181 (205)
T cd03226         107 AETVLKDLDLYALKERH--PLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIV  181 (205)
T ss_pred             HHHHHHHcCCchhcCCC--chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence            46778889997654333  245666654  899999999  999999999999 9999999988 888888766778766


Q ss_pred             EEecccccccchhHHhh
Q 025844          136 VYLLDSQFITDVTKFIS  152 (247)
Q Consensus       136 v~l~d~~~~~d~~~~~s  152 (247)
                      +    +|...+...+++
T Consensus       182 ~----sH~~~~~~~~~d  194 (205)
T cd03226         182 I----THDYEFLAKVCD  194 (205)
T ss_pred             E----eCCHHHHHHhCC
Confidence            6    355554444444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.92  E-value=7.5e-25  Score=186.27  Aligned_cols=141  Identities=14%  Similarity=0.250  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      +.++|       .+..++++++.           
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  106 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA  106 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence            4689999999999999999999999999999999865421      12222       33456666652           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-  129 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-  129 (247)
                           ++++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ 
T Consensus       107 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~  181 (220)
T cd03265         107 ERRERIDELLDFVGLLEAADRL--VKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEF  181 (220)
T ss_pred             HHHHHHHHHHHHcCCHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhc
Confidence                 45678888887543322  345676654  899999999  999999999999 9999999988 888888765 


Q ss_pred             CCeEEEEEecccccccchhHHhh
Q 025844          130 NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      |.+++++    +|...+...+++
T Consensus       182 ~~tvi~~----tH~~~~~~~~~d  200 (220)
T cd03265         182 GMTILLT----THYMEEAEQLCD  200 (220)
T ss_pred             CCEEEEE----eCCHHHHHHhCC
Confidence            7787666    465555555554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.92  E-value=7.1e-25  Score=185.43  Aligned_cols=141  Identities=18%  Similarity=0.252  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +.++|       .+..++.+++.       
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  108 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG  108 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999876531          22333       22356666653       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++++++
T Consensus       109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~  183 (214)
T TIGR02673       109 KKEREIQRRVGAALRQVGLEHKADAF--PEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DLLKRL  183 (214)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     34677788886543222  245666653  899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++.+++++    +|...+...+++
T Consensus       184 ~~~~~tii~~----tH~~~~~~~~~d  205 (214)
T TIGR02673       184 NKRGTTVIVA----THDLSLVDRVAH  205 (214)
T ss_pred             HHcCCEEEEE----eCCHHHHHHhcC
Confidence            7667787666    355555545444

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.3e-24  Score=197.35  Aligned_cols=141  Identities=14%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            ++...+|.+|+++++.            
T Consensus        31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~  110 (353)
T TIGR03265        31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE  110 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence            3689999999999999999999999999999999976531            2223355678888875            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          ++++++.++|.+.....  ...+++|+  +++|||+|+.  +|+++|||||++ ||...+..+. +.++++.+ .+
T Consensus       111 ~~~~~~~~l~~l~L~~~~~~~--~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~  185 (353)
T TIGR03265       111 VAERVAELLDLVGLPGSERKY--PGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLG  185 (353)
T ss_pred             HHHHHHHHHHHcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                56788899998765444  24566665  4999999999  999999999999 9999999988 88888765 48


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++++|    +|...+...+++
T Consensus       186 ~tvi~v----THd~~ea~~l~d  203 (353)
T TIGR03265       186 VTTIMV----THDQEEALSMAD  203 (353)
T ss_pred             CEEEEE----cCCHHHHHHhCC
Confidence            888766    466665555555

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.92  E-value=9.2e-25  Score=184.34  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---CCCCC-------CCcccChhhhHh--------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AENFD-------YPVAMDIRELIS--------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---~~~~~-------y~~~~~v~e~i~--------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.   ...+.       +.+..++++++.              
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  106 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR  106 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH
Confidence            468999999999999999999999999999999997642   11222       233457777653              


Q ss_pred             --HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844           59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (247)
Q Consensus        59 --~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (247)
                        +.++++.+++.+.....  ...++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++++++.++
T Consensus       107 ~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ti  181 (210)
T cd03269         107 RRIDEWLERLELSEYANKR--VEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTV  181 (210)
T ss_pred             HHHHHHHHHcCChHHHhCc--HhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence              35677788886533222  345666654  889999999  999999999999 9999999998 8888887667777


Q ss_pred             EEEEecccccccchhHHhh
Q 025844          134 CAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (247)
                      +++    +|...+...+++
T Consensus       182 i~~----sH~~~~~~~~~d  196 (210)
T cd03269         182 ILS----THQMELVEELCD  196 (210)
T ss_pred             EEE----CCCHHHHHHhhh
Confidence            655    455544444444

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.92  E-value=2e-24  Score=185.33  Aligned_cols=141  Identities=18%  Similarity=0.214  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..++|       .+..++++++.         
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~  106 (236)
T cd03219          27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS  106 (236)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence            3689999999999999999999999999999999876421        12333       23356666542         


Q ss_pred             -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                       +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  182 (236)
T cd03219         107 GLLLARARREEREARERAEELLERVGLADLADRP--AGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL  182 (236)
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCccchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence                             34567778886543332  345666654  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . ++++++++.|.+++++    +|...+...+++
T Consensus       183 ~-~~l~~~~~~~~tii~v----sH~~~~~~~~~d  211 (236)
T cd03219         183 A-ELIRELRERGITVLLV----EHDMDVVMSLAD  211 (236)
T ss_pred             H-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            8 8888887667787666    465555555555

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.1e-25  Score=193.34  Aligned_cols=140  Identities=19%  Similarity=0.229  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------CCCCCC-Cc-------ccChhhhHh---------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV-------AMDIRELIS---------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------~~~~~y-~~-------~~~v~e~i~---------   58 (247)
                      +++|+||||||||||+++++|+++|++|.|.++|.+..        .+.++| +|       .-+|.+-+.         
T Consensus        32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~  111 (235)
T COG1122          32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP  111 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCC
Confidence            68999999999999999999999999999999997743        133333 11       225555443         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             ++++++.+|+.......  ...+++|+  +++||.+++.  +|+++||||||+ ||+.+++.++ +++++|++
T Consensus       112 ~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~~L~~  186 (235)
T COG1122         112 REEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLKKLKE  186 (235)
T ss_pred             HHHHHHHHHHHHHHcCchhhccCC--ccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHh
Confidence                   77899999998774333  34567664  4999999999  999999999999 9999999999 99999987


Q ss_pred             C-CCeEEEEEecccccccchhHHhh
Q 025844          129 R-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      + |.+++++    +|.+.....+++
T Consensus       187 ~~~~tii~~----tHd~~~~~~~ad  207 (235)
T COG1122         187 EGGKTIIIV----THDLELVLEYAD  207 (235)
T ss_pred             cCCCeEEEE----eCcHHHHHhhCC
Confidence            6 6788665    466666666666

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.92  E-value=1.5e-24  Score=193.04  Aligned_cols=144  Identities=20%  Similarity=0.310  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      +.++|       ++.+++.|++.           
T Consensus        29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~  108 (301)
T TIGR03522        29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ  108 (301)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999976532      12333       34567777763           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.+|+.+.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.++..+. ++++++++ +
T Consensus       109 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~-~  182 (301)
T TIGR03522       109 LLKQRVEEMIELVGLRPEQHKK--IGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNIGK-D  182 (301)
T ss_pred             HHHHHHHHHHHHCCCchHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHhcC-C
Confidence                 45677788988754444  345666654  899999999  999999999999 9999999988 88888854 6


Q ss_pred             CeEEEEEecccccccchhHHhhhhHH
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMA  156 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (247)
                      .+++++    +|.+.+...+|+.++.
T Consensus       183 ~tiii~----sH~l~~~~~~~d~i~~  204 (301)
T TIGR03522       183 KTIILS----THIMQEVEAICDRVII  204 (301)
T ss_pred             CEEEEE----cCCHHHHHHhCCEEEE
Confidence            777544    6878777777775443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=5.8e-25  Score=182.74  Aligned_cols=174  Identities=18%  Similarity=0.237  Sum_probs=126.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~----------   58 (247)
                      -+.+|+||||||||||+|.++|.+.|++|++.++|.++..              ++......++++|.+.          
T Consensus        28 ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~  107 (259)
T COG4559          28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR  107 (259)
T ss_pred             cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC
Confidence            4689999999999999999999999999999999987532              2222222346666664          


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCC----CCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLD----DDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~----p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                              ++++|...++....++-|..-+..+.+++.+||.|++...    +++|+|||||+ ||+..+...+ ++.++
T Consensus       108 ~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~laR~  186 (259)
T COG4559         108 EPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RLARQ  186 (259)
T ss_pred             CchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HHHHH
Confidence                    6778999999888777765433333466999999997643    35999999999 9999999999 99999


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHh-hccCCeeeeecccccccchhhhhhhcc
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLVTNKKEIEDYLN  189 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~-~~~~p~i~vlsk~dll~~~~~~~~~~~  189 (247)
                      +.++|..|++| ++|   +.-.+.|++++++...+.+ ..+.|       .|.+..+ .++..+.
T Consensus       187 la~~g~~V~~V-LHD---LNLAA~YaDrivll~~Grv~a~g~p-------~~vlt~E-tl~~vyg  239 (259)
T COG4559         187 LAREGGAVLAV-LHD---LNLAAQYADRIVLLHQGRVIASGSP-------QDVLTDE-TLERVYG  239 (259)
T ss_pred             HHhcCCcEEEE-Ecc---chHHHHhhheeeeeeCCeEeecCCH-------HHhcCHH-HHHHHhC
Confidence            99888888777 344   4445677777666544432 33333       3344444 5555554

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=1.2e-25  Score=190.41  Aligned_cols=141  Identities=16%  Similarity=0.176  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~---------   58 (247)
                      -++++||||||||||++++++|+++|++|+|.+.|.|+..               |....++++|+.||+.         
T Consensus        31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~  110 (250)
T COG0411          31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL  110 (250)
T ss_pred             eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence            4789999999999999999999999999999999987632               4444467888888874         


Q ss_pred             -------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844           59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (247)
Q Consensus        59 -------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~  116 (247)
                                         +.++++.+||.+.......  .++.+.+  +.||+||+.  +|++|+||||.+ +.+....
T Consensus       111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~--~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~  186 (250)
T COG0411         111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAG--NLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE  186 (250)
T ss_pred             hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh--cCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence                               4567888999887655532  3444332  899999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++. ++++++++ .|.++++|-    |.+.-.-.+|+
T Consensus       187 ~l~-~~i~~i~~~~g~tillIE----HdM~~Vm~l~d  218 (250)
T COG0411         187 ELA-ELIRELRDRGGVTILLIE----HDMKLVMGLAD  218 (250)
T ss_pred             HHH-HHHHHHHhcCCcEEEEEE----eccHHHhhhcc
Confidence            999 99999987 468887772    55554555555

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.92  E-value=2.1e-24  Score=184.76  Aligned_cols=141  Identities=17%  Similarity=0.221  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..++|       .+..++++++.         
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  106 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS  106 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC
Confidence            3689999999999999999999999999999999875421        12333       23456776653         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             ++++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus       107 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~  181 (232)
T cd03218         107 KKEREEKLEELLEEFHITHLRKSK--ASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKD  181 (232)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34677788886543322  245666543  899999999  999999999999 9999999998 88888876


Q ss_pred             CCCeEEEEEecccccccchhHHhh
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+.+++++    +|...+...+++
T Consensus       182 ~~~tii~~----sH~~~~~~~~~d  201 (232)
T cd03218         182 RGIGVLIT----DHNVRETLSITD  201 (232)
T ss_pred             CCCEEEEE----eCCHHHHHHhCC
Confidence            67787665    355555555544

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.92  E-value=1.4e-24  Score=182.97  Aligned_cols=141  Identities=15%  Similarity=0.209  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  106 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR  106 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHH
Confidence            4689999999999999999999999999999999976531     12222       33567777763            


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      ++++++.+++.......  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++++++.++++
T Consensus       107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~  181 (208)
T cd03268         107 IDEVLDVVGLKDSAKKK--VKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLI  181 (208)
T ss_pred             HHHHHHHcCCHHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence            45677888886543333  345666654  899999999  999999999999 9999999998 888888766777766


Q ss_pred             EEecccccccchhHHhh
Q 025844          136 VYLLDSQFITDVTKFIS  152 (247)
Q Consensus       136 v~l~d~~~~~d~~~~~s  152 (247)
                      +    +|...+...+++
T Consensus       182 ~----tH~~~~~~~~~d  194 (208)
T cd03268         182 S----SHLLSEIQKVAD  194 (208)
T ss_pred             E----cCCHHHHHHhcC
Confidence            5    455554445444

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.92  E-value=2.1e-24  Score=198.73  Aligned_cols=148  Identities=18%  Similarity=0.253  Sum_probs=114.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|+++|.++..       ..++|       ++.+++++++.          
T Consensus        30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~  109 (402)
T PRK09536         30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF  109 (402)
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence            3689999999999999999999999999999999976532       12222       23456665542          


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++++++.+++.+.....  ...++.|+  ++.||++|++  +|++|||||||+ ||+.++..++ +++++
T Consensus       110 ~~~~~~~~~~v~~~le~vgl~~~~~~~--~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~lL~~  184 (402)
T PRK09536        110 DTWTETDRAAVERAMERTGVAQFADRP--VTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-ELVRR  184 (402)
T ss_pred             cCCCHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence                      56788888987654443  34566664  4999999999  999999999999 9999999998 99999


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhhhhHHHhH
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS  159 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (247)
                      +++++.+++++    +|.+.+...+++.+++...
T Consensus       185 l~~~g~TIIiv----sHdl~~~~~~adrii~l~~  214 (402)
T PRK09536        185 LVDDGKTAVAA----IHDLDLAARYCDELVLLAD  214 (402)
T ss_pred             HHhcCCEEEEE----ECCHHHHHHhCCEEEEEEC
Confidence            97667787655    5777777777776554433

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.92  E-value=2e-24  Score=196.61  Aligned_cols=141  Identities=16%  Similarity=0.268  Sum_probs=111.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCC--ceEEEeccCCCC------------CCCCCCcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAA------------ENFDYPVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~--G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+.+|++  |+|.++|.+...            ++...++.+|+++++.          
T Consensus        32 e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~  111 (362)
T TIGR03258        32 ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK  111 (362)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCH
Confidence            3689999999999999999999999999  999999976521            2222345678888874          


Q ss_pred             ------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                            ++++++.++|.+.....  ...+++|+  +++|||+|+.  +|+++|||||++ ||+..+..+. +.++++.++
T Consensus       112 ~~~~~~v~~~l~~~gL~~~~~~~--~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~  186 (362)
T TIGR03258       112 ADIAERVADALKLVGLGDAAAHL--PAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAALHEE  186 (362)
T ss_pred             HHHHHHHHHHHHhcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHh
Confidence                  56788889998765444  34566665  4999999999  999999999999 9999999988 888888764


Q ss_pred             --CCeEEEEEecccccccchhHHhh
Q 025844          130 --NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       130 --~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                        |.++++|    +|...+...+++
T Consensus       187 ~~g~til~v----THd~~ea~~l~d  207 (362)
T TIGR03258       187 LPELTILCV----THDQDDALTLAD  207 (362)
T ss_pred             CCCCEEEEE----eCCHHHHHHhCC
Confidence              6788666    466665555555

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.92  E-value=9.9e-25  Score=185.53  Aligned_cols=141  Identities=18%  Similarity=0.185  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCC-------CcccChhhhHh---------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS---------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y-------~~~~~v~e~i~---------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...  +.++|       .+..++++++.               
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  110 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE  110 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            4789999999999999999999999999999999876521  22333       23456766653               


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (247)
                       +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .+.++
T Consensus       111 ~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~ti  185 (220)
T cd03293         111 RAEELLELVGLSGFENAY--PHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTV  185 (220)
T ss_pred             HHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence             35677888886543222  235666643  899999999  999999999999 9999999998 88888754 47777


Q ss_pred             EEEEecccccccchhHHhh
Q 025844          134 CAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (247)
                      +++    +|...+...+++
T Consensus       186 ii~----sH~~~~~~~~~d  200 (220)
T cd03293         186 LLV----THDIDEAVFLAD  200 (220)
T ss_pred             EEE----ecCHHHHHHhCC
Confidence            666    355554445544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.92  E-value=3.2e-24  Score=195.16  Aligned_cols=144  Identities=17%  Similarity=0.180  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+..           ...++|       ++.+|+++++.      
T Consensus        20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~   99 (363)
T TIGR01186        20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL   99 (363)
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999999999999999997653           123333       45678888874      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+||.......  ...+++|++  ++||++++.  +|+++|+|||++ ||+.++..+. +.+.+
T Consensus       100 ~~~~~~~~~~~~~~l~~vgL~~~~~~~--p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~~l~~  174 (363)
T TIGR01186       100 GWPEQERKEKALELLKLVGLEEYEHRY--PDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-DELKK  174 (363)
T ss_pred             CCCHHHHHHHHHHHHHhcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence                      45778889997654333  245777654  899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEEEecccccccchhHHhhhhH
Q 025844          126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCM  155 (247)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (247)
                      +.+ .+.+++++    +|.+.+...+++.++
T Consensus       175 l~~~~~~Tii~v----THd~~ea~~~~drI~  201 (363)
T TIGR01186       175 LQATLQKTIVFI----THDLDEAIRIGDRIV  201 (363)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHhCCEEE
Confidence            865 47888766    466665566655443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.92  E-value=1.2e-24  Score=183.87  Aligned_cols=141  Identities=17%  Similarity=0.227  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~  107 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG  107 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999876421          12333       23456776653       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~  182 (214)
T cd03292         108 VPPREIRKRVPAALELVGLSHKHRAL--PAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NLLKKI  182 (214)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence                     34677788886543222  245666543  899999999  999999999999 9999999988 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++.+++++    +|.......+++
T Consensus       183 ~~~~~tiiiv----tH~~~~~~~~~d  204 (214)
T cd03292         183 NKAGTTVVVA----THAKELVDTTRH  204 (214)
T ss_pred             HHcCCEEEEE----eCCHHHHHHhCC
Confidence            6667787666    354444444433

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.2e-24  Score=196.00  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..++|       ++.+|+++++.            
T Consensus        30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~  109 (369)
T PRK11000         30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE  109 (369)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH
Confidence            3689999999999999999999999999999999876421     22322       44568888764            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          ++++++.+++.......  ...+++|++  ++||++++.  +|++||||||++ ||+.++..+. ++++++.++ |
T Consensus       110 ~~~~~~~~l~~lgL~~~~~~~--~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g  184 (369)
T PRK11000        110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG  184 (369)
T ss_pred             HHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhC
Confidence                45678888987644333  245666654  999999999  999999999999 9999999988 888888654 7


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       185 ~tvI~v----THd~~~~~~~~d  202 (369)
T PRK11000        185 RTMIYV----THDQVEAMTLAD  202 (369)
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            888666    365555555555

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.92  E-value=3.7e-24  Score=184.24  Aligned_cols=141  Identities=15%  Similarity=0.163  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..++|       .+..++.+++.            
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  108 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP  108 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence            3689999999999999999999999999999999876421     22333       22346666543            


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              ++++++.+++.+.....  ...++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++++
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  183 (239)
T cd03296         109 PEAEIRAKVHELLKLVQLDWLADRY--PAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRRLH  183 (239)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                    24567778886543222  245666654  899999999  999999999999 9999999998 8888887


Q ss_pred             hC-CCeEEEEEecccccccchhHHhh
Q 025844          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++ |.+++++    +|...+...+++
T Consensus       184 ~~~~~tvii~----sH~~~~~~~~~d  205 (239)
T cd03296         184 DELHVTTVFV----THDQEEALEVAD  205 (239)
T ss_pred             HHcCCEEEEE----eCCHHHHHHhCC
Confidence            64 7787666    355444444444

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.8e-24  Score=195.02  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...            ++...++.+|+.+++.            
T Consensus        33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~  112 (351)
T PRK11432         33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE  112 (351)
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH
Confidence            4689999999999999999999999999999999976421            2223356778888875            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          ++++++.+++.+.....  ...+++|+  +++|||+|+.  +|+++|||||++ ||+..+..+. +.++++.++ |
T Consensus       113 ~~~~v~~~l~~~gl~~~~~r~--~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  187 (351)
T PRK11432        113 RKQRVKEALELVDLAGFEDRY--VDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFN  187 (351)
T ss_pred             HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45688888997765444  24566664  4999999999  999999999999 9999999988 888888654 7


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++++|    +|...+...+++
T Consensus       188 ~tii~v----THd~~e~~~laD  205 (351)
T PRK11432        188 ITSLYV----THDQSEAFAVSD  205 (351)
T ss_pred             CEEEEE----cCCHHHHHHhCC
Confidence            888666    466665555555

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.92  E-value=1.3e-24  Score=183.51  Aligned_cols=141  Identities=20%  Similarity=0.218  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       +.++|        .+..++++++.         
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~  107 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP  107 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999875421       22333        12346666553         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++++
T Consensus       108 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~  182 (211)
T cd03225         108 EEEIEERVEEALELVGLEGLRDRS--PFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLKKLKA  182 (211)
T ss_pred             HHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34577788886533322  234666643  899999999  999999999999 9999999998 88888876


Q ss_pred             CCCeEEEEEecccccccchhHHhh
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +|.+++++    +|...+...+++
T Consensus       183 ~~~tvi~~----sH~~~~~~~~~d  202 (211)
T cd03225         183 EGKTIIIV----THDLDLLLELAD  202 (211)
T ss_pred             cCCEEEEE----eCCHHHHHHhCC
Confidence            67777665    455554445444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.1e-24  Score=194.35  Aligned_cols=145  Identities=14%  Similarity=0.204  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +.++|       .+..++++++.       
T Consensus        32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~  111 (343)
T PRK11153         32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG  111 (343)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999976531          22333       23467777764       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+|+.+.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.++..+. ++++++
T Consensus       112 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~L~~l  186 (343)
T PRK11153        112 TPKAEIKARVTELLELVGLSDKADRY--PAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI  186 (343)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     35678888887643333  245666654  899999999  999999999999 9999999998 889888


Q ss_pred             HhC-CCeEEEEEecccccccchhHHhhhhHH
Q 025844          127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMA  156 (247)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (247)
                      +++ |.+++++    +|.+.+...+++.++.
T Consensus       187 ~~~~g~tiilv----tH~~~~i~~~~d~v~~  213 (343)
T PRK11153        187 NRELGLTIVLI----THEMDVVKRICDRVAV  213 (343)
T ss_pred             HHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence            654 7888666    4666655666664433

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.92  E-value=1.3e-24  Score=186.30  Aligned_cols=143  Identities=16%  Similarity=0.174  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCCCcccChhhhHh---------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS---------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y~~~~~v~e~i~---------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         +...+.+..++.+++.               
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~   91 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER   91 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence            3789999999999999999999999999999999876431         1111223456666543               


Q ss_pred             ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CC
Q 025844           59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF  131 (247)
Q Consensus        59 ---~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~  131 (247)
                         +.++++.+++.......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++++++ |.
T Consensus        92 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~  166 (230)
T TIGR01184        92 RAIVEEHIALVGLTEAADKR--PGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRV  166 (230)
T ss_pred             HHHHHHHHHHcCCHHHHcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCC
Confidence               34567778886433222  345666654  899999999  999999999999 9999999998 888887654 77


Q ss_pred             eEEEEEecccccccchhHHhhhh
Q 025844          132 NVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       132 ~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      +++++    +|...+...+++.+
T Consensus       167 tii~~----sH~~~~~~~~~d~v  185 (230)
T TIGR01184       167 TVLMV----THDVDEALLLSDRV  185 (230)
T ss_pred             EEEEE----eCCHHHHHHhcCEE
Confidence            87666    46655555555533

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=5.8e-25  Score=180.98  Aligned_cols=137  Identities=23%  Similarity=0.373  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhH-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELI-----------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i-----------   57 (247)
                      -++++|||||||||||+.+++.+++.++|+|+++|++...              |.-.+...+||+|.+           
T Consensus        28 ~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGR  107 (252)
T COG4604          28 GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGR  107 (252)
T ss_pred             ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCC
Confidence            4689999999999999999999999999999999987643              111122233444444           


Q ss_pred             -------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           58 -------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        58 -------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                             .+.+.++.++|.+...+.  ++.+++|++  ..+|..+++  +.+|++||||-+ ||.....++| ++++++.
T Consensus       108 lt~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla  182 (252)
T COG4604         108 LTKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KILRRLA  182 (252)
T ss_pred             CchHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHHHHHH
Confidence                   489999999999876655  678888875  789999999  999999999999 9999999999 9999987


Q ss_pred             h-CCCeEEEEEeccccccc
Q 025844          128 S-RNFNVCAVYLLDSQFIT  145 (247)
Q Consensus       128 ~-~~~~ii~v~l~d~~~~~  145 (247)
                      + .|+++++| +||..+.+
T Consensus       183 ~el~KtiviV-lHDINfAS  200 (252)
T COG4604         183 DELGKTIVVV-LHDINFAS  200 (252)
T ss_pred             HHhCCeEEEE-EecccHHH
Confidence            5 48888777 56655543

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.92  E-value=4e-24  Score=183.22  Aligned_cols=141  Identities=15%  Similarity=0.200  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...          ..+.|       .+..++.+++.       
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~  111 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG  111 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999976421          12333       23457777653       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...+++|+  ++.||++++.  +|+++|||||++ ||+.++..+. ++++++
T Consensus       112 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~  186 (233)
T cd03258         112 VPKAEIEERVLELLELVGLEDKADAY--PAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-ALLRDI  186 (233)
T ss_pred             CCHHHHHHHHHHHHHHCCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HHHHHH
Confidence                     35677888886543332  24566654  3899999999  999999999999 9999999998 888888


Q ss_pred             HhC-CCeEEEEEecccccccchhHHhh
Q 025844          127 KSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++ |.+++++    +|...+...+++
T Consensus       187 ~~~~~~tvii~----sH~~~~~~~~~d  209 (233)
T cd03258         187 NRELGLTIVLI----THEMEVVKRICD  209 (233)
T ss_pred             HHHcCCEEEEE----eCCHHHHHHhCC
Confidence            664 7787666    355554445444

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.92  E-value=4e-24  Score=180.59  Aligned_cols=141  Identities=20%  Similarity=0.251  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-------CcccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         +.++|       .+..++.+++.        
T Consensus        27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~  106 (213)
T cd03262          27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG  106 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence            3789999999999999999999999999999999875421         22333       22356666652        


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       107 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~  181 (213)
T cd03262         107 MSKAEAEERALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DVMKDL  181 (213)
T ss_pred             CCHHHHHHHHHHHHHHcCCHhHhhhC--ccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence                     35567778886543222  234666543  899999999  999999999999 9999999988 889988


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++.|.+++++    +|...+...+++
T Consensus       182 ~~~~~tvi~~----sh~~~~~~~~~d  203 (213)
T cd03262         182 AEEGMTMVVV----THEMGFAREVAD  203 (213)
T ss_pred             HHcCCEEEEE----eCCHHHHHHhCC
Confidence            7667777665    355554445444

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.92  E-value=5.5e-24  Score=193.29  Aligned_cols=141  Identities=16%  Similarity=0.190  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCC-------CCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~-------y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..++       +++.+++.+++.            
T Consensus        29 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~  108 (353)
T PRK10851         29 QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP  108 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence            3689999999999999999999999999999999976531     1222       344567766653            


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              ++++++.+++.......  ...+++|+  +++||++++.  +|+++|+|||++ ||+.++..+. +.++++.
T Consensus       109 ~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~  183 (353)
T PRK10851        109 NAAAIKAKVTQLLEMVQLAHLADRY--PAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWLRQLH  183 (353)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHH
Confidence                    34578888887654443  24566665  4999999999  999999999999 9999999988 8888887


Q ss_pred             hC-CCeEEEEEecccccccchhHHhh
Q 025844          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++ +.++++|    +|...+...+++
T Consensus       184 ~~~g~tii~v----THd~~ea~~~~D  205 (353)
T PRK10851        184 EELKFTSVFV----THDQEEAMEVAD  205 (353)
T ss_pred             HhcCCEEEEE----eCCHHHHHHhCC
Confidence            64 7888666    466665556555

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.92  E-value=1.8e-24  Score=182.80  Aligned_cols=141  Identities=15%  Similarity=0.134  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE  106 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence            3689999999999999999999999999999999876421     12333       22457776653            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          +.++++.+++.+.....  ...++.|++  ++||++++.  +|+++|+||||+ ||+.+++.+. ++++++.+ .+
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~  181 (213)
T cd03301         107 IDERVREVAELLQIEHLLDRK--PKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLG  181 (213)
T ss_pred             HHHHHHHHHHHcCCHHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence                34567788886543322  234666543  899999999  999999999999 9999999998 88888865 47


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       182 ~tvi~~----sH~~~~~~~~~d  199 (213)
T cd03301         182 TTTIYV----THDQVEAMTMAD  199 (213)
T ss_pred             CEEEEE----eCCHHHHHHhcC
Confidence            787666    354444444433

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.91  E-value=4.1e-24  Score=179.56  Aligned_cols=129  Identities=18%  Similarity=0.149  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      +.+.|       .+..++++++.          +
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  106 (201)
T cd03231          27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV  106 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHH
Confidence            4789999999999999999999999999999999876531      12222       23457777763          5


Q ss_pred             HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        60 ~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +++++.+++.+.....  ...++++++  +++|++++.  +|+++|+||||+ ||+.+++.+. +++++++++|.+++++
T Consensus       107 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~  181 (201)
T cd03231         107 EEALARVGLNGFEDRP--VAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLT  181 (201)
T ss_pred             HHHHHHcCChhhhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            6778888987543332  345666543  899999999  999999999999 9999999998 8888886667777665

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.91  E-value=7.9e-24  Score=182.53  Aligned_cols=141  Identities=21%  Similarity=0.275  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       .+..++++++.          
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  107 (242)
T cd03295          28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK  107 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence            4689999999999999999999999999999999876421       12333       23457777653          


Q ss_pred             ------HHHHHHHcCCCC--CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 ------LEDVMEELGLGP--NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 ------~~~~l~~~~L~~--~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                            +.++++.+++.+  .....  ...++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++++
T Consensus       108 ~~~~~~~~~~l~~l~l~~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~  182 (242)
T cd03295         108 EKIRERADELLALVGLDPAEFADRY--PHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEFKRLQ  182 (242)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence                  456788888875  22222  245666654  899999999  999999999999 9999999988 8888886


Q ss_pred             hC-CCeEEEEEecccccccchhHHhh
Q 025844          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++ |.+++++    +|...+...+++
T Consensus       183 ~~~g~tvii~----sH~~~~~~~~~d  204 (242)
T cd03295         183 QELGKTIVFV----THDIDEAFRLAD  204 (242)
T ss_pred             HHcCCEEEEE----ecCHHHHHHhCC
Confidence            54 7777666    355544444444

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.91  E-value=3.7e-24  Score=178.05  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---------CCCCCC-Cc-------ccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---------~~~~~y-~~-------~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..         ...+.| ++       ..++++++.       
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~   98 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG   98 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC
Confidence            478999999999999999999999999999999986642         112233 11       236666553       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus        99 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~  173 (190)
T TIGR01166        99 LSEAEVERRVREALTAVGASGLRERP--THCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AILRRL  173 (190)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence                     35577778887543333  24566654  3899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEE
Q 025844          127 KSRNFNVCAV  136 (247)
Q Consensus       127 ~~~~~~ii~v  136 (247)
                      +++|.+++++
T Consensus       174 ~~~~~tili~  183 (190)
T TIGR01166       174 RAEGMTVVIS  183 (190)
T ss_pred             HHcCCEEEEE
Confidence            7667787666

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.91  E-value=3.3e-24  Score=183.11  Aligned_cols=141  Identities=17%  Similarity=0.081  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCCCcccChhhhHh----------------HHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVME   64 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y~~~~~v~e~i~----------------~~~~l~   64 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+...  ....+.+..++++++.                +.++++
T Consensus        49 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~  128 (224)
T cd03220          49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE  128 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999976431  2233455667777653                345666


Q ss_pred             HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025844           65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS  141 (247)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~  141 (247)
                      .+++.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.+++.+. ++++++++++.+++++    +
T Consensus       129 ~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~----s  199 (224)
T cd03220         129 FSELGDFIDLP--VKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILV----S  199 (224)
T ss_pred             HcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----e
Confidence            77886543333  245666654  899999999  999999999999 9999999988 8888886667777666    3


Q ss_pred             ccccchhHHhh
Q 025844          142 QFITDVTKFIS  152 (247)
Q Consensus       142 ~~~~d~~~~~s  152 (247)
                      |...+...+++
T Consensus       200 H~~~~~~~~~d  210 (224)
T cd03220         200 HDPSSIKRLCD  210 (224)
T ss_pred             CCHHHHHHhCC
Confidence            55544444444

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1e-24  Score=189.97  Aligned_cols=144  Identities=15%  Similarity=0.167  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc---CCCC-----CCCC-------CCcccChhhhHh----------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA-----ENFD-------YPVAMDIRELIS----------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~---d~~~-----~~~~-------y~~~~~v~e~i~----------   58 (247)
                      .++++|||||||||++|+|+|+..|+.|.|.++|.   |..+     ..++       .++.+||.+||.          
T Consensus        30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p  109 (345)
T COG1118          30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP  109 (345)
T ss_pred             EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCC
Confidence            58999999999999999999999999999999998   5432     2333       356889999985          


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              +.++++.++|+..+++...  .++++++  +++|||++.  +|++|+||||.. ||...+..+- +.++++.
T Consensus       110 ~~~~~r~rv~elL~lvqL~~la~ryP~--QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~~  184 (345)
T COG1118         110 SEAEIRARVEELLRLVQLEGLADRYPA--QLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRKLH  184 (345)
T ss_pred             ChhhHHHHHHHHHHHhcccchhhcCch--hcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HHHHHHH
Confidence                    7889999999988766543  5677654  999999999  999999999998 9999888877 7777776


Q ss_pred             h-CCCeEEEEEecccccccchhHHhhhhHH
Q 025844          128 S-RNFNVCAVYLLDSQFITDVTKFISGCMA  156 (247)
Q Consensus       128 ~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (247)
                      + .|.++++|    +|...+...+++.++.
T Consensus       185 ~~~~~ttvfV----THD~eea~~ladrvvv  210 (345)
T COG1118         185 DRLGVTTVFV----THDQEEALELADRVVV  210 (345)
T ss_pred             HhhCceEEEE----eCCHHHHHhhcceEEE
Confidence            5 48888777    4777777777664433

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.91  E-value=5.4e-24  Score=183.37  Aligned_cols=141  Identities=18%  Similarity=0.247  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..++|       .+..++++++.       
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  108 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK  108 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence            3789999999999999999999999999999999865421          12333       23456666552       


Q ss_pred             -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                       +.++++.+++.......  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  184 (243)
T TIGR02315       109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQR--ADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV  184 (243)
T ss_pred             cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence                             34567778886533222  234666644  899999999  999999999999 999999998


Q ss_pred             HHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . ++++++.+ .+.+++++    +|.......+++
T Consensus       185 ~-~~l~~~~~~~~~tiii~----tH~~~~~~~~~d  214 (243)
T TIGR02315       185 M-DYLKRINKEDGITVIIN----LHQVDLAKKYAD  214 (243)
T ss_pred             H-HHHHHHHHHcCCEEEEE----eCCHHHHHHhcC
Confidence            8 88888865 47777665    355554445544

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3.7e-24  Score=186.30  Aligned_cols=141  Identities=14%  Similarity=0.185  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCC-------CcccChhhhHh---------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS---------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y-------~~~~~v~e~i~---------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..  ..++|       .+..++.+++.               
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  107 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE  107 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH
Confidence            4789999999999999999999999999999999876521  11222       23356666553               


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (247)
                       +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .|.++
T Consensus       108 ~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tv  182 (255)
T PRK11248        108 IAHQMLKKVGLEGAEKRY--IWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQV  182 (255)
T ss_pred             HHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence             45678888886543322  345666654  899999999  999999999999 9999999998 88888754 57787


Q ss_pred             EEEEecccccccchhHHhh
Q 025844          134 CAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (247)
                      +++    +|...+...+++
T Consensus       183 iiv----sH~~~~~~~~~d  197 (255)
T PRK11248        183 LLI----THDIEEAVFMAT  197 (255)
T ss_pred             EEE----eCCHHHHHHhCC
Confidence            666    355555555555

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.91  E-value=7.2e-24  Score=180.13  Aligned_cols=141  Identities=16%  Similarity=0.181  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|       .+.+++++++.         
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~  106 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA  106 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCch
Confidence            4789999999999999999999999999999999865421        22333       23457777664         


Q ss_pred             -----HHHHHHHc-CCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        59 -----~~~~l~~~-~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                           +.++++.+ ++.......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++++.
T Consensus       107 ~~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~  181 (222)
T cd03224         107 KRKARLERVYELFPRLKERRKQL--AGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDE  181 (222)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHC
Confidence                 23455555 344322221  234666543  899999999  999999999999 9999999998 888888766


Q ss_pred             CCeEEEEEecccccccchhHHhh
Q 025844          130 NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.+++++    +|...+...+++
T Consensus       182 ~~tiii~----sH~~~~~~~~~d  200 (222)
T cd03224         182 GVTILLV----EQNARFALEIAD  200 (222)
T ss_pred             CCEEEEE----eCCHHHHHHhcc
Confidence            7777666    355554455544

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.91  E-value=3.4e-24  Score=181.03  Aligned_cols=141  Identities=20%  Similarity=0.240  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..++|       .+..++++++.            
T Consensus        25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~  104 (211)
T cd03298          25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE  104 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHH
Confidence            4689999999999999999999999999999999876421     12222       23456666552            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          +.++++.+++.+.....  ...++.|++  +.||++++.  +|+++|+|||++ ||+.++..+. ++++++++ .+
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~  179 (211)
T cd03298         105 DRQAIEVALARVGLAGLEKRL--PGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLHAETK  179 (211)
T ss_pred             HHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45677888886543322  234666543  899999999  999999999999 9999999998 88888865 47


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       180 ~tii~~----sH~~~~~~~~~d  197 (211)
T cd03298         180 MTVLMV----THQPEDAKRLAQ  197 (211)
T ss_pred             CEEEEE----ecCHHHHHhhhC
Confidence            787666    355554444444

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.91  E-value=6.4e-24  Score=194.13  Aligned_cols=141  Identities=13%  Similarity=0.109  Sum_probs=110.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...            ++..+++.+++.+++.            
T Consensus        41 e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~  120 (375)
T PRK09452         41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE  120 (375)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH
Confidence            3689999999999999999999999999999999976421            2333356778888874            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          ++++++.+++.+.....  ...+++|+  +++|||+|+.  +|+++|||||++ ||...+..+. +.++++.+ .|
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~~--p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g  195 (375)
T PRK09452        121 ITPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLG  195 (375)
T ss_pred             HHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcC
Confidence                45678888998655444  24566664  4999999999  999999999999 9999999888 88888765 48


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++++|    +|...+...+++
T Consensus       196 ~tiI~v----THd~~ea~~laD  213 (375)
T PRK09452        196 ITFVFV----THDQEEALTMSD  213 (375)
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            888766    355555555555

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.91  E-value=6.4e-24  Score=179.82  Aligned_cols=141  Identities=17%  Similarity=0.203  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..           ...+.|       .+..++.+++.      
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  103 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK  103 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence            368999999999999999999999999999999986542           112333       23456766653      


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              +.++++.+++.......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.+++.+. +++++++
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~  178 (214)
T cd03297         104 RNREDRISVDELLDLLGLDHLLNRY--PAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PELKQIK  178 (214)
T ss_pred             CHHHHHHHHHHHHHHcCCHhHhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                    45677888886533222  245666544  899999999  999999999999 9999999988 8888886


Q ss_pred             hC-CCeEEEEEecccccccchhHHhh
Q 025844          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++ |.+++++    +|...+...+++
T Consensus       179 ~~~~~tiii~----sH~~~~~~~~~d  200 (214)
T cd03297         179 KNLNIPVIFV----THDLSEAEYLAD  200 (214)
T ss_pred             HHcCcEEEEE----ecCHHHHHHhcC
Confidence            54 7777655    355544444444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.91  E-value=3.5e-24  Score=180.97  Aligned_cols=139  Identities=21%  Similarity=0.318  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~------------   58 (247)
                      +++|+||||||||||+++|+|+++|++|+|.++|.++..      ..+.|       .+..++.+++.            
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE  106 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence            689999999999999999999999999999999976431      12222       23457777653            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (247)
                          +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++++ +.
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~  180 (211)
T cd03264         107 VKARVDEVLELVNLGDRAKKK--IGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELGE-DR  180 (211)
T ss_pred             HHHHHHHHHHHCCCHHHHhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CC
Confidence                34567778886532222  345666654  899999999  999999999999 9999999998 88888865 46


Q ss_pred             eEEEEEecccccccchhHHhh
Q 025844          132 NVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       132 ~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++    +|.......+++
T Consensus       181 tii~v----sH~~~~~~~~~d  197 (211)
T cd03264         181 IVILS----THIVEDVESLCN  197 (211)
T ss_pred             EEEEE----cCCHHHHHHhCC
Confidence            76555    355444444444

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.91  E-value=2.3e-24  Score=182.26  Aligned_cols=141  Identities=18%  Similarity=0.358  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCC-C--------cccChhhhHh-------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-P--------VAMDIRELIS-------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y-~--------~~~~v~e~i~-------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.  ...++| +        ...++++++.             
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~  105 (213)
T cd03235          26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL  105 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence            478999999999999999999999999999999986531  111222 1        1235555442             


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++++
T Consensus       106 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~  180 (213)
T cd03235         106 SKADKAKVDEALERVGLSELADRQ--IGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRR  180 (213)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh
Confidence                   44567778886433222  235666654  899999999  999999999999 9999999998 88888876


Q ss_pred             CCCeEEEEEecccccccchhHHhh
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++.+++++    +|...+...+++
T Consensus       181 ~~~tvi~~----sH~~~~~~~~~d  200 (213)
T cd03235         181 EGMTILVV----THDLGLVLEYFD  200 (213)
T ss_pred             cCCEEEEE----eCCHHHHHHhcC
Confidence            67777665    455554445444

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.91  E-value=9.1e-24  Score=181.66  Aligned_cols=141  Identities=16%  Similarity=0.200  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  107 (241)
T cd03256          28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR  107 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence            4789999999999999999999999999999999876421          12333       23456666652       


Q ss_pred             -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                       +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  183 (241)
T cd03256         108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV  183 (241)
T ss_pred             hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence                             34567778886533222  234666543  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . ++++++++ .|.+++++    +|...+...+++
T Consensus       184 ~-~~l~~~~~~~~~tii~~----tH~~~~~~~~~d  213 (241)
T cd03256         184 M-DLLKRINREEGITVIVS----LHQVDLAREYAD  213 (241)
T ss_pred             H-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            8 88888865 47787666    455555555544

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.91  E-value=4.9e-24  Score=181.47  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +.++|       .+..++++++.       
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  108 (222)
T PRK10908         29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG  108 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence            4689999999999999999999999999999999875421          12333       23456766653       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...++.|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~  183 (222)
T PRK10908        109 ASGDDIRRRVSAALDKVGLLDKAKNF--PIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RLFEEF  183 (222)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence                     34677888886543222  245666544  899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++.+++++    +|...+...+++
T Consensus       184 ~~~~~tiii~----sH~~~~~~~~~d  205 (222)
T PRK10908        184 NRVGVTVLMA----THDIGLISRRSY  205 (222)
T ss_pred             HHCCCEEEEE----eCCHHHHHHhCC
Confidence            7667777666    355544444444

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.8e-24  Score=190.20  Aligned_cols=141  Identities=16%  Similarity=0.201  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-------ccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-------~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..++| ++       ..++.+++.         
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~  111 (274)
T PRK13647         32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD  111 (274)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC
Confidence            3789999999999999999999999999999999976531       22333 11       236666653         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++++
T Consensus       112 ~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~  186 (274)
T PRK13647        112 KDEVERRVEEALKAVRMWDFRDKP--PYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILDRLHN  186 (274)
T ss_pred             HHHHHHHHHHHHHHCCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHH
Confidence                   45677888887543333  345666653  899999999  999999999999 9999999998 99988876


Q ss_pred             CCCeEEEEEecccccccchhHHhh
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +|.+++++    +|.+.....+++
T Consensus       187 ~g~tili~----tH~~~~~~~~~d  206 (274)
T PRK13647        187 QGKTVIVA----THDVDLAAEWAD  206 (274)
T ss_pred             CCCEEEEE----eCCHHHHHHhCC
Confidence            68888666    466665556665

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=7e-24  Score=187.58  Aligned_cols=141  Identities=21%  Similarity=0.216  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-Cc-------ccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~~-------~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..++| ++       ..++++++.       
T Consensus        34 e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~  113 (287)
T PRK13637         34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG  113 (287)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC
Confidence            3689999999999999999999999999999999976531         22333 11       246777663       


Q ss_pred             ---------HHHHHHHcCCC--CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLG--PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 ---------~~~~l~~~~L~--~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                               +.++++.+||.  +.....  ...+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++
T Consensus       114 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~--~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~-~~l~  188 (287)
T PRK13637        114 LSEEEIENRVKRAMNIVGLDYEDYKDKS--PFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL-NKIK  188 (287)
T ss_pred             CCHHHHHHHHHHHHHHcCCCchhhccCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence                     46788889996  222222  24566664  3899999999  999999999999 9999999998 9999


Q ss_pred             HHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          125 HLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++ |.+++++    +|.+.+...+++
T Consensus       189 ~l~~~~g~tvi~v----tHd~~~~~~~~d  213 (287)
T PRK13637        189 ELHKEYNMTIILV----SHSMEDVAKLAD  213 (287)
T ss_pred             HHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            98764 8888766    466555555555

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.91  E-value=2.9e-24  Score=182.48  Aligned_cols=140  Identities=16%  Similarity=0.208  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      ..++|       .+..++++++.           
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~  108 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS  108 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence            3689999999999999999999999999999999876421      11222       23456766653           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           +.++++.+++.+.....  ...++.|+  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++++ +
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~  182 (220)
T cd03263         109 EIKEEVELLLRVLGLTDKANKR--ARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEVRK-G  182 (220)
T ss_pred             HHHHHHHHHHHHcCCHHHHhCh--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHhc-C
Confidence                 34677788886543222  34566654  3899999999  999999999999 9999999998 88888865 5


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|.......+++
T Consensus       183 ~tii~~----sH~~~~~~~~~d  200 (220)
T cd03263         183 RSIILT----THSMDEAEALCD  200 (220)
T ss_pred             CEEEEE----cCCHHHHHHhcC
Confidence            666555    465554445544

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.91  E-value=9.9e-24  Score=181.61  Aligned_cols=141  Identities=19%  Similarity=0.243  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-------CcccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..         +.+.|       .+..++.+++.        
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~  107 (240)
T PRK09493         28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRG  107 (240)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcC
Confidence            3789999999999999999999999999999999976431         12333       23456666543        


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+|+.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       108 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~  182 (240)
T PRK09493        108 ASKEEAEKQARELLAKVGLAERAHHY--PSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KVMQDL  182 (240)
T ss_pred             CCHHHHHHHHHHHHHHcCChHHHhcC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence                     35677888886543322  235666543  899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++.+++++    +|...+...+++
T Consensus       183 ~~~~~tiii~----sH~~~~~~~~~d  204 (240)
T PRK09493        183 AEEGMTMVIV----THEIGFAEKVAS  204 (240)
T ss_pred             HHcCCEEEEE----eCCHHHHHHhCC
Confidence            7667787665    465555555554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.91  E-value=8.1e-24  Score=185.49  Aligned_cols=141  Identities=18%  Similarity=0.194  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..++|       .+..++++++.      
T Consensus        51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  130 (269)
T cd03294          51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ  130 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999865421           12333       23457777663      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++
T Consensus       131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~~  205 (269)
T cd03294         131 GVPRAEREERAAEALELVGLEGWEHKY--PDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-DELLR  205 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence                      34677888886543322  234666543  899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEEEecccccccchhHHhh
Q 025844          126 LKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.+ .|.+++++    +|...+...+++
T Consensus       206 ~~~~~g~tiii~----tH~~~~~~~~~d  229 (269)
T cd03294         206 LQAELQKTIVFI----THDLDEALRLGD  229 (269)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHhcC
Confidence            865 47777655    465555555544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.91  E-value=2.5e-24  Score=187.65  Aligned_cols=141  Identities=17%  Similarity=0.176  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCC-------CcccChhhhHh----------HHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS----------LEDVM   63 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y-------~~~~~v~e~i~----------~~~~l   63 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..  ...+.|       .+..++++++.          +.+++
T Consensus        39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l  118 (257)
T PRK11247         39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL  118 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence            378999999999999999999999999999999875431  112222       33467777764          45678


Q ss_pred             HHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEec
Q 025844           64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLL  139 (247)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~  139 (247)
                      +.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++   
T Consensus       119 ~~~gl~~~~~~~--~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviiv---  190 (257)
T PRK11247        119 AAVGLADRANEW--PAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLV---  190 (257)
T ss_pred             HHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEE---
Confidence            889987643332  245666654  899999999  999999999999 9999999998 88888754 47787666   


Q ss_pred             ccccccchhHHhh
Q 025844          140 DSQFITDVTKFIS  152 (247)
Q Consensus       140 d~~~~~d~~~~~s  152 (247)
                       +|...+...+++
T Consensus       191 -sHd~~~~~~~~d  202 (257)
T PRK11247        191 -THDVSEAVAMAD  202 (257)
T ss_pred             -eCCHHHHHHhCC
Confidence             455555555555

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.3e-24  Score=193.94  Aligned_cols=141  Identities=21%  Similarity=0.210  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-------------------------------CCCCCC-Cc-
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-PV-   49 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-------------------------------~~~~~y-~~-   49 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+..                               ...++| ++ 
T Consensus        34 e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~  113 (305)
T PRK13651         34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF  113 (305)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence            368999999999999999999999999999999875431                               112333 22 


Q ss_pred             ------ccChhhhHh----------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEE
Q 025844           50 ------AMDIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVF  104 (247)
Q Consensus        50 ------~~~v~e~i~----------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lil  104 (247)
                            ..++++++.                +.++++.+||. +.....  ...+++|++  ++||++++.  +|+++||
T Consensus       114 ~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqrvalA~aL~~--~P~lLlL  189 (305)
T PRK13651        114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS--PFELSGGQKRRVALAGILAM--EPDFLVF  189 (305)
T ss_pred             cccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEE
Confidence                  236776663                56788899996 333222  345666654  899999999  9999999


Q ss_pred             eCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ||||+ ||+.++..+. ++++++++.|.+++++    +|.+.....+++
T Consensus       190 DEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiiv----tHd~~~~~~~ad  233 (305)
T PRK13651        190 DEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILV----THDLDNVLEWTK  233 (305)
T ss_pred             eCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eeCHHHHHHhCC
Confidence            99999 9999999988 8899987678888766    366555556655

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=180.88  Aligned_cols=141  Identities=14%  Similarity=0.226  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|       .+..++.+++.         
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  109 (241)
T PRK10895         30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL  109 (241)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccccc
Confidence            4789999999999999999999999999999999866421        12333       22346665542         


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              +.++++.+++.......  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++.++
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~  184 (241)
T PRK10895        110 SAEQREDRANELMEEFHIEHLRDSM--GQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RIIEHLR  184 (241)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHhhcc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                    45567777776532222  245666654  899999999  999999999999 9999999988 8888887


Q ss_pred             hCCCeEEEEEecccccccchhHHhh
Q 025844          128 SRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++|.+++++    +|...+...+++
T Consensus       185 ~~g~tiii~----sH~~~~~~~~~d  205 (241)
T PRK10895        185 DSGLGVLIT----DHNVRETLAVCE  205 (241)
T ss_pred             hcCCEEEEE----EcCHHHHHHhcC
Confidence            667787666    355544445444

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=1.1e-23  Score=177.33  Aligned_cols=129  Identities=13%  Similarity=0.077  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCC-------CCcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~-------y~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      +.+.       +.+..++.+++.           
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~  107 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDD  107 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHH
Confidence            3689999999999999999999999999999999876421      1122       233457777653           


Q ss_pred             --HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844           59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (247)
Q Consensus        59 --~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (247)
                        ++++++.+|+.+.....  ...++.|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++++++++.+.++
T Consensus       108 ~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ti  182 (204)
T PRK13538        108 EALWEALAQVGLAGFEDVP--VRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMV  182 (204)
T ss_pred             HHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEE
Confidence              45678888886543222  345666543  899999999  999999999999 9999999998 8888886667777


Q ss_pred             EEE
Q 025844          134 CAV  136 (247)
Q Consensus       134 i~v  136 (247)
                      +++
T Consensus       183 ii~  185 (204)
T PRK13538        183 ILT  185 (204)
T ss_pred             EEE
Confidence            666

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=8.1e-24  Score=187.15  Aligned_cols=143  Identities=14%  Similarity=0.155  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..++| ++       ..++.+++.     
T Consensus        34 e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~  113 (287)
T PRK13641         34 SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN  113 (287)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHH
Confidence            3689999999999999999999999999999999976421           12333 11       246666653     


Q ss_pred             -----------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 -----------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                 ++++++.+++. ......  ...+++|++  ++||++++.  +|++|||||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l  188 (287)
T PRK13641        114 FGFSEDEAKEKALKWLKKVGLSEDLISKS--PFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM-QLF  188 (287)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence                       46678888886 333222  235666654  899999999  999999999999 9999999988 888


Q ss_pred             HHHHhCCCeEEEEEecccccccchhHHhhhh
Q 025844          124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      +++++.|.+++++    +|.+.+...+++.+
T Consensus       189 ~~l~~~g~tvliv----sH~~~~~~~~~d~v  215 (287)
T PRK13641        189 KDYQKAGHTVILV----THNMDDVAEYADDV  215 (287)
T ss_pred             HHHHhCCCEEEEE----eCCHHHHHHhCCEE
Confidence            9887668888665    46666666666633

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.91  E-value=1.7e-23  Score=181.17  Aligned_cols=141  Identities=17%  Similarity=0.219  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCC-------CcccChhhhHh--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDY-------PVAMDIRELIS--   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y-------~~~~~v~e~i~--   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...               ..++|       .+..++.+++.  
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (250)
T PRK11264         30 EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence            4689999999999999999999999999999998865321               12233       23456766652  


Q ss_pred             ---------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                     +.++++.+|+.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-  184 (250)
T PRK11264        110 PVIVKGEPKEEATARARELLAKVGLAGKETSY--PRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVL-  184 (250)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC--hhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                           34567778886543222  245666654  899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++.++|.+++++    +|...+...+++
T Consensus       185 ~~l~~~~~~~~tvi~~----tH~~~~~~~~~d  212 (250)
T PRK11264        185 NTIRQLAQEKRTMVIV----THEMSFARDVAD  212 (250)
T ss_pred             HHHHHHHhcCCEEEEE----eCCHHHHHHhcC
Confidence            8888887667777665    355544444444

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.5e-23  Score=192.91  Aligned_cols=143  Identities=19%  Similarity=0.217  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..           ..++|       ++..|+++++.      
T Consensus        55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~  134 (400)
T PRK10070         55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA  134 (400)
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999976421           13333       33567887764      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|++  +.||++++.  +|++||+||||+ ||+.++..+. +++++
T Consensus       135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~--~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~~L~~  209 (400)
T PRK10070        135 GINAEERREKALDALRQVGLENYAHSY--PDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-DELVK  209 (400)
T ss_pred             CCCHHHHHHHHHHHHHHcCCChhhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHH
Confidence                      34678888997654333  245666654  899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEEEecccccccchhHHhhhh
Q 025844          126 LKS-RNFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      +++ .+.+++++    +|.+.+...+++.+
T Consensus       210 l~~~~g~TIIiv----THd~~~~~~~~Dri  235 (400)
T PRK10070        210 LQAKHQRTIVFI----SHDLDEAMRIGDRI  235 (400)
T ss_pred             HHHHCCCeEEEE----ECCHHHHHHhCCEE
Confidence            864 47888666    46555555555543

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.91  E-value=1.5e-23  Score=183.73  Aligned_cols=141  Identities=17%  Similarity=0.241  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----------CCCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----------~~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..          ...+.|       .+..++.+++.       
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~  113 (269)
T PRK11831         34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT  113 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence            378999999999999999999999999999999986542          112333       23457777653       


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  188 (269)
T PRK11831        114 QLPAPLLHSTVMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-KLISE  188 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence                      23467778886543332  345676654  899999999  999999999999 9999999998 88888


Q ss_pred             HHhC-CCeEEEEEecccccccchhHHhh
Q 025844          126 LKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++ |.+++++    +|...+...+++
T Consensus       189 ~~~~~g~tiiiv----sH~~~~~~~~~d  212 (269)
T PRK11831        189 LNSALGVTCVVV----SHDVPEVLSIAD  212 (269)
T ss_pred             HHHhcCcEEEEE----ecCHHHHHHhhC
Confidence            8654 7787666    355554445544

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.3e-23  Score=182.25  Aligned_cols=141  Identities=16%  Similarity=0.153  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|       .+..++.+++.         
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  111 (255)
T PRK11300         32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT  111 (255)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence            4789999999999999999999999999999999976421        11222       22456666543         


Q ss_pred             ----------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844           59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF  113 (247)
Q Consensus        59 ----------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~  113 (247)
                                            +.++++.+|+.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~  187 (255)
T PRK11300        112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--AGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK  187 (255)
T ss_pred             hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence                                  23456677776533222  234666543  899999999  999999999999 9999


Q ss_pred             hHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       114 ~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++..+. +++.+++++ |.+++++    +|...+...+++
T Consensus       188 ~~~~l~-~~L~~~~~~~~~tii~~----sH~~~~~~~~~d  222 (255)
T PRK11300        188 ETKELD-ELIAELRNEHNVTVLLI----EHDMKLVMGISD  222 (255)
T ss_pred             HHHHHH-HHHHHHHhhcCCEEEEE----eCCHHHHHHhCC
Confidence            999998 888888764 7788666    466555555554

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.1e-23  Score=191.41  Aligned_cols=143  Identities=17%  Similarity=0.236  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..           ...++|       ++.+++++++.      
T Consensus        24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  103 (354)
T TIGR02142        24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA  103 (354)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence            478999999999999999999999999999999986542           112223       33567887764      


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++|||||++ ||+.++..+. +++++++
T Consensus       104 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~l~  178 (354)
T TIGR02142       104 RPSERRISFERVIELLGIGHLLGRL--PGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYLERLH  178 (354)
T ss_pred             ChhHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHH
Confidence                    45678888987654433  245666654  999999999  999999999999 9999999998 8888886


Q ss_pred             hC-CCeEEEEEecccccccchhHHhhhh
Q 025844          128 SR-NFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      ++ |.+++++    +|...+...+++.+
T Consensus       179 ~~~g~tiiiv----tH~~~~~~~~~d~i  202 (354)
T TIGR02142       179 AEFGIPILYV----SHSLQEVLRLADRV  202 (354)
T ss_pred             HhcCCEEEEE----ecCHHHHHHhCCEE
Confidence            64 7777666    45555555555533

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.91  E-value=5.3e-24  Score=181.39  Aligned_cols=141  Identities=15%  Similarity=0.208  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---CCCCC-------CcccChhhhHh------------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~------------~~   60 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...   ..+.|       .+..++++++.            +.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~  106 (223)
T TIGR03740        27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID  106 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence            4789999999999999999999999999999999865421   12222       23457777764            45


Q ss_pred             HHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844           61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        61 ~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      ++++.+++.+.....  ...+++|++  +.+|++++.  +|+++|+|||++ ||+.++..+. +++++++++|.+++++ 
T Consensus       107 ~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~-  180 (223)
T TIGR03740       107 EVLNIVDLTNTGKKK--AKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILS-  180 (223)
T ss_pred             HHHHHcCCcHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE-
Confidence            678888887643332  345666543  899999999  999999999999 9999999998 8888887667777655 


Q ss_pred             ecccccccchhHHhh
Q 025844          138 LLDSQFITDVTKFIS  152 (247)
Q Consensus       138 l~d~~~~~d~~~~~s  152 (247)
                         +|...+...+++
T Consensus       181 ---sH~~~~~~~~~d  192 (223)
T TIGR03740       181 ---SHILSEVQQLAD  192 (223)
T ss_pred             ---cCCHHHHHHhcC
Confidence               455555555555

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=1.3e-23  Score=178.21  Aligned_cols=141  Identities=15%  Similarity=0.087  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-------CcccChhhhHh-------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~-------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...    ..+.|       .+..++.+++.             
T Consensus        38 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~  117 (214)
T PRK13543         38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM  117 (214)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHH
Confidence            3689999999999999999999999999999999875431    12332       23457777653             


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      ++++++.+++.+.....  ...+++|++  +++|++++.  +|+++|+|||++ ||+.+++.+. ++++++++++.++++
T Consensus       118 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii  192 (214)
T PRK13543        118 PGSALAIVGLAGYEDTL--VRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALV  192 (214)
T ss_pred             HHHHHHHcCChhhccCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence            35677788886543332  245666543  899999999  999999999999 9999999888 888888777777766


Q ss_pred             EEecccccccchhHHhh
Q 025844          136 VYLLDSQFITDVTKFIS  152 (247)
Q Consensus       136 v~l~d~~~~~d~~~~~s  152 (247)
                      +    +|...+...+++
T Consensus       193 ~----sH~~~~~~~~~~  205 (214)
T PRK13543        193 T----THGAYAAPPVRT  205 (214)
T ss_pred             E----ecChhhhhhhcc
Confidence            5    466655555554

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.4e-23  Score=180.09  Aligned_cols=129  Identities=15%  Similarity=0.164  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..           ..++|       .+..++++++.      
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  115 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG  115 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999976421           22333       23457777653      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+|+.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  190 (233)
T PRK11629        116 KKKPAEINSRALEMLAAVGLEHRANHR--PSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-QLLGE  190 (233)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      45678888887543332  245666654  899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEE
Q 025844          126 LKS-RNFNVCAV  136 (247)
Q Consensus       126 l~~-~~~~ii~v  136 (247)
                      +++ .|.+++++
T Consensus       191 ~~~~~g~tvii~  202 (233)
T PRK11629        191 LNRLQGTAFLVV  202 (233)
T ss_pred             HHHhCCCEEEEE
Confidence            865 47788666

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.3e-24  Score=192.40  Aligned_cols=141  Identities=16%  Similarity=0.205  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..           ..++| ++       ..++.+++.     
T Consensus        33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~  112 (288)
T PRK13643         33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQN  112 (288)
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHH
Confidence            3689999999999999999999999999999999976521           12333 11       136666653     


Q ss_pred             -----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 -----------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                 +.++++.+++.+ .....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~-~~l  187 (288)
T PRK13643        113 FGIPKEKAEKIAAEKLEMVGLADEFWEKS--PFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM-QLF  187 (288)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhhccCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHH
Confidence                       456778888853 32222  245666543  999999999  999999999999 9999999998 889


Q ss_pred             HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++|.+|+++    +|.+.+...+++
T Consensus       188 ~~l~~~g~til~v----tHd~~~~~~~~d  212 (288)
T PRK13643        188 ESIHQSGQTVVLV----THLMDDVADYAD  212 (288)
T ss_pred             HHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            9987678888766    466655556655

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.91  E-value=1.9e-23  Score=174.96  Aligned_cols=129  Identities=19%  Similarity=0.139  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      ..+.|       .+..++.+++.           
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  106 (198)
T TIGR01189        27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR  106 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHH
Confidence            4689999999999999999999999999999999876421      12222       23467777653           


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                       +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++++||||+ ||+.++..+. +++++++++|.+++
T Consensus       107 ~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii  181 (198)
T TIGR01189       107 TIEDALAAVGLTGFEDLP--AAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVL  181 (198)
T ss_pred             HHHHHHHHcCCHHHhcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence             45677788887543332  345666654  899999999  999999999999 9999999888 88888866677776


Q ss_pred             EE
Q 025844          135 AV  136 (247)
Q Consensus       135 ~v  136 (247)
                      ++
T Consensus       182 ~~  183 (198)
T TIGR01189       182 LT  183 (198)
T ss_pred             EE
Confidence            66

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.91  E-value=9.5e-24  Score=179.38  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..++|       .+..++++++.      
T Consensus        32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  111 (221)
T TIGR02211        32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG  111 (221)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999876421           22333       23456776653      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+|+.+.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.++..+. +++++
T Consensus       112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~  186 (221)
T TIGR02211       112 KKSVKEAKERAYEMLEKVGLEHRINHR--PSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-DLMLE  186 (221)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence                      34677888887543333  245666654  899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEE
Q 025844          126 LKS-RNFNVCAV  136 (247)
Q Consensus       126 l~~-~~~~ii~v  136 (247)
                      +++ .+.+++++
T Consensus       187 ~~~~~~~tii~~  198 (221)
T TIGR02211       187 LNRELNTSFLVV  198 (221)
T ss_pred             HHHhcCCEEEEE
Confidence            865 47777666

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.91  E-value=2.1e-23  Score=179.20  Aligned_cols=129  Identities=19%  Similarity=0.267  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      ..++|       .+..++++++.           
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~  107 (236)
T TIGR03864        28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA  107 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence            3689999999999999999999999999999999875421      12223       23456666653           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-C
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R  129 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~  129 (247)
                           +.++++.+|+.+.....  ...+++|+  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++++ .
T Consensus       108 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~  182 (236)
T TIGR03864       108 EARERIAALLARLGLAERADDK--VRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQ  182 (236)
T ss_pred             HHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhC
Confidence                 35677888887543333  24566654  3899999999  999999999999 9999999998 88888864 5


Q ss_pred             CCeEEEE
Q 025844          130 NFNVCAV  136 (247)
Q Consensus       130 ~~~ii~v  136 (247)
                      |.+++++
T Consensus       183 ~~tiii~  189 (236)
T TIGR03864       183 GLSVLWA  189 (236)
T ss_pred             CCEEEEE
Confidence            7777666

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=190.79  Aligned_cols=141  Identities=14%  Similarity=0.224  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..           ...++|       .+.+++++++.      
T Consensus        25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  104 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS  104 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh
Confidence            378999999999999999999999999999999986542           122333       34568888774      


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          ++++++.+++.+.....  ...+++|+  +++||++++.  +|+++|||||++ ||+.++..+. ++++++.++ +
T Consensus       105 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g  179 (352)
T PRK11144        105 MVAQFDKIVALLGIEPLLDRY--PGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLAREIN  179 (352)
T ss_pred             hHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                56788899997654333  24566664  4999999999  999999999999 9999999988 888888654 7


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       180 ~tii~v----THd~~~~~~~~d  197 (352)
T PRK11144        180 IPILYV----SHSLDEILRLAD  197 (352)
T ss_pred             CeEEEE----ecCHHHHHHhCC
Confidence            787666    455555555555

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=2.1e-23  Score=190.94  Aligned_cols=142  Identities=13%  Similarity=0.119  Sum_probs=110.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            ++..+++.+|+.|++.            
T Consensus        46 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~  125 (377)
T PRK11607         46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE  125 (377)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            3689999999999999999999999999999999976421            2223355778888875            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          +.++++.+++.+.....  ...+++|+  +++|||+++.  +|++||||||++ ||...+..+. +.++++.+ .|
T Consensus       126 ~~~~v~~~l~~l~L~~~~~~~--~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  200 (377)
T PRK11607        126 IASRVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDILERVG  200 (377)
T ss_pred             HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45778888998765444  24566664  4999999999  999999999999 9999999888 66666644 57


Q ss_pred             CeEEEEEecccccccchhHHhhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      .++++|    +|...+...+++.
T Consensus       201 ~tii~v----THd~~ea~~laDr  219 (377)
T PRK11607        201 VTCVMV----THDQEEAMTMAGR  219 (377)
T ss_pred             CEEEEE----cCCHHHHHHhCCE
Confidence            888666    4666665566553

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=2.5e-23  Score=174.54  Aligned_cols=129  Identities=10%  Similarity=0.075  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|+++|.+...      +.+.|       .+..++++++.           
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~  107 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG  107 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHH
Confidence            4689999999999999999999999999999999976531      12222       24567877764           


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      +.++++.+++.......  ...++.|.  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++.+.++++
T Consensus       108 ~~~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii  182 (200)
T PRK13540        108 ITELCRLFSLEHLIDYP--CGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLL  182 (200)
T ss_pred             HHHHHHHcCCchhhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence            46688888886533222  23466554  3899999999  999999999999 9999999988 888888666778766


Q ss_pred             E
Q 025844          136 V  136 (247)
Q Consensus       136 v  136 (247)
                      +
T Consensus       183 ~  183 (200)
T PRK13540        183 T  183 (200)
T ss_pred             E
Confidence            6

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.91  E-value=1.7e-23  Score=175.83  Aligned_cols=129  Identities=19%  Similarity=0.194  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.           ...+.|       .+..++++++.      
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~  104 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK  104 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence            468999999999999999999999999999999987632           112333       23457776653      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  179 (206)
T TIGR03608       105 KLSKKEKREKKKEALEKVGLNLKLKQK--IYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-DLLLE  179 (206)
T ss_pred             CCCHHHHHHHHHHHHHHcCchhhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHH
Confidence                      45678888886543333  235666543  899999999  999999999999 9999999998 88888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      +.+.+.+++++
T Consensus       180 ~~~~~~tii~~  190 (206)
T TIGR03608       180 LNDEGKTIIIV  190 (206)
T ss_pred             HHhcCCEEEEE
Confidence            87667777666

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.91  E-value=3.1e-23  Score=178.67  Aligned_cols=140  Identities=17%  Similarity=0.203  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|       .+..++++++.         
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~  108 (242)
T TIGR03411        29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV  108 (242)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence            4689999999999999999999999999999999976431        12333       23456666542         


Q ss_pred             ---------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                     +.++++.+++.+.....  ...+++|.  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-  183 (242)
T TIGR03411       109 FASLFFRLSAEEKDRIEEVLETIGLADEADRL--AGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTA-  183 (242)
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-
Confidence                           35567778887543332  24566654  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       184 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d  210 (242)
T TIGR03411       184 ELLKSLAG-KHSVVVV----EHDMEFVRSIAD  210 (242)
T ss_pred             HHHHHHhc-CCEEEEE----ECCHHHHHHhCC
Confidence            88888865 6677655    466555555555

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.90  E-value=9.6e-24  Score=178.69  Aligned_cols=141  Identities=19%  Similarity=0.269  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+.|       .+..++.+++.            
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~  104 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE  104 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence            4689999999999999999999999999999999976421     12222       23456666653            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          ++++++.+++.+.....  ...++.|+  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ +
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~  179 (213)
T TIGR01277       105 QQEKVVDAAQQVGIADYLDRL--PEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQ  179 (213)
T ss_pred             HHHHHHHHHHHcCcHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcC
Confidence                34577888886543222  23466554  3899999999  999999999999 9999999998 888888654 7


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       180 ~tii~v----sh~~~~~~~~~d  197 (213)
T TIGR01277       180 RTLLMV----THHLSDARAIAS  197 (213)
T ss_pred             CEEEEE----eCCHHHHHhhcC
Confidence            787666    355444444444

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.9e-23  Score=183.74  Aligned_cols=141  Identities=14%  Similarity=0.191  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---------CCCCCC-Cc-------ccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---------~~~~~y-~~-------~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..         ...++| ++       ..++.+++.       
T Consensus        29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~  108 (275)
T PRK13639         29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG  108 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC
Confidence            378999999999999999999999999999999997652         112333 11       236666653       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       109 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l  183 (275)
T PRK13639        109 LSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KLLYDL  183 (275)
T ss_pred             CCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence                     45678888887654433  245666643  899999999  999999999999 9999999999 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++|.+++++    +|...+...+++
T Consensus       184 ~~~~~til~v----tH~~~~~~~~~d  205 (275)
T PRK13639        184 NKEGITIIIS----THDVDLVPVYAD  205 (275)
T ss_pred             HHCCCEEEEE----ecCHHHHHHhCC
Confidence            7668888666    466555555555

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.90  E-value=4e-23  Score=188.96  Aligned_cols=146  Identities=18%  Similarity=0.205  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc----CCCC-----------CCCCC-------CcccChhhhHh--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA-----------ENFDY-------PVAMDIRELIS--   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~----d~~~-----------~~~~y-------~~~~~v~e~i~--   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.    ++..           ..++|       .+..|+++++.  
T Consensus        51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~  130 (382)
T TIGR03415        51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG  130 (382)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence            368999999999999999999999999999999985    3210           12333       44568888764  


Q ss_pred             --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                    +.++++.+||.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. +
T Consensus       131 ~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~--~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~-~  205 (382)
T TIGR03415       131 LEMQGMPEAERRKRVDEQLELVGLAQWADKK--PGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQ-D  205 (382)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-H
Confidence                          45678889997654443  245666654  899999999  999999999999 9999999998 8


Q ss_pred             HHHHHHhC-CCeEEEEEecccccccchhHHhhhhHHH
Q 025844          122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMAS  157 (247)
Q Consensus       122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (247)
                      .+.+++++ +.+++++    +|.+.+...+++.++..
T Consensus       206 ~L~~l~~~~~~TII~i----THdl~e~~~l~DrI~vl  238 (382)
T TIGR03415       206 ELLELQAKLNKTIIFV----SHDLDEALKIGNRIAIM  238 (382)
T ss_pred             HHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence            88888654 7888766    46666666666644333

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.90  E-value=9.7e-24  Score=182.86  Aligned_cols=141  Identities=15%  Similarity=0.166  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL   68 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y~~~~~v~e~i~------------~~~~l~~~~L   68 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|..++  .+........++++++.            ..++++.+++
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l  105 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI  105 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999875332  12222233457777663            3557778888


Q ss_pred             CCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc
Q 025844           69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI  144 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~  144 (247)
                      .......  ...+++|+  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++    +|.+
T Consensus       106 ~~~~~~~--~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sHd~  176 (246)
T cd03237         106 EQILDRE--VPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVV----EHDI  176 (246)
T ss_pred             HHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCH
Confidence            6433222  34566654  3899999999  999999999999 9999999988 88888865 47787666    3555


Q ss_pred             cchhHHhh
Q 025844          145 TDVTKFIS  152 (247)
Q Consensus       145 ~d~~~~~s  152 (247)
                      .....+++
T Consensus       177 ~~~~~~~d  184 (246)
T cd03237         177 IMIDYLAD  184 (246)
T ss_pred             HHHHHhCC
Confidence            54455544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.90  E-value=2.5e-23  Score=177.99  Aligned_cols=141  Identities=16%  Similarity=0.192  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..++|       ++..++.+++.         
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  106 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR  106 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc
Confidence            4789999999999999999999999999999999865421        12333       23457777664         


Q ss_pred             ----HHHHHHHcC-CCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 025844           59 ----LEDVMEELG-LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-  129 (247)
Q Consensus        59 ----~~~~l~~~~-L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-  129 (247)
                          .+++++.++ ++......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++++++ 
T Consensus       107 ~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~  181 (230)
T TIGR03410       107 SRKIPDEIYELFPVLKEMLGRR--GGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEG  181 (230)
T ss_pred             hHHHHHHHHHHHHhHHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence                234555554 33222111  234666543  899999999  999999999999 9999999998 888888764 


Q ss_pred             CCeEEEEEecccccccchhHHhh
Q 025844          130 NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.+++++    +|.......+++
T Consensus       182 ~~tii~~----sH~~~~~~~~~d  200 (230)
T TIGR03410       182 GMAILLV----EQYLDFARELAD  200 (230)
T ss_pred             CcEEEEE----eCCHHHHHHhCC
Confidence            7787666    355554444444

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.6e-24  Score=188.68  Aligned_cols=141  Identities=14%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-Cc-------ccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~~-------~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..         ..++| ++       ..++.+++.       
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~  107 (271)
T PRK13638         28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG  107 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999976521         12333 21       123444432       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~  182 (271)
T PRK13638        108 VPEAEITRRVDEALTLVDAQHFRHQP--IQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AIIRRI  182 (271)
T ss_pred             CCHHHHHHHHHHHHHHcCCHhHhcCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     34577788886543322  245666654  899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++|.+++++    +|...+...+++
T Consensus       183 ~~~g~tii~v----tH~~~~~~~~~d  204 (271)
T PRK13638        183 VAQGNHVIIS----SHDIDLIYEISD  204 (271)
T ss_pred             HHCCCEEEEE----eCCHHHHHHhCC
Confidence            7667787665    355554445554

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.9e-23  Score=179.56  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|       .+..++.+++.         
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  111 (237)
T PRK11614         32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD  111 (237)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh
Confidence            4789999999999999999999999999999999976421        12333       22356776653         


Q ss_pred             -----HHHHHHHc-CCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        59 -----~~~~l~~~-~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                           ++++++.+ ++.+....  ....+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. +++++++++
T Consensus       112 ~~~~~~~~~l~~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~  186 (237)
T PRK11614        112 QFQERIKWVYELFPRLHERRIQ--RAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQ  186 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC--chhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHC
Confidence                 23344445 34322111  1345666543  899999999  999999999999 9999999988 888888766


Q ss_pred             CCeEEEEEecccccccchhHHhh
Q 025844          130 NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      |.+++++    +|...+...+++
T Consensus       187 ~~tiii~----sH~~~~~~~~~d  205 (237)
T PRK11614        187 GMTIFLV----EQNANQALKLAD  205 (237)
T ss_pred             CCEEEEE----eCcHHHHHhhCC
Confidence            8887665    455555555555

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=192.84  Aligned_cols=145  Identities=13%  Similarity=0.191  Sum_probs=120.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~---------   58 (247)
                      -+.+++|.||||||||+++|+|+++|++|+|+++|.....               |++...+.+|+.||+-         
T Consensus        31 eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~  110 (501)
T COG3845          31 EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG  110 (501)
T ss_pred             cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence            4789999999999999999999999999999999975421               6677778889999874         


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                                ++++++++||.-+......--....++++.|.++|..  +|++|||||||+ |-|.....++ .+++.++
T Consensus       111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~~l~~l~  187 (501)
T COG3845         111 LIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-EILRRLA  187 (501)
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                      7889999999765444432112334566999999999  999999999999 9999999999 9999999


Q ss_pred             hCCCeEEEEEecccccccchhHHhhhh
Q 025844          128 SRNFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      ++|++|+++    +|.+.+...+++++
T Consensus       188 ~~G~tIi~I----THKL~Ev~~iaDrv  210 (501)
T COG3845         188 AEGKTIIFI----THKLKEVMAIADRV  210 (501)
T ss_pred             HCCCEEEEE----eccHHHHHHhhCee
Confidence            999999877    47777777776643

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.3e-23  Score=183.51  Aligned_cols=141  Identities=15%  Similarity=0.158  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..++| ++       ..++++++.     
T Consensus        34 e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~  113 (280)
T PRK13649         34 SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN  113 (280)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence            3789999999999999999999999999999999865421           12333 11       236666653     


Q ss_pred             -----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 -----------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                 ++++++.+++.+ .....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l  188 (280)
T PRK13649        114 FGVSQEEAEALAREKLALVGISESLFEKN--PFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM-TLF  188 (280)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence                       345667788863 22222  235666644  899999999  999999999999 9999999988 888


Q ss_pred             HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++.+.+++++    +|...+...+++
T Consensus       189 ~~~~~~~~tiiiv----sH~~~~~~~~~d  213 (280)
T PRK13649        189 KKLHQSGMTIVLV----THLMDDVANYAD  213 (280)
T ss_pred             HHHHHCCCEEEEE----eccHHHHHHhCC
Confidence            8887667787666    355555555555

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=8.4e-24  Score=182.27  Aligned_cols=141  Identities=19%  Similarity=0.235  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-------------CCCCCC-------CcccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-------PVAMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-------------~~~~~y-------~~~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.             ...+.|       .+..++.+++.    
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~  108 (242)
T PRK11124         29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC  108 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence            468999999999999999999999999999999997641             112333       22357776653    


Q ss_pred             -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                   +.++++.+|+.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~-~~  183 (242)
T PRK11124        109 RVLGLSKDQALARAEKLLERLRLKPYADRF--PLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SI  183 (242)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHH-HH
Confidence                         35567788886543332  235666543  899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++.+++++    +|...+...+++
T Consensus       184 l~~~~~~~~tii~~----sh~~~~~~~~~d  209 (242)
T PRK11124        184 IRELAETGITQVIV----THEVEVARKTAS  209 (242)
T ss_pred             HHHHHHcCCEEEEE----eCCHHHHHHhcC
Confidence            88887667787655    355544444444

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=1e-24  Score=179.84  Aligned_cols=142  Identities=16%  Similarity=0.259  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~~------~~~v~e~i~---------   58 (247)
                      -+++++|||||||||.+.++.|+.+|++|+|++++.|+..        -.++| +|      .+||+||+.         
T Consensus        31 EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d  110 (243)
T COG1137          31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD  110 (243)
T ss_pred             cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence            4799999999999999999999999999999999998743        34556 33      567888874         


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +++.++++++.+......  ..+++|-  ++.|||+|+.  +|++++||||++ +||.+..++. ++++.|
T Consensus       111 ~~~~~~~~~l~~LL~ef~i~hlr~~~a--~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L  185 (243)
T COG1137         111 LKKAERKEELDALLEEFHITHLRDSKA--YSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RIIKHL  185 (243)
T ss_pred             hhHHHHHHHHHHHHHHhchHHHhcCcc--cccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HHHHHH
Confidence                     457888898887654442  2455554  3999999999  999999999999 9999999987 999999


Q ss_pred             HhCCCeEEEEEecccccccchhHHhhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      +..|..|+    +..|...+--..|++
T Consensus       186 ~~rgiGvL----ITDHNVREtL~i~dR  208 (243)
T COG1137         186 KDRGIGVL----ITDHNVRETLDICDR  208 (243)
T ss_pred             HhCCceEE----EccccHHHHHhhhhe
Confidence            98898884    445777666666653

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.90  E-value=2.1e-23  Score=187.66  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=106.0

Q ss_pred             EEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh----------------
Q 025844            7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS----------------   58 (247)
Q Consensus         7 iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~----------------   58 (247)
                      |+||||||||||+++|+|+++|++|+|.++|.++..     ..++|       ++.+++++++.                
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            589999999999999999999999999999976421     22332       34567877764                


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVC  134 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii  134 (247)
                      ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++|||||++ ||+.++..+. ++++++.++ |.+++
T Consensus        81 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tii  155 (325)
T TIGR01187        81 VLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFV  155 (325)
T ss_pred             HHHHHHHcCCcchhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEE
Confidence            35678888887654443  345666654  999999999  999999999999 9999999988 888887654 78886


Q ss_pred             EEEecccccccchhHHhhh
Q 025844          135 AVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       135 ~v~l~d~~~~~d~~~~~s~  153 (247)
                      ++    +|...+...+++.
T Consensus       156 iv----THd~~e~~~~~d~  170 (325)
T TIGR01187       156 FV----THDQEEAMTMSDR  170 (325)
T ss_pred             EE----eCCHHHHHHhCCE
Confidence            66    4666555555553

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.2e-24  Score=189.62  Aligned_cols=141  Identities=16%  Similarity=0.210  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..++| ++       ..++.+++.     
T Consensus        34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~  113 (286)
T PRK13646         34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN  113 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH
Confidence            3689999999999999999999999999999999976521           12344 22       126666653     


Q ss_pred             -----------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 -----------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                 +.++++.+|+. +.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~-~~l  188 (286)
T PRK13646        114 FKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM-RLL  188 (286)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence                       45678888886 322222  234666543  999999999  999999999999 9999999998 999


Q ss_pred             HHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++ .|.+++++    +|.+.+...+++
T Consensus       189 ~~l~~~~g~tvl~v----tH~~~~~~~~~d  214 (286)
T PRK13646        189 KSLQTDENKTIILV----SHDMNEVARYAD  214 (286)
T ss_pred             HHHHHhCCCEEEEE----ecCHHHHHHhCC
Confidence            99865 48888766    466555555555

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.90  E-value=2.7e-23  Score=187.25  Aligned_cols=142  Identities=18%  Similarity=0.262  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~-----   58 (247)
                      -+++|+|+||||||||+++|+|+++|++|+|.++|.++..          ..+.|         .+.+++.+++.     
T Consensus        48 e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~  127 (331)
T PRK15079         48 ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT  127 (331)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999999999999999977531          12322         33456666642     


Q ss_pred             -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                   +.++++.+++.+.....+ ...+++|++  ++||++++.  +|++||+||||+ ||+.++..++ ++
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~-~l  203 (331)
T PRK15079        128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVV-NL  203 (331)
T ss_pred             hccCCCHHHHHHHHHHHHHHcCCChHHhcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                         456788888854221222 245666654  899999999  999999999999 9999999999 89


Q ss_pred             HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ |.++++|    +|.+.....+++
T Consensus       204 L~~l~~~~~~til~i----THdl~~~~~~~d  230 (331)
T PRK15079        204 LQQLQREMGLSLIFI----AHDLAVVKHISD  230 (331)
T ss_pred             HHHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence            9998764 8888766    466665555555

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.9e-23  Score=184.40  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~-------~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..++| +       ...++++++.       
T Consensus        33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~  112 (283)
T PRK13636         33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK  112 (283)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC
Confidence            3789999999999999999999999999999999976521         12333 1       1246666653       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++.+++.......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       113 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~l~~l  187 (283)
T PRK13636        113 LPEDEVRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KLLVEM  187 (283)
T ss_pred             CCHHHHHHHHHHHHHHCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence                     45677888887644333  345666654  899999999  999999999999 9999999998 888888


Q ss_pred             HhC-CCeEEEEEecccccccchhHHhh
Q 025844          127 KSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++ |.+++++    +|.+.+...+++
T Consensus       188 ~~~~g~tillv----sH~~~~~~~~~d  210 (283)
T PRK13636        188 QKELGLTIIIA----THDIDIVPLYCD  210 (283)
T ss_pred             HHhCCCEEEEE----ecCHHHHHHhCC
Confidence            764 7888666    466666556665

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.90  E-value=3.7e-23  Score=180.22  Aligned_cols=141  Identities=18%  Similarity=0.266  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..++|       .+..++++++.          
T Consensus        29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  108 (258)
T PRK13548         29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR  108 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCc
Confidence            4789999999999999999999999999999999875421       12222       23456776653          


Q ss_pred             ------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhh------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                            +.++++.+++.......  ...+++|+  +++||++++      .  +|+++|+||||+ ||+.++..+. +++
T Consensus       109 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~-~~l  183 (258)
T PRK13548        109 AEDDALVAAALAQVDLAHLAGRD--YPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL-RLA  183 (258)
T ss_pred             HHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence                  34577778886533222  23566654  389999999      5  899999999999 9999999998 888


Q ss_pred             HHHH-hCCCeEEEEEecccccccchhHHhh
Q 025844          124 DHLK-SRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++. +.+.+++++    +|...+...+++
T Consensus       184 ~~~~~~~~~tiii~----sH~~~~~~~~~d  209 (258)
T PRK13548        184 RQLAHERGLAVIVV----LHDLNLAARYAD  209 (258)
T ss_pred             HHHHHhcCCEEEEE----ECCHHHHHHhcC
Confidence            8886 567777666    465555555555

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.90  E-value=3.4e-23  Score=176.88  Aligned_cols=129  Identities=20%  Similarity=0.230  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+..++.+++.      
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~  116 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR  116 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999865421           12333       23356666653      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.......  ...+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       117 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  191 (228)
T PRK10584        117 GESSRQSRNGAKALLEQLGLGKRLDHL--PAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-DLLFS  191 (228)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      45677888886533222  23466654  3899999999  999999999999 9999999988 88888


Q ss_pred             HHhC-CCeEEEE
Q 025844          126 LKSR-NFNVCAV  136 (247)
Q Consensus       126 l~~~-~~~ii~v  136 (247)
                      ++++ |.+++++
T Consensus       192 ~~~~~~~tii~~  203 (228)
T PRK10584        192 LNREHGTTLILV  203 (228)
T ss_pred             HHHhcCCEEEEE
Confidence            8654 7777666

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.3e-23  Score=184.52  Aligned_cols=143  Identities=18%  Similarity=0.167  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..++| ++       ..++++++.     
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~  113 (290)
T PRK13634         34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN  113 (290)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence            3789999999999999999999999999999999976521           12333 11       236666653     


Q ss_pred             -----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 -----------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                 ++++++.++|.+ .....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~-~~L  188 (290)
T PRK13634        114 FGVSEEDAKQKAREMIELVGLPEELLARS--PFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM-EMF  188 (290)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence                       456788889863 22222  234666543  899999999  999999999999 9999999998 889


Q ss_pred             HHHHhC-CCeEEEEEecccccccchhHHhhhh
Q 025844          124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      ++++++ |.+|+++    +|.+.+...+++.+
T Consensus       189 ~~l~~~~g~tviii----tHd~~~~~~~~drv  216 (290)
T PRK13634        189 YKLHKEKGLTTVLV----THSMEDAARYADQI  216 (290)
T ss_pred             HHHHHhcCCEEEEE----eCCHHHHHHhCCEE
Confidence            888654 8888666    46666566666633

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=4.4e-23  Score=172.42  Aligned_cols=129  Identities=13%  Similarity=0.058  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCCCcccChhhhHh-----------HHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPVAMDIRELIS-----------LED   61 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y~~~~~v~e~i~-----------~~~   61 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +...+.+..++++++.           +.+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  106 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYA  106 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHH
Confidence            4789999999999999999999999999999999976421          1122234567887764           355


Q ss_pred             HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +++.+++.+.....  ...+++|++  +.+|++++.  +|+++|+|||++ +|+.++..+. ++++...+.+.+++++
T Consensus       107 ~l~~~~l~~~~~~~--~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~  179 (195)
T PRK13541        107 AIHYFKLHDLLDEK--CYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLS  179 (195)
T ss_pred             HHHHcCCHhhhccC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            66777886533322  234666543  899999999  999999999999 9999998888 7777665567777666

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.9e-23  Score=177.92  Aligned_cols=141  Identities=17%  Similarity=0.245  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+.|       .+..++.+++.            
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  105 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA  105 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence            4789999999999999999999999999999999876421     12223       22346666553            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+ .|
T Consensus       106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~  180 (232)
T PRK10771        106 QREKLHAIARQMGIEDLLARL--PGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVCQERQ  180 (232)
T ss_pred             HHHHHHHHHHHcCcHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45567778886543222  234666543  899999999  999999999999 9999999998 88888765 47


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       181 ~tiii~----sH~~~~~~~~~d  198 (232)
T PRK10771        181 LTLLMV----SHSLEDAARIAP  198 (232)
T ss_pred             CEEEEE----ECCHHHHHHhCC
Confidence            787666    355554444444

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.6e-23  Score=182.11  Aligned_cols=141  Identities=18%  Similarity=0.213  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-------cccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-------~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..++| +       ...++.+++.         
T Consensus        31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~  110 (277)
T PRK13652         31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD  110 (277)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC
Confidence            4789999999999999999999999999999999976532       12222 1       1346666663         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++++
T Consensus       111 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~  185 (277)
T PRK13652        111 EETVAHRVSSALHMLGLEELRDRV--PHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLNDLPE  185 (277)
T ss_pred             HHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   45678888887644333  235666654  899999999  999999999999 9999999998 88988876


Q ss_pred             C-CCeEEEEEecccccccchhHHhh
Q 025844          129 R-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      + |.+++++    +|...+...+++
T Consensus       186 ~~g~tvli~----tH~~~~~~~~~d  206 (277)
T PRK13652        186 TYGMTVIFS----THQLDLVPEMAD  206 (277)
T ss_pred             hcCCEEEEE----ecCHHHHHHhCC
Confidence            4 7787655    466665555655

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.90  E-value=4.9e-23  Score=176.38  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~----~~G~v~i~g~d~~~-----~~~~y---------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|    ++|+|.++|.++..     ..+.|         .+.+++.+++.      
T Consensus        13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~   92 (230)
T TIGR02770        13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL   92 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence            47899999999999999999999999    89999999976421     12222         22345444321      


Q ss_pred             ----------HHHHHHHcCCCC---CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGP---NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 ----------~~~~l~~~~L~~---~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                +.++++.+++..   .....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++
T Consensus        93 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~~  167 (230)
T TIGR02770        93 GKLSKQARALILEALEAVGLPDPEEVLKKY--PFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-KL  167 (230)
T ss_pred             CccHHHHHHHHHHHHHHcCCCchHHHHhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HH
Confidence                      456778888862   11111  234666543  899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ +.+++++    +|...+...+++
T Consensus       168 l~~~~~~~~~tiii~----sH~~~~~~~~~d  194 (230)
T TIGR02770       168 LRELRQLFGTGILLI----THDLGVVARIAD  194 (230)
T ss_pred             HHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            8888654 7777665    466555555544

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.90  E-value=2.3e-23  Score=179.18  Aligned_cols=141  Identities=18%  Similarity=0.228  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC--------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY--------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y--------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      ..+.|        .+..++++++.          
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~  127 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP  127 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence            4789999999999999999999999999999998865311      12222        23456666653          


Q ss_pred             ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                            +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++++++
T Consensus       128 ~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~  202 (236)
T cd03267         128 ARFKKRLDELSELLDLEELLDTP--VRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKEYNRE  202 (236)
T ss_pred             HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc
Confidence                  34567777876533222  245666644  899999999  999999999999 9999999998 888888654


Q ss_pred             -CCeEEEEEecccccccchhHHhh
Q 025844          130 -NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       130 -~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       +.+++++    +|.......+++
T Consensus       203 ~~~tiiiv----sH~~~~~~~~~d  222 (236)
T cd03267         203 RGTTVLLT----SHYMKDIEALAR  222 (236)
T ss_pred             CCCEEEEE----ecCHHHHHHhCC
Confidence             6777666    355544444444

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=5.2e-24  Score=187.66  Aligned_cols=129  Identities=13%  Similarity=0.138  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+...       ..++|        .+..++++++.         
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~  113 (279)
T PRK13650         34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP  113 (279)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC
Confidence            3689999999999999999999999999999999976532       12333        12346777663         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             +.++++.+|+.+......  ..+++|+  +++||++++.  +|+++|+||||+ ||+.+++.++ ++++++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~~--~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~  188 (279)
T PRK13650        114 HEEMKERVNEALELVGMQDFKEREP--ARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIKGIRD  188 (279)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCCc--ccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHH
Confidence                   466788889875433332  3466554  4899999999  999999999999 9999999998 88998876


Q ss_pred             C-CCeEEEE
Q 025844          129 R-NFNVCAV  136 (247)
Q Consensus       129 ~-~~~ii~v  136 (247)
                      + |.+++++
T Consensus       189 ~~g~tiliv  197 (279)
T PRK13650        189 DYQMTVISI  197 (279)
T ss_pred             hcCCEEEEE
Confidence            4 8888766

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.90  E-value=4.3e-23  Score=195.91  Aligned_cols=143  Identities=15%  Similarity=0.154  Sum_probs=110.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..++|       .+.+++.+++.         
T Consensus        38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  117 (510)
T PRK15439         38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS  117 (510)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence            4689999999999999999999999999999999876421        12333       23467777653         


Q ss_pred             ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844           59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (247)
Q Consensus        59 ---~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (247)
                         +.++++.+++.......  ...+++|++  ++||++++.  +|++||+||||+ ||+.++..+. +++++++++|.+
T Consensus       118 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~t  192 (510)
T PRK15439        118 MQKMKQLLAALGCQLDLDSS--AGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLAQGVG  192 (510)
T ss_pred             HHHHHHHHHHcCCCccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence               45688899997654333  345776654  999999999  999999999999 9999999998 889888777888


Q ss_pred             EEEEEecccccccchhHHhhhh
Q 025844          133 VCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       133 ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      ++++    +|.......+++.+
T Consensus       193 iiiv----tHd~~~~~~~~d~i  210 (510)
T PRK15439        193 IVFI----SHKLPEIRQLADRI  210 (510)
T ss_pred             EEEE----eCCHHHHHHhCCEE
Confidence            8666    46655555555533

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.90  E-value=5.3e-23  Score=180.10  Aligned_cols=142  Identities=18%  Similarity=0.205  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C--------cccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P--------VAMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~--------~~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| +        +..++.+++.        
T Consensus        40 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~  119 (267)
T PRK15112         40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD  119 (267)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC
Confidence            4789999999999999999999999999999999876431       12333 1        1223333321        


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+++.+...... ...++.|++  ++||++++.  +|+++|||||++ ||+.++..+. ++++++
T Consensus       120 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~  195 (267)
T PRK15112        120 LEPEQREKQIIETLRQVGLLPDHASYY-PHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLEL  195 (267)
T ss_pred             CCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence                     456788888853221111 245666554  899999999  999999999999 9999999888 888888


Q ss_pred             HhC-CCeEEEEEecccccccchhHHhh
Q 025844          127 KSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++ |.+++++    +|...+...+++
T Consensus       196 ~~~~g~tviiv----sH~~~~~~~~~d  218 (267)
T PRK15112        196 QEKQGISYIYV----TQHLGMMKHISD  218 (267)
T ss_pred             HHHcCcEEEEE----eCCHHHHHHhcC
Confidence            654 7777665    466555555555

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=5.5e-23  Score=173.47  Aligned_cols=129  Identities=21%  Similarity=0.232  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-------CcccChhhhHh------------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~------------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...    ..+.|       .+..++.+++.            +
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~  108 (207)
T PRK13539         29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI  108 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence            4689999999999999999999999999999999876321    11222       23457777653            5


Q ss_pred             HHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        60 ~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .++++.+|+.+.....  ...++.|+  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++++++|.+++++
T Consensus       109 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~  183 (207)
T PRK13539        109 AAALEAVGLAPLAHLP--FGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAA  183 (207)
T ss_pred             HHHHHHcCCHHHHcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence            6688888886532222  24566654  3899999999  999999999999 9999999998 8888876668887666

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.5e-23  Score=181.98  Aligned_cols=129  Identities=19%  Similarity=0.229  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC--------CcccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY--------PVAMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y--------~~~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..        ..++|        ....++.+++.        
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~  108 (274)
T PRK13644         29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL  108 (274)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCC
Confidence            3789999999999999999999999999999999976531        12333        11246666553        


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              +.++++.+++.......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++++
T Consensus       109 ~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~  183 (274)
T PRK13644        109 PPIEIRKRVDRALAEIGLEKYRHRS--PKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERIKKLH  183 (274)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence                    45667788886543332  245666543  899999999  999999999999 9999999998 8898887


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      +.|.+++++
T Consensus       184 ~~g~til~~  192 (274)
T PRK13644        184 EKGKTIVYI  192 (274)
T ss_pred             hCCCEEEEE
Confidence            668888666

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=4.8e-24  Score=191.34  Aligned_cols=141  Identities=17%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------------------CCCCC-Cc-------cc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PV-------AM   51 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------------------~~~~y-~~-------~~   51 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+...                       +.++| ++       ..
T Consensus        53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~  132 (320)
T PRK13631         53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD  132 (320)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence            4789999999999999999999999999999999865421                       11233 11       12


Q ss_pred             ChhhhHh----------------HHHHHHHcCCC-CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-cc
Q 025844           52 DIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE  111 (247)
Q Consensus        52 ~v~e~i~----------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD  111 (247)
                      ++++++.                +.++++.+++. ......  ...+++|+  +++||++++.  +|+++|+||||+ ||
T Consensus       133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD  208 (320)
T PRK13631        133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS--PFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD  208 (320)
T ss_pred             hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence            6666552                45678888886 222222  23466654  4999999999  999999999999 99


Q ss_pred             HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       112 ~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.+++.++ +++++++++|.+++++    +|.+.....+++
T Consensus       209 ~~~~~~l~-~~L~~l~~~g~Tiiiv----tHd~~~~~~~ad  244 (320)
T PRK13631        209 PKGEHEMM-QLILDAKANNKTVFVI----THTMEHVLEVAD  244 (320)
T ss_pred             HHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            99999999 8888887668888666    466555555555

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.90  E-value=2.7e-23  Score=177.13  Aligned_cols=141  Identities=17%  Similarity=0.215  Sum_probs=102.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..++|         .+..++++++.     
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~  111 (228)
T cd03257          32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI  111 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence            3789999999999999999999999999999999876421          12332         22356666653     


Q ss_pred             -------------HHHHHHHcCCC-CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 -------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 -------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                   +.++++.+++. +.....  ...+++|+  ++.||++++.  +|+++||||||+ ||+.++..+. +
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~  186 (228)
T cd03257         112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNRY--PHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQIL-D  186 (228)
T ss_pred             ccCCcHHHHHHHHHHHHHHHCCCChhHhhCC--chhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-H
Confidence                         12456677774 222222  23466654  3899999999  999999999999 9999999988 8


Q ss_pred             HHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ |.+++++    +|.......+++
T Consensus       187 ~l~~~~~~~~~tii~~----sH~~~~~~~~~d  214 (228)
T cd03257         187 LLKKLQEELGLTLLFI----THDLGVVAKIAD  214 (228)
T ss_pred             HHHHHHHHcCCEEEEE----eCCHHHHHHhcC
Confidence            88888764 7787666    355544444444

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.90  E-value=7e-23  Score=179.08  Aligned_cols=141  Identities=16%  Similarity=0.247  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...          +.++|         .+..++++++.     
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~  117 (265)
T TIGR02769        38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH  117 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence            3789999999999999999999999999999999865421          12332         23346666541     


Q ss_pred             ------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 ------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 ------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                  +.++++.+++.. .....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~-~~  192 (265)
T TIGR02769       118 LTSLDESEQKARIAELLDMVGLRSEDADKL--PRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL-EL  192 (265)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence                        456788888853 22222  235666543  899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++.++ |.+++++    +|.......+++
T Consensus       193 l~~~~~~~g~tiiiv----sH~~~~~~~~~d  219 (265)
T TIGR02769       193 LRKLQQAFGTAYLFI----THDLRLVQSFCQ  219 (265)
T ss_pred             HHHHHHhcCcEEEEE----eCCHHHHHHHhc
Confidence            8888654 7787666    355554445544

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.90  E-value=4.2e-23  Score=179.57  Aligned_cols=141  Identities=18%  Similarity=0.202  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE   55 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------------------~~~~~y-------~~~~~v~e   55 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..                    .+.+.|       .+..++++
T Consensus        32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e  111 (257)
T PRK10619         32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  111 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence            478999999999999999999999999999999986542                    122333       22357777


Q ss_pred             hHh-----------------HHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHh
Q 025844           56 LIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT  114 (247)
Q Consensus        56 ~i~-----------------~~~~l~~~~L~~~~-~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~  114 (247)
                      ++.                 +.++++.+|+.... ...  ...+++|++  +.||++++.  +|+++|+||||+ ||+.+
T Consensus       112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~  187 (257)
T PRK10619        112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPEL  187 (257)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHH
Confidence            753                 35678888886532 222  245666643  899999999  999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       115 ~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +..+. ++++++++.|.+++++    +|...+...+++
T Consensus       188 ~~~l~-~~l~~l~~~g~tiiiv----sH~~~~~~~~~d  220 (257)
T PRK10619        188 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS  220 (257)
T ss_pred             HHHHH-HHHHHHHhcCCEEEEE----eCCHHHHHHhcC
Confidence            99998 8889987668888766    355544444444

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.90  E-value=3e-23  Score=177.10  Aligned_cols=141  Identities=15%  Similarity=0.264  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCC-C--------cccChhhhH--------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-P--------VAMDIRELI--------------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y-~--------~~~~v~e~i--------------   57 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..  ..+.| +        ...++.+++              
T Consensus         7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~   86 (223)
T TIGR03771         7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP   86 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence            4689999999999999999999999999999999976521  12222 1        123454442              


Q ss_pred             ------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        58 ------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                            .+.++++.+++.+.....  ...++.|++  +.||++++.  +|+++|+|||++ ||+.++..+. ++++++++
T Consensus        87 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~  161 (223)
T TIGR03771        87 CVADFAAVRDALRRVGLTELADRP--VGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFIELAG  161 (223)
T ss_pred             cHHHHHHHHHHHHHhCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                  145677888887644333  234666543  899999999  999999999999 9999999998 88888876


Q ss_pred             CCCeEEEEEecccccccchhHHhh
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++.+++++    +|...+...+++
T Consensus       162 ~~~tvii~----sH~~~~~~~~~d  181 (223)
T TIGR03771       162 AGTAILMT----THDLAQAMATCD  181 (223)
T ss_pred             cCCEEEEE----eCCHHHHHHhCC
Confidence            68888666    355554455544

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.90  E-value=8.4e-24  Score=180.53  Aligned_cols=142  Identities=18%  Similarity=0.225  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC-----cCCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l-----~~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|++     +|++|+|.++|.++..         +.++| ++     ..++++++.    
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~  106 (227)
T cd03260          27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR  106 (227)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHH
Confidence            468999999999999999999999     9999999999976421         12333 11     346766653    


Q ss_pred             -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                   +.++++.+++.+..........+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~  183 (227)
T cd03260         107 LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-EL  183 (227)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                         3456777888653222210134666543  899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ .+++++    +|.......+++
T Consensus       184 l~~~~~~-~tii~~----sH~~~~~~~~~d  208 (227)
T cd03260         184 IAELKKE-YTIVIV----THNMQQAARVAD  208 (227)
T ss_pred             HHHHhhC-cEEEEE----eccHHHHHHhCC
Confidence            8888665 666555    455554445544

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=4.6e-23  Score=181.68  Aligned_cols=129  Identities=17%  Similarity=0.189  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..++|        ....++.+++.         
T Consensus        34 e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~  113 (279)
T PRK13635         34 EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP  113 (279)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC
Confidence            3689999999999999999999999999999999976532       12333        12346777663         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             +.++++.+||.+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..++ ++++++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~  188 (279)
T PRK13635        114 REEMVERVDQALRQVGMEDFLNRE--PHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVRQLKE  188 (279)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   46677888887654333  245666654  899999999  999999999999 9999999998 98999876


Q ss_pred             C-CCeEEEE
Q 025844          129 R-NFNVCAV  136 (247)
Q Consensus       129 ~-~~~ii~v  136 (247)
                      + |.+++++
T Consensus       189 ~~~~tiliv  197 (279)
T PRK13635        189 QKGITVLSI  197 (279)
T ss_pred             cCCCEEEEE
Confidence            5 7888666

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=1e-23  Score=171.59  Aligned_cols=129  Identities=19%  Similarity=0.258  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------------------CCCCCCcccChhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIREL   56 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------------------~~~~y~~~~~v~e~   56 (247)
                      ++.|||.+|||||||+|+|.=+.+|+.|.|.++|..+..                           +++.....+|+.++
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN  113 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN  113 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence            688999999999999999999999999999999854311                           33333445666666


Q ss_pred             Hh-----------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844           57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (247)
Q Consensus        57 i~-----------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~  116 (247)
                      +-                 ++.++.++|+........+  .++++  ++++|||||+.  +|++++|||||+ |||...-
T Consensus       114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElVg  189 (256)
T COG4598         114 VIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--HLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELVG  189 (256)
T ss_pred             HHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc--ccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHHH
Confidence            53                 5778889999876653333  35554  35999999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEE
Q 025844          117 PVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus       117 ~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      +++ +.++.|+++|.|.++|.
T Consensus       190 EVL-kv~~~LAeEgrTMv~VT  209 (256)
T COG4598         190 EVL-KVMQDLAEEGRTMVVVT  209 (256)
T ss_pred             HHH-HHHHHHHHhCCeEEEEe
Confidence            999 99999999999987773

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=4.8e-23  Score=180.13  Aligned_cols=141  Identities=26%  Similarity=0.400  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       .+..++.+++.          
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  117 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL  117 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence            4789999999999999999999999999999999865421       12222       22345555442          


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|+  ++.||++++.  +|+++|+||||+ ||+.+++.+. +++++
T Consensus       118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~  192 (265)
T PRK10575        118 GRFGAADREKVEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-ALVHR  192 (265)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                      34567777875432222  23466654  3899999999  999999999999 9999999998 88888


Q ss_pred             HHhC-CCeEEEEEecccccccchhHHhh
Q 025844          126 LKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++. |.+++++    +|.......+++
T Consensus       193 l~~~~~~tiii~----sH~~~~i~~~~d  216 (265)
T PRK10575        193 LSQERGLTVIAV----LHDINMAARYCD  216 (265)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            8654 7787665    466555555555

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.90  E-value=3.3e-23  Score=196.23  Aligned_cols=143  Identities=15%  Similarity=0.186  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        +.++|       .+.+++++++.         
T Consensus        31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  110 (501)
T PRK10762         31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF  110 (501)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence            4789999999999999999999999999999999866421        22333       23456665432         


Q ss_pred             -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 -----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                                 +.++++.+++.......  ...+++|++  ++||++++.  +|++|||||||+ ||+.++..+. ++++
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~  185 (501)
T PRK10762        111 GRIDWKKMYAEADKLLARLNLRFSSDKL--VGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF-RVIR  185 (501)
T ss_pred             CccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-HHHH
Confidence                       45678888987654333  346777654  899999999  999999999999 9999999998 8999


Q ss_pred             HHHhCCCeEEEEEecccccccchhHHhhhh
Q 025844          125 HLKSRNFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      ++++.|.+++++    +|...+...+++.+
T Consensus       186 ~l~~~~~tvii~----sHd~~~~~~~~d~i  211 (501)
T PRK10762        186 ELKSQGRGIVYI----SHRLKEIFEICDDV  211 (501)
T ss_pred             HHHHCCCEEEEE----eCCHHHHHHhCCEE
Confidence            987667787666    34444444444433

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.90  E-value=8.4e-23  Score=177.14  Aligned_cols=141  Identities=17%  Similarity=0.195  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE   55 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------------------~~~~~y-------~~~~~v~e   55 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..                    .+.+.|       .+..++.+
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~  106 (252)
T TIGR03005        27 EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD  106 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence            468999999999999999999999999999999986542                    112222       23456666


Q ss_pred             hHh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844           56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (247)
Q Consensus        56 ~i~-----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~  115 (247)
                      ++.                 +.++++.+++.+.....  ...++.|++  ++||++++.  +|+++|+|||++ ||+.++
T Consensus       107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~  182 (252)
T TIGR03005       107 NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM--PAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV  182 (252)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence            553                 35677788886532222  245666543  899999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          116 VPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       116 ~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ..+. ++++++.++ |.+++++    +|...+...+++
T Consensus       183 ~~l~-~~l~~~~~~~~~tiiiv----sH~~~~~~~~~d  215 (252)
T TIGR03005       183 GEVL-NVIRRLASEHDLTMLLV----THEMGFAREFAD  215 (252)
T ss_pred             HHHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHhcC
Confidence            9998 888888654 7787666    355544444444

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=6.5e-23  Score=184.54  Aligned_cols=142  Identities=19%  Similarity=0.207  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~-----   58 (247)
                      -+++|+|+||||||||+++|+|+++|++|+|.++|.+...          ..+.|         .+.+++.+++.     
T Consensus        42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~  121 (327)
T PRK11308         42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI  121 (327)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence            4789999999999999999999999999999999976521          12333         22345554431     


Q ss_pred             ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                  +.++++.+|+.+.....+ ...+++|++  ++||++++.  +|++||+||||+ ||..++..++ +++
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-p~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~-~lL  197 (327)
T PRK11308        122 NTSLSAAERREKALAMMAKVGLRPEHYDRY-PHMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL-NLM  197 (327)
T ss_pred             ccCCCHHHHHHHHHHHHHHCCCChHHhcCC-CccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH-HHH
Confidence                        577888999964221222 245666654  899999999  999999999999 9999999999 888


Q ss_pred             HHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++ .|.++++|    +|.+.....+++
T Consensus       198 ~~l~~~~g~til~i----THdl~~~~~~ad  223 (327)
T PRK11308        198 MDLQQELGLSYVFI----SHDLSVVEHIAD  223 (327)
T ss_pred             HHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence            88876 48888766    466555555555

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.90  E-value=2.3e-23  Score=179.29  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|++  +|++|+|.++|.+...        ..+.|       .+..++++++.       
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~  106 (243)
T TIGR01978        27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR  106 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence            378999999999999999999995  7999999999975421        11333       12334544331       


Q ss_pred             ----------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 ----------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                      +.++++.+++.+ ....... ..+++|++  ++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l  183 (243)
T TIGR01978       107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-EGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIV  183 (243)
T ss_pred             cccccccccHHHHHHHHHHHHHHcCCchhhcccccc-cCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHH
Confidence                            345666778863 2222211 12565543  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025844          119 LRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (247)
                      . +++++++++|.+++++
T Consensus       184 ~-~~l~~~~~~~~tvi~v  200 (243)
T TIGR01978       184 A-EGINRLREPDRSFLII  200 (243)
T ss_pred             H-HHHHHHHHCCcEEEEE
Confidence            8 8899887667787666

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=1e-23  Score=177.41  Aligned_cols=132  Identities=15%  Similarity=0.140  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHhHH-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISLE-------   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~~~-------   60 (247)
                      -+++++||||+|||||+|+|+|+.++.+|+|.+.|.|+..        ..++|       ++.+||+||+.+-       
T Consensus        30 eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~  109 (237)
T COG0410          30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK  109 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc
Confidence            4799999999999999999999999999999999998753        22333       5678888887511       


Q ss_pred             ----H-HHHHcCCCCCCchhh--hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 025844           61 ----D-VMEELGLGPNGGLIY--CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-  129 (247)
Q Consensus        61 ----~-~l~~~~L~~~~~~~~--~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-  129 (247)
                          . .=+.+.+-|....+.  ....+++|.+  ++|||||+.  +|++|+||||+. |-|.-..+++ +.+++++++ 
T Consensus       110 ~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~~  186 (237)
T COG0410         110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEG  186 (237)
T ss_pred             ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHHcC
Confidence                0 111223333211110  0123444433  899999999  999999999999 9999999999 999999865 


Q ss_pred             CCeEEEEE
Q 025844          130 NFNVCAVY  137 (247)
Q Consensus       130 ~~~ii~v~  137 (247)
                      |.+|+.|.
T Consensus       187 g~tIlLVE  194 (237)
T COG0410         187 GMTILLVE  194 (237)
T ss_pred             CcEEEEEe
Confidence            77887773

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.89  E-value=4.2e-23  Score=170.84  Aligned_cols=125  Identities=15%  Similarity=0.241  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhHhHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELISLEDVME   64 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~~~~~l~   64 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|          .+..+++|++.....  
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--  104 (182)
T cd03215          27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL--  104 (182)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence            3689999999999999999999999999999999976531        12333          222455555432110  


Q ss_pred             HcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025844           65 ELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS  141 (247)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~  141 (247)
                                      ++.+  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++++.+++++    +
T Consensus       105 ----------------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----s  161 (182)
T cd03215         105 ----------------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLI----S  161 (182)
T ss_pred             ----------------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----e
Confidence                            3333  34899999999  999999999999 9999999998 8888886667777665    4


Q ss_pred             ccccchhHHhh
Q 025844          142 QFITDVTKFIS  152 (247)
Q Consensus       142 ~~~~d~~~~~s  152 (247)
                      |...+...+++
T Consensus       162 h~~~~~~~~~d  172 (182)
T cd03215         162 SELDELLGLCD  172 (182)
T ss_pred             CCHHHHHHhCC
Confidence            55555555554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.89  E-value=1.1e-22  Score=176.97  Aligned_cols=141  Identities=18%  Similarity=0.281  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       ....++.+++.          
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  107 (256)
T TIGR03873        28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW  107 (256)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence            4789999999999999999999999999999999865421       12333       12345666542          


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  182 (256)
T TIGR03873       108 AGDSPHDAAVVDRALARTELSHLADRD--MSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-ALVRE  182 (256)
T ss_pred             cCCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence                      34466677775432222  234555543  899999999  999999999999 9999999998 88988


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhh
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++.+++++    +|...+...+++
T Consensus       183 ~~~~~~tiii~----sH~~~~~~~~~d  205 (256)
T TIGR03873       183 LAATGVTVVAA----LHDLNLAASYCD  205 (256)
T ss_pred             HHhcCCEEEEE----eCCHHHHHHhCC
Confidence            87667777665    466555555555

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=8.3e-23  Score=176.20  Aligned_cols=141  Identities=18%  Similarity=0.255  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..++| ++     ..++++++.           
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~  109 (241)
T PRK14250         30 AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV  109 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHH
Confidence            3689999999999999999999999999999999876421       12333 11     135666553           


Q ss_pred             -HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCe
Q 025844           59 -LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN  132 (247)
Q Consensus        59 -~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~  132 (247)
                       +.++++.+++.+ .....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. ++++++++ .|.+
T Consensus       110 ~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~t  184 (241)
T PRK14250        110 DVEYYLSIVGLNKEYATRD--VKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLT  184 (241)
T ss_pred             HHHHHHHHcCCCHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCE
Confidence             456788888852 22222  234666543  899999999  999999999999 9999999888 88888865 4788


Q ss_pred             EEEEEecccccccchhHHhh
Q 025844          133 VCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       133 ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++    +|...+...+++
T Consensus       185 ii~~----sH~~~~~~~~~d  200 (241)
T PRK14250        185 VIWI----THNMEQAKRIGD  200 (241)
T ss_pred             EEEE----eccHHHHHHhCC
Confidence            7666    355554445444

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.89  E-value=2.7e-22  Score=175.57  Aligned_cols=141  Identities=17%  Similarity=0.074  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-CCCCCCCCcccChhhhHh----------------HHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEE   65 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~~~~~~y~~~~~v~e~i~----------------~~~~l~~   65 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|... ..+...+.+..++.+++.                +.++++.
T Consensus        51 e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~  130 (264)
T PRK13546         51 DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEF  130 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999988521 112223334456666653                2345666


Q ss_pred             cCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844           66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (247)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (247)
                      +++++.....  ...+++|++  ++||++++.  +|+++|+|||++ ||+.++..+. +++..+++.|.+++++    +|
T Consensus       131 ~~l~~~~~~~--~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIii----sH  201 (264)
T PRK13546        131 SELGEFIYQP--VKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFV----SH  201 (264)
T ss_pred             cCCchhhcCC--cccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEE----cC
Confidence            7776543222  245666654  899999999  999999999999 9999999988 8888887678888666    35


Q ss_pred             cccchhHHhh
Q 025844          143 FITDVTKFIS  152 (247)
Q Consensus       143 ~~~d~~~~~s  152 (247)
                      .......+++
T Consensus       202 ~~~~i~~~~d  211 (264)
T PRK13546        202 NLGQVRQFCT  211 (264)
T ss_pred             CHHHHHHHcC
Confidence            5554445444

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=7e-23  Score=181.26  Aligned_cols=142  Identities=17%  Similarity=0.135  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC------------CCCCCC-Cc-------ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PV-------AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~------------~~~~~y-~~-------~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..            ...++| ++       ..++++++.    
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~  117 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV  117 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHH
Confidence            378999999999999999999999999999999986532            112333 11       225666553    


Q ss_pred             ------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 ------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 ------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                  +.++++.+++. ......  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++
T Consensus       118 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~  192 (289)
T PRK13645        118 NLGENKQEAYKKVPELLKLVQLPEDYVKRS--PFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFI-NL  192 (289)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence                        34567777873 222222  245666654  899999999  999999999999 9999999988 88


Q ss_pred             HHHHHh-CCCeEEEEEecccccccchhHHhhh
Q 025844          123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      ++++.+ .+.+++++    +|...+...+++.
T Consensus       193 l~~~~~~~~~tiiii----sH~~~~~~~~~d~  220 (289)
T PRK13645        193 FERLNKEYKKRIIMV----THNMDQVLRIADE  220 (289)
T ss_pred             HHHHHHhcCCEEEEE----ecCHHHHHHhCCE
Confidence            888865 47787666    4555555555553

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.89  E-value=7e-23  Score=168.19  Aligned_cols=109  Identities=19%  Similarity=0.296  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-Cc------ccChhhhHhHHHHHHHcCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV------AMDIRELISLEDVMEELGLG   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~------~~~v~e~i~~~~~l~~~~L~   69 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      ..+.| ++      ..++.+++.           
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-----------   95 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-----------   95 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence            3689999999999999999999999999999999875431      12333 22      234444432           


Q ss_pred             CCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                                 +++|  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.++|.+++++
T Consensus        96 -----------LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~  151 (173)
T cd03230          96 -----------LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLS  151 (173)
T ss_pred             -----------cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence                       3333  34899999999  999999999999 9999999998 8888887667777655

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1e-22  Score=189.31  Aligned_cols=146  Identities=17%  Similarity=0.218  Sum_probs=117.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~---------   58 (247)
                      -+++++|.||||||||+|+|+|.++|++|+|.++|.....               |++...|++||.||+.         
T Consensus        35 EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~  114 (500)
T COG1129          35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF  114 (500)
T ss_pred             eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence            4789999999999999999999999999999999975431               5566677889988884         


Q ss_pred             -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 -----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                                 ..++|+++++.......  ...++-+++  +.||+|+..  +++++||||||+ |.....+.++ ++++
T Consensus       115 g~id~~~m~~~A~~~l~~lg~~~~~~~~--v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf-~~ir  189 (500)
T COG1129         115 GLIDRKAMRRRARELLARLGLDIDPDTL--VGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLF-DLIR  189 (500)
T ss_pred             CccCHHHHHHHHHHHHHHcCCCCChhhh--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence                       67788888875211111  233333322  899999999  999999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEEEecccccccchhHHhhhhHHH
Q 025844          125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS  157 (247)
Q Consensus       125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (247)
                      +|+++|.++++|    ||.+.+.-.+++.+...
T Consensus       190 ~Lk~~Gv~ii~I----SHrl~Ei~~i~DritVl  218 (500)
T COG1129         190 RLKAQGVAIIYI----SHRLDEVFEIADRITVL  218 (500)
T ss_pred             HHHhCCCEEEEE----cCcHHHHHHhcCEEEEE
Confidence            999999999877    58888888888744333

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=6.7e-23  Score=170.65  Aligned_cols=140  Identities=18%  Similarity=0.287  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCC-----ceEEEeccCCCCC---------CC------CCCcccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NF------DYPVAMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~-----G~v~i~g~d~~~~---------~~------~y~~~~~v~e~i~----   58 (247)
                      -++++|||+|||||||+|++..+.....     |+|.+.|.++...         .+      |-+..++|+|++.    
T Consensus        34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r  113 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR  113 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence            4789999999999999999999877654     9999999876331         11      1122378999886    


Q ss_pred             ------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                  +++.++...|-..-  .+..+...+++|+  |+.|||+++.  +|++|++||||+ |||.+...+- +
T Consensus       114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE-e  190 (253)
T COG1117         114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE-E  190 (253)
T ss_pred             hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH-H
Confidence                        34444444432110  0111112355554  4899999999  999999999999 9999998887 9


Q ss_pred             HHHHHHhCCCeEEEEEecccccccchhHH
Q 025844          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (247)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (247)
                      ++.+|+ +..||++|    +|.+......
T Consensus       191 Li~eLk-~~yTIviV----THnmqQAaRv  214 (253)
T COG1117         191 LITELK-KKYTIVIV----THNMQQAARV  214 (253)
T ss_pred             HHHHHH-hccEEEEE----eCCHHHHHHH
Confidence            999996 56888877    3666544443

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.89  E-value=2.5e-22  Score=172.26  Aligned_cols=141  Identities=14%  Similarity=0.137  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----CCCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----~~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..     ...++|       .+..++.+++.            
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~  106 (232)
T cd03300          27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE  106 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHH
Confidence            478999999999999999999999999999999987542     122333       22446666653            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          +.++++.+++.+.....  ...++.|++  ++||++++.  +|+++|+|||++ ||+.++..+. +++++++++ |
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~  181 (232)
T cd03300         107 IKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELG  181 (232)
T ss_pred             HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence                34677788887644333  245666543  899999999  999999999999 9999999988 888888764 7


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       182 ~tiii~----sh~~~~~~~~~d  199 (232)
T cd03300         182 ITFVFV----THDQEEALTMSD  199 (232)
T ss_pred             CEEEEE----eCCHHHHHHhcC
Confidence            788666    355554444444

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=5.1e-23  Score=178.88  Aligned_cols=141  Identities=19%  Similarity=0.338  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..++|       .+..++.+++.          
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~  108 (255)
T PRK11231         29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW  108 (255)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence            3689999999999999999999999999999999865321       12222       22345555543          


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~  183 (255)
T PRK11231        109 GRLSAEDNARVNQAMEQTRINHLADRR--LTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-RLMRE  183 (255)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                      34566777776432222  234666543  899999999  999999999999 9999999988 88888


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhh
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++.+++++    +|...+...+++
T Consensus       184 l~~~~~tiii~----tH~~~~~~~~~d  206 (255)
T PRK11231        184 LNTQGKTVVTV----LHDLNQASRYCD  206 (255)
T ss_pred             HHHCCCEEEEE----ECCHHHHHHhcC
Confidence            87667777655    466665555555

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=3.4e-23  Score=177.87  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=117.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCC------CCC--------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDY--------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~------~~y--------~~~~~v~e~i~----------   58 (247)
                      -+++++|||||||||++|+++|++.|++|.|.++|.+|..+.      +++        .-+..+.+.+.          
T Consensus        51 ~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd  130 (325)
T COG4586          51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD  130 (325)
T ss_pred             cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCH
Confidence            478999999999999999999999999999999999996421      111        01222333222          


Q ss_pred             ------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-
Q 025844           59 ------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-  128 (247)
Q Consensus        59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-  128 (247)
                            .+..-+.+++++.....  +..++-|  ++..||.+|.+  +|++|+|||||- ||..++..+. +++++.++ 
T Consensus       131 ~~F~~r~~~l~eiLdl~~~lk~~--vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke~n~~  205 (325)
T COG4586         131 DEFAERLDFLTEILDLEGFLKWP--VRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKEYNEE  205 (325)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhh--hhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHHHHHh
Confidence                  44555566777554333  4445544  45889999999  999999999998 9999999988 99999875 


Q ss_pred             CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCC
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP  167 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p  167 (247)
                      .+.||    +..+|.+.|...+|.++++...+.+.++.+
T Consensus       206 ~~aTV----llTTH~~~di~~lc~rv~~I~~Gqlv~dg~  240 (325)
T COG4586         206 RQATV----LLTTHIFDDIATLCDRVLLIDQGQLVFDGT  240 (325)
T ss_pred             hCceE----EEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence            47777    456899999999999888777776665433

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=177.66  Aligned_cols=141  Identities=18%  Similarity=0.374  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.|       .+..++++++.          
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~  113 (265)
T PRK10253         34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF  113 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence            3689999999999999999999999999999999876421       12222       12345555432          


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.......  ...+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~L~~  188 (265)
T PRK10253        114 TRWRKEDEEAVTKAMQATGITHLADQS--VDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-ELLSE  188 (265)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence                      45677778886533222  24566654  3899999999  999999999999 9999999998 88888


Q ss_pred             HHhC-CCeEEEEEecccccccchhHHhh
Q 025844          126 LKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.++ +.+++++    +|.......+++
T Consensus       189 l~~~~~~tiii~----tH~~~~~~~~~d  212 (265)
T PRK10253        189 LNREKGYTLAAV----LHDLNQACRYAS  212 (265)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            8654 7777666    466655556655

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.5e-22  Score=177.35  Aligned_cols=129  Identities=13%  Similarity=0.160  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-------ccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-------~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+...       +.++| ++       ..++.+++.         
T Consensus        36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~  115 (269)
T PRK13648         36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP  115 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC
Confidence            4789999999999999999999999999999999976531       22333 11       223444331         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             +.++++.+++.+.....  ...++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++++
T Consensus       116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~  190 (269)
T PRK13648        116 YDEMHRRVSEALKQVDMLERADYE--PNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVRKVKS  190 (269)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   45678888887643333  234665543  899999999  999999999999 9999999998 88888865


Q ss_pred             C-CCeEEEE
Q 025844          129 R-NFNVCAV  136 (247)
Q Consensus       129 ~-~~~ii~v  136 (247)
                      + |.+++++
T Consensus       191 ~~~~tiiiv  199 (269)
T PRK13648        191 EHNITIISI  199 (269)
T ss_pred             hcCCEEEEE
Confidence            4 7787666

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.8e-23  Score=195.31  Aligned_cols=142  Identities=17%  Similarity=0.185  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+|+|+|+++|  ++|+|.++|.+...        ..++|       .+.+++++++.       
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  111 (506)
T PRK13549         32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP  111 (506)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence            47899999999999999999999996  89999999876421        22333       22345555431       


Q ss_pred             ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                  ++++++.+++.......  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l  186 (506)
T PRK13549        112 GGIMDYDAMYLRAQKLLAQLKLDINPATP--VGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL-DII  186 (506)
T ss_pred             cCCcCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence                        46688889987544333  356777654  899999999  999999999999 9999999999 899


Q ss_pred             HHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844          124 DHLKSRNFNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      ++++++|.+++++    +|.+.....+++.
T Consensus       187 ~~l~~~~~tvi~~----tH~~~~~~~~~d~  212 (506)
T PRK13549        187 RDLKAHGIACIYI----SHKLNEVKAISDT  212 (506)
T ss_pred             HHHHHCCCEEEEE----eCcHHHHHHhcCE
Confidence            8887677787666    2444444444443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.9e-23  Score=196.06  Aligned_cols=129  Identities=16%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..        ..++|       .+.+++++++.         
T Consensus        32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  111 (510)
T PRK09700         32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV  111 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence            4789999999999999999999999999999999866421        12333       12345555432         


Q ss_pred             --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                    +.++++.+|+.......  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~-~  186 (510)
T PRK09700        112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--VANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLF-L  186 (510)
T ss_pred             ccccccCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence                          35577888887554333  346777654  999999999  999999999999 9999999999 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025844          122 FVDHLKSRNFNVCAV  136 (247)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (247)
                      ++++++++|.+++++
T Consensus       187 ~l~~l~~~g~tiiiv  201 (510)
T PRK09700        187 IMNQLRKEGTAIVYI  201 (510)
T ss_pred             HHHHHHhCCCEEEEE
Confidence            999987778887766

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.89  E-value=1e-22  Score=192.35  Aligned_cols=144  Identities=15%  Similarity=0.173  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc--------------ccChhhhH---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI---   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~--------------~~~v~e~i---   57 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.+.|.++..       +.++| ++              ..++++++   
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  109 (490)
T PRK10938         30 DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE  109 (490)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence            3689999999999999999999999999999998765421       11222 11              24666654   


Q ss_pred             -----hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           58 -----SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        58 -----~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                           .++++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++++++
T Consensus       110 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~  184 (490)
T PRK10938        110 VKDPARCEQLAQQFGITALLDRR--FKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLASLHQS  184 (490)
T ss_pred             hhHHHHHHHHHHHcCCHhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc
Confidence                 266789999997643333  345777654  899999999  999999999999 9999999999 899998777


Q ss_pred             CCeEEEEEecccccccchhHHhhhhH
Q 025844          130 NFNVCAVYLLDSQFITDVTKFISGCM  155 (247)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (247)
                      |.+++++    +|.+.....+++.++
T Consensus       185 g~tvii~----tH~~~~~~~~~d~v~  206 (490)
T PRK10938        185 GITLVLV----LNRFDEIPDFVQFAG  206 (490)
T ss_pred             CCeEEEE----eCCHHHHHhhCCEEE
Confidence            7787666    366665556665443

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.89  E-value=2e-22  Score=172.05  Aligned_cols=129  Identities=22%  Similarity=0.342  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC----CCCCC-------CcccChhhhHhH---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL---------   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~---------   59 (247)
                      -+++|+||||||||||+++|+|+++   |++|+|.++|.++..    ..+.|       .+.+++++++..         
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~  113 (226)
T cd03234          34 QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK  113 (226)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence            4789999999999999999999999   999999999976531    12222       334577776641         


Q ss_pred             ----------HH-HHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           60 ----------ED-VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        60 ----------~~-~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++ .++.+++.+.....  ...++.|+  ++++|++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~~l~~  188 (226)
T cd03234         114 SSDAIRKKRVEDVLLRDLALTRIGGNL--VKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-STLSQ  188 (226)
T ss_pred             cchHHHHHHHHHHHHHhhcchhhhccc--ccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-HHHHH
Confidence                      12 45555554432221  23455554  3899999999  999999999999 9999999998 88888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      +++.+.+++++
T Consensus       189 ~~~~~~tiii~  199 (226)
T cd03234         189 LARRNRIVILT  199 (226)
T ss_pred             HHHCCCEEEEE
Confidence            87667777655

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.89  E-value=2.2e-22  Score=171.12  Aligned_cols=129  Identities=17%  Similarity=0.260  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++.+++.       
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~  111 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP  111 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence            4789999999999999999999999999999999875421          12332       22345554432       


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...++.+++  ++||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~  186 (220)
T TIGR02982       112 NLSYQEARERARAMLEAVGLGDHLDYY--PHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-ELMQK  186 (220)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence                      56788888887543333  234555543  899999999  999999999999 9999999988 88888


Q ss_pred             HHh-CCCeEEEE
Q 025844          126 LKS-RNFNVCAV  136 (247)
Q Consensus       126 l~~-~~~~ii~v  136 (247)
                      +.+ .+.+++++
T Consensus       187 ~~~~~~~tii~~  198 (220)
T TIGR02982       187 LAREQGCTILIV  198 (220)
T ss_pred             HHHHcCCEEEEE
Confidence            865 47777666

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.89  E-value=2.5e-22  Score=172.82  Aligned_cols=141  Identities=17%  Similarity=0.232  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++.+++.            
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~  106 (237)
T TIGR00968        27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAK  106 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHH
Confidence            4789999999999999999999999999999999876532     22222       22346666553            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          +.++++.+++.+.....  ...++.|++  +.+|++++.  +|+++|+|||++ ||+.++..+. +++++++++ +
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~  181 (237)
T TIGR00968       107 IKARVEELLELVQLEGLGDRY--PNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVH  181 (237)
T ss_pred             HHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                35677788886533222  234555543  899999999  999999999999 9999999998 888888665 7


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       182 ~tvli~----sH~~~~~~~~~d  199 (237)
T TIGR00968       182 VTTVFV----THDQEEAMEVAD  199 (237)
T ss_pred             CEEEEE----eCCHHHHHhhcC
Confidence            777665    455554445444

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.3e-22  Score=178.08  Aligned_cols=129  Identities=14%  Similarity=0.197  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..++|        .+..|+++++.         
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~  115 (271)
T PRK13632         36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP  115 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC
Confidence            3789999999999999999999999999999999976531       22333        12347777664         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.+++.+. ++++++++
T Consensus       116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~  190 (271)
T PRK13632        116 PKKMKDIIDDLAKKVGMEDYLDKE--PQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMVDLRK  190 (271)
T ss_pred             HHHHHHHHHHHHHHcCCHHHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34567788886543222  234666543  899999999  999999999999 9999999998 88888866


Q ss_pred             C-CCeEEEE
Q 025844          129 R-NFNVCAV  136 (247)
Q Consensus       129 ~-~~~ii~v  136 (247)
                      + +.+++++
T Consensus       191 ~~~~tiii~  199 (271)
T PRK13632        191 TRKKTLISI  199 (271)
T ss_pred             hcCcEEEEE
Confidence            5 4777665

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.89  E-value=4.3e-23  Score=170.50  Aligned_cols=136  Identities=19%  Similarity=0.267  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHh-HHHHHHHcCCCCCCchhhhHHhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~-~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+.......     ..+..+. +-++++.+++.+.....  ...+
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-----~~~~~i~~~~q~l~~~gl~~~~~~~--~~~L   98 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK-----ELARKIAYVPQALELLGLAHLADRP--FNEL   98 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH-----HHHHHHhHHHHHHHHcCCHhHhcCC--cccC
Confidence            46899999999999999999999999999999998765321100     1111121 23378888887543222  2345


Q ss_pred             hhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844           82 EDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus        82 ~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.|+  +++||++++.  +|+++|+||||+ ||+.++..+. +++++++++ +.+++++    +|...+...+++
T Consensus        99 S~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~----sh~~~~~~~~~d  166 (180)
T cd03214          99 SGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMV----LHDLNLAARYAD  166 (180)
T ss_pred             CHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            5554  3899999999  999999999999 9999999988 888888665 6777655    355444444444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=8.4e-23  Score=193.80  Aligned_cols=141  Identities=15%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..        ..++|          .+.+++.+++.      
T Consensus       290 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~  369 (510)
T PRK09700        290 EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK  369 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence            4689999999999999999999999999999999865421        12333          22345555432      


Q ss_pred             -------------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844           59 -------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (247)
Q Consensus        59 -------------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~  115 (247)
                                         ++++++.+++. ......  ...+++|++  +.||++++.  +|++|||||||+ ||+.++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~  445 (510)
T PRK09700        370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--ITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK  445 (510)
T ss_pred             cccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--cccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence                               35678888885 333332  245777654  899999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ..+. +++++++++|.+++++    +|.......+++
T Consensus       446 ~~l~-~~l~~l~~~g~tvi~v----sHd~~~~~~~~d  477 (510)
T PRK09700        446 AEIY-KVMRQLADDGKVILMV----SSELPEIITVCD  477 (510)
T ss_pred             HHHH-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence            9999 8999987778888666    466665666655

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.89  E-value=3.4e-22  Score=173.66  Aligned_cols=143  Identities=15%  Similarity=0.229  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhH-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELI-------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~----~~G~v~i~g~d~~~-----~~~~y---------~~~~~v~e~i-------   57 (247)
                      -+++|+||||||||||+++|+|+++|    ++|+|+++|.++..     ..+.|         .+..++.+++       
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~  109 (254)
T PRK10418         30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL  109 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence            37899999999999999999999999    99999999876421     12222         1223433332       


Q ss_pred             -------hHHHHHHHcCCCCCCc-hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           58 -------SLEDVMEELGLGPNGG-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        58 -------~~~~~l~~~~L~~~~~-~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                             .+.++++.+++.+... .......+++|++  +.||++++.  +|+++||||||+ ||+.++..+. ++++++
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~  186 (254)
T PRK10418        110 GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLLESI  186 (254)
T ss_pred             CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHH
Confidence                   1566888888875210 0111234666543  899999999  999999999999 9999999988 888888


Q ss_pred             Hh-CCCeEEEEEecccccccchhHHhh
Q 025844          127 KS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+ .|.+++++    +|...+...+++
T Consensus       187 ~~~~g~til~~----sH~~~~~~~~~d  209 (254)
T PRK10418        187 VQKRALGMLLV----THDMGVVARLAD  209 (254)
T ss_pred             HHhcCcEEEEE----ecCHHHHHHhCC
Confidence            65 47787666    465555555544

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.4e-22  Score=189.89  Aligned_cols=143  Identities=12%  Similarity=0.187  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..++|       .+..++.+++.         
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  104 (491)
T PRK10982         25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM  104 (491)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence            4789999999999999999999999999999999976421        22333       22345655432         


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++++++.+++.......  ...+++|++  ++||++++.  +|++||+||||+ ||+.++..+. +++++
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  179 (491)
T PRK10982        105 FVDQDKMYRDTKAIFDELDIDIDPRAK--VATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-TIIRK  179 (491)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      45677788886543333  356777654  899999999  999999999999 9999999998 88888


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhhhh
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      +++.|.+++++    +|...+...+++.+
T Consensus       180 l~~~g~tvii~----tH~~~~~~~~~d~i  204 (491)
T PRK10982        180 LKERGCGIVYI----SHKMEEIFQLCDEI  204 (491)
T ss_pred             HHhCCCEEEEE----ecCHHHHHHhCCEE
Confidence            87778888666    35544444555433

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.89  E-value=1.7e-22  Score=172.19  Aligned_cols=130  Identities=18%  Similarity=0.232  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe--cc--CCC-----------CCCCCC-------CcccChhhhHh--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-------PVAMDIRELIS--   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~--g~--d~~-----------~~~~~y-------~~~~~v~e~i~--   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++  |.  +..           ...++|       .+..++++++.  
T Consensus        35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  114 (224)
T TIGR02324        35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP  114 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence            3689999999999999999999999999999997  32  321           112333       22345555542  


Q ss_pred             --------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                    +.++++.+++.+..... ....++.|+  ++.||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~  190 (224)
T TIGR02324       115 LLERGVPREAARARARELLARLNIPERLWHL-PPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVV-E  190 (224)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence                          35577788886421111 123456554  3899999999  999999999999 9999999998 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025844          122 FVDHLKSRNFNVCAV  136 (247)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (247)
                      ++++++++|.+++++
T Consensus       191 ~l~~~~~~g~tii~v  205 (224)
T TIGR02324       191 LIAEAKARGAALIGI  205 (224)
T ss_pred             HHHHHHhcCCEEEEE
Confidence            888887668887666

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=3.6e-23  Score=180.88  Aligned_cols=159  Identities=19%  Similarity=0.219  Sum_probs=122.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------CCCCCCcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------~~~~y~~~~~v~e~i~------   58 (247)
                      -+.+|+|-+|||||||+|++.++++|+.|+|.++|.|+..                  |+++..|..||.+|+.      
T Consensus        55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~  134 (386)
T COG4175          55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ  134 (386)
T ss_pred             eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence            4678999999999999999999999999999999988743                  6677778889998875      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+||........  +.+++|++  +.|||||+.  +|++|++|||++ |||-.+.++..++++-
T Consensus       135 Gv~~~er~~~a~~~l~~VgL~~~~~~yp--~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQdeLl~L  210 (386)
T COG4175         135 GVPKAEREERALEALELVGLEGYADKYP--NELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQDELLEL  210 (386)
T ss_pred             CCCHHHHHHHHHHHHHHcCchhhhhcCc--ccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence                      788999999988765553  56777754  899999999  999999999999 9999999988444444


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhhhhH-HHhHHHhhccCCee
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFISGCM-ASLSAMVQLELPHV  169 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l-~~~~~~~~~~~p~i  169 (247)
                      -++.++||++|    +|.+.+.-.+-+... +--+..+..|+|..
T Consensus       211 q~~l~KTIvFi----tHDLdEAlriG~rIaimkdG~ivQ~Gtp~e  251 (386)
T COG4175         211 QAKLKKTIVFI----THDLDEALRIGDRIAIMKDGEIVQVGTPEE  251 (386)
T ss_pred             HHHhCCeEEEE----ecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence            44557888777    355554444443332 23344445555553

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.89  E-value=4.9e-23  Score=169.88  Aligned_cols=117  Identities=21%  Similarity=0.231  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-CcccChhhhHhHHHHHHHcCCCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVAMDIRELISLEDVMEELGLGPNG   72 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~   72 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..+.| +++.......++.+.+...      
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------  100 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------  100 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence            4789999999999999999999999999999999865421         12223 1111111111222221110      


Q ss_pred             chhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           73 GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        73 ~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                              ++.|  +++.||++++.  +|+++|+|||++ ||+.++..+. +++++++++ +.+++++
T Consensus       101 --------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~  157 (178)
T cd03229         101 --------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLV  157 (178)
T ss_pred             --------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence                    3333  34899999999  999999999999 9999999998 888888766 6777666

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.89  E-value=1.2e-22  Score=174.67  Aligned_cols=141  Identities=17%  Similarity=0.200  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..     ..+.|       .+..++.+++.            
T Consensus        26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~  105 (235)
T cd03299          26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE  105 (235)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHH
Confidence            4789999999999999999999999999999999976532     12222       23456666553            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          +.++++.+++.+.....  ...+++|+  +++||++++.  +|+++++|||++ ||+.++..+. ++++++.++ +
T Consensus       106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~  180 (235)
T cd03299         106 IERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFG  180 (235)
T ss_pred             HHHHHHHHHHHcCChhHHhcC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                34677788886543322  23466554  3899999999  999999999999 9999999988 888887654 7


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|...+...+++
T Consensus       181 ~tili~----tH~~~~~~~~~d  198 (235)
T cd03299         181 VTVLHV----THDFEEAWALAD  198 (235)
T ss_pred             CEEEEE----ecCHHHHHHhCC
Confidence            787655    455544444444

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.89  E-value=3e-22  Score=173.17  Aligned_cols=140  Identities=19%  Similarity=0.255  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|+     +|+|.++|.+...         +.++| ++     ..++.+++.    
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~  107 (247)
T TIGR00972        28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPR  107 (247)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHH
Confidence            478999999999999999999999998     9999999876531         22333 11     146666553    


Q ss_pred             -------------HHHHHHHcCCC----CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 -------------LEDVMEELGLG----PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 -------------~~~~l~~~~L~----~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                   +.++++.+|+.    ......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l  183 (247)
T TIGR00972       108 LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS--ALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKI  183 (247)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence                         34567778886    221111  234666543  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . ++++++++ +.+++++    +|...+...+++
T Consensus       184 ~-~~l~~~~~-~~tiiiv----sH~~~~~~~~~d  211 (247)
T TIGR00972       184 E-ELIQELKK-KYTIVIV----THNMQQAARISD  211 (247)
T ss_pred             H-HHHHHHHh-cCeEEEE----ecCHHHHHHhCC
Confidence            8 88888866 4666555    455555555544

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.89  E-value=3.1e-22  Score=174.64  Aligned_cols=141  Identities=14%  Similarity=0.161  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC------------CCCCC-------CcccChhhhHh--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-------PVAMDIRELIS--   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~------------~~~~y-------~~~~~v~e~i~--   58 (247)
                      -+++|+||||||||||+++|+|+++|+   +|+|+++|.++..            ..+.|       .+..++.+++.  
T Consensus        31 e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  110 (262)
T PRK09984         31 EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG  110 (262)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence            378999999999999999999999986   4999999965421            11233       23356665542  


Q ss_pred             ----------------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844           59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF  113 (247)
Q Consensus        59 ----------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~  113 (247)
                                            ++++++.+++.+.....  ...++.|+  ++.||++++.  +|+++|+||||+ ||+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~  186 (262)
T PRK09984        111 ALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR--VSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE  186 (262)
T ss_pred             hcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC--ccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence                                  45677778886432222  23466554  3899999999  999999999999 9999


Q ss_pred             hHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          114 THVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       114 ~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++..+. ++++++++ .|.+++++    +|.......+++
T Consensus       187 ~~~~l~-~~l~~~~~~~g~tvii~----tH~~~~~~~~~d  221 (262)
T PRK09984        187 SARIVM-DTLRDINQNDGITVVVT----LHQVDYALRYCE  221 (262)
T ss_pred             HHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            999998 88888865 47788666    355544444444

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.88  E-value=7.9e-23  Score=177.64  Aligned_cols=141  Identities=18%  Similarity=0.236  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C--CCCCCCCCcc--cChhhhH---------hHHHHHHHcCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVA--MDIRELI---------SLEDVMEELGL   68 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~--~~~~~~y~~~--~~v~e~i---------~~~~~l~~~~L   68 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+.. .  ..+...+.+.  .++.+++         .+.++++.+++
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl  110 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA  110 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence            3689999999999999999999999999999987631 1  0122111121  2455543         25677888888


Q ss_pred             CCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccc
Q 025844           69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFI  144 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~  144 (247)
                      .+.....  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ +.+++++    +|..
T Consensus       111 ~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiiv----sH~~  181 (251)
T PRK09544        111 GHLIDAP--MQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMV----SHDL  181 (251)
T ss_pred             hHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ecCH
Confidence            7543322  345666654  899999999  999999999999 9999999988 888888654 7787666    3555


Q ss_pred             cchhHHhh
Q 025844          145 TDVTKFIS  152 (247)
Q Consensus       145 ~d~~~~~s  152 (247)
                      .+...+++
T Consensus       182 ~~i~~~~d  189 (251)
T PRK09544        182 HLVMAKTD  189 (251)
T ss_pred             HHHHHhCC
Confidence            55555555

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=7.6e-23  Score=177.13  Aligned_cols=142  Identities=19%  Similarity=0.207  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC-------CCCCC-------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+...       ..++|       .+..++.+++.     
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~  109 (250)
T PRK14247         30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHh
Confidence            37899999999999999999999974     69999999976421       22333       23456776653     


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.  .........+++|++  +++|++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-  186 (250)
T PRK14247        110 NRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKIE-  186 (250)
T ss_pred             ccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         2456667777431  011111245666543  899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|.......+++
T Consensus       187 ~~l~~~~~-~~tiii~----sH~~~~~~~~~d  213 (250)
T PRK14247        187 SLFLELKK-DMTIVLV----THFPQQAARISD  213 (250)
T ss_pred             HHHHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence            88888854 6677555    455554444444

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2e-22  Score=190.96  Aligned_cols=129  Identities=16%  Similarity=0.194  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..        ..++|       .+..++.+++.         
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  110 (501)
T PRK11288         31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG  110 (501)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence            4689999999999999999999999999999999876421        22333       22345655542         


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  185 (501)
T PRK11288        111 IVNRRLLNYEAREQLEHLGVDIDPDTP--LKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIRE  185 (501)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCcCCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence                      45678888887543333  345777654  899999999  999999999999 9999999998 88888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      ++++|.+++++
T Consensus       186 ~~~~g~tiiii  196 (501)
T PRK11288        186 LRAEGRVILYV  196 (501)
T ss_pred             HHhCCCEEEEE
Confidence            87678887766

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.6e-22  Score=174.04  Aligned_cols=142  Identities=18%  Similarity=0.250  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.+...         ..++| ++     ..++++++.    
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  112 (253)
T PRK14242         33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR  112 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHH
Confidence            4789999999999999999999874     589999999876421         22333 11     136666654    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   ++++++.+++.+..  ........+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  189 (253)
T PRK14242        113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKIE-  189 (253)
T ss_pred             HcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         23345666764310  00011234565543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       190 ~~l~~~~~-~~tvii~----tH~~~~~~~~~d  216 (253)
T PRK14242        190 ELIHELKA-RYTIIIV----THNMQQAARVSD  216 (253)
T ss_pred             HHHHHHhc-CCeEEEE----EecHHHHHHhCC
Confidence            88888854 6677655    355554444444

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.88  E-value=4.2e-22  Score=173.41  Aligned_cols=141  Identities=15%  Similarity=0.191  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-----CCC-----------CCCCC-Cc--------ccChhhhH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-----~~~-----------~~~~y-~~--------~~~v~e~i   57 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+     +..           ..+.| ++        ..++.+++
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i  112 (258)
T PRK11701         33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI  112 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence            4789999999999999999999999999999999976     321           12333 11        12333332


Q ss_pred             -----------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844           58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (247)
Q Consensus        58 -----------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~  116 (247)
                                       .+.++++.+++.+ .....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~  188 (258)
T PRK11701        113 GERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL--PTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQA  188 (258)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHH
Confidence                             1456788888863 21121  234666543  899999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          117 PVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       117 ~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+. ++++++.++ |.+++++    +|.......+++
T Consensus       189 ~l~-~~l~~~~~~~~~tii~i----sH~~~~~~~~~d  220 (258)
T PRK11701        189 RLL-DLLRGLVRELGLAVVIV----THDLAVARLLAH  220 (258)
T ss_pred             HHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHhcC
Confidence            988 888887654 7777666    455554444444

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6e-23  Score=180.22  Aligned_cols=141  Identities=15%  Similarity=0.275  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-Ccc--------cChhhhH------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PVA--------MDIRELI------------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-~~~--------~~v~e~i------------   57 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...    ..++| +++        .++++++            
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~  113 (272)
T PRK15056         34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR  113 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence            3689999999999999999999999999999999865321    11222 111        1222221            


Q ss_pred             --------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        58 --------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                              .+.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.+++.+. ++++++
T Consensus       114 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~  188 (272)
T PRK15056        114 RAKKRDRQIVTAALARVDMVEFRHRQ--IGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SLLREL  188 (272)
T ss_pred             CCCHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHH
Confidence                    245678888887543332  234666543  899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++|.+++++    +|...+...+++
T Consensus       189 ~~~g~tviiv----sH~~~~~~~~~d  210 (272)
T PRK15056        189 RDEGKTMLVS----THNLGSVTEFCD  210 (272)
T ss_pred             HhCCCEEEEE----eCCHHHHHHhCC
Confidence            7667787666    455554455554

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.9e-22  Score=178.81  Aligned_cols=143  Identities=13%  Similarity=0.206  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~----~~~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i~   58 (247)
                      -+++|+||||||||||+++|+|+++    +++|+|.++|.++..           ..+.|         .+.+++.+++.
T Consensus        34 e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~  113 (326)
T PRK11022         34 EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIM  113 (326)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHH
Confidence            3689999999999999999999997    489999999977531           12333         23345543321


Q ss_pred             -----------------HHHHHHHcCCCCCCc-hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844           59 -----------------LEDVMEELGLGPNGG-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (247)
Q Consensus        59 -----------------~~~~l~~~~L~~~~~-~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~  117 (247)
                                       +.++++.+||.+... .......+++|++  ++||++++.  +|++||+||||+ ||+.++..
T Consensus       114 ~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~  191 (326)
T PRK11022        114 EAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQAQ  191 (326)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHH
Confidence                             567888999974211 1111245677654  999999999  999999999999 99999999


Q ss_pred             HHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++ ++++++++ .|.+++++    +|.+.....+++
T Consensus       192 il-~lL~~l~~~~g~til~i----THdl~~~~~~ad  222 (326)
T PRK11022        192 II-ELLLELQQKENMALVLI----THDLALVAEAAH  222 (326)
T ss_pred             HH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            99 99999875 48888766    466555555555

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.5e-23  Score=181.77  Aligned_cols=129  Identities=16%  Similarity=0.207  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-Cc-------ccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~~-------~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..++| ++       ..++.+++.        
T Consensus        37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~  116 (280)
T PRK13633         37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI  116 (280)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC
Confidence            3689999999999999999999999999999999876531        12333 11       124555442        


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                              ++++++.+|+.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. +++++++
T Consensus       117 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~  191 (280)
T PRK13633        117 PPEEIRERVDESLKKVGMYEYRRHA--PHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTIKELN  191 (280)
T ss_pred             CHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence                    45678888887644333  245666543  899999999  999999999999 9999999998 8899886


Q ss_pred             h-CCCeEEEE
Q 025844          128 S-RNFNVCAV  136 (247)
Q Consensus       128 ~-~~~~ii~v  136 (247)
                      + .|.+++++
T Consensus       192 ~~~g~tillv  201 (280)
T PRK13633        192 KKYGITIILI  201 (280)
T ss_pred             HhcCCEEEEE
Confidence            5 48888666

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2e-22  Score=190.94  Aligned_cols=141  Identities=16%  Similarity=0.198  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhH-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI-------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i-------   57 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+...        ..++|          .+..++.+++       
T Consensus       280 e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~  359 (501)
T PRK11288        280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH  359 (501)
T ss_pred             cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence            4789999999999999999999999999999999865421        12222          1224454443       


Q ss_pred             ---------------hHHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           58 ---------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        58 ---------------~~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                     .++++++.+++. ......  ...+++|++  +.||++++.  +|++|||||||+ ||+.+++.+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l  435 (501)
T PRK11288        360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--IMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI  435 (501)
T ss_pred             hcccccccChHHHHHHHHHHHHhcCcccCCccCc--cccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence                           145677888884 333333  345776654  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      + ++++++++.|.+++++    +|.......+++
T Consensus       436 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d  464 (501)
T PRK11288        436 Y-NVIYELAAQGVAVLFV----SSDLPEVLGVAD  464 (501)
T ss_pred             H-HHHHHHHhCCCEEEEE----CCCHHHHHhhCC
Confidence            9 9999998778888666    576666666665

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=6.9e-23  Score=191.75  Aligned_cols=156  Identities=19%  Similarity=0.238  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CC----------------CCCCCCcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA----------------ENFDYPVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~----------------~~~~y~~~~~v~e~i~------   58 (247)
                      -+++|+|++||||||+.|+|+|+.+|++|.|.++|.+.  ..                +.....|.+||.+.+.      
T Consensus       318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~  397 (539)
T COG1123         318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH  397 (539)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence            47899999999999999999999999999999999762  10                1122256778888775      


Q ss_pred             -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 -----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                                 +.+.++.++|++.-..+++ +.+++|++  ++|||||+.  +|+++|+|||++ ||+..+.++. +++.
T Consensus       398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl-nLl~  473 (539)
T COG1123         398 GGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL-NLLK  473 (539)
T ss_pred             cccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHH
Confidence                       6778999999986444444 46777764  999999999  999999999999 9999999999 9999


Q ss_pred             HHHhC-CCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      +++++ |.+.++|    +|.+.-...+|+               .+.|+.+..+++..
T Consensus       474 ~lq~e~g~t~lfI----SHDl~vV~~i~d---------------rv~vm~~G~iVE~G  512 (539)
T COG1123         474 DLQEELGLTYLFI----SHDLAVVRYIAD---------------RVAVMYDGRIVEEG  512 (539)
T ss_pred             HHHHHhCCEEEEE----eCCHHHHHhhCc---------------eEEEEECCeEEEeC
Confidence            99764 8888777    466655555555               55566666666544

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.88  E-value=1.6e-22  Score=191.91  Aligned_cols=141  Identities=14%  Similarity=0.240  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-C---------cccChhhhH-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELI-------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~---------~~~~v~e~i-------   57 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..++| +         +..++.+++       
T Consensus       290 e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~  369 (510)
T PRK15439        290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR  369 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence            4789999999999999999999999999999999865421        12333 1         123554432       


Q ss_pred             ------------hHHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           58 ------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        58 ------------~~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                  .++++++.+++. ......  ...+++|++  ++||++++.  +|++|||||||+ ||+.+++.+. +
T Consensus       370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~-~  444 (510)
T PRK15439        370 RGFWIKPARENAVLERYRRALNIKFNHAEQA--ARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIY-Q  444 (510)
T ss_pred             hccccChHHHHHHHHHHHHHcCCCCCCccCc--cccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHH-H
Confidence                        145678888986 333333  245776654  899999999  999999999999 9999999998 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++|.++|++    +|.+.....+++
T Consensus       445 ~l~~l~~~g~tiIiv----sHd~~~i~~~~d  471 (510)
T PRK15439        445 LIRSIAAQNVAVLFI----SSDLEEIEQMAD  471 (510)
T ss_pred             HHHHHHhCCCEEEEE----CCCHHHHHHhCC
Confidence            999987778887666    466666666655

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.7e-22  Score=176.14  Aligned_cols=129  Identities=18%  Similarity=0.225  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCC---ceEEEeccCCCC-------CCCCC--------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~---G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++   |+|.++|.+...       ..++|        .+..++.+++.      
T Consensus        34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~  113 (282)
T PRK13640         34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR  113 (282)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC
Confidence            4789999999999999999999999987   899999976532       22333        12346777663      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~  188 (282)
T PRK13640        114 AVPRPEMIKIVRDVLADVGMLDYIDSE--PANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-KLIRK  188 (282)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence                      34577888887643333  235666543  899999999  999999999999 9999999998 88888


Q ss_pred             HHhC-CCeEEEE
Q 025844          126 LKSR-NFNVCAV  136 (247)
Q Consensus       126 l~~~-~~~ii~v  136 (247)
                      +++. |.+|+++
T Consensus       189 l~~~~g~tvli~  200 (282)
T PRK13640        189 LKKKNNLTVISI  200 (282)
T ss_pred             HHHhcCCEEEEE
Confidence            8654 7888666

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.88  E-value=4.8e-22  Score=174.68  Aligned_cols=141  Identities=20%  Similarity=0.175  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC--------CceEEEeccCCCC-------CCCCC-------CcccChhhhHh--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS--   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~--------~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~--   58 (247)
                      -+++|+||||||||||+++|+|+++|+        +|+|.++|.+...       ..+.|       ....++++++.  
T Consensus        28 e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~  107 (272)
T PRK13547         28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG  107 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence            368999999999999999999999998        8999999865421       11122       12346666542  


Q ss_pred             ------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhh---------cCCCCCEEEEeCCCc
Q 025844           59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ  109 (247)
Q Consensus        59 ------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~---------~~~~p~~lilDEPt~  109 (247)
                                        +.++++.+++.+.....  ...+++|++  +.||++++         .  +|+++|+||||+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~  183 (272)
T PRK13547        108 RYPHARRAGALTHRDGEIAWQALALAGATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA  183 (272)
T ss_pred             ccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence                              34567778886543322  234666543  89999999         5  899999999999


Q ss_pred             -ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          110 -IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       110 -LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ||+.++..+. ++++++.++ +.+++++    +|...+...+++
T Consensus       184 ~LD~~~~~~l~-~~l~~~~~~~~~tviii----sH~~~~~~~~~d  223 (272)
T PRK13547        184 ALDLAHQHRLL-DTVRRLARDWNLGVLAI----VHDPNLAARHAD  223 (272)
T ss_pred             cCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence             9999999998 888888764 7887666    355555555555

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.88  E-value=6.9e-22  Score=171.42  Aligned_cols=141  Identities=16%  Similarity=0.178  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-----CCC-----------CCCCC-Cc--------ccChhhhH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-----~~~-----------~~~~y-~~--------~~~v~e~i   57 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+     +..           ..+.| ++        ..++.+++
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i  109 (253)
T TIGR02323        30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI  109 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence            4789999999999999999999999999999999865     211           12333 11        12333332


Q ss_pred             -----------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844           58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (247)
Q Consensus        58 -----------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~  116 (247)
                                       .+.++++.+++.+ .....  ...+++|++  ++||++++.  +|+++|+|||++ ||+.++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~~  185 (253)
T TIGR02323       110 GERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL--PRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQA  185 (253)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC--chhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHH
Confidence                             1456788888863 22111  245666543  999999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+. ++++++.+ .+.+++++.    |.......+++
T Consensus       186 ~l~-~~l~~~~~~~~~tii~vs----H~~~~~~~~~d  217 (253)
T TIGR02323       186 RLL-DLLRGLVRDLGLAVIIVT----HDLGVARLLAQ  217 (253)
T ss_pred             HHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhcC
Confidence            998 88888755 478887663    55444444444

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.3e-23  Score=179.43  Aligned_cols=167  Identities=15%  Similarity=0.203  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-----------CCCCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-----------~~~~~~y-------~~~~~v~e~i~------   58 (247)
                      -++++.|++||||||++++|+|+.+|+.|.|.++|.-.           ....++|       +|.++|+.|+.      
T Consensus        25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~  104 (352)
T COG4148          25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS  104 (352)
T ss_pred             ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence            47899999999999999999999999999999998422           2244555       45678888775      


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhh--hHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~--~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          .+++.+.+|++|...+...  .+++  +++++|+|||..  .|++|++|||.+ ||...+++++ -++++|.++ +
T Consensus       105 ~~~~fd~iv~lLGI~hLL~R~P~--~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~  179 (352)
T COG4148         105 MRAQFDQLVALLGIEHLLDRYPG--TLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLRDEIN  179 (352)
T ss_pred             chHhHHHHHHHhCcHHHHhhCCC--ccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHHHhcC
Confidence                6788889999998666543  3444  467999999999  999999999998 9999999999 899999764 7


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccc
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  178 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll  178 (247)
                      ..|+.|    +|.+.+.....+.+++.-.+.++...|...|++..|..
T Consensus       180 IPIlYV----SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~  223 (352)
T COG4148         180 IPILYV----SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFP  223 (352)
T ss_pred             CCEEEE----ecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence            778766    58888888888888877777777777777777776664

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=7.1e-22  Score=172.05  Aligned_cols=142  Identities=19%  Similarity=0.300  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++.         .+.++| ++     ..++++++.    
T Consensus        39 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  118 (258)
T PRK14268         39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR  118 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHH
Confidence            36899999999999999999999985     7999999886542         122333 11     246666654    


Q ss_pred             ------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                  +.++++.+++...  .........+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       119 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~  195 (258)
T PRK14268        119 IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE-D  195 (258)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence                        3456777777321  00111234566654  3899999999  999999999999 9999999988 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ +.+++++    +|...+...+++
T Consensus       196 ~l~~l~~-~~tiiiv----sH~~~~~~~~~d  221 (258)
T PRK14268        196 LIMNLKK-DYTIVIV----THNMQQAARISD  221 (258)
T ss_pred             HHHHHhh-CCEEEEE----ECCHHHHHHhCC
Confidence            8888854 6777655    465555555554

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.88  E-value=4.9e-22  Score=179.07  Aligned_cols=142  Identities=14%  Similarity=0.192  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC-----------CCCCC---------CcccChhhhHh-
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS-   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i~-   58 (247)
                      -+++|+|+||||||||+++|+|+++|.   +|+|.++|.+...           ..+.|         .+.+++.+++. 
T Consensus        43 e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~  122 (330)
T PRK09473         43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME  122 (330)
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHH
Confidence            478999999999999999999999996   9999999977521           12333         23345554431 


Q ss_pred             ----------------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844           59 ----------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (247)
Q Consensus        59 ----------------~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~  117 (247)
                                      +.++++.+++.+...  ..+ ...+++|++  ++||++++.  +|++||+||||+ ||+.++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~~  199 (330)
T PRK09473        123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQ  199 (330)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence                            456788888864211  111 245666654  999999999  999999999999 99999999


Q ss_pred             HHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       118 ~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++ +++++++++ |.++++|    +|.+.....+++
T Consensus       200 i~-~lL~~l~~~~g~til~i----THdl~~~~~~~D  230 (330)
T PRK09473        200 IM-TLLNELKREFNTAIIMI----THDLGVVAGICD  230 (330)
T ss_pred             HH-HHHHHHHHHcCCEEEEE----ECCHHHHHHhCC
Confidence            99 899998764 7888766    355554444444

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.88  E-value=3.8e-22  Score=166.88  Aligned_cols=116  Identities=19%  Similarity=0.257  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC----CCCCC-------CcccChhhhHhHHHHHHHcCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISLEDVMEELGLG   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~~~~l~~~~L~   69 (247)
                      -+++|+||||||||||+++|+|++  +|++|+|.++|.++..    ..+.|       .+..++++++.....+   .  
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---~--  110 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---R--  110 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---c--
Confidence            478999999999999999999999  9999999999987532    22333       2345666665432111   0  


Q ss_pred             CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                                .+++|+  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++++.+++++
T Consensus       111 ----------~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~  167 (194)
T cd03213         111 ----------GLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICS  167 (194)
T ss_pred             ----------cCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence                      244443  4899999999  999999999999 9999999988 8888887667787666

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.88  E-value=2.5e-22  Score=190.18  Aligned_cols=141  Identities=16%  Similarity=0.260  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-C---------cccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~---------~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..++| +         +.+++.+++.      
T Consensus       279 e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~  358 (501)
T PRK10762        279 EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY  358 (501)
T ss_pred             cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence            4789999999999999999999999999999999865421        22333 1         2245555331      


Q ss_pred             ----------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 ----------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 ----------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                      ++++++.+++. +.....  ...+++|++  +.||++++.  +|+++||||||+ ||+.++..+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l  434 (501)
T PRK10762        359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--IGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI  434 (501)
T ss_pred             hcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence                            45677888884 333333  345777654  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . +++++++++|.+++++    +|.+.....+++
T Consensus       435 ~-~~l~~~~~~g~tviiv----tHd~~~~~~~~d  463 (501)
T PRK10762        435 Y-QLINQFKAEGLSIILV----SSEMPEVLGMSD  463 (501)
T ss_pred             H-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence            9 8999987778887666    466655555555

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6.2e-22  Score=178.43  Aligned_cols=142  Identities=15%  Similarity=0.240  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhH-
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI-   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~----~~~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i-   57 (247)
                      -+++|+|+||||||||+++|+|+++    +++|+|.++|.++..           ..+.|         .+..++.+++ 
T Consensus        34 e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~  113 (330)
T PRK15093         34 EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLM  113 (330)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHH
Confidence            3689999999999999999999996    588999999976521           12333         1223443322 


Q ss_pred             ---------------------hHHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-cc
Q 025844           58 ---------------------SLEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE  111 (247)
Q Consensus        58 ---------------------~~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD  111 (247)
                                           .+.++++.+||.+...  ..+ ...+++|++  ++||++++.  +|++||+||||+ ||
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD  190 (330)
T PRK15093        114 QNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELTEGECQKVMIAIALAN--QPRLLIADEPTNAME  190 (330)
T ss_pred             HHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcCC
Confidence                                 2456788889975311  111 245666654  899999999  999999999999 99


Q ss_pred             HHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       112 ~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.++..++ +++++++++ |.++++|    +|.+.....+++
T Consensus       191 ~~~~~~i~-~lL~~l~~~~g~tii~i----tHdl~~v~~~~d  227 (330)
T PRK15093        191 PTTQAQIF-RLLTRLNQNNNTTILLI----SHDLQMLSQWAD  227 (330)
T ss_pred             HHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence            99999999 999998764 8888766    466665656555

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.8e-22  Score=174.97  Aligned_cols=129  Identities=13%  Similarity=0.148  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-------cccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-------~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..++| +       ...++.+++.         
T Consensus        34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~  113 (277)
T PRK13642         34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP  113 (277)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC
Confidence            3689999999999999999999999999999999976531       12333 1       1236666553         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             ++++++.+++.......  ...+++|+  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++
T Consensus       114 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~  188 (277)
T PRK13642        114 REEMIKRVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIHEIKE  188 (277)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34567777876543322  23466654  3899999999  999999999999 9999999999 88888876


Q ss_pred             C-CCeEEEE
Q 025844          129 R-NFNVCAV  136 (247)
Q Consensus       129 ~-~~~ii~v  136 (247)
                      + |.+++++
T Consensus       189 ~~g~tiil~  197 (277)
T PRK13642        189 KYQLTVLSI  197 (277)
T ss_pred             hcCCEEEEE
Confidence            4 8888666

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=4.3e-22  Score=172.85  Aligned_cols=142  Identities=18%  Similarity=0.249  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|+++|.+..         ...++| ++     ..++++++.    
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~  113 (254)
T PRK14273         34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPK  113 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHH
Confidence            36899999999999999999999987     4899999987542         122333 11     256776653    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.  .........+++|++  ++||++++.  +|+++|+||||+ ||+.++..++ 
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  190 (254)
T PRK14273        114 IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKIE-  190 (254)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-
Confidence                         2344555565311  001111234565543  899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|.......+++
T Consensus       191 ~~l~~~~~-~~tvii~----sH~~~~~~~~~d  217 (254)
T PRK14273        191 ELIINLKE-SYTIIIV----THNMQQAGRISD  217 (254)
T ss_pred             HHHHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence            88888854 6677655    355554444444

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.88  E-value=5.6e-22  Score=162.83  Aligned_cols=108  Identities=23%  Similarity=0.292  Sum_probs=84.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cccc-----ChhhhHhHHHHHHHcCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELISLEDVMEELGLG   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~~-----~v~e~i~~~~~l~~~~L~   69 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| +++.     ++++++            
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------------   96 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------   96 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------------
Confidence            3689999999999999999999999999999999875421       22333 2211     333322            


Q ss_pred             CCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                                 +++|  +++.||++++.  +|+++|+||||+ ||+.++..+. +++++++++|.+++++
T Consensus        97 -----------LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~  152 (173)
T cd03246          97 -----------LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVI  152 (173)
T ss_pred             -----------cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence                       3333  44999999999  999999999999 9999999998 8888887667787666

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.88  E-value=2e-22  Score=189.27  Aligned_cols=145  Identities=17%  Similarity=0.118  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-CCCCCCCcccChhhhHh----------------HHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEE   65 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-~~~~~y~~~~~v~e~i~----------------~~~~l~~   65 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+.. .....+.+.+++++++.                +.++++.
T Consensus        51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~  130 (549)
T PRK13545         51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF  130 (549)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999886521 11122344567777653                2356777


Q ss_pred             cCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844           66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (247)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (247)
                      +++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.+++.++ ++++++++.|.+++++    +|
T Consensus       131 lgL~~~ld~~--~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIV----SH  201 (549)
T PRK13545        131 ADIGKFIYQP--VKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFI----SH  201 (549)
T ss_pred             cCChhHhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----EC
Confidence            8886543332  245666654  899999999  999999999999 9999999998 8888887667788666    45


Q ss_pred             cccchhHHhhhhHH
Q 025844          143 FITDVTKFISGCMA  156 (247)
Q Consensus       143 ~~~d~~~~~s~~l~  156 (247)
                      .......+|+.++.
T Consensus       202 dl~~i~~l~DrIiv  215 (549)
T PRK13545        202 SLSQVKSFCTKALW  215 (549)
T ss_pred             CHHHHHHhCCEEEE
Confidence            55555555554433

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.88  E-value=6.1e-22  Score=169.13  Aligned_cols=129  Identities=18%  Similarity=0.155  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..++| ++     ..++++++.           
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~  113 (225)
T PRK10247         34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD  113 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChH
Confidence            3689999999999999999999999999999999865421       12333 11     236776653           


Q ss_pred             ---HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ---LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ---~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                         ++++++.+++.. .....  ...++.|+  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .|
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~  188 (225)
T PRK10247        114 PAIFLDDLERFALPDTILTKN--IAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVREQN  188 (225)
T ss_pred             HHHHHHHHHHcCCChHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence               456788888853 21111  23455554  3899999999  999999999999 9999999888 88888865 47


Q ss_pred             CeEEEE
Q 025844          131 FNVCAV  136 (247)
Q Consensus       131 ~~ii~v  136 (247)
                      .+++++
T Consensus       189 ~tvii~  194 (225)
T PRK10247        189 IAVLWV  194 (225)
T ss_pred             CEEEEE
Confidence            777666

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.6e-22  Score=190.37  Aligned_cols=141  Identities=14%  Similarity=0.221  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeccCCCC--------CCCCC----------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+|+|+|+++ |++|+|.++|.++..        ..++|          .+.+++.+++.     
T Consensus       289 e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~  368 (506)
T PRK13549        289 EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD  368 (506)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence            3789999999999999999999998 599999999865421        12333          12345544331     


Q ss_pred             ----------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 ----------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                      ++++++.+++.+ .....  ...+++|++  +.||++++.  +|++|||||||+ ||+.+++.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l  444 (506)
T PRK13549        369 RFTGGSRIDDAAELKTILESIQRLKVKTASPELA--IARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI  444 (506)
T ss_pred             hhccCcccChHHHHHHHHHHHHhcCccCCCcccc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence                            456778888853 33322  345776654  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . ++++.++++|.+|+++    +|.+.....+++
T Consensus       445 ~-~~l~~l~~~g~tvi~~----sHd~~~~~~~~d  473 (506)
T PRK13549        445 Y-KLINQLVQQGVAIIVI----SSELPEVLGLSD  473 (506)
T ss_pred             H-HHHHHHHHCCCEEEEE----CCCHHHHHHhCC
Confidence            8 8999987778888666    576666666665

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=170.25  Aligned_cols=142  Identities=17%  Similarity=0.197  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC---------CCCCCC-------CcccChhhhHh---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS---   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~---------~~~~~y-------~~~~~v~e~i~---   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++.         ...++|       .+..++.+++.   
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  110 (253)
T PRK14267         31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV  110 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence            37899999999999999999999987     4999999987653         122333       22356666653   


Q ss_pred             ---------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 ---------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 ---------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                     +.++++.+++.+..  ........+++|++  +.||++++.  +|+++|+|||++ ||+.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l  188 (253)
T PRK14267        111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTAKI  188 (253)
T ss_pred             HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence                           23456667764310  01112345666543  899999999  999999999999 999999998


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . ++++++.+ +.+++++    +|...+...+++
T Consensus       189 ~-~~l~~~~~-~~tiii~----sH~~~~~~~~~d  216 (253)
T PRK14267        189 E-ELLFELKK-EYTIVLV----THSPAQAARVSD  216 (253)
T ss_pred             H-HHHHHHhh-CCEEEEE----ECCHHHHHhhCC
Confidence            8 88888855 5677655    455554444444

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.88  E-value=6.2e-22  Score=169.64  Aligned_cols=128  Identities=20%  Similarity=0.204  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| ++     ..+++|++.           
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~  108 (234)
T cd03251          29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEV  108 (234)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHH
Confidence            3689999999999999999999999999999999865421       12333 11     246666663           


Q ss_pred             --------HHHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 --------~~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                              +.++++.+  ++.......  ...++.|+  ++.||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       109 ~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~  183 (234)
T cd03251         109 EEAARAANAHEFIMELPEGYDTVIGER--GVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-AALER  183 (234)
T ss_pred             HHHHHHcCcHHHHHhcccCcceeeccC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence                    12222222  232221111  23455554  3899999999  999999999999 9999999988 88888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      +.+ +.+++++
T Consensus       184 ~~~-~~tii~~  193 (234)
T cd03251         184 LMK-NRTTFVI  193 (234)
T ss_pred             hcC-CCEEEEE
Confidence            854 7777655

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.2e-22  Score=192.57  Aligned_cols=141  Identities=16%  Similarity=0.191  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..          ..++|         .+.+++.+++.     
T Consensus       351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~  430 (623)
T PRK10261        351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV  430 (623)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence            3789999999999999999999999999999999875421          12333         23346665542     


Q ss_pred             ------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 ------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 ------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                  +.++++.+|+.+ .....  ...+++|++  ++||++++.  +|++||+||||+ ||+.++..++ ++
T Consensus       431 ~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~--~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~-~l  505 (623)
T PRK10261        431 HGLLPGKAAAARVAWLLERVGLLPEHAWRY--PHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII-NL  505 (623)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence                        456788889863 22222  245777654  899999999  999999999999 9999999999 99


Q ss_pred             HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ |.++++|    +|.+.....+++
T Consensus       506 l~~l~~~~g~tvi~i----sHdl~~v~~~~d  532 (623)
T PRK10261        506 LLDLQRDFGIAYLFI----SHDMAVVERISH  532 (623)
T ss_pred             HHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            9998764 7888766    466665556555

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.88  E-value=9.3e-22  Score=170.47  Aligned_cols=142  Identities=20%  Similarity=0.266  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|++++ +|+|.++|.++..       ..++|       .+..++++++.          
T Consensus        23 ei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~  101 (248)
T PRK03695         23 EILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTE  101 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcH
Confidence            47899999999999999999999865 8999999976521       12233       22345666543          


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhc-----CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~-----~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                           +.++++.+++.+.....  ...++.|++  ++||++++.     -.+|+++|+|||++ ||+.++..+. +++++
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~  178 (248)
T PRK03695        102 AVASALNEVAEALGLDDKLGRS--VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSE  178 (248)
T ss_pred             HHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                 45678888886543322  234666543  899999984     01469999999999 9999999988 88888


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhh
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++.+++++    +|...+...+++
T Consensus       179 ~~~~~~tvi~~----sH~~~~~~~~~d  201 (248)
T PRK03695        179 LCQQGIAVVMS----SHDLNHTLRHAD  201 (248)
T ss_pred             HHhCCCEEEEE----ecCHHHHHHhCC
Confidence            87667787666    455555555555

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.88  E-value=4.6e-22  Score=167.34  Aligned_cols=122  Identities=18%  Similarity=0.212  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC------CCCCC-------CcccChhhhHhHHHHHHHc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISLEDVMEEL   66 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~~~~~l~~~   66 (247)
                      -+++|+||||||||||+++|+|+++   |++|+|.++|.++..      ..+.|       .+..++++++.....+.  
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--  111 (202)
T cd03233          34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--  111 (202)
T ss_pred             cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--
Confidence            4789999999999999999999999   899999999976532      12333       23457777765322111  


Q ss_pred             CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           67 GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        67 ~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                       .    ...  ...++.+.  ++.||++++.  +|+++|+|||++ ||+.+++.+. ++++++.++ +.+++++
T Consensus       112 -~----~~~--~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~  175 (202)
T cd03233         112 -G----NEF--VRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVS  175 (202)
T ss_pred             -c----ccc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence             1    111  23455554  3899999999  999999999999 9999999998 888888654 5555443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.2e-22  Score=172.81  Aligned_cols=142  Identities=20%  Similarity=0.287  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-------CcccChhhhHh---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS---   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~---   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++..         ..++|       .+..++++++.   
T Consensus        31 e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~  110 (258)
T PRK14241         31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL  110 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence            46899999999999999999999974     69999999876421         12333       22356766653   


Q ss_pred             --------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           59 --------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                                    ++++++.+++.+.  .........+++|++  +.||++++.  +|+++|+||||+ ||+.++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~  188 (258)
T PRK14241        111 KLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLAIE  188 (258)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH
Confidence                          2345666776421  011111234666543  899999999  999999999999 9999999998


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ++++++++ +.+++++    +|...+...+++
T Consensus       189 -~~l~~~~~-~~tviiv----sH~~~~~~~~~d  215 (258)
T PRK14241        189 -DLINELKQ-DYTIVIV----THNMQQAARVSD  215 (258)
T ss_pred             -HHHHHHhc-CCEEEEE----ecCHHHHHHhCC
Confidence             88888854 5676555    455555555544

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.88  E-value=1.9e-22  Score=171.33  Aligned_cols=130  Identities=21%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...       ..+.| ++     ..++.+++.          +
T Consensus        31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~  110 (220)
T cd03245          31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERI  110 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999865421       12222 11     236666653          3


Q ss_pred             HHHHHHcCCCCCCchhh---------hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGPNGGLIY---------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~~~~~~~---------~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++.+++.+......         ....+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++++
T Consensus       111 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~  187 (220)
T cd03245         111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLL  187 (220)
T ss_pred             HHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence            45666667643211110         012456554  3899999999  999999999999 9999999998 8888886


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      +. .+++++
T Consensus       188 ~~-~tii~~  195 (220)
T cd03245         188 GD-KTLIII  195 (220)
T ss_pred             CC-CEEEEE
Confidence            53 666555

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.88  E-value=2.7e-22  Score=175.76  Aligned_cols=141  Identities=16%  Similarity=0.202  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhH------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELI------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i------   57 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..++|         .+..++.+++      
T Consensus        39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~  118 (268)
T PRK10419         39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH  118 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence            4789999999999999999999999999999999875421          12222         2334555543      


Q ss_pred             -----------hHHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           58 -----------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        58 -----------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                 .++++++.+++.+ .....  ...+++|+  ++.||++++.  +|+++|+|||++ ||+.++..+. ++
T Consensus       119 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~  193 (268)
T PRK10419        119 LLSLDKAERLARASEMLRAVDLDDSVLDKR--PPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI-RL  193 (268)
T ss_pred             hccCCHHHHHHHHHHHHHHcCCChhHhhCC--CccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HH
Confidence                       1566788888863 22222  23455554  3899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ +.+++++    +|...+...+++
T Consensus       194 l~~~~~~~~~tiiiv----sH~~~~i~~~~d  220 (268)
T PRK10419        194 LKKLQQQFGTACLFI----THDLRLVERFCQ  220 (268)
T ss_pred             HHHHHHHcCcEEEEE----ECCHHHHHHhCC
Confidence            8888654 7777666    455555555555

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=8.7e-22  Score=171.67  Aligned_cols=142  Identities=18%  Similarity=0.220  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++.         .+.+.| ++     ..++++++.    
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~  119 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR  119 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHh
Confidence            4689999999999999999999986     58999999987642         112333 11     146665543    


Q ss_pred             -------------HHHHHHHcCCCCCC-c-hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~-~-~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.. . .......+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       120 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  196 (260)
T PRK10744        120 LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRIE-  196 (260)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         34566777764310 0 011123455554  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       197 ~~L~~~~~-~~tiii~----sH~~~~~~~~~d  223 (260)
T PRK10744        197 ELITELKQ-DYTVVIV----THNMQQAARCSD  223 (260)
T ss_pred             HHHHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence            88888854 6666555    455554444444

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.87  E-value=3.8e-22  Score=188.84  Aligned_cols=142  Identities=14%  Similarity=0.202  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCC--------CCCCC----------CcccChhhhH------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i------   57 (247)
                      -+++|+||||||||||+++|+|+++| ++|+|.++|.++..        ..++|          .+.+++++++      
T Consensus       287 e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~  366 (500)
T TIGR02633       287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK  366 (500)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence            47899999999999999999999995 89999999865421        12222          2223443332      


Q ss_pred             ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                     .++++++++++.. .....  ...+++|++  ++||++++.  +|++|||||||+ ||+.++..+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l  442 (500)
T TIGR02633       367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP--IGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI  442 (500)
T ss_pred             hhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence                           1456788888853 22222  245676654  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      + ++++.++++|.+++++    +|.+.....+++.
T Consensus       443 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d~  472 (500)
T TIGR02633       443 Y-KLINQLAQEGVAIIVV----SSELAEVLGLSDR  472 (500)
T ss_pred             H-HHHHHHHhCCCEEEEE----CCCHHHHHHhCCE
Confidence            8 8999987778887666    5666666666653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.87  E-value=1.4e-22  Score=174.00  Aligned_cols=130  Identities=16%  Similarity=0.132  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| ++     ..++.+++.          +
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~  108 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERV  108 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHH
Confidence            3689999999999999999999999999999999976421       12333 11     246666653          1


Q ss_pred             HHHHHHcCCCC---------CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP---------NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~---------~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .+.++..++..         ..........+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. +++++++
T Consensus       109 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  185 (237)
T cd03252         109 IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDIC  185 (237)
T ss_pred             HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence            12222222211         0000011234666543  899999999  999999999999 9999999998 8888885


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      + |.+++++
T Consensus       186 ~-~~tiii~  193 (237)
T cd03252         186 A-GRTVIII  193 (237)
T ss_pred             C-CCEEEEE
Confidence            4 7777655

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.87  E-value=8.7e-22  Score=168.20  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| ++     ..++.+++.          +
T Consensus        30 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~  109 (229)
T cd03254          30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEV  109 (229)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHH
Confidence            3689999999999999999999999999999999865421       22333 11     125555543          2


Q ss_pred             HHHHHHcCCCCCCc---------hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~~~~---------~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .+.++.+++.....         .......++.|+  ++.||++++.  +|+++|+|||++ ||+.++..++ +++++++
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  186 (229)
T cd03254         110 IEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM  186 (229)
T ss_pred             HHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence            23333333321100         000013455554  3899999999  999999999999 9999999988 8888885


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       ++.+++++
T Consensus       187 -~~~tii~~  194 (229)
T cd03254         187 -KGRTSIII  194 (229)
T ss_pred             -CCCEEEEE
Confidence             47777665

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=6.3e-22  Score=162.96  Aligned_cols=129  Identities=16%  Similarity=0.221  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---C------CCCCCCcccChhhhHh----------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---A------ENFDYPVAMDIRELIS----------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---~------~~~~y~~~~~v~e~i~----------------   58 (247)
                      .++++||+|||||||+++++|+..|+.|+|.++|..+.   .      |+-+..|.+++.||+.                
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~  112 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI  112 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence            57899999999999999999999999999999997542   1      4445567788999886                


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      +.+.+..+||........  -.++++++  +.||||++.  +|++|++|||.. ||..+++.+..-++.-++..|+.+++
T Consensus       113 a~q~l~~VgL~~~~~~~i--~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll  188 (259)
T COG4525         113 AHQMLALVGLEGAEHKYI--WQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL  188 (259)
T ss_pred             HHHHHHHhCcccccccce--EeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            678899999998764443  24677765  899999999  999999999998 99999999884555566667888876


Q ss_pred             E
Q 025844          136 V  136 (247)
Q Consensus       136 v  136 (247)
                      |
T Consensus       189 i  189 (259)
T COG4525         189 I  189 (259)
T ss_pred             E
Confidence            6

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.87  E-value=5.1e-22  Score=161.74  Aligned_cols=121  Identities=15%  Similarity=0.180  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+.....        ..+     ..-...++-+         .++
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~--------~~~-----~~~~~i~~~~---------qLS   84 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS--------PRD-----ARRAGIAMVY---------QLS   84 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC--------HHH-----HHhcCeEEEE---------ecC
Confidence            478999999999999999999999999999999987653210        000     0000111100         034


Q ss_pred             hh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844           83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus        83 ~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+  +++.+|++++.  +|+++|+|||++ ||+.+++.+. ++++++++++.+++++    +|...+...+++
T Consensus        85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----sh~~~~~~~~~d  150 (163)
T cd03216          85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFI----SHRLDEVFEIAD  150 (163)
T ss_pred             HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHhCC
Confidence            43  34899999999  999999999999 9999999998 8898887667777665    355444444443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.7e-21  Score=184.47  Aligned_cols=145  Identities=16%  Similarity=0.150  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|  ++|+|.++|.+...        ..++|       .+.+++.+++.       
T Consensus        28 e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  107 (500)
T TIGR02633        28 ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITL  107 (500)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccc
Confidence            47899999999999999999999987  79999999865421        22333       12345544432       


Q ss_pred             -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                   ++++++.+++....... ....+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~  183 (500)
T TIGR02633       108 PGGRMAYNAMYLRAKNLLRELQLDADNVTR-PVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DI  183 (500)
T ss_pred             cccccCHHHHHHHHHHHHHHcCCCCCcccC-chhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence                         45677888886532111 1345777654  899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhhhhH
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM  155 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (247)
                      ++++++.|.+++++    +|.......+++.++
T Consensus       184 l~~l~~~g~tviii----tHd~~~~~~~~d~i~  212 (500)
T TIGR02633       184 IRDLKAHGVACVYI----SHKLNEVKAVCDTIC  212 (500)
T ss_pred             HHHHHhCCCEEEEE----eCcHHHHHHhCCEEE
Confidence            99987778887666    355444445555433

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.87  E-value=1.1e-21  Score=158.44  Aligned_cols=129  Identities=19%  Similarity=0.224  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCC-------CCcccChhhhHh-------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD-------YPVAMDIRELIS-------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~-------y~~~~~v~e~i~-------   58 (247)
                      .++|+||+|||||||+-.++|+-.|++|+|++.|.+...           .+++       ..|+++-.||+.       
T Consensus        38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g  117 (228)
T COG4181          38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG  117 (228)
T ss_pred             eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence            589999999999999999999999999999999976532           2333       345777777774       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhh--hHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~--~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ..++++.+||+....-.+.  .+++  +++++||||++.  .|++|+.||||- ||-.+-.++. +++-.+
T Consensus       118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~--qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DLlF~l  192 (228)
T COG4181         118 ESSADSRAGAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DLLFAL  192 (228)
T ss_pred             CccccHHHHHHHHHHHhCcccccccCcc--ccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HHHHHH
Confidence                     6789999999875433322  3443  456999999999  999999999997 9999999999 888787


Q ss_pred             Hh-CCCeEEEEE
Q 025844          127 KS-RNFNVCAVY  137 (247)
Q Consensus       127 ~~-~~~~ii~v~  137 (247)
                      ++ .|.|.++|.
T Consensus       193 nre~G~TlVlVT  204 (228)
T COG4181         193 NRERGTTLVLVT  204 (228)
T ss_pred             hhhcCceEEEEe
Confidence            65 588887774

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.87  E-value=9.6e-22  Score=164.10  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCC---CCCCCC-------CcccChhhhHhHHHHHHHcCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELISLEDVMEELGLGP   70 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~---~~~~~y-------~~~~~v~e~i~~~~~l~~~~L~~   70 (247)
                      -+++|+||||||||||+++|+|+.  +|++|+|.++|.++.   ...+.|       .+..++++++.....++      
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------  107 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------  107 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence            368999999999999999999986  489999999987642   112222       33457777776432211      


Q ss_pred             CCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                               .++++  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++.+.+++++
T Consensus       108 ---------~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiiv  164 (192)
T cd03232         108 ---------GLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCT  164 (192)
T ss_pred             ---------cCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence                     24444  34899999999  999999999999 9999999998 8888887667787666

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=168.58  Aligned_cols=142  Identities=20%  Similarity=0.247  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+++|+|+++   |++|+|.++|.+...       ..+.| ++     ..++++++.        
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~  108 (246)
T PRK14269         29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM  108 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc
Confidence            4689999999999999999999974   689999999976531       12333 11     136666652        


Q ss_pred             ----------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                +.++++.+++.+...  .......+++|++  +++|++++.  +|+++|+|||++ ||+.++..+. +++
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~~l  185 (246)
T PRK14269        109 IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-ELL  185 (246)
T ss_pred             ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence                      345677888853110  0011234555543  899999999  999999999999 9999999888 888


Q ss_pred             HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++.+ +.+++++    +|...+...+++
T Consensus       186 ~~~~~-~~tiii~----tH~~~~~~~~~d  209 (246)
T PRK14269        186 KELSH-NLSMIMV----THNMQQGKRVAD  209 (246)
T ss_pred             HHHhC-CCEEEEE----ecCHHHHHhhCc
Confidence            88754 7777655    355554445444

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.87  E-value=4.6e-22  Score=172.31  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC------C--CCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~------~--~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+  ++|++|+|+++|.+...      .  .+.|       .+..++.+++.       
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~  113 (252)
T CHL00131         34 EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR  113 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence            47899999999999999999998  57999999999865421      1  1112       11223333321       


Q ss_pred             ----------------HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 ----------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                      +.++++.+++.+ ...... .+.+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  190 (252)
T CHL00131        114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-NEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKII  190 (252)
T ss_pred             cccccccccHHHHHHHHHHHHHHcCCchhhhcccc-ccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHH
Confidence                            345677788863 222211 11256554  3899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025844          119 LRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (247)
                      . ++++++.++|.+++++
T Consensus       191 ~-~~l~~~~~~g~tii~~  207 (252)
T CHL00131        191 A-EGINKLMTSENSIILI  207 (252)
T ss_pred             H-HHHHHHHhCCCEEEEE
Confidence            8 8888887667787666

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.87  E-value=1.1e-21  Score=168.63  Aligned_cols=128  Identities=17%  Similarity=0.179  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| ++     ..++++++.          +
T Consensus        30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~  109 (238)
T cd03249          30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV  109 (238)
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHH
Confidence            4789999999999999999999999999999999966421       22333 11     236666653          1


Q ss_pred             HHHHHHcCC-----------CCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           60 EDVMEELGL-----------GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        60 ~~~l~~~~L-----------~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                      .+.++..++           .......  ...+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. ++++.
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~  184 (238)
T cd03249         110 EEAAKKANIHDFIMSLPDGYDTLVGER--GSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDR  184 (238)
T ss_pred             HHHHHHcChHHHHHhhccccceeeccC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence            122222222           1111111  134555543  899999999  999999999999 9999999988 88888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      ++ +|.+++++
T Consensus       185 ~~-~g~~vi~~  194 (238)
T cd03249         185 AM-KGRTTIVI  194 (238)
T ss_pred             hc-CCCEEEEE
Confidence            86 67777655

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.87  E-value=4.3e-22  Score=164.39  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+     +.| ++...                            +
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~----------------------------L   72 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID----------------------------L   72 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC----------------------------C
Confidence            4789999999999999999999999999999998854     223 11110                            3


Q ss_pred             hhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC-CeEEEEEecccccccchhHHhh
Q 025844           82 EDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus        82 ~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~-~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.+  +++.+|++++.  +|+++++|||++ ||+.++..+. ++++++++++ .+++++    +|.......+++
T Consensus        73 SgGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sH~~~~~~~~~d  140 (177)
T cd03222          73 SGGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVV----EHDLAVLDYLSD  140 (177)
T ss_pred             CHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEE----ECCHHHHHHhCC
Confidence            333  44999999999  999999999999 9999999988 8888876654 777655    355544444433

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=171.44  Aligned_cols=142  Identities=20%  Similarity=0.275  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|+++|.++..         ..++| ++     ..++.+++.    
T Consensus        46 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  125 (267)
T PRK14235         46 TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR  125 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHH
Confidence            46899999999999999999999975     89999999976421         12333 11     126666553    


Q ss_pred             --------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                                    +.++++.+++....  ........+++|+  ++.||++++.  +|+++|+|||++ ||+.++..+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~  203 (267)
T PRK14235        126 IHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAKVE  203 (267)
T ss_pred             hcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH
Confidence                          24466677774310  0111123455554  3899999999  999999999999 9999999998


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ++++++++ +.+++++    +|.......+++
T Consensus       204 -~~L~~l~~-~~tiiiv----tH~~~~~~~~~d  230 (267)
T PRK14235        204 -ELIDELRQ-NYTIVIV----THSMQQAARVSQ  230 (267)
T ss_pred             -HHHHHHhc-CCeEEEE----EcCHHHHHhhCC
Confidence             88888855 6677555    355544444444

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=168.72  Aligned_cols=142  Identities=18%  Similarity=0.256  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC---CcC--CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~---l~~--~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+   ++|  ++|+|.++|.+...         ..++| ++     ..++.+++.    
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~  109 (250)
T PRK14245         30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHH
Confidence            46899999999999999999997   454  58999999976421         12333 11     135655553    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   ++++++.+++.+..  ........+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  186 (250)
T PRK14245        110 VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKVE-  186 (250)
T ss_pred             HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         34566777775311  11111245666643  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ ++.+++++    +|...+...+++
T Consensus       187 ~~l~~~~-~~~tiiiv----tH~~~~~~~~~d  213 (250)
T PRK14245        187 ELIHELK-KDYTIVIV----THNMQQAARVSD  213 (250)
T ss_pred             HHHHHHh-cCCeEEEE----eCCHHHHHhhCC
Confidence            8888885 46777655    455554444444

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.87  E-value=3.4e-22  Score=190.09  Aligned_cols=143  Identities=14%  Similarity=0.113  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-ccC---CC----------CCCCCC-------CcccChhhhHh---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDY-------PVAMDIRELIS---   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~-g~d---~~----------~~~~~y-------~~~~~v~e~i~---   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+. |.+   +.          ...++|       .+.+++.+++.   
T Consensus       311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~  390 (520)
T TIGR03269       311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI  390 (520)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence            3689999999999999999999999999999995 521   10          112333       23457776663   


Q ss_pred             ------------HHHHHHHcCCCCCC---chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~---~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                  +.++++.+++....   ........+++|++  ++||++++.  +|++||+||||+ ||+.+++.++ 
T Consensus       391 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~-  467 (520)
T TIGR03269       391 GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT-  467 (520)
T ss_pred             HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                        34577888886420   11122356777654  899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ .|.+++++    +|.......+++
T Consensus       468 ~~l~~l~~~~g~tvi~v----sHd~~~~~~~~d  496 (520)
T TIGR03269       468 HSILKAREEMEQTFIIV----SHDMDFVLDVCD  496 (520)
T ss_pred             HHHHHHHHHcCcEEEEE----eCCHHHHHHhCC
Confidence            88888865 47888666    466655555555

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.87  E-value=8.9e-22  Score=171.44  Aligned_cols=140  Identities=18%  Similarity=0.246  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeccCCCC-------C--CCCC-Cc-----ccC----h
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-PV-----AMD----I   53 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~g~d~~~-------~--~~~y-~~-----~~~----v   53 (247)
                      +++|+||||||||||+++|+|+++|++|+|+           ++|.+...       .  .+.| ++     ..+    +
T Consensus        28 ~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i  107 (255)
T cd03236          28 VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKV  107 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHH
Confidence            6899999999999999999999999999996           56655421       0  1111 11     011    2


Q ss_pred             hhhH-------hHHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           54 RELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        54 ~e~i-------~~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                      .+++       .+.++++.+++.+.....  ...++.++  ++.+|++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~-~~l  182 (255)
T cd03236         108 GELLKKKDERGKLDELVDQLELRHVLDRN--IDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAA-RLI  182 (255)
T ss_pred             HHHhchhHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence            2221       267889999987643322  23455554  3899999999  999999999999 9999999998 889


Q ss_pred             HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++.+++++    +|.......+++
T Consensus       183 ~~l~~~~~tIIii----SHd~~~~~~~ad  207 (255)
T cd03236         183 RELAEDDNYVLVV----EHDLAVLDYLSD  207 (255)
T ss_pred             HHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence            9987667777666    355444444444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.87  E-value=1.8e-21  Score=166.95  Aligned_cols=130  Identities=16%  Similarity=0.168  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| +     ...++++++.          +
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~  107 (236)
T cd03253          28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEV  107 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHH
Confidence            3689999999999999999999999999999999865421       11222 1     1246666653          1


Q ss_pred             HHHHHHcCCCCC------C---chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGPN------G---GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~~------~---~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .+.++..++...      +   ........++.|+  +++||++++.  +|+++|+|||++ ||+.++..+. +++.+++
T Consensus       108 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  184 (236)
T cd03253         108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVS  184 (236)
T ss_pred             HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence            222233232110      0   0000112455554  3899999999  999999999999 9999999988 8888886


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      + |.+++++
T Consensus       185 ~-~~tiii~  192 (236)
T cd03253         185 K-GRTTIVI  192 (236)
T ss_pred             C-CCEEEEE
Confidence            6 7777665

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=6.9e-22  Score=171.41  Aligned_cols=142  Identities=18%  Similarity=0.282  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeccCCCC---------CCCCC-------CcccChhhhHh---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS---   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~---   58 (247)
                      -+++|+||||||||||+++|+|+++  |   ++|+|.++|.++..         ..+.|       .+..++++++.   
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  110 (252)
T PRK14256         31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGY  110 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHH
Confidence            3689999999999999999999986  3   68999999976521         11222       22356666553   


Q ss_pred             --------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                                    +.+.++.+++....  ........+++|+  +++||++++.  +|+++|+|||++ ||+.++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~  188 (252)
T PRK14256        111 KLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLKIE  188 (252)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence                          34455667764310  0001123455554  3899999999  999999999999 9999999998


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ++++++++ +.+++++    +|...+...+++
T Consensus       189 -~~l~~~~~-~~tiiiv----sH~~~~~~~~~d  215 (252)
T PRK14256        189 -ELIEELKE-KYTIIIV----THNMQQAARVSD  215 (252)
T ss_pred             -HHHHHHHh-CCcEEEE----ECCHHHHHhhCC
Confidence             88888865 5666555    465555555555

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.87  E-value=6.9e-22  Score=188.38  Aligned_cols=131  Identities=15%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC-----------CCCCC-Cc--------ccChhhhH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~-----------~~~~y-~~--------~~~v~e~i   57 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++..           ..++| +|        ..++.+++
T Consensus        36 e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~  115 (529)
T PRK15134         36 ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL  115 (529)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHH
Confidence            36899999999999999999999986     79999999876421           12343 22        12333332


Q ss_pred             -----------------hHHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844           58 -----------------SLEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (247)
Q Consensus        58 -----------------~~~~~l~~~~L~~~~-~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~  116 (247)
                                       .++++++.+++.... ........+++|++  ++||++++.  +|++||+||||+ ||+.++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~~~  193 (529)
T PRK15134        116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSVQA  193 (529)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHHHH
Confidence                             145678888886421 11112345776654  999999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHhC-CCeEEEE
Q 025844          117 PVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus       117 ~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      .+. +++++++++ |.++++|
T Consensus       194 ~l~-~~l~~l~~~~g~tvi~v  213 (529)
T PRK15134        194 QIL-QLLRELQQELNMGLLFI  213 (529)
T ss_pred             HHH-HHHHHHHHhcCCeEEEE
Confidence            999 899998764 7887766

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.87  E-value=3e-21  Score=163.73  Aligned_cols=139  Identities=10%  Similarity=-0.085  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-EeccCCCC-CCCCCCcccChhhhHhH------------H-HHHHHcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPAA-ENFDYPVAMDIRELISL------------E-DVMEELG   67 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-i~g~d~~~-~~~~y~~~~~v~e~i~~------------~-~~l~~~~   67 (247)
                      -+++|+||||||||||+++|+|+++|++|+|. +.|..... +...+++.+++++++..            . .+.+..+
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~   93 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQ   93 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999997 66643211 12223566788887752            1 1223344


Q ss_pred             CCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH-HHHHhCCCeEEEEEeccccc
Q 025844           68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQF  143 (247)
Q Consensus        68 L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll-~~l~~~~~~ii~v~l~d~~~  143 (247)
                      +.......  ...++.+++  +++|++++.  +|+++|+|||++ +|+.++..+. +.+ +.++  +.+++++    +|.
T Consensus        94 l~~~~~~~--~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~--~~~ii~v----sH~  162 (213)
T PRK15177         94 LEQCYTDR--VSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQ--QKGLIVL----THN  162 (213)
T ss_pred             hhHHhhch--HhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhh--CCcEEEE----ECC
Confidence            54322222  345565543  889999999  999999999988 9999998888 544 4443  3455444    466


Q ss_pred             ccchhHHhh
Q 025844          144 ITDVTKFIS  152 (247)
Q Consensus       144 ~~d~~~~~s  152 (247)
                      +.....+++
T Consensus       163 ~~~~~~~~d  171 (213)
T PRK15177        163 PRLIKEHCH  171 (213)
T ss_pred             HHHHHHhcC
Confidence            655555554

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.87  E-value=2.9e-22  Score=211.21  Aligned_cols=147  Identities=14%  Similarity=0.098  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|+++|.++..      +.++|       .+.++++|++.           
T Consensus      1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257      1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence            4789999999999999999999999999999999987631      23444       23578888764           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.++|....+..  ...+++|++  +.+|+|++.  +|+++||||||+ ||+.+++.+. +++++++++|
T Consensus      2046 ~~~~~v~~lLe~lgL~~~~dk~--~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g 2120 (2272)
T TIGR01257      2046 EIEKVANWSIQSLGLSLYADRL--AGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREG 2120 (2272)
T ss_pred             HHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence                 34567888887654433  345676654  899999999  999999999999 9999999998 9999987778


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHHh
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMASL  158 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~  158 (247)
                      .+|+++    +|.+.+...+|+.+....
T Consensus      2121 ~TIILt----TH~mee~e~lcDrV~IL~ 2144 (2272)
T TIGR01257      2121 RAVVLT----SHSMEECEALCTRLAIMV 2144 (2272)
T ss_pred             CEEEEE----eCCHHHHHHhCCEEEEEE
Confidence            887655    588888888887665543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=189.18  Aligned_cols=149  Identities=15%  Similarity=0.215  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---------------------CCCCCCC---------CcccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDY---------PVAMD   52 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---------------------~~~~~~y---------~~~~~   52 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+.                     ....++|         .+.++
T Consensus        43 e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t  122 (623)
T PRK10261         43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT  122 (623)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence            46899999999999999999999999999999876421                     0112333         23457


Q ss_pred             hhhhHh-----------------HHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-cc
Q 025844           53 IRELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE  111 (247)
Q Consensus        53 v~e~i~-----------------~~~~l~~~~L~~~~-~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD  111 (247)
                      +.+++.                 +.++++.+|+.+.. ........+++|++  ++||++++.  +|++||+||||+ ||
T Consensus       123 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~LD  200 (623)
T PRK10261        123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTALD  200 (623)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccC
Confidence            777653                 34678888985311 11112346777654  999999999  999999999999 99


Q ss_pred             HHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhhhhHHHh
Q 025844          112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASL  158 (247)
Q Consensus       112 ~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~  158 (247)
                      +.++..+. +++++++++ |.++++|    +|.+.....+++.++...
T Consensus       201 ~~~~~~l~-~ll~~l~~~~g~tvi~i----tHdl~~~~~~adri~vl~  243 (623)
T PRK10261        201 VTIQAQIL-QLIKVLQKEMSMGVIFI----THDMGVVAEIADRVLVMY  243 (623)
T ss_pred             HHHHHHHH-HHHHHHHHhcCCEEEEE----cCCHHHHHHhCCEEEEee
Confidence            99999999 999999754 8888666    577766667766554443

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=6.1e-22  Score=168.07  Aligned_cols=144  Identities=16%  Similarity=0.157  Sum_probs=114.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh----------------HHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVMEE   65 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~----------------~~~~l~~   65 (247)
                      .++|+|+||||||||+|+|+|.++|++|+|.+.|.-.  -.-..++.|++|.+||+.                ++++.+.
T Consensus        55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieF  134 (249)
T COG1134          55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEF  134 (249)
T ss_pred             EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999998532  224456788899999985                6777778


Q ss_pred             cCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025844           66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI  144 (247)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~  144 (247)
                      -+|++.....  +..++.++...||-+++...+|++||+||-.+ -|..-++... +.++++.+++.++++|    +|.+
T Consensus       135 aELG~fi~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~V----SHd~  207 (249)
T COG1134         135 AELGDFIDQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLV----SHDL  207 (249)
T ss_pred             HHHHHHhhCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEE----ECCH
Confidence            8888876655  56688888766665555544999999999999 9999998888 7778876667777766    4666


Q ss_pred             cchhHHhhhh
Q 025844          145 TDVTKFISGC  154 (247)
Q Consensus       145 ~d~~~~~s~~  154 (247)
                      .-...+|+.+
T Consensus       208 ~~I~~~Cd~~  217 (249)
T COG1134         208 GAIKQYCDRA  217 (249)
T ss_pred             HHHHHhcCee
Confidence            6666777643

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.87  E-value=7.5e-22  Score=161.79  Aligned_cols=112  Identities=22%  Similarity=0.274  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-CcccChhhhHhHHHHHHHcCCCCCCch
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL   74 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~   74 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| +++..+.+ .++.+.+           
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-----------   96 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-----------   96 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence            4689999999999999999999999999999999876421       12222 22111111 1122211           


Q ss_pred             hhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           75 IYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        75 ~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                            ++.|  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++ +.+++++
T Consensus        97 ------LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~  151 (171)
T cd03228          97 ------LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVI  151 (171)
T ss_pred             ------hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEE
Confidence                  3333  34899999999  999999999999 9999999988 88888854 6666655

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.87  E-value=8.8e-22  Score=167.93  Aligned_cols=128  Identities=17%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| ++     ..++++++.           
T Consensus        41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~  120 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV  120 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHH
Confidence            3689999999999999999999999999999999875421       12222 11     125555443           


Q ss_pred             --------HHHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 --------~~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                              ++++++.+  |+.+.....  ...+++|+  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       121 ~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  195 (226)
T cd03248         121 KEAAQKAHAHSFISELASGYDTEVGEK--GSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-QALYD  195 (226)
T ss_pred             HHHHHHcCcHHHHHhccccccchhhcC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence                    23445555  554432222  23456554  3899999999  999999999999 9999999988 88888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      +++ +.+++++
T Consensus       196 ~~~-~~tii~~  205 (226)
T cd03248         196 WPE-RRTVLVI  205 (226)
T ss_pred             HcC-CCEEEEE
Confidence            855 5676655

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.7e-21  Score=165.43  Aligned_cols=139  Identities=19%  Similarity=0.286  Sum_probs=103.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC--------CCCC---------CcccChhh------------
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PVAMDIRE------------   55 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~--------~~~y---------~~~~~v~e------------   55 (247)
                      .+|+||||||||||+++++|.++|++|.+.+.|......        .+++         .+..+++|            
T Consensus        60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~  139 (257)
T COG1119          60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI  139 (257)
T ss_pred             EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence            479999999999999999999999999999998655331        1222         11122222            


Q ss_pred             ---------hHhHHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           56 ---------LISLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        56 ---------~i~~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                               .-.+..+++.+|+....++.++  .++.|.  ++.||||++.  +|++||||||++ ||+.++..+. +.+
T Consensus       140 y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll-~~l  214 (257)
T COG1119         140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL-NRL  214 (257)
T ss_pred             cccCCCHHHHHHHHHHHHHcchhhhccCchh--hcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHH
Confidence                     2237789999999987777654  466654  3899999999  999999999999 9999999998 777


Q ss_pred             HHHHhC--CCeEEEEEecccccccchhHHhh
Q 025844          124 DHLKSR--NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       124 ~~l~~~--~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++...  +.++++|    +|+..|....++
T Consensus       215 ~~~~~~~~~~~ll~V----tHh~eEi~~~~t  241 (257)
T COG1119         215 EELAASPGAPALLFV----THHAEEIPPCFT  241 (257)
T ss_pred             HHHhcCCCCceEEEE----Ecchhhcccccc
Confidence            777643  5667666    466665544433

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.86  E-value=1.6e-21  Score=185.92  Aligned_cols=140  Identities=18%  Similarity=0.231  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----------CCCCCC-C--------cccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-P--------VAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----------~~~~~y-~--------~~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+|+|+|+++ ++|+|+++|.++.          ...++| +        +..++.+++.     
T Consensus       313 e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~  391 (529)
T PRK15134        313 ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV  391 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence            3689999999999999999999985 8999999986542          122343 1        2346666542     


Q ss_pred             -------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 -------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                   +.++++.+++.+ .....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.+++.++ +
T Consensus       392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~  466 (529)
T PRK15134        392 HQPTLSAAQREQQVIAVMEEVGLDPETRHRY--PAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQIL-A  466 (529)
T ss_pred             ccccCChHHHHHHHHHHHHHcCCCHHHHhcC--CccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHH-H
Confidence                         346677888863 22222  245666654  899999999  999999999999 9999999999 8


Q ss_pred             HHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ |.+|+++    +|.+.....+++
T Consensus       467 ~l~~~~~~~~~tvi~v----sHd~~~~~~~~d  494 (529)
T PRK15134        467 LLKSLQQKHQLAYLFI----SHDLHVVRALCH  494 (529)
T ss_pred             HHHHHHHhhCCEEEEE----eCCHHHHHHhcC
Confidence            99988764 7888766    466655555555

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.6e-21  Score=166.17  Aligned_cols=142  Identities=16%  Similarity=0.267  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.+|     ++|+|.++|.++..         ..++| ++     ..++.+++.    
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~  110 (251)
T PRK14270         31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPR  110 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHH
Confidence            47899999999999999999999875     78999999876521         12333 11     246666653    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.  .........++.|++  +.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-  187 (251)
T PRK14270        111 IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKIE-  187 (251)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         2345666766321  001111234555543  899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++.+ +.+++++    +|...+...+++
T Consensus       188 ~~L~~~~~-~~tiiiv----sH~~~~~~~~~d  214 (251)
T PRK14270        188 DLMVELKK-EYTIVIV----THNMQQASRVSD  214 (251)
T ss_pred             HHHHHHHh-CCeEEEE----EcCHHHHHHhcC
Confidence            88888865 5666555    355554445444

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.4e-21  Score=167.54  Aligned_cols=142  Identities=18%  Similarity=0.232  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-C-----cccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-P-----VAMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~-----~~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+...         ..+.| +     ...++.+++.    
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  114 (261)
T PRK14263         35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR  114 (261)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHh
Confidence            47899999999999999999999986     79999999976521         12333 1     1356766664    


Q ss_pred             -----------HHHHHHHcCCCCCCch--hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGPNGGL--IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -----------~~~~l~~~~L~~~~~~--~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                 +.++++.+++.+....  ......++.|+  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~-~~  191 (261)
T PRK14263        115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE-EL  191 (261)
T ss_pred             hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                       3457777887542111  11123455554  3899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++ +.+++++    +|...+...+++
T Consensus       192 l~~~~~-~~tii~i----sH~~~~i~~~~d  216 (261)
T PRK14263        192 MVELKK-DYTIALV----THNMQQAIRVAD  216 (261)
T ss_pred             HHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence            888854 6666555    465555555555

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.5e-21  Score=171.11  Aligned_cols=142  Identities=18%  Similarity=0.251  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..++| ++     ..++++++.    
T Consensus        40 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  119 (269)
T PRK14259         40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR  119 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhh
Confidence            3689999999999999999999987     589999999876421         22333 11     126666654    


Q ss_pred             -----------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -----------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                 +.++++.+++...  .........++.|++  ++||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       120 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~  196 (269)
T PRK14259        120 INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE-ET  196 (269)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HH
Confidence                       2334566665321  001111234665543  899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++ +.+++++    +|...+...+++
T Consensus       197 l~~~~~-~~tiiiv----tH~~~~~~~~~d  221 (269)
T PRK14259        197 MHELKK-NFTIVIV----THNMQQAVRVSD  221 (269)
T ss_pred             HHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence            888854 6676555    455555555554

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.5e-21  Score=168.54  Aligned_cols=142  Identities=18%  Similarity=0.270  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.++..         ..++| ++     ..++.+++.    
T Consensus        48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  127 (268)
T PRK14248         48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALK  127 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence            3689999999999999999999864     689999999876421         12333 11     126666553    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.+.++.+++...  .........+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  204 (268)
T PRK14248        128 YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKIE-  204 (268)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHHH-
Confidence                         2334555555321  001111234666543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       205 ~~l~~~~~-~~tiii~----tH~~~~~~~~~d  231 (268)
T PRK14248        205 ELITELKE-EYSIIIV----THNMQQALRVSD  231 (268)
T ss_pred             HHHHHHhc-CCEEEEE----EeCHHHHHHhCC
Confidence            88888855 5666555    355544444444

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.9e-21  Score=169.08  Aligned_cols=142  Identities=23%  Similarity=0.296  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.+..         .+.+.| ++     ..++++++.    
T Consensus        47 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~  126 (267)
T PRK14237         47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALE  126 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHH
Confidence            3689999999999999999999986     57999999987652         122333 11     136666664    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.  .........+++|++  ++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       127 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  203 (267)
T PRK14237        127 RAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQLE-  203 (267)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         2334556666421  000111234555543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       204 ~~l~~~~~-~~tiii~----tH~~~~~~~~~d  230 (267)
T PRK14237        204 ETMFELKK-NYTIIIV----THNMQQAARASD  230 (267)
T ss_pred             HHHHHHhc-CCEEEEE----ecCHHHHHHhcC
Confidence            88888854 6666555    355554445555

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4e-21  Score=167.31  Aligned_cols=142  Identities=18%  Similarity=0.273  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++  |   ++|+|.++|.++.         ...++| ++     ..++++++.    
T Consensus        39 e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  118 (259)
T PRK14274         39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPR  118 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHH
Confidence            3689999999999999999999987  3   5899999987642         122333 11     126666553    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   ++++++.+++.+.  .........++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       119 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  195 (259)
T PRK14274        119 IHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKIE-  195 (259)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence                         2334556676431  001111234555543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       196 ~~l~~~~~-~~tiiiv----tH~~~~~~~~~d  222 (259)
T PRK14274        196 ELILKLKE-KYTIVIV----THNMQQAARVSD  222 (259)
T ss_pred             HHHHHHhc-CCEEEEE----EcCHHHHHHhCC
Confidence            88888864 6676655    355554445544

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.86  E-value=2.2e-21  Score=184.55  Aligned_cols=129  Identities=16%  Similarity=0.084  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEe-----------------------ccCC-------C---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIV-----------------------NLDP-------A---------   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~-----------------------g~d~-------~---------   41 (247)
                      -+++|+||||||||||+++|+|++  +|++|+|.+.                       |.++       .         
T Consensus        27 e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  106 (520)
T TIGR03269        27 EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR  106 (520)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence            468999999999999999999997  7999999986                       2111       0         


Q ss_pred             -CCCCCC--------CcccChhhhHh----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhh
Q 025844           42 -AENFDY--------PVAMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD   94 (247)
Q Consensus        42 -~~~~~y--------~~~~~v~e~i~----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~   94 (247)
                       ...++|        .+..++++++.                +.++++.+|+.......  ...+++|++  ++||++++
T Consensus       107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~iA~al~  184 (520)
T TIGR03269       107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLA  184 (520)
T ss_pred             hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC--cccCCHHHHHHHHHHHHHh
Confidence             011222        22346666653                45678888886543332  346777654  99999999


Q ss_pred             cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           95 NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        95 ~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                      .  +|++|||||||+ ||+.++..+. ++++++.+ .|.+|++|
T Consensus       185 ~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv  225 (520)
T TIGR03269       185 K--EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLT  225 (520)
T ss_pred             c--CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEE
Confidence            9  999999999999 9999999999 88888855 47888766

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.7e-21  Score=168.70  Aligned_cols=142  Identities=13%  Similarity=0.234  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++.         ...+.| ++     ..++++++.    
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~  110 (251)
T PRK14251         31 ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLK  110 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHH
Confidence            3689999999999999999999997     47999999997642         112333 11     246666654    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++...  .........+++|++  ++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-  187 (251)
T PRK14251        111 IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEIE-  187 (251)
T ss_pred             HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHHH-
Confidence                         2345556666311  011112345666543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       188 ~~l~~~~~-~~tiiii----sH~~~~~~~~~d  214 (251)
T PRK14251        188 ETLMELKH-QYTFIMV----THNLQQAGRISD  214 (251)
T ss_pred             HHHHHHHc-CCeEEEE----ECCHHHHHhhcC
Confidence            88888854 5677655    455554444444

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=5.1e-21  Score=165.85  Aligned_cols=142  Identities=20%  Similarity=0.293  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.+..         ...++| ++     ..++.+++.    
T Consensus        32 e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~  111 (251)
T PRK14244         32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK  111 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHH
Confidence            3689999999999999999999986     47999999986531         112333 11     125555442    


Q ss_pred             --------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                                    +.++++.+++.+..  ........++.|++  ++||++++.  +|+++|+||||+ ||+.++..+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~  189 (251)
T PRK14244        112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNVIE  189 (251)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence                          23567778875411  00111234666543  899999999  999999999999 9999999988


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ++++++++ +.+++++    +|...+...+++
T Consensus       190 -~~l~~~~~-~~tiiii----sH~~~~~~~~~d  216 (251)
T PRK14244        190 -NLIQELKK-NFTIIVV----THSMKQAKKVSD  216 (251)
T ss_pred             -HHHHHHhc-CCeEEEE----eCCHHHHHhhcC
Confidence             88888854 7777665    355554444444

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.5e-21  Score=166.14  Aligned_cols=142  Identities=17%  Similarity=0.210  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cC---CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~---~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.  +|   ++|+|.++|.++.         ...+.| ++     ..++++++.    
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  111 (252)
T PRK14239         32 EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR  111 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHH
Confidence            368999999999999999999985  46   4899999987642         112333 11     246777664    


Q ss_pred             -------------HHHHHHHcCCCCCC-c-hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~-~-~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.. . .......+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  188 (252)
T PRK14239        112 LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKIE-  188 (252)
T ss_pred             HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-
Confidence                         22345556653210 0 001123455554  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++.+ +.+++++    +|...+...+++
T Consensus       189 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d  215 (252)
T PRK14239        189 ETLLGLKD-DYTMLLV----TRSMQQASRISD  215 (252)
T ss_pred             HHHHHHhh-CCeEEEE----ECCHHHHHHhCC
Confidence            88888854 5666555    455554445444

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.7e-21  Score=184.03  Aligned_cols=141  Identities=13%  Similarity=0.181  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-C---------cccChhhh-----H--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIREL-----I--   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~---------~~~~v~e~-----i--   57 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.++..        ..++| +         ++.++.++     +  
T Consensus       275 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  354 (491)
T PRK10982        275 EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN  354 (491)
T ss_pred             cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence            4789999999999999999999999999999999866531        11333 1         22333221     1  


Q ss_pred             ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                     .++++++.+++.. .....  ...+++|++  +.||++++.  +|++|||||||+ ||+.++..+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~~  430 (491)
T PRK10982        355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ--IGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFEI  430 (491)
T ss_pred             hcccccccCcHHHHHHHHHHHHhcCccCCCcccc--cccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHHH
Confidence                           1456777788852 32222  345676654  899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      + ++++.+++.|.+++++    +|...+...+++
T Consensus       431 ~-~~l~~l~~~~~tvi~v----sHd~~~~~~~~d  459 (491)
T PRK10982        431 Y-QLIAELAKKDKGIIII----SSEMPELLGITD  459 (491)
T ss_pred             H-HHHHHHHHCCCEEEEE----CCChHHHHhhCC
Confidence            9 8899987778888666    576666666655

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.1e-21  Score=167.01  Aligned_cols=142  Identities=18%  Similarity=0.269  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~  109 (250)
T PRK14262         30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHH
Confidence            36899999999999999999999884     89999999866421         22333 11     246666654    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   ++++++.+++.+..  ........+++|+  +++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l~-  186 (250)
T PRK14262        110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRIE-  186 (250)
T ss_pred             HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-
Confidence                         23345556664310  0111123455554  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       187 ~~l~~~~~-~~tili~----sH~~~~~~~~~d  213 (250)
T PRK14262        187 KLLEELSE-NYTIVIV----THNIGQAIRIAD  213 (250)
T ss_pred             HHHHHHhc-CcEEEEE----eCCHHHHHHhCC
Confidence            88888865 6676555    355544444444

>PRK13409 putative ATPase RIL; Provisional

Probab=99.86  E-value=1.6e-21  Score=187.75  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh-----------HHHHHHHcCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS-----------LEDVMEELGLG   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~-----------~~~~l~~~~L~   69 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+. ...  ..++....+..++++++.           ++++++.+++.
T Consensus       366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~  444 (590)
T PRK13409        366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE  444 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence            3789999999999999999999999999999874 211  112222234567777664           35678888887


Q ss_pred             CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccc
Q 025844           70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT  145 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~  145 (247)
                      +.....  ...+++|+  +++||++++.  +|+++||||||+ ||+.++..+. ++++++++ .|.++++|    +|...
T Consensus       445 ~~~~~~--~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv----sHD~~  515 (590)
T PRK13409        445 RLLDKN--VKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV----DHDIY  515 (590)
T ss_pred             HHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence            543332  34577664  4999999999  999999999999 9999999998 99999865 47788666    35555


Q ss_pred             chhHHhhh
Q 025844          146 DVTKFISG  153 (247)
Q Consensus       146 d~~~~~s~  153 (247)
                      ....+++.
T Consensus       516 ~~~~~aDr  523 (590)
T PRK13409        516 MIDYISDR  523 (590)
T ss_pred             HHHHhCCE
Confidence            44555443

>PRK13409 putative ATPase RIL; Provisional

Probab=99.86  E-value=9.4e-22  Score=189.33  Aligned_cols=128  Identities=23%  Similarity=0.259  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeccCCCC---------CCCC----C---Ccc---cC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------ENFD----Y---PVA---MD   52 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~g~d~~~---------~~~~----y---~~~---~~   52 (247)
                      -+++|+||||||||||+|+|+|+++|+.|+|.           +.|.+...         ..+.    |   .+.   .+
T Consensus       100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t  179 (590)
T PRK13409        100 KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK  179 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence            47899999999999999999999999999997           77755311         1111    1   111   26


Q ss_pred             hhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        53 v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                      +++++.       ++++++.+++.......  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++
T Consensus       180 v~e~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~-~~  254 (590)
T PRK13409        180 VRELLKKVDERGKLDEVVERLGLENILDRD--ISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVA-RL  254 (590)
T ss_pred             HHHHHHhhhHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence            777653       57788999997643333  345776653  899999999  999999999999 9999999998 89


Q ss_pred             HHHHHhCCCeEEEE
Q 025844          123 VDHLKSRNFNVCAV  136 (247)
Q Consensus       123 l~~l~~~~~~ii~v  136 (247)
                      ++++++ |.+++++
T Consensus       255 i~~l~~-g~tvIiv  267 (590)
T PRK13409        255 IRELAE-GKYVLVV  267 (590)
T ss_pred             HHHHHC-CCEEEEE
Confidence            999877 8887766

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.86  E-value=1.7e-21  Score=163.63  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC--------CCCCC-CcccChhhhHhHHHHHHHcCCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPN   71 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~--------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~   71 (247)
                      -+++|+||||||||||+++|+|+  ++|++|+|.++|.++..        ..+.| ++........++++.++..     
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~-----  101 (200)
T cd03217          27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV-----  101 (200)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc-----
Confidence            36899999999999999999999  57999999999976532        12444 2222222222344443211     


Q ss_pred             CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchh
Q 025844           72 GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT  148 (247)
Q Consensus        72 ~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~  148 (247)
                            ...+++|+  ++.+|++++.  +|+++|+||||+ ||+.++..+. ++++++++.+.+++++    +|....+.
T Consensus       102 ------~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~----sh~~~~~~  168 (200)
T cd03217         102 ------NEGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLII----THYQRLLD  168 (200)
T ss_pred             ------cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHH
Confidence                  02345543  4899999999  999999999999 9999999998 8888886667777665    35544443


Q ss_pred             H
Q 025844          149 K  149 (247)
Q Consensus       149 ~  149 (247)
                      .
T Consensus       169 ~  169 (200)
T cd03217         169 Y  169 (200)
T ss_pred             H
Confidence            3

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.7e-21  Score=168.84  Aligned_cols=142  Identities=19%  Similarity=0.269  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHhH---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL---   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~~---   59 (247)
                      -+++|+|+||||||||+++|+|+++     |++|+|.++|.+..         ...++| ++     ..++.+++..   
T Consensus        51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~  130 (271)
T PRK14238         51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK  130 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHH
Confidence            4789999999999999999999997     69999999987642         112333 11     1366666641   


Q ss_pred             --------------HHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           60 --------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        60 --------------~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                    .+.++.+++...  .........+++|+  +++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       131 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-  207 (271)
T PRK14238        131 IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKVE-  207 (271)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-
Confidence                          122223322100  00011123455554  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|.......+++
T Consensus       208 ~~l~~~~~-~~tiiiv----sH~~~~i~~~~d  234 (271)
T PRK14238        208 ELVQELKK-DYSIIIV----THNMQQAARISD  234 (271)
T ss_pred             HHHHHHHc-CCEEEEE----EcCHHHHHHhCC
Confidence            88888865 6676555    455554445544

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.86  E-value=2.8e-21  Score=166.90  Aligned_cols=130  Identities=15%  Similarity=0.107  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC--------CCCCC-Ccc------cChhhhH--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVA------MDIRELI--------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~--------~~~~y-~~~------~~v~e~i--------   57 (247)
                      -+++|+||||||||||+++|+|++  +|++|+|.++|.+...        ..+.| +++      .+...+.        
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  107 (248)
T PRK09580         28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR  107 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence            468999999999999999999995  6999999999876421        12333 111      1111110        


Q ss_pred             ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                     .++++++.+++.+ ...... ...+++|+  +++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l  184 (248)
T PRK09580        108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-NVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIV  184 (248)
T ss_pred             cccccccchHHHHHHHHHHHHHHcCCChhhcccCC-CCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence                           1345566666632 111111 01355554  3899999999  999999999999 999999998


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025844          119 LRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (247)
                      . ++++++++.+.+++++
T Consensus       185 ~-~~l~~l~~~~~tiii~  201 (248)
T PRK09580        185 A-DGVNSLRDGKRSFIIV  201 (248)
T ss_pred             H-HHHHHHHhCCCEEEEE
Confidence            8 8888887667787666

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=1.8e-21  Score=162.37  Aligned_cols=157  Identities=17%  Similarity=0.214  Sum_probs=118.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CC--CCCCcccChhhhHh---------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------EN--FDYPVAMDIRELIS---------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~--~~y~~~~~v~e~i~---------   58 (247)
                      ++.|+|.||||||||+++++|.+.|++|+|.++|.|+..              |.  -+-.+.+|+.||+.         
T Consensus        34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r  113 (263)
T COG1101          34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR  113 (263)
T ss_pred             eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence            578999999999999999999999999999999988743              11  11245789999885         


Q ss_pred             -------------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                                   ..+-++.++++-...+...+..+++|++.++.-.++....|++|+|||-|+ |||.+...++ ++-.
T Consensus       114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm-~lT~  192 (263)
T COG1101         114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM-ELTA  192 (263)
T ss_pred             ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHH-HHHH
Confidence                         345555666554333333467889998855554444444999999999999 9999999999 6666


Q ss_pred             HHH-hCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhcc
Q 025844          125 HLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE  165 (247)
Q Consensus       125 ~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~  165 (247)
                      ++. +.+.|.++|    +|.+.+..+|-.+.++..++.+.++
T Consensus       193 kiV~~~klTtlMV----THnm~~Al~yG~RlImLh~G~IvlD  230 (263)
T COG1101         193 KIVEEHKLTTLMV----THNMEDALDYGNRLIMLHSGKIVLD  230 (263)
T ss_pred             HHHHhcCCceEEE----eccHHHHHhhCCeEEEEeCCeEEEE
Confidence            654 457888777    5899999999887777666655443

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=8.2e-21  Score=165.68  Aligned_cols=143  Identities=18%  Similarity=0.270  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|+     +|+|.++|.++.         .+.+.| ++     ..++.+++.    
T Consensus        34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~  113 (261)
T PRK14258         34 KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK  113 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHH
Confidence            478999999999999999999999985     799999987642         111222 11     146665553    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++....  ........++.|++  ++||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l~-  190 (261)
T PRK14258        114 IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKVE-  190 (261)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         23455667764210  01111234666543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ .+.+++++    +|...+...+++
T Consensus       191 ~~l~~l~~~~~~tiiiv----sH~~~~i~~~~d  219 (261)
T PRK14258        191 SLIQSLRLRSELTMVIV----SHNLHQVSRLSD  219 (261)
T ss_pred             HHHHHHHHhCCCEEEEE----ECCHHHHHHhcC
Confidence            88888764 47777666    466655555555

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.86  E-value=2.7e-21  Score=162.53  Aligned_cols=131  Identities=23%  Similarity=0.226  Sum_probs=87.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CCCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--   70 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~--   70 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|. -...++..+. ..++++++.         ..+.++.+++..  
T Consensus        32 ~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~  110 (204)
T cd03250          32 ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDL  110 (204)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHH
Confidence            378999999999999999999999999999999871 1001111111 345665553         223333333311  


Q ss_pred             ----CCc---hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           71 ----NGG---LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ----~~~---~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                          .+.   .......++.++  +++||++++.  +|+++|+|||++ ||+.+++.+.+.+++.+.+.+.+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~  184 (204)
T cd03250         111 EILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV  184 (204)
T ss_pred             HhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence                100   000012345543  4899999999  999999999999 999999888844667665557777766

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1e-20  Score=163.92  Aligned_cols=142  Identities=15%  Similarity=0.219  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCCC---------CCCCC-------CcccChhhhHhH--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-------PVAMDIRELISL--   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~~--   59 (247)
                      -+++|+||||||||||+++|+|+++|+     +|+|.++|.+...         ..+.|       .+..++.+++..  
T Consensus        31 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~  110 (252)
T PRK14272         31 TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL  110 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence            368999999999999999999999874     7999999876421         12333       223577776641  


Q ss_pred             ---------------HHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           60 ---------------EDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        60 ---------------~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                                     .+.++.+++...  .........+++|++  ++||++++.  +|+++|+|||++ ||+.++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~  188 (252)
T PRK14272        111 KLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTARIE  188 (252)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence                           112223333210  000111234666543  899999999  999999999999 9999999988


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ++++++++ +.+++++    +|.......+++
T Consensus       189 -~~l~~~~~-~~tiii~----sH~~~~~~~~~d  215 (252)
T PRK14272        189 -DLMTDLKK-VTTIIIV----THNMHQAARVSD  215 (252)
T ss_pred             -HHHHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence             88888864 6676555    455554445544

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.86  E-value=3.3e-21  Score=163.62  Aligned_cols=132  Identities=16%  Similarity=0.251  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-----ccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-----AMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-----~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..+.| ++     ..++++++.       
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~  107 (218)
T cd03290          28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNK  107 (218)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCH
Confidence            3689999999999999999999999999999998865321           12333 11     346777664       


Q ss_pred             --HHHHHHHcCCCCCCc---------hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH-HH
Q 025844           59 --LEDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FV  123 (247)
Q Consensus        59 --~~~~l~~~~L~~~~~---------~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~-ll  123 (247)
                        ..++++.+++.+...         .......++.|+  +++||++++.  +|+++|+||||+ ||+.++..+++. ++
T Consensus       108 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll  185 (218)
T cd03290         108 QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGIL  185 (218)
T ss_pred             HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence              234555555432100         000123455554  3999999999  999999999999 999999988832 77


Q ss_pred             HHHHhCCCeEEEE
Q 025844          124 DHLKSRNFNVCAV  136 (247)
Q Consensus       124 ~~l~~~~~~ii~v  136 (247)
                      +.+++.+.+++++
T Consensus       186 ~~~~~~~~tii~~  198 (218)
T cd03290         186 KFLQDDKRTLVLV  198 (218)
T ss_pred             HHHhcCCCEEEEE
Confidence            7776667787666

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=9e-21  Score=164.32  Aligned_cols=142  Identities=18%  Similarity=0.258  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|+     +|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  110 (251)
T PRK14249         31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR  110 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHH
Confidence            368999999999999999999999987     6999999876421         22333 11     126666553    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   ++++++.+++.+.  .........+++|+  +++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  187 (251)
T PRK14249        111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRIE-  187 (251)
T ss_pred             hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         1223344554321  00011123455554  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ ++.+++++    +|...+...+++
T Consensus       188 ~~l~~~~-~~~tiliv----sh~~~~~~~~~d  214 (251)
T PRK14249        188 ELMQELK-QNYTIAIV----THNMQQAARASD  214 (251)
T ss_pred             HHHHHHh-cCCEEEEE----eCCHHHHHhhCC
Confidence            8888885 47777665    466555555544

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.7e-21  Score=166.54  Aligned_cols=142  Identities=18%  Similarity=0.297  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|++++     ++|+|.++|.++..         ..+.| ++     ..++.+++.    
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~  109 (250)
T PRK14240         30 QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence            36899999999999999999999763     68999999876431         12333 11     246666654    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.  .........++.|+  +++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-  186 (250)
T PRK14240        110 THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKIE-  186 (250)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         2233445554310  00011123455554  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       187 ~~l~~~~~-~~tiii~----sH~~~~~~~~~d  213 (250)
T PRK14240        187 ELIQELKK-DYTIVIV----THNMQQASRISD  213 (250)
T ss_pred             HHHHHHhc-CCeEEEE----EeCHHHHHhhCC
Confidence            88888854 6777655    355544444444

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.86  E-value=5e-21  Score=201.99  Aligned_cols=144  Identities=15%  Similarity=0.198  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.++..      +.++|       .+.+|++|++.           
T Consensus       957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257       957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred             cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence            4789999999999999999999999999999999987632      22333       34568888764           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++++||.......  ...+++|++  ++||+|++.  +|+++||||||+ ||+.+++.+. +++++++ +|
T Consensus      1037 ~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~-~g 1110 (2272)
T TIGR01257      1037 EAQLEMEAMLEDTGLHHKRNEE--AQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKYR-SG 1110 (2272)
T ss_pred             HHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-CC
Confidence                 45678889997654333  346777654  899999999  999999999999 9999999999 8999885 57


Q ss_pred             CeEEEEEecccccccchhHHhhhhHH
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMA  156 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (247)
                      .+|+++    +|.+.+...+++.+..
T Consensus      1111 ~TIIlt----THdmdea~~laDrI~i 1132 (2272)
T TIGR01257      1111 RTIIMS----THHMDEADLLGDRIAI 1132 (2272)
T ss_pred             CEEEEE----ECCHHHHHHhCCEEEE
Confidence            777655    4666666665554433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=9.8e-21  Score=154.84  Aligned_cols=125  Identities=14%  Similarity=0.081  Sum_probs=99.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC------CC-------CCCcccChhhhHh------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE------NF-------DYPVAMDIRELIS------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~------~~-------~y~~~~~v~e~i~------------   58 (247)
                      ++.|.||||||||||+|+++|+++|++|+|++.|..+..+      .+       +..+.+|+.||+.            
T Consensus        30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~  109 (209)
T COG4133          30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA  109 (209)
T ss_pred             EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchh
Confidence            5679999999999999999999999999999998765432      11       2245778888875            


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (247)
                       +.+.++.+||........  .+++.|++  ++|||-++.  .+++.|||||++ ||......+- .++..-..+|.-|
T Consensus       110 ~i~~Al~~vgL~g~~dlp~--~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiV  183 (209)
T COG4133         110 TIWEALAQVGLAGLEDLPV--GQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIV  183 (209)
T ss_pred             hHHHHHHHcCcccccccch--hhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEE
Confidence             678999999988766664  35666654  999999988  999999999998 9999987776 7766655554434

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.85  E-value=2.4e-21  Score=159.68  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=84.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-Ccc-----cChhhhHhHHHHHHHcCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVA-----MDIRELISLEDVMEELGLGP   70 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~~-----~~v~e~i~~~~~l~~~~L~~   70 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.++..      ..+.| +++     .++++++             
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i-------------   95 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL-------------   95 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh-------------
Confidence            4689999999999999999999999999999999875421      22333 221     2344433             


Q ss_pred             CCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                             ...++.+  +++.||++++.  +|+++|+|||++ ||+.++..++ +++++++ ++.+++++
T Consensus        96 -------~~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~  153 (178)
T cd03247          96 -------GRRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWI  153 (178)
T ss_pred             -------cccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence                   1234444  34899999999  999999999999 9999999988 8888885 46777665

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=165.60  Aligned_cols=142  Identities=16%  Similarity=0.233  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|++++     ++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        52 e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  131 (272)
T PRK14236         52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLR  131 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence            47899999999999999999999874     89999999876531         12333 11     126666653    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.  .........+++|+  +++||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-  208 (272)
T PRK14236        132 LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKIE-  208 (272)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         2334555666431  00001123455554  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       209 ~~L~~~~~-~~tiiiv----tH~~~~~~~~~d  235 (272)
T PRK14236        209 ELITELKS-KYTIVIV----THNMQQAARVSD  235 (272)
T ss_pred             HHHHHHHh-CCeEEEE----eCCHHHHHhhCC
Confidence            88888865 5666555    355544444444

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.8e-21  Score=168.01  Aligned_cols=142  Identities=15%  Similarity=0.262  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..+.| ++     ..++.+++.    
T Consensus        66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  145 (285)
T PRK14254         66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK  145 (285)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHH
Confidence            4789999999999999999999987     689999999866421         12233 11     126666653    


Q ss_pred             -----------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -----------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -----------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                 ++++++.+++.+..  ........+++|+  +++||++++.  +|++||||||++ ||+.++..+. ++
T Consensus       146 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~-~~  222 (285)
T PRK14254        146 IQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE-DL  222 (285)
T ss_pred             HcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence                       34566677774321  0111123466654  3899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++ +.+++++    +|.......+++
T Consensus       223 L~~~~~-~~tiii~----tH~~~~i~~~~d  247 (285)
T PRK14254        223 IEELAE-EYTVVIV----THNMQQAARISD  247 (285)
T ss_pred             HHHHhc-CCEEEEE----eCCHHHHHhhcC
Confidence            888865 3566555    455554444444

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.5e-21  Score=171.21  Aligned_cols=142  Identities=17%  Similarity=0.275  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.++.         ...++| ++     ..++.|++.    
T Consensus        66 e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  145 (286)
T PRK14275         66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPR  145 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHH
Confidence            4789999999999999999999864     49999999986542         112333 11     126666653    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++...  .........+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       146 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l~-  222 (286)
T PRK14275        146 LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKIE-  222 (286)
T ss_pred             hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         2244555665310  001111245666543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|.......+++
T Consensus       223 ~~L~~~~~-~~tvIiv----sH~~~~~~~~~d  249 (286)
T PRK14275        223 DLIQELRG-SYTIMIV----THNMQQASRVSD  249 (286)
T ss_pred             HHHHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence            88888854 5666555    455554445444

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.7e-21  Score=166.44  Aligned_cols=142  Identities=18%  Similarity=0.247  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC--------CCCCC-Cc-----ccChhhhHhH----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELISL----   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~--------~~~~y-~~-----~~~v~e~i~~----   59 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++..        ..+.| ++     ..++.+++..    
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~  109 (249)
T PRK14253         30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA  109 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHh
Confidence            37899999999999999999999986     58999999865421        12333 11     2466665541    


Q ss_pred             -------------HHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           60 -------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        60 -------------~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                   .+.++.+++.+..  ........+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~  186 (249)
T PRK14253        110 QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE-E  186 (249)
T ss_pred             cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence                         2234445553210  0011123455554  3899999999  999999999999 9999999988 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ +.+++++    +|...+...+++
T Consensus       187 ~l~~~~~-~~tii~~----sh~~~~~~~~~d  212 (249)
T PRK14253        187 LMEELKK-NYTIVIV----THSMQQARRISD  212 (249)
T ss_pred             HHHHHhc-CCeEEEE----ecCHHHHHHhCC
Confidence            8998865 5677655    455555555555

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=162.83  Aligned_cols=142  Identities=21%  Similarity=0.262  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec------cCCC-------CCCCCC-------CcccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g------~d~~-------~~~~~y-------~~~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|      .+..       ...+.|       .+..++.+++.    
T Consensus        37 e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~  116 (257)
T PRK14246         37 SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK  116 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHH
Confidence            37899999999999999999999999997766654      3321       112222       23456666553    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+..  ........++.|+  +.+||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l~-  193 (257)
T PRK14246        117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAIE-  193 (257)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         34556667775310  0001123455554  3899999999  999999999999 9999999888 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++.++++ +.+++++    +|.......+++
T Consensus       194 ~~l~~~~~-~~tiilv----sh~~~~~~~~~d  220 (257)
T PRK14246        194 KLITELKN-EIAIVIV----SHNPQQVARVAD  220 (257)
T ss_pred             HHHHHHhc-CcEEEEE----ECCHHHHHHhCC
Confidence            88888854 5677655    455554444444

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.85  E-value=3.2e-21  Score=162.45  Aligned_cols=124  Identities=21%  Similarity=0.232  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-------CCCCCC-Cc-----ccChhhhHh------HHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS------LEDVM   63 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-------~~~~~y-~~-----~~~v~e~i~------~~~~l   63 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..       ...++| ++     ..++++++.      .+++.
T Consensus        35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~  114 (207)
T cd03369          35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY  114 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHH
Confidence            368999999999999999999999999999999987542       122333 11     236766663      22333


Q ss_pred             HHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.+++...      ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++. ++.+++++
T Consensus       115 ~~l~~~~~------~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~  180 (207)
T cd03369         115 GALRVSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTI  180 (207)
T ss_pred             HHhhccCC------CCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEE
Confidence            34443222      23455543  4899999999  999999999999 9999999888 8888874 47777655

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.3e-21  Score=165.75  Aligned_cols=142  Identities=20%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+|+||||||||+++|+|+++|     ++|+|.++|.+...         ..++| ++     ..++.+++.    
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  113 (259)
T PRK14260         34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVR  113 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHH
Confidence            47899999999999999999999985     48999999875421         12333 11     246666653    


Q ss_pred             -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++...  .........+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  190 (259)
T PRK14260        114 ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKVE-  190 (259)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         2345566666321  001111234565543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       191 ~~l~~~~~-~~tiii~----tH~~~~i~~~~d  217 (259)
T PRK14260        191 ELIHSLRS-ELTIAIV----THNMQQATRVSD  217 (259)
T ss_pred             HHHHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence            88888855 5677655    466665555555

>PLN03211 ABC transporter G-25; Provisional

Probab=99.85  E-value=4.2e-21  Score=186.98  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeccCCCC---CCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|.++|.  +|+|.++|.+...   +.++|       .+.+|++|++.            
T Consensus        95 e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~  174 (659)
T PLN03211         95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT  174 (659)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC
Confidence            478999999999999999999999885  8999999976421   22333       33567777763            


Q ss_pred             -------HHHHHHHcCCCCCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 -------LEDVMEELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                             ++++++.+||.+......   ....+++|+  ++.||++++.  +|+++++||||+ ||..++..++ +++++
T Consensus       175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~  251 (659)
T PLN03211        175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGS  251 (659)
T ss_pred             HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHH
Confidence                   456777888865321110   012355554  4999999999  999999999999 9999999999 89999


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      ++++|.+++++
T Consensus       252 l~~~g~TvI~~  262 (659)
T PLN03211        252 LAQKGKTIVTS  262 (659)
T ss_pred             HHhCCCEEEEE
Confidence            87778888665

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=164.60  Aligned_cols=142  Identities=19%  Similarity=0.239  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC--------CCCCCC-Cc-----ccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PV-----AMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~--------~~~~~y-~~-----~~~v~e~i~-----   58 (247)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+..        ...+.| ++     ..++++++.     
T Consensus        48 e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~  127 (276)
T PRK14271         48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA  127 (276)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHh
Confidence            46899999999999999999999985     6999999986542        112333 11     146766654     


Q ss_pred             ------------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                  +.+.++.+++.....  .......+++|++  ++||++++.  +|+++|+||||+ ||+.+++.+. +
T Consensus       128 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~-~  204 (276)
T PRK14271        128 HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE-E  204 (276)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence                        134456677753110  0111234666543  899999999  999999999999 9999999988 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++++++ +.+++++    +|...+...+++
T Consensus       205 ~L~~~~~-~~tiiiv----sH~~~~~~~~~d  230 (276)
T PRK14271        205 FIRSLAD-RLTVIIV----THNLAQAARISD  230 (276)
T ss_pred             HHHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence            8888865 4677655    355554445444

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=2.9e-21  Score=166.56  Aligned_cols=122  Identities=18%  Similarity=0.195  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhH-hHHHHHHHcCCCCCCchhhhHHhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i-~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      -+++|+|+|||||||+-|++.|+++|++|+|++.|.|...-.        ..+.. .+.++++.+|+.+.-..+++ +.+
T Consensus        40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryP-hel  110 (268)
T COG4608          40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYP-HEL  110 (268)
T ss_pred             CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCC-ccc
Confidence            468999999999999999999999999999999998853321        22222 38899999999886666665 467


Q ss_pred             hhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        82 ~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                      ++|++  +.||||++.  +|+++++|||++ ||...+.++. +++..+++ .|.+.+++
T Consensus       111 SGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFI  166 (268)
T COG4608         111 SGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFI  166 (268)
T ss_pred             CchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEE
Confidence            77654  899999999  999999999999 9999999999 99999975 48887666

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.85  E-value=4.7e-21  Score=162.82  Aligned_cols=130  Identities=22%  Similarity=0.202  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~---------~~   60 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| +     ...++++++.         +.
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~  110 (221)
T cd03244          31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW  110 (221)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHH
Confidence            3689999999999999999999999999999999865421       12222 1     1236676653         34


Q ss_pred             HHHHHcCCCCCCch---------hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGPNGGL---------IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~~~~~---------~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      +.++.+++.+....         ......++.|+  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+
T Consensus       111 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~  187 (221)
T cd03244         111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK  187 (221)
T ss_pred             HHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence            45555555321100         00123455544  3899999999  999999999999 9999999888 88888754


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                       +.+++++
T Consensus       188 -~~tii~~  194 (221)
T cd03244         188 -DCTVLTI  194 (221)
T ss_pred             -CCEEEEE
Confidence             5666555

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.8e-21  Score=167.44  Aligned_cols=142  Identities=15%  Similarity=0.223  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHhH---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL---   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~~---   59 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++.         ...++| ++     ..++.+++..   
T Consensus        37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  116 (264)
T PRK14243         37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR  116 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhh
Confidence            4789999999999999999999986     37999999987642         112333 11     1366666541   


Q ss_pred             ------------HHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           60 ------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        60 ------------~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                  .++++.+++...  .........+++|+  ++.||++++.  +|+++|+|||++ ||+.++..+. ++
T Consensus       117 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~  193 (264)
T PRK14243        117 INGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE-EL  193 (264)
T ss_pred             hcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                        223445555210  00001123455554  3899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++.+ +.+++++    +|...+...+++
T Consensus       194 L~~~~~-~~tvi~v----tH~~~~~~~~~d  218 (264)
T PRK14243        194 MHELKE-QYTIIIV----THNMQQAARVSD  218 (264)
T ss_pred             HHHHhc-CCEEEEE----ecCHHHHHHhCC
Confidence            888865 4677555    466655555555

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.2e-20  Score=161.05  Aligned_cols=142  Identities=16%  Similarity=0.238  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.++     ++|+|.++|.++..         ..++| ++     ..++++++.    
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~  112 (253)
T PRK14261         33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPR  112 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHH
Confidence            36899999999999999999999763     48999999866421         12333 11     125665553    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+.-  ........+++|++  +.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l~-  189 (253)
T PRK14261        113 IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKIE-  189 (253)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         23445555653210  01111234565543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|.......+++
T Consensus       190 ~~l~~~~~-~~tvii~----sh~~~~~~~~~d  216 (253)
T PRK14261        190 DLIEDLKK-EYTVIIV----THNMQQAARVSD  216 (253)
T ss_pred             HHHHHHhh-CceEEEE----EcCHHHHHhhCC
Confidence            88888865 5666555    455554444444

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.84  E-value=5.4e-21  Score=186.33  Aligned_cols=129  Identities=21%  Similarity=0.216  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-------HHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDVM   63 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-------~~~~l   63 (247)
                      .++|+|+||||||||+|.++|+++|.+|+|.++|.|.+.       +.++| ++     +-|++||++       .++++
T Consensus       501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~  580 (709)
T COG2274         501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII  580 (709)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence            489999999999999999999999999999999988743       44555 22     337888886       22333


Q ss_pred             H------------HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           64 E------------ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        64 ~------------~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      +            .+-+|-+...-..-..+++|++  .+|||++..  +|++|||||||+ ||+.+.+.+. +-+.++. 
T Consensus       581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~L~~~~-  656 (709)
T COG2274         581 EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QNLLQIL-  656 (709)
T ss_pred             HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HHHHHHh-
Confidence            3            2211110000000013556654  899999999  999999999999 9999998888 6666664 


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .|.|+|++
T Consensus       657 ~~~T~I~I  664 (709)
T COG2274         657 QGRTVIII  664 (709)
T ss_pred             cCCeEEEE
Confidence            35666655

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8.8e-21  Score=180.84  Aligned_cols=139  Identities=16%  Similarity=0.155  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CC--CCCCCCCcccChhhhHh---------------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELIS---------------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~--~~~~~y~~~~~v~e~i~---------------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.+.|.. .+  .+.....+..++.+++.                     
T Consensus        28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~  107 (530)
T PRK15064         28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE  107 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence            4689999999999999999999999999999987631 10  11111223334443321                     


Q ss_pred             ---------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc
Q 025844           59 ---------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        59 ---------------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~  109 (247)
                                                 +.++++.+|+...... .....+++|++  ++||++++.  +|++|||||||+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~  184 (530)
T PRK15064        108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY-GLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTN  184 (530)
T ss_pred             cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc-CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence                                       3456777888542111 12356777654  899999999  999999999999


Q ss_pred             -ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ||+.++..+. ++++   +.+.+|++|    +|.......+++
T Consensus       185 ~LD~~~~~~l~-~~l~---~~~~tiiiv----sHd~~~~~~~~d  220 (530)
T PRK15064        185 NLDINTIRWLE-DVLN---ERNSTMIII----SHDRHFLNSVCT  220 (530)
T ss_pred             ccCHHHHHHHH-HHHH---hCCCeEEEE----eCCHHHHHhhcc
Confidence             9999998877 6654   346777666    355554455554

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.84  E-value=1.1e-20  Score=154.23  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC------CcccChhhhHhHHHHHHHcCCCCCCchhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY------PVAMDIRELISLEDVMEELGLGPNGGLIY   76 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y------~~~~~v~e~i~~~~~l~~~~L~~~~~~~~   76 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.    ..+.|      ....++++++...         .      
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~~~tv~~nl~~~---------~------   88 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLPLGTLREQLIYP---------W------   88 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccccccHHHHhhcc---------C------
Confidence            368999999999999999999999999999999763    12222      1234666665321         0      


Q ss_pred             hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           77 CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        77 ~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                       ...+++++  ++.+|++++.  +|+++|+|||++ ||+.++..+. ++++++   +.+++++
T Consensus        89 -~~~LS~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiiv  144 (166)
T cd03223          89 -DDVLSGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISV  144 (166)
T ss_pred             -CCCCCHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEE
Confidence             12355544  4899999999  999999999999 9999998887 777765   4666655

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.84  E-value=2.6e-20  Score=163.91  Aligned_cols=129  Identities=20%  Similarity=0.201  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~   60 (247)
                      -+++|+||||||||||+++|+|+++ .+|+|+++|.++..       ..+.| ++     ..++++++.         +.
T Consensus        31 e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~  109 (275)
T cd03289          31 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW  109 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHH
Confidence            3689999999999999999999998 78999999976532       12333 11     226777663         45


Q ss_pred             HHHHHcCCCCCCchhhh-H--------HhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGPNGGLIYC-M--------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~~~~~~~~-~--------~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++.+|+.+....... +        ..++.|+  ++.||++++.  +|+++|+||||+ ||+.+...+. +.++++. 
T Consensus       110 ~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~l~~~~-  185 (275)
T cd03289         110 KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KTLKQAF-  185 (275)
T ss_pred             HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc-
Confidence            67777777542211100 0        0145444  3899999999  999999999999 9999998887 7777764 


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .+.+++++
T Consensus       186 ~~~tii~i  193 (275)
T cd03289         186 ADCTVILS  193 (275)
T ss_pred             CCCEEEEE
Confidence            47777666

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.9e-20  Score=161.00  Aligned_cols=142  Identities=16%  Similarity=0.264  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.++..         ..++| ++     ..++.+++.    
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~  109 (250)
T PRK14266         30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHh
Confidence            4789999999999999999999864     389999999976421         12333 11     125555543    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++...-  ........++.|++  +.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l~-  186 (250)
T PRK14266        110 IHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKIE-  186 (250)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         23345566653210  00011234555543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|...+...+++
T Consensus       187 ~~l~~~~~-~~tiii~----sh~~~~~~~~~~  213 (250)
T PRK14266        187 DLIHKLKE-DYTIVIV----THNMQQATRVSK  213 (250)
T ss_pred             HHHHHHhc-CCeEEEE----ECCHHHHHhhcC
Confidence            88888854 6677655    355554444444

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=163.13  Aligned_cols=142  Identities=18%  Similarity=0.268  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHhH---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~~---   59 (247)
                      -+++|+||||||||||+++|+|+.+  |   ++|+|.++|.++..         ..+.| ++     ..++.+++..   
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~  111 (252)
T PRK14255         32 EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLR  111 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHH
Confidence            3789999999999999999999875  4   58999999876421         12333 11     1366666541   


Q ss_pred             --------------HHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           60 --------------EDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        60 --------------~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                    .+.++.+++....  ........++.|++  +.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  188 (252)
T PRK14255        112 LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQIE-  188 (252)
T ss_pred             HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                          2234445543110  01111234555543  899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++ +.+++++    +|.......+++
T Consensus       189 ~~l~~~~~-~~tii~v----sH~~~~~~~~~d  215 (252)
T PRK14255        189 NMLLELRD-QYTIILV----THSMHQASRISD  215 (252)
T ss_pred             HHHHHHHh-CCEEEEE----ECCHHHHHHhCC
Confidence            88888865 4666655    355444444444

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=164.85  Aligned_cols=142  Identities=18%  Similarity=0.207  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHhH---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~~---   59 (247)
                      -+++|+||||||||||+++|+|++++     ++|+|.++|.+...         ..+.| ++     ..++.+++..   
T Consensus        47 e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~  126 (274)
T PRK14265         47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPR  126 (274)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHH
Confidence            36899999999999999999999863     58999999876421         12333 11     1266666532   


Q ss_pred             ------------HHHHHHcCCCCCCc--hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           60 ------------EDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        60 ------------~~~l~~~~L~~~~~--~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                  .+.++.+++.....  .......+++|+  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       127 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~  203 (274)
T PRK14265        127 ANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE-EL  203 (274)
T ss_pred             hcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence                        23455555531100  001123455554  3899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++ +.+++++    +|.......+++
T Consensus       204 L~~~~~-~~tiii~----sH~~~~~~~~~d  228 (274)
T PRK14265        204 CLELKE-QYTIIMV----THNMQQASRVAD  228 (274)
T ss_pred             HHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence            888864 5666555    466555555554

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.84  E-value=3.1e-20  Score=163.47  Aligned_cols=163  Identities=16%  Similarity=0.249  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-C----CCceEEEeccCCCC-----------CCCCC---------CcccChhhhH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~----~~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i   57 (247)
                      -+++|+|.+||||||+.+++.|+++ +    .+|+|.++|.|...           ..+++         .|-++|.+++
T Consensus        32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi  111 (316)
T COG0444          32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI  111 (316)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence            4789999999999999999999998 3    57899999986521           12222         2333444333


Q ss_pred             h------------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHh
Q 025844           58 S------------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT  114 (247)
Q Consensus        58 ~------------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~  114 (247)
                      .                  +.++++.+|+.+.  .-..|+ ..+++|++  +.||.|++.  +|++||.||||+ ||...
T Consensus       112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt~  188 (316)
T COG0444         112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVTV  188 (316)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHHH
Confidence            1                  5678888899765  223333 45777764  889999999  999999999999 99999


Q ss_pred             HHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhhcc
Q 025844          115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN  189 (247)
Q Consensus       115 ~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~  189 (247)
                      +.+++ ++++++++ .|.++++|    +|.+.-...+++               .|.|+....+++.. ..++++.
T Consensus       189 QaqIl-~Ll~~l~~e~~~aiilI----THDl~vva~~aD---------------ri~VMYaG~iVE~g-~~~~i~~  243 (316)
T COG0444         189 QAQIL-DLLKELQREKGTALILI----THDLGVVAEIAD---------------RVAVMYAGRIVEEG-PVEEIFK  243 (316)
T ss_pred             HHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhcc---------------eEEEEECcEEEEeC-CHHHHhc
Confidence            99999 99999986 58888777    466655555555               55666666666654 3444433

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.84  E-value=5.2e-20  Score=174.28  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CC--CCCCCCCCcccChhhhHh---------------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELIS---------------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~--~~~~~~y~~~~~v~e~i~---------------------   58 (247)
                      -.+||||+||||||||+|+|+|.+.|++|+|...+. ..  -.|+.+.....++.+.+.                     
T Consensus        30 ~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~  109 (530)
T COG0488          30 ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA  109 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence            368999999999999999999999999999988652 11  123333333334444332                     


Q ss_pred             -------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-c
Q 025844           59 -------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-I  110 (247)
Q Consensus        59 -------------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-L  110 (247)
                                               +..++..+|+.+. ..  .+..+++|++  ++||++|..  +|++|+|||||+ |
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~--~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHL  184 (530)
T COG0488         110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR--PVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHL  184 (530)
T ss_pred             cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC--chhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccc
Confidence                                     2344445566554 22  2467888765  999999999  999999999999 9


Q ss_pred             cHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhH
Q 025844          111 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK  149 (247)
Q Consensus       111 D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~  149 (247)
                      |..+...+- +.+...  .| ++|+|. ||-+++...+.
T Consensus       185 D~~~i~WLe-~~L~~~--~g-tviiVS-HDR~FLd~V~t  218 (530)
T COG0488         185 DLESIEWLE-DYLKRY--PG-TVIVVS-HDRYFLDNVAT  218 (530)
T ss_pred             CHHHHHHHH-HHHHhC--CC-cEEEEe-CCHHHHHHHhh
Confidence            999875544 554432  45 777774 77777654443

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=180.65  Aligned_cols=129  Identities=19%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------H
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L   59 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------~   59 (247)
                      .++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++| +|     +-|+++|+.           +
T Consensus       371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i  450 (582)
T PRK11176        371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI  450 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence            589999999999999999999999999999999987532       33444 22     347777775           3


Q ss_pred             HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      +++++..++.+      +|-..   ..-..+++|+  +.+|||++..  +|+++|+||||+ ||+.+...++ +.+.++.
T Consensus       451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~~~  527 (582)
T PRK11176        451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDELQ  527 (582)
T ss_pred             HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence            44555544321      11000   0002356654  4899999999  999999999999 9999999988 7777764


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       ++.|+++|
T Consensus       528 -~~~tvI~V  535 (582)
T PRK11176        528 -KNRTSLVI  535 (582)
T ss_pred             -CCCEEEEE
Confidence             45777666

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.83  E-value=4.7e-20  Score=177.40  Aligned_cols=130  Identities=20%  Similarity=0.250  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| +|     +-|++||+.          +
T Consensus       367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i  446 (574)
T PRK11160        367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL  446 (574)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH
Confidence            3689999999999999999999999999999999987542       22333 22     347888885          5


Q ss_pred             HHHHHHcCCCCC-----Cchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           60 EDVMEELGLGPN-----GGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        60 ~~~l~~~~L~~~-----~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      .++++..++.+.     |-...   .-..+++|+  +.+|||++..  +|+++|+||||+ ||+.+...+. +.++++. 
T Consensus       447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~-  522 (574)
T PRK11160        447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA-  522 (574)
T ss_pred             HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence            667777776532     10000   012355554  4899999999  999999999999 9999998888 7777764 


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      ++.+++++
T Consensus       523 ~~~tviii  530 (574)
T PRK11160        523 QNKTVLMI  530 (574)
T ss_pred             CCCEEEEE
Confidence            46777655

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.83  E-value=4.4e-20  Score=172.98  Aligned_cols=163  Identities=20%  Similarity=0.263  Sum_probs=124.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC----CceEEEeccCCCC-----------CCCCC---------CcccChhhhHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~----~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i~   58 (247)
                      -++||+|.+||||||+.+++.|++++.    +|+|.++|.|...           ..++|         .|-++|.+.+.
T Consensus        36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~  115 (539)
T COG1123          36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR  115 (539)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence            478999999999999999999999987    7999999976421           22222         34456666654


Q ss_pred             -----------------HHHHHHHcCCCCCCch-hhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844           59 -----------------LEDVMEELGLGPNGGL-IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (247)
Q Consensus        59 -----------------~~~~l~~~~L~~~~~~-~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~  117 (247)
                                       +.++++++|+.+.... .|+ +.+++|++  +.||+|++.  +|++||+||||. ||+..+.+
T Consensus       116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~q  192 (539)
T COG1123         116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQAQ  192 (539)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHH
Confidence                             6789999999876554 344 56787764  899999999  999999999999 99999999


Q ss_pred             HHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhhcc
Q 025844          118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN  189 (247)
Q Consensus       118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~  189 (247)
                      ++ ++++.+.+ .|+++++|    +|.+.-.+.+++               .+.|+-+..+++.. .-++++.
T Consensus       193 IL-~llk~l~~e~g~a~l~I----THDl~Vva~~aD---------------rv~Vm~~G~iVE~G-~~~~i~~  244 (539)
T COG1123         193 IL-DLLKDLQRELGMAVLFI----THDLGVVAELAD---------------RVVVMYKGEIVETG-PTEEILS  244 (539)
T ss_pred             HH-HHHHHHHHHcCcEEEEE----cCCHHHHHHhcC---------------eEEEEECCEEEEec-CHHHHHh
Confidence            99 99999975 58888776    466665556555               55677777777654 3333333

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.83  E-value=1.6e-20  Score=154.63  Aligned_cols=160  Identities=16%  Similarity=0.307  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec-cCCCC---------------CCCCCCcccChhhhHh---------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA---------------ENFDYPVAMDIRELIS---------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g-~d~~~---------------~~~~y~~~~~v~e~i~---------   58 (247)
                      .-+|||||||||||++.+|+|-.+|+.|+|++.| .|...               |....+.+++|+||+.         
T Consensus        33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v  112 (249)
T COG4674          33 LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV  112 (249)
T ss_pred             EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence            3579999999999999999999999999999999 55432               2222345778888875         


Q ss_pred             ---------------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                     ++++++..||++......  ..++.++..|+...+....+|++|++|||.+ +--....... ++
T Consensus       113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~A--~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eL  189 (249)
T COG4674         113 FASLFARLRAEERRRIDELLATIGLGDERDRLA--ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-EL  189 (249)
T ss_pred             HHHhhhhcChhHHHHHHHHHHHcccchhhhhhh--hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HH
Confidence                           789999999999877664  4577777777655444333999999999998 7666667777 89


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDY  187 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~  187 (247)
                      ++.+++ +.+|++| -+|..++.....                  ++.|+...-.+... +++..
T Consensus       190 l~~la~-~hsilVV-EHDM~Fvr~~A~------------------~VTVlh~G~VL~EG-sld~v  233 (249)
T COG4674         190 LKSLAG-KHSILVV-EHDMGFVREIAD------------------KVTVLHEGSVLAEG-SLDEV  233 (249)
T ss_pred             HHHHhc-CceEEEE-eccHHHHHHhhh------------------eeEEEeccceeecc-cHHHh
Confidence            999964 4667666 366666543332                  66788777776655 55443

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.83  E-value=5.9e-20  Score=159.95  Aligned_cols=128  Identities=18%  Similarity=0.133  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~   60 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| ++     ..++++++.         +.
T Consensus        48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~  127 (257)
T cd03288          48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW  127 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHH
Confidence            3689999999999999999999999999999999876421       12222 11     124444432         22


Q ss_pred             HHHHHcCCC-----------CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           61 DVMEELGLG-----------PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        61 ~~l~~~~L~-----------~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      +.++..++.           +.....  ...++.++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++.+
T Consensus       128 ~~l~~~~l~~~~~~~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~  202 (257)
T cd03288         128 EALEIAQLKNMVKSLPGGLDAVVTEG--GENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTA  202 (257)
T ss_pred             HHHHHhCcHHHHhhcccccCcEeccC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh
Confidence            333333332           111110  12355543  3899999999  999999999999 9999988887 878777


Q ss_pred             HhCCCeEEEE
Q 025844          127 KSRNFNVCAV  136 (247)
Q Consensus       127 ~~~~~~ii~v  136 (247)
                      . ++.+++++
T Consensus       203 ~-~~~tiii~  211 (257)
T cd03288         203 F-ADRTVVTI  211 (257)
T ss_pred             c-CCCEEEEE
Confidence            4 46777655

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=6.2e-20  Score=165.35  Aligned_cols=142  Identities=16%  Similarity=0.287  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC------CcccChhhhHh----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY------PVAMDIRELIS----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y------~~~~~v~e~i~----   58 (247)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.+...         ..++|      ....++++++.    
T Consensus       109 e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~  188 (329)
T PRK14257        109 KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR  188 (329)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH
Confidence            4689999999999999999999986     579999999987631         22333      11357777775    


Q ss_pred             -------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   +.++++.+++.+..  ..-.....+++|+  ++.||||++.  +|+++|+||||+ ||+.+...+. 
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i~-  265 (329)
T PRK14257        189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKIE-  265 (329)
T ss_pred             hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         22345666653210  0001123455554  3899999999  999999999999 9999998877 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +.++.+.+ +.+++++    +|.+.....+++
T Consensus       266 ~~i~~l~~-~~Tii~i----TH~l~~i~~~~D  292 (329)
T PRK14257        266 ELILELKK-KYSIIIV----THSMAQAQRISD  292 (329)
T ss_pred             HHHHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence            88888865 5777666    465555445444

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.2e-20  Score=160.91  Aligned_cols=142  Identities=18%  Similarity=0.256  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC-----------CCCCCC-Cc-----ccChhhhHh--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PV-----AMDIRELIS--   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~-----------~~~~~y-~~-----~~~v~e~i~--   58 (247)
                      -+++|+||||||||||+++|+|+.+|     ++|+|.++|.+..           ...++| ++     ..++++++.  
T Consensus        43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~  122 (265)
T PRK14252         43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG  122 (265)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence            47899999999999999999999875     7999999875431           112333 11     126666654  


Q ss_pred             ---------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           59 ---------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        59 ---------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                     +.++++.+++.+.  .........++.|.  ++.||++++.  +|+++|+|||++ ||+.++..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l  200 (265)
T PRK14252        123 LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATASI  200 (265)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence                           1234445555310  00001122355543  3899999999  999999999999 999999998


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      . ++++++++ +.+++++    +|...+...+++
T Consensus       201 ~-~~l~~l~~-~~tiiiv----th~~~~~~~~~d  228 (265)
T PRK14252        201 E-ELISDLKN-KVTILIV----THNMQQAARVSD  228 (265)
T ss_pred             H-HHHHHHHh-CCEEEEE----ecCHHHHHHhCC
Confidence            8 88888865 5677655    355554445544

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.9e-20  Score=177.26  Aligned_cols=138  Identities=15%  Similarity=0.152  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---CCCCC--CCCcccChhhhHh-----------HHHHHHHc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVMEEL   66 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---~~~~~--~y~~~~~v~e~i~-----------~~~~l~~~   66 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|...   -.+..  .+++..++.+++.           ++++++.+
T Consensus       346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~  425 (530)
T PRK15064        346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL  425 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc
Confidence            37899999999999999999999999999999876321   11221  1233456666542           45678888


Q ss_pred             CCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844           67 GLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (247)
Q Consensus        67 ~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (247)
                      ++. ......  ...+++|++  +.||++++.  +|+++|+||||+ ||+.++..+. ++++++   +.+++++    +|
T Consensus       426 ~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v----sH  493 (530)
T PRK15064        426 LFSQDDIKKS--VKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFV----SH  493 (530)
T ss_pred             CCChhHhcCc--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEE----eC
Confidence            884 222222  345666654  899999999  999999999999 9999998887 777665   3466555    45


Q ss_pred             cccchhHHhh
Q 025844          143 FITDVTKFIS  152 (247)
Q Consensus       143 ~~~d~~~~~s  152 (247)
                      .......+++
T Consensus       494 d~~~~~~~~d  503 (530)
T PRK15064        494 DREFVSSLAT  503 (530)
T ss_pred             CHHHHHHhCC
Confidence            5554444444

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.83  E-value=1.6e-20  Score=150.02  Aligned_cols=106  Identities=18%  Similarity=0.120  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .+++|+||||||||||+++|+|+++|++|+|+++|.    ..+.|.+.                              ++
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~------------------------------lS   72 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ------------------------------LS   72 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc------------------------------CC
Confidence            478999999999999999999999999999999873    23334111                              22


Q ss_pred             hh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844           83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus        83 ~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++   +.+++++    +|...+...+++
T Consensus        73 ~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~----th~~~~~~~~~d  135 (144)
T cd03221          73 GGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILV----SHDRYFLDQVAT  135 (144)
T ss_pred             HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEE----ECCHHHHHHhCC
Confidence            22  34899999999  999999999999 9999998887 777766   3466555    354444444433

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.83  E-value=2e-20  Score=178.17  Aligned_cols=130  Identities=20%  Similarity=0.216  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV-----AMDIRELIS----------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~-----~~~v~e~i~----------~~   60 (247)
                      -.++|+||+|||||||++.|+|+++|++|+|.++|.|...      +.++| +|     +-|++||+.          +.
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~  441 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW  441 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence            3589999999999999999999999999999999977642      23444 22     348888886          44


Q ss_pred             HHHHHcCCCC------CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..++..      .|-...   .-..+++|+  |.+||||+..  +|+++||||||+ ||..+.+.+. +.++++ .
T Consensus       442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~-~  517 (529)
T TIGR02868       442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAA-L  517 (529)
T ss_pred             HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHh-c
Confidence            5666555532      110000   002355554  4899999999  999999999999 9999998888 666665 3


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .++|+++|
T Consensus       518 ~~~TvIiI  525 (529)
T TIGR02868       518 SGKTVVVI  525 (529)
T ss_pred             CCCEEEEE
Confidence            46777666

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.83  E-value=1.6e-20  Score=179.58  Aligned_cols=128  Identities=24%  Similarity=0.319  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~------------   58 (247)
                      .++|+||||||||||+++++|+++|++|+|.++|.+...       +.+.| ++     +-|++|++.            
T Consensus       346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~  425 (544)
T TIGR01842       346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKII  425 (544)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHH
Confidence            689999999999999999999999999999999976532       12232 11     236777764            


Q ss_pred             -------HHHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 -------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 -------~~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                             +++.++.+  |+....+..  -..+++|+  +++|||++..  +|+++|+||||+ ||+.+...+. +.++++
T Consensus       426 ~~~~~~~~~~~i~~l~~gl~t~~~~~--g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~  500 (544)
T TIGR01842       426 EAAKLAGVHELILRLPDGYDTVIGPG--GATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKAL  500 (544)
T ss_pred             HHHHHhChHHHHHhCccccccccCCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHHH
Confidence                   22333333  222211111  12355554  4899999999  999999999999 9999999988 777777


Q ss_pred             HhCCCeEEEE
Q 025844          127 KSRNFNVCAV  136 (247)
Q Consensus       127 ~~~~~~ii~v  136 (247)
                      ...+.+++++
T Consensus       501 ~~~~~tvi~i  510 (544)
T TIGR01842       501 KARGITVVVI  510 (544)
T ss_pred             hhCCCEEEEE
Confidence            5456777666

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.9e-20  Score=163.90  Aligned_cols=142  Identities=20%  Similarity=0.279  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHhH---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~~---   59 (247)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..++| ++     ..++++++..   
T Consensus        72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  151 (305)
T PRK14264         72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPR  151 (305)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHh
Confidence            3689999999999999999999986     689999999876431         12333 11     1256655542   


Q ss_pred             --------------------------HHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc
Q 025844           60 --------------------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        60 --------------------------~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~  109 (247)
                                                .++++.+++.+..  ........+++|+  ++.||++++.  +|++||+|||++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEPts  229 (305)
T PRK14264        152 KHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEPAS  229 (305)
T ss_pred             hcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcc
Confidence                                      2334445542100  0000113455554  3899999999  999999999999


Q ss_pred             -ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                       ||+.++..+. ++++++++ +.+++++    +|.......+++
T Consensus       230 gLD~~~~~~l~-~~L~~~~~-~~tiiiv----tH~~~~i~~~~d  267 (305)
T PRK14264        230 ALDPIATSKIE-DLIEELAE-EYTVVVV----THNMQQAARISD  267 (305)
T ss_pred             cCCHHHHHHHH-HHHHHHhc-CCEEEEE----EcCHHHHHHhcC
Confidence             9999999988 88888866 4666555    455554444444

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.83  E-value=7.7e-21  Score=186.29  Aligned_cols=128  Identities=20%  Similarity=0.154  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~   60 (247)
                      -.++|+||||||||||+|+|+|+++|++|+|.++|.|...       +.++| +|     +-|++||+.         +.
T Consensus       480 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~  559 (686)
T TIGR03797       480 EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW  559 (686)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHH
Confidence            3589999999999999999999999999999999987643       34444 22     337888885         34


Q ss_pred             HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..++.+      .|-..   ..-..+++|+  +.+||||+..  +|+++||||||+ ||+.+.+.+. +.++++  
T Consensus       560 ~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~--  634 (686)
T TIGR03797       560 EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL--  634 (686)
T ss_pred             HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh--
Confidence            5555555432      11000   0002355554  4899999999  999999999999 9999998887 555554  


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                       +.|+++|
T Consensus       635 -~~T~IiI  641 (686)
T TIGR03797       635 -KVTRIVI  641 (686)
T ss_pred             -CCeEEEE
Confidence             4566655

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.83  E-value=5.7e-20  Score=173.66  Aligned_cols=129  Identities=20%  Similarity=0.287  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCC--------CCCCCC-Cc--------ccChhhhH-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA--------AENFDY-PV--------AMDIRELI-------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~--------~~~~~y-~~--------~~~v~e~i-------   57 (247)
                      -+++|+||||||||||+++|+|+.++ ++|+|+++|.+..        ...++| ++        ..++++++       
T Consensus       287 e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~  366 (490)
T PRK10938        287 EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS  366 (490)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence            37899999999999999999998875 6999999986531        112333 11        11233221       


Q ss_pred             -------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           58 -------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        58 -------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                   .++++++.+++.+ .....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       367 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-  441 (490)
T PRK10938        367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADAP--FHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVR-  441 (490)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCCchhhccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-
Confidence                         2467888899875 33332  345777654  899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHhCCC-eEEEE
Q 025844          121 NFVDHLKSRNF-NVCAV  136 (247)
Q Consensus       121 ~ll~~l~~~~~-~ii~v  136 (247)
                      ++++++++++. +++++
T Consensus       442 ~~L~~l~~~~~~tviiv  458 (490)
T PRK10938        442 RFVDVLISEGETQLLFV  458 (490)
T ss_pred             HHHHHHHhcCCcEEEEE
Confidence            99999876654 46555

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.83  E-value=1.4e-20  Score=169.26  Aligned_cols=161  Identities=19%  Similarity=0.267  Sum_probs=124.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------------CCCCC---CcccChhhhHh------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY---PVAMDIRELIS------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------------~~~~y---~~~~~v~e~i~------   58 (247)
                      .++|+|.+|||||||-++|.+++++. |.|++.|.+...                -.-||   .|.++|.+.|.      
T Consensus       315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh  393 (534)
T COG4172         315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH  393 (534)
T ss_pred             eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence            57999999999999999999999987 999999987642                01133   56778888775      


Q ss_pred             ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                  +.++|+++||.|+.--.|+ +.+++|++  .+||||++.  +|++++|||||+ ||...+.+++ +++
T Consensus       394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-hEFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~LL  469 (534)
T COG4172         394 EPKLSAAERDQRVIEALEEVGLDPATRNRYP-HEFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DLL  469 (534)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCChhHhhcCC-cccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HHH
Confidence                        7899999999998776776 45777765  899999999  999999999999 9999999999 999


Q ss_pred             HHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhhcc
Q 025844          124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN  189 (247)
Q Consensus       124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~  189 (247)
                      +.|.+ .|.+-+++    +|.+.-....|.               .+-|+-....+++. .-+.+++
T Consensus       470 r~LQ~k~~LsYLFI----SHDL~VvrAl~~---------------~viVm~~GkiVE~G-~~~~if~  516 (534)
T COG4172         470 RDLQQKHGLSYLFI----SHDLAVVRALCH---------------RVIVMRDGKIVEQG-PTEAVFA  516 (534)
T ss_pred             HHHHHHhCCeEEEE----eccHHHHHHhhc---------------eEEEEeCCEEeeeC-CHHHHhc
Confidence            99975 36554444    566553444333               45567667677665 4444444

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.83  E-value=5.5e-20  Score=176.18  Aligned_cols=137  Identities=18%  Similarity=0.148  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--C--CCCC-CCCcccChhhhHh--------------HHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A--AENF-DYPVAMDIRELIS--------------LEDVM   63 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~--~~~~-~y~~~~~v~e~i~--------------~~~~l   63 (247)
                      -+++|+||||||||||+++|+|+++|++|+|++.+ +.  +  .+.. .+.+..++.+++.              .++++
T Consensus       349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l  427 (552)
T TIGR03719       349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV  427 (552)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHH
Confidence            47899999999999999999999999999999843 21  0  1221 1234456666553              34678


Q ss_pred             HHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025844           64 EELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL  139 (247)
Q Consensus        64 ~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~  139 (247)
                      +.+++.. .....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++++++.  + +++++   
T Consensus       428 ~~~~l~~~~~~~~--~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viiv---  496 (552)
T TIGR03719       428 GRFNFKGSDQQKK--VGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVI---  496 (552)
T ss_pred             HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEE---
Confidence            8888853 22222  345777654  899999999  999999999999 9999998888 7777762  3 56544   


Q ss_pred             ccccccchhHHhh
Q 025844          140 DSQFITDVTKFIS  152 (247)
Q Consensus       140 d~~~~~d~~~~~s  152 (247)
                       +|.......+++
T Consensus       497 -sHd~~~~~~~~d  508 (552)
T TIGR03719       497 -SHDRWFLDRIAT  508 (552)
T ss_pred             -eCCHHHHHHhCC
Confidence             465554555544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.83  E-value=1.5e-19  Score=159.57  Aligned_cols=130  Identities=18%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCCCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGPNG   72 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~~~   72 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+.+ .++++++.         +.+.++.+++.+..
T Consensus        64 e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l  142 (282)
T cd03291          64 EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDI  142 (282)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHH
Confidence            3689999999999999999999999999999987621 0111111122 26666643         13334444442210


Q ss_pred             ch---------hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           73 GL---------IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        73 ~~---------~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..         ......++.|+  ++.||++++.  +|+++|+|||++ ||+.++..+.+.+++.++ .+.+++++
T Consensus       143 ~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiii  215 (282)
T cd03291         143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILV  215 (282)
T ss_pred             HhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence            00         00012455554  3899999999  999999999999 999999888733556664 46677655

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.83  E-value=7.4e-20  Score=175.48  Aligned_cols=137  Identities=18%  Similarity=0.098  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C--CCCCCCCCcccChhhhHh---------------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELIS---------------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~--~~~~~~y~~~~~v~e~i~---------------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+.. .  -.+...+.+.+++.+++.                     
T Consensus        34 e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~  113 (556)
T PRK11819         34 AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA  113 (556)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999986421 1  112222233456666553                     


Q ss_pred             -------------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEe
Q 025844           59 -------------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD  105 (247)
Q Consensus        59 -------------------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilD  105 (247)
                                                     +.++++.+|+.. ...  ....+++|++  +.||++++.  +|+++|||
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~vlLLD  188 (556)
T PRK11819        114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA--KVTKLSGGERRRVALCRLLLE--KPDMLLLD  188 (556)
T ss_pred             cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence                                           223445556632 222  2356777654  899999999  99999999


Q ss_pred             CCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      |||+ ||+.+...+. ++++++   +.+++++    +|.......+++
T Consensus       189 EPt~~LD~~~~~~l~-~~L~~~---~~tviii----sHd~~~~~~~~d  228 (556)
T PRK11819        189 EPTNHLDAESVAWLE-QFLHDY---PGTVVAV----THDRYFLDNVAG  228 (556)
T ss_pred             CCCCcCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcC
Confidence            9999 9999998877 777765   2366555    455554445444

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.83  E-value=5.9e-20  Score=176.12  Aligned_cols=137  Identities=16%  Similarity=0.127  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC----CCCCC-CCCcccChhhhHh--------------HHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVM   63 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~----~~~~~-~y~~~~~v~e~i~--------------~~~~l   63 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+ +.    ..+.. .+.+..++.+++.              .++++
T Consensus       351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l  429 (556)
T PRK11819        351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV  429 (556)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence            47899999999999999999999999999999843 21    11222 2334556776653              34578


Q ss_pred             HHcCCCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025844           64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL  139 (247)
Q Consensus        64 ~~~~L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~  139 (247)
                      +.+++.+. ....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++++.+.  + +++++   
T Consensus       430 ~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~v---  498 (556)
T PRK11819        430 GRFNFKGGDQQKK--VGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVI---  498 (556)
T ss_pred             HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEE---
Confidence            88888532 1222  345777654  899999999  999999999999 9999998888 7777762  3 55544   


Q ss_pred             ccccccchhHHhh
Q 025844          140 DSQFITDVTKFIS  152 (247)
Q Consensus       140 d~~~~~d~~~~~s  152 (247)
                       +|.......+++
T Consensus       499 -tHd~~~~~~~~d  510 (556)
T PRK11819        499 -SHDRWFLDRIAT  510 (556)
T ss_pred             -ECCHHHHHHhCC
Confidence             465555555544

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=2.6e-19  Score=143.72  Aligned_cols=128  Identities=19%  Similarity=0.284  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC------C--------------CCCCCCcccChhhhHh-----
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------A--------------ENFDYPVAMDIRELIS-----   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~------~--------------~~~~y~~~~~v~e~i~-----   58 (247)
                      .+.++||+|+|||||+|.+.=+.-|.+|+..+-|....      +              +.....|.++|-+++-     
T Consensus        30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k  109 (242)
T COG4161          30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR  109 (242)
T ss_pred             EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence            46899999999999999999999999999999875321      1              1122256677776652     


Q ss_pred             ------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                  ..++++++.|.+..++. ++ .+++|  ++++||||+++  +|++++|||||+ |||....++. .++
T Consensus       110 v~gl~~~qa~~~a~ellkrlrl~~~adr~-pl-hlsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~ii  184 (242)
T COG4161         110 VLGLSKDQALARAEKLLKRLRLKPYADRY-PL-HLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SII  184 (242)
T ss_pred             HhCCCHHHHHHHHHHHHHHhccccccccC-ce-ecccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHH
Confidence                        57788888888876543 33 24444  35999999999  999999999999 9999999999 999


Q ss_pred             HHHHhCCCeEEEE
Q 025844          124 DHLKSRNFNVCAV  136 (247)
Q Consensus       124 ~~l~~~~~~ii~v  136 (247)
                      ++|...|.+-++|
T Consensus       185 kel~~tgitqviv  197 (242)
T COG4161         185 KELAETGITQVIV  197 (242)
T ss_pred             HHHHhcCceEEEE
Confidence            9998889886555

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.82  E-value=3.5e-20  Score=178.74  Aligned_cols=130  Identities=16%  Similarity=0.120  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~   60 (247)
                      -.++|+|+||||||||+++|+|+++|++|+|.++|.+...       +.++| +|     +-|+++|+.         +.
T Consensus       368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~  447 (592)
T PRK10790        368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW  447 (592)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence            3589999999999999999999999999999999987542       33444 22     337888875         45


Q ss_pred             HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..|+..      +|-..   ..-..+++|+  +.+|||+++.  +|+++||||||+ ||+.+.+.+. +.++++.+
T Consensus       448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~  524 (592)
T PRK10790        448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE  524 (592)
T ss_pred             HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC
Confidence            5666655431      11000   0012355554  4899999999  999999999999 9999998888 77777644


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                       ++++++|
T Consensus       525 -~~tvIiv  531 (592)
T PRK10790        525 -HTTLVVI  531 (592)
T ss_pred             -CCEEEEE
Confidence             5677665

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.82  E-value=4.9e-20  Score=148.77  Aligned_cols=120  Identities=23%  Similarity=0.236  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .+++|+||||||||||+++|+|.++|.+|+++++|.+.....              ..++....++-+.         ++
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q---------lS   82 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ---------LS   82 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee---------CC
Confidence            478999999999999999999999999999999986543210              0001111111110         33


Q ss_pred             hh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844           83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus        83 ~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .|  .++.++++++.  +|+++++|||++ +|+.++..+. ++++++.+.+.+++++    +|...+...+++
T Consensus        83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~----sh~~~~~~~~~d  148 (157)
T cd00267          83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIV----THDPELAELAAD  148 (157)
T ss_pred             HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHhCC
Confidence            33  34889999999  999999999999 9999998888 8888876656677555    455554444433

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.82  E-value=6.7e-20  Score=176.63  Aligned_cols=129  Identities=16%  Similarity=0.216  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -.++|+||+|||||||++.|+|++ |++|+|.++|.|...       +.++| +|     +-|++||+.          +
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei  455 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQL  455 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHH
Confidence            358999999999999999999999 899999999987642       23444 22     347888885          3


Q ss_pred             HHHHHHcCCCC------CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++.+      +|-...   .-..+++|+  |.+||||+..  +|+++||||||+ ||..+.+.+. +.++++.
T Consensus       456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~~~~  532 (588)
T PRK11174        456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALNAAS  532 (588)
T ss_pred             HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence            34444433321      110000   002355554  4899999999  999999999999 9999999988 7777774


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       .++|+++|
T Consensus       533 -~~~TvIiI  540 (588)
T PRK11174        533 -RRQTTLMV  540 (588)
T ss_pred             -CCCEEEEE
Confidence             46777666

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.82  E-value=1.5e-19  Score=173.55  Aligned_cols=128  Identities=21%  Similarity=0.258  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -.++|+||+||||||+++.|.++++|++|+|.++|.|...       +.++| +|     +-|+++|+.          +
T Consensus       356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei  435 (567)
T COG1132         356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI  435 (567)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence            3579999999999999999999999999999999987643       33444 22     347888886          2


Q ss_pred             HHHHH---------Hc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           60 EDVME---------EL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        60 ~~~l~---------~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                      .++++         .+  |+...-+..  -..+++|+  +.+|||++..  +|+++||||||+ +|..+...+. +.++.
T Consensus       436 ~~a~k~a~~~d~I~~lp~g~dt~vge~--G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~~  510 (567)
T COG1132         436 EEALKLANAHEFIANLPDGYDTIVGER--GVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALKK  510 (567)
T ss_pred             HHHHHHhChHHHHHhCcccccceecCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHHH
Confidence            23333         32  222111100  02355554  4899999999  999999999999 9999998888 77776


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      +. +++|+++|
T Consensus       511 l~-~~rT~iiI  520 (567)
T COG1132         511 LL-KGRTTLII  520 (567)
T ss_pred             Hh-cCCEEEEE
Confidence            65 45565554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.82  E-value=1.3e-19  Score=173.72  Aligned_cols=137  Identities=17%  Similarity=0.066  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C--CCCCCCCCcccChhhhHhH--------------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL--------------------   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~--~~~~~~y~~~~~v~e~i~~--------------------   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+.. +  ..+.....+++|+.+++..                    
T Consensus        32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~  111 (552)
T TIGR03719        32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA  111 (552)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999986421 1  0122222334566666531                    


Q ss_pred             --------------------------------HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEe
Q 025844           60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD  105 (247)
Q Consensus        60 --------------------------------~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilD  105 (247)
                                                      .++++.+++.. ...  ....+++|++  ++||++++.  +|+++|||
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~lLLLD  186 (552)
T TIGR03719       112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA--DVTKLSGGERRRVALCRLLLS--KPDMLLLD  186 (552)
T ss_pred             cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence                                            12334445532 111  2345777654  899999999  99999999


Q ss_pred             CCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      |||+ ||+.++..+. ++++++   +.++|+|    +|.......+++
T Consensus       187 EPt~~LD~~~~~~l~-~~L~~~---~~tvIii----sHd~~~~~~~~d  226 (552)
T TIGR03719       187 EPTNHLDAESVAWLE-QHLQEY---PGTVVAV----THDRYFLDNVAG  226 (552)
T ss_pred             CCCCCCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcC
Confidence            9999 9999998877 766654   3466555    354444444433

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.82  E-value=6.5e-20  Score=174.67  Aligned_cols=130  Identities=22%  Similarity=0.249  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++|      -.+-|++||+.          +
T Consensus       349 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i  428 (529)
T TIGR02857       349 ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEI  428 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHH
Confidence            3689999999999999999999999999999999987542       22333      22458888875          4


Q ss_pred             HHHHHHcCCCC------CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++.+      +|-...   .-..+++|+  +.++||++..  +|+++|+||||+ +|+.+.+.+. +.++++.
T Consensus       429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~~  505 (529)
T TIGR02857       429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRALA  505 (529)
T ss_pred             HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHhc
Confidence            45566655532      110000   012355554  4899999999  999999999999 9999999988 7777764


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       .+.|+++|
T Consensus       506 -~~~t~i~i  513 (529)
T TIGR02857       506 -QGRTVLLV  513 (529)
T ss_pred             -CCCEEEEE
Confidence             46777666

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=9e-20  Score=170.62  Aligned_cols=129  Identities=21%  Similarity=0.241  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~~   60 (247)
                      .++|+|+||||||||++.|+|+++|++|+|.++|.+...       +++.|      -..-|++||+.          +.
T Consensus       349 ~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~  428 (559)
T COG4988         349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEII  428 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHH
Confidence            579999999999999999999999999999999987643       22333      23448999985          66


Q ss_pred             HHHHHcCCCCCCc----hhhhH----Hhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           61 DVMEELGLGPNGG----LIYCM----EHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        61 ~~l~~~~L~~~~~----~~~~~----~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                      +++++.++.+.-.    .-...    ..++.|  +|+++|||+..  +++++|+||||+ ||..+.+.+. +.+.++.+.
T Consensus       429 ~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~  505 (559)
T COG4988         429 AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAKQ  505 (559)
T ss_pred             HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHhC
Confidence            6777766543211    11111    124444  35999999999  999999999999 9999988888 888888654


Q ss_pred             CCeEEEE
Q 025844          130 NFNVCAV  136 (247)
Q Consensus       130 ~~~ii~v  136 (247)
                       ++++++
T Consensus       506 -ktvl~i  511 (559)
T COG4988         506 -KTVLVI  511 (559)
T ss_pred             -CeEEEE
Confidence             677666

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.82  E-value=1.6e-20  Score=184.68  Aligned_cols=127  Identities=14%  Similarity=0.118  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~   60 (247)
                      .++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++| +|     +-|++||+.          +.
T Consensus       507 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~  586 (710)
T TIGR03796       507 RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLV  586 (710)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHH
Confidence            589999999999999999999999999999999987632       33444 22     347888885          34


Q ss_pred             HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..++.+      .|-..   ..-..+++|+  +++|||++..  +|+++||||||+ ||..+.+.+. +.+++   
T Consensus       587 ~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~~---  660 (710)
T TIGR03796       587 RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLRR---  660 (710)
T ss_pred             HHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHHh---
Confidence            4555554432      11000   0002355554  4899999999  999999999999 9999998887 44443   


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .+.|+++|
T Consensus       661 ~~~T~Iii  668 (710)
T TIGR03796       661 RGCTCIIV  668 (710)
T ss_pred             cCCEEEEE
Confidence            46777666

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.82  E-value=6.3e-20  Score=177.91  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC----CCCCC-------CcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|..++.   +|+|.++|.+...    +.++|       .+.+||+|++.          
T Consensus        52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~  131 (617)
T TIGR00955        52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR  131 (617)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence            368999999999999999999998875   7999999976531    12333       34668888774          


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhH----HhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCM----EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~----~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                               ++++++.+|+.+..+....-    ..+++|+  ++.||++++.  +|+++++||||+ ||..+...++ +.
T Consensus       132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~  208 (617)
T TIGR00955       132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QV  208 (617)
T ss_pred             CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HH
Confidence                     67788899987644333221    1355554  4999999999  999999999999 9999999999 88


Q ss_pred             HHHHHhCCCeEEEEEeccccccc-chhHHhhhhHHH
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMAS  157 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~-d~~~~~s~~l~~  157 (247)
                      ++++++.|.+++++    +|... +....++.+++.
T Consensus       209 L~~l~~~g~tvi~~----~hq~~~~i~~~~D~i~ll  240 (617)
T TIGR00955       209 LKGLAQKGKTIICT----IHQPSSELFELFDKIILM  240 (617)
T ss_pred             HHHHHhCCCEEEEE----eCCCCHHHHHHhceEEEe
Confidence            88987778887655    24432 334455544333

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.82  E-value=1.4e-19  Score=176.34  Aligned_cols=150  Identities=18%  Similarity=0.224  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|++.++|.++..           +.+.|       .+..++.|++.      
T Consensus        35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  114 (648)
T PRK10535         35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA  114 (648)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence            3689999999999999999999999999999999976431           12333       23446666553      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                +.++++.+++.+.....  ...++.++  ++.||++++.  +|+++|+|||+. ||+.+++.+. +++++
T Consensus       115 ~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ll~~  189 (648)
T PRK10535        115 GLERKQRLLRAQELLQRLGLEDRVEYQ--PSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-AILHQ  189 (648)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHH
Confidence                      45677788886543222  23455554  3899999999  999999999999 9999999998 88999


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHh
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV  162 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~  162 (247)
                      +++++.+++++    +|....+ ..++..+....+.+
T Consensus       190 l~~~g~tiliv----sH~~~~~-~~~d~i~~l~~G~i  221 (648)
T PRK10535        190 LRDRGHTVIIV----THDPQVA-AQAERVIEIRDGEI  221 (648)
T ss_pred             HHhcCCEEEEE----CCCHHHH-HhCCEEEEEECCEE
Confidence            87667887666    3444433 23555544433333

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.82  E-value=2e-19  Score=148.44  Aligned_cols=116  Identities=20%  Similarity=0.241  Sum_probs=87.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCCCcccChhhhHhHHHHHHHcCCCCC-CchhhhHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCME   79 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y~~~~~v~e~i~~~~~l~~~~L~~~-~~~~~~~~   79 (247)
                      -+++|+||||||||||++++.+    ++|++.+.+..+..  ..+.|.     .+    .++++.+++++. ....  ..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~-----~q----~~~l~~~~L~~~~~~~~--~~   86 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFI-----DQ----LQFLIDVGLGYLTLGQK--LS   86 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEE-----hH----HHHHHHcCCCccccCCC--cC
Confidence            3689999999999999999853    68999988764321  112231     11    578899998753 2222  23


Q ss_pred             hhhhhH--HHHHHHHhhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           80 HLEDNL--DDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        80 ~l~~~~--~~~la~al~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .++.++  ++.+|++++.  +  |+++|+|||++ ||+.++..+. +.++++++.|.+++++
T Consensus        87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIiv  145 (176)
T cd03238          87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI  145 (176)
T ss_pred             cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            455554  4899999999  9  99999999999 9999999998 8888886678888766

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=8.7e-20  Score=177.47  Aligned_cols=126  Identities=15%  Similarity=0.156  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec-cCCC--CCCC-C-CCcccChhhhH----------hHHHHHHHcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AENF-D-YPVAMDIRELI----------SLEDVMEELG   67 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g-~d~~--~~~~-~-y~~~~~v~e~i----------~~~~~l~~~~   67 (247)
                      -+++|+||||||||||+++|+|.++|++|+|.+.+ ..++  .+.. . ..+..++.+.+          .+.++++.++
T Consensus       339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  418 (638)
T PRK10636        339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG  418 (638)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence            37899999999999999999999999999999853 1111  1110 1 12222343332          2567888999


Q ss_pred             CCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           68 LGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        68 L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.+. ....  ...+++|.+  ++||++++.  +|++|||||||+ ||+.++..+. ++++.+  .| +||+|
T Consensus       419 l~~~~~~~~--~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~g-tvi~v  483 (638)
T PRK10636        419 FQGDKVTEE--TRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF--EG-ALVVV  483 (638)
T ss_pred             CChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-eEEEE
Confidence            8542 2222  346777654  899999999  999999999999 9999998888 777776  24 66665

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.81  E-value=9e-20  Score=177.37  Aligned_cols=125  Identities=15%  Similarity=0.195  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----CCCC-CCCcccChhhhHh--------------HHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVM   63 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----~~~~-~y~~~~~v~e~i~--------------~~~~l   63 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+ |.+..    .+.. .+.+..++.+++.              +.+++
T Consensus       346 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l  424 (635)
T PRK11147        346 DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYL  424 (635)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHH
Confidence            368999999999999999999999999999988 43321    1211 2334456666653              34566


Q ss_pred             HHcCCCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        64 ~~~~L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.+++.+. ....  ...+++|.+  ++||++++.  +|++|||||||+ ||+.++..+. ++++.+   +.++|+|
T Consensus       425 ~~~~l~~~~~~~~--~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v  493 (635)
T PRK11147        425 QDFLFHPKRAMTP--VKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLV  493 (635)
T ss_pred             HhcCCCHHHHhCh--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEE
Confidence            77777532 1222  345777654  899999999  999999999999 9999987766 666654   3466655

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.81  E-value=1.4e-19  Score=173.49  Aligned_cols=132  Identities=14%  Similarity=0.065  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhH-------hHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELI-------SLEDV   62 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i-------~~~~~   62 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| +|     +-+++++.       .+.++
T Consensus       369 ~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~  448 (555)
T TIGR01194       369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY  448 (555)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHH
Confidence            3689999999999999999999999999999999987642       22333 22     12444432       25677


Q ss_pred             HHHcCCCCCCchhh----hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           63 MEELGLGPNGGLIY----CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        63 l~~~~L~~~~~~~~----~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      ++.+++.+......    ....+++|+  +++|||+++.  +|+++|+||||+ ||+.+.+.+.+.+++.++..+.++++
T Consensus       449 ~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii  526 (555)
T TIGR01194       449 LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII  526 (555)
T ss_pred             HHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            88888764321100    013466654  4899999999  999999999999 99999999884566666556778776


Q ss_pred             E
Q 025844          136 V  136 (247)
Q Consensus       136 v  136 (247)
                      +
T Consensus       527 i  527 (555)
T TIGR01194       527 I  527 (555)
T ss_pred             E
Confidence            6

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.81  E-value=1.2e-19  Score=178.15  Aligned_cols=129  Identities=21%  Similarity=0.212  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~   60 (247)
                      .++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++| +|     +-|++||+.          +.
T Consensus       493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~  572 (694)
T TIGR03375       493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEIL  572 (694)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHH
Confidence            589999999999999999999999999999999987642       33444 22     347888875          34


Q ss_pred             HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..++.+      .|-..   ..-..+++|+  +.+|||++..  +|+++||||||+ ||+.+...+. +.++++.+
T Consensus       573 ~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~~  649 (694)
T TIGR03375       573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLKRWLA  649 (694)
T ss_pred             HHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhC
Confidence            4455444321      11000   0002355554  4899999999  999999999999 9999999988 77777644


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                       +.|+++|
T Consensus       650 -~~T~iiI  656 (694)
T TIGR03375       650 -GKTLVLV  656 (694)
T ss_pred             -CCEEEEE
Confidence             6677665

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=6.1e-19  Score=171.57  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---CCC-C-------CCC-Cc------ccCh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAE-N-------FDY-PV------AMDI-----------   53 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---~~~-~-------~~y-~~------~~~v-----------   53 (247)
                      -+++|+||||||||||+|+|+|.++|++|+|.+.|...   ..+ .       +.| .+      .++.           
T Consensus        28 e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~  107 (638)
T PRK10636         28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDG  107 (638)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence            36899999999999999999999999999999876421   001 0       111 00      0000           


Q ss_pred             ------hh----------hHhHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844           54 ------RE----------LISLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF  113 (247)
Q Consensus        54 ------~e----------~i~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~  113 (247)
                            ..          .-.++++++.+|+.+ .....  ...+++|++  ++||++++.  +|++|||||||+ ||+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~--~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~  183 (638)
T PRK10636        108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP--VSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLD  183 (638)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHH
Confidence                  00          012556788888863 22222  356777754  999999999  999999999999 9999


Q ss_pred             hHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          114 THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       114 ~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +...+. ++++++   +.+|++|    +|.......+++
T Consensus       184 ~~~~L~-~~L~~~---~~tviiv----sHd~~~l~~~~d  214 (638)
T PRK10636        184 AVIWLE-KWLKSY---QGTLILI----SHDRDFLDPIVD  214 (638)
T ss_pred             HHHHHH-HHHHhC---CCeEEEE----eCCHHHHHHhcC
Confidence            987766 665554   4567655    355444444444

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.81  E-value=6.3e-20  Score=180.09  Aligned_cols=130  Identities=19%  Similarity=0.191  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++| +|     +-|++||+.          +
T Consensus       484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i  563 (694)
T TIGR01846       484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV  563 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999987642       23444 22     347888875          3


Q ss_pred             HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++..      .|-..   ..-..+++|+  +.+|||+++.  +|+++||||||+ ||+.+...+. +.++++.
T Consensus       564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~  640 (694)
T TIGR01846       564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMREIC  640 (694)
T ss_pred             HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh
Confidence            33444443321      10000   0012355554  4899999999  999999999999 9999999988 7777774


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       .+.+++++
T Consensus       641 -~~~t~i~i  648 (694)
T TIGR01846       641 -RGRTVIII  648 (694)
T ss_pred             -CCCEEEEE
Confidence             46777665

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.81  E-value=1e-19  Score=182.34  Aligned_cols=156  Identities=17%  Similarity=0.258  Sum_probs=125.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~~------~~~v~e~i~---------   58 (247)
                      -|.|+.|||||||||++++++|..+|++|++++.|.+...        +.++| ||      .+|.||++.         
T Consensus       592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~  671 (885)
T KOG0059|consen  592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP  671 (885)
T ss_pred             ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999999999987643        44777 33      567888774         


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                             ++..++.++|.+.+...  ...+++|.+  ..+|.+++.  +|++++||||++ +||.+++.+. ++++++++
T Consensus       672 ~~di~~~v~~ll~~~~L~~~~~~~--~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k  746 (885)
T KOG0059|consen  672 RSDIGSAIEKLLRLVGLGPYANKQ--VRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIARLRK  746 (885)
T ss_pred             hhHHHHHHHHHHHHcCChhhhccc--hhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHh
Confidence                   67888899999887666  345666653  777878888  999999999999 9999999988 99999988


Q ss_pred             CCCeEEEEEecccccccchhHHhhhhHHHhHHHhh-ccCC
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELP  167 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~-~~~p  167 (247)
                      +|..++    +.+|.+++.+..|+++-....+.++ +|.|
T Consensus       747 ~g~aii----LTSHsMeE~EaLCtR~aImv~G~l~ciGs~  782 (885)
T KOG0059|consen  747 NGKAII----LTSHSMEEAEALCTRTAIMVIGQLRCIGSP  782 (885)
T ss_pred             cCCEEE----EEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence            766663    5589999999999888666555443 3544

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.81  E-value=2.2e-19  Score=173.19  Aligned_cols=130  Identities=20%  Similarity=0.194  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| +|     +-|++||+.          +
T Consensus       362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i  441 (588)
T PRK13657        362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEM  441 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHH
Confidence            3589999999999999999999999999999999977642       33444 22     347888875          3


Q ss_pred             HHHHHHcCCCC------CCchhh---hHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~~---~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++..      .|-...   .-..+++|  +|.+|||+++.  +|+++||||||+ ||+.+...+. +.++.+.
T Consensus       442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~  518 (588)
T PRK13657        442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM  518 (588)
T ss_pred             HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence            34444444321      110000   00125554  44999999999  999999999999 9999999988 6666664


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       .++++++|
T Consensus       519 -~~~tvIii  526 (588)
T PRK13657        519 -KGRTTFII  526 (588)
T ss_pred             -cCCEEEEE
Confidence             36777666

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.81  E-value=1.9e-19  Score=172.78  Aligned_cols=130  Identities=18%  Similarity=0.124  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~-----------   58 (247)
                      -.++|+|+||||||||+++|+|+++|++|+|.++|.+...       +.+.| +     .+-|++||+.           
T Consensus       359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~  438 (571)
T TIGR02203       359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE  438 (571)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence            3689999999999999999999999999999999976532       23444 2     2447887765           


Q ss_pred             HHHHHHHcCCCC------CCch--h-hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 LEDVMEELGLGP------NGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ~~~~l~~~~L~~------~~~~--~-~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      +.++++..++.+      +|-.  + ..-..+++|+  +.+|||+++.  +|++++|||||+ ||..+.+.++ +.++++
T Consensus       439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~  515 (571)
T TIGR02203       439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERL  515 (571)
T ss_pred             HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHH
Confidence            344555555431      1100  0 0002355554  4899999999  999999999999 9999999988 777776


Q ss_pred             HhCCCeEEEE
Q 025844          127 KSRNFNVCAV  136 (247)
Q Consensus       127 ~~~~~~ii~v  136 (247)
                      . .++++++|
T Consensus       516 ~-~~~tiIii  524 (571)
T TIGR02203       516 M-QGRTTLVI  524 (571)
T ss_pred             h-CCCEEEEE
Confidence            4 45677666

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.81  E-value=2.5e-19  Score=171.44  Aligned_cols=132  Identities=17%  Similarity=0.091  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhh---H---hHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIREL---I---SLEDVM   63 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~---i---~~~~~l   63 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++| +|+     -+++++   .   .+.+++
T Consensus       350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~  429 (547)
T PRK10522        350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL  429 (547)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHH
Confidence            3689999999999999999999999999999999987542       23444 222     234443   1   256678


Q ss_pred             HHcCCCCCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           64 EELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        64 ~~~~L~~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.++++.......   .-..+++|+  +.+|||+++.  +|+++|+||||+ ||+.+...+.+.+.+.+++.+.++++|
T Consensus       430 ~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i  506 (547)
T PRK10522        430 ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI  506 (547)
T ss_pred             HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            8887765321100   002355554  4899999999  999999999999 999999888833333443347777666

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=4.1e-19  Score=177.73  Aligned_cols=128  Identities=23%  Similarity=0.249  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC-------CCCC------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~-------~~~y------~~~~~v~e~i~----------~   59 (247)
                      -.++|+||+||||||+++.|.+++.|++|+|.++|.|...-       .++.      ..+.||+||+.          +
T Consensus       380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i  459 (1228)
T KOG0055|consen  380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI  459 (1228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence            46899999999999999999999999999999999887541       2222      22557888885          2


Q ss_pred             HHHHHHcC---------------CCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           60 EDVMEELG---------------LGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        60 ~~~l~~~~---------------L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                      +++.+..+               .+..|.      .+++|  +|++|||+++.  +|++|||||||+ ||+.+.+.+. +
T Consensus       460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~  530 (1228)
T KOG0055|consen  460 EEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-E  530 (1228)
T ss_pred             HHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-H
Confidence            33332211               122221      25554  45999999999  999999999999 9999988777 8


Q ss_pred             HHHHHHhCCCeEEEE-Eecc
Q 025844          122 FVDHLKSRNFNVCAV-YLLD  140 (247)
Q Consensus       122 ll~~l~~~~~~ii~v-~l~d  140 (247)
                      .+++..+ |.|.++| |-++
T Consensus       531 ALd~~~~-grTTivVaHRLS  549 (1228)
T KOG0055|consen  531 ALDKASK-GRTTIVVAHRLS  549 (1228)
T ss_pred             HHHHhhc-CCeEEEEeeehh
Confidence            8888754 5555444 4433

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.80  E-value=4.9e-19  Score=172.21  Aligned_cols=136  Identities=17%  Similarity=0.166  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC--------CCCCCCCC-Cccc----------------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM----------------------   51 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d--------~~~~~~~y-~~~~----------------------   51 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|..        +......+ .+.+                      
T Consensus        30 e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (635)
T PRK11147         30 ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE  109 (635)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999987621        00011111 0000                      


Q ss_pred             --Chhhh--------------------HhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCC
Q 025844           52 --DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCP  107 (247)
Q Consensus        52 --~v~e~--------------------i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEP  107 (247)
                        +..++                    -.+.++++.+|+..+  .  ....+++|++  ++||++|+.  +|++||||||
T Consensus       110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--~--~~~~LSgGekqRv~LAraL~~--~P~lLLLDEP  183 (635)
T PRK11147        110 TDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD--A--ALSSLSGGWLRKAALGRALVS--NPDVLLLDEP  183 (635)
T ss_pred             cCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC--C--chhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence              00000                    024567778888632  2  2356777654  999999999  9999999999


Q ss_pred             Cc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          108 GQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       108 t~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      |+ ||+.++..+. ++++.+   +.+|++|    +|.......+++
T Consensus       184 t~~LD~~~~~~L~-~~L~~~---~~tvliv----sHd~~~l~~~~d  221 (635)
T PRK11147        184 TNHLDIETIEWLE-GFLKTF---QGSIIFI----SHDRSFIRNMAT  221 (635)
T ss_pred             CCccCHHHHHHHH-HHHHhC---CCEEEEE----eCCHHHHHHhcC
Confidence            99 9999988777 777665   2466655    354444444444

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.80  E-value=2.9e-19  Score=171.75  Aligned_cols=130  Identities=18%  Similarity=0.145  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| ++     +-|++|++.          +
T Consensus       342 ~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~  421 (569)
T PRK10789        342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEI  421 (569)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999976532       22333 11     337888775          3


Q ss_pred             HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++..      .|-..   .....+++|+  +++|||+++.  +|+++||||||+ ||+.+...+. +.++.+.
T Consensus       422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~~  498 (569)
T PRK10789        422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQWG  498 (569)
T ss_pred             HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence            44555544431      11000   0012355554  4899999999  999999999999 9999999988 7777764


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       .+.+++++
T Consensus       499 -~~~tii~i  506 (569)
T PRK10789        499 -EGRTVIIS  506 (569)
T ss_pred             -CCCEEEEE
Confidence             46777665

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.80  E-value=4.3e-19  Score=171.16  Aligned_cols=130  Identities=21%  Similarity=0.231  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| +     .+-|++|++.          +
T Consensus       362 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~  441 (585)
T TIGR01192       362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEV  441 (585)
T ss_pred             CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999876432       22333 1     2347788775          2


Q ss_pred             HHHHHHcCCCC------CCc---hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGG---LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~---~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .+.++..++..      .+-   .-.....+++|+  +++|||+++.  +|+++|+||||+ ||+.+.+.+. +.++++.
T Consensus       442 ~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~~  518 (585)
T TIGR01192       442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDALR  518 (585)
T ss_pred             HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHh
Confidence            22333322211      100   000012355554  4899999999  999999999999 9999999988 7777774


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       .+.+++++
T Consensus       519 -~~~tvI~i  526 (585)
T TIGR01192       519 -KNRTTFII  526 (585)
T ss_pred             -CCCEEEEE
Confidence             46777666

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.80  E-value=3.8e-19  Score=170.88  Aligned_cols=129  Identities=18%  Similarity=0.189  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~   60 (247)
                      .++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| +|     +-|++||+.          +.
T Consensus       368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~  447 (576)
T TIGR02204       368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVE  447 (576)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHH
Confidence            589999999999999999999999999999999976532       23444 22     347888876          34


Q ss_pred             HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..++..      .|-..   ..-..+++|+  +.++||++..  +|+++|+||||+ +|+.+.+.++ +.++.+. 
T Consensus       448 ~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~~-  523 (576)
T TIGR02204       448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETLM-  523 (576)
T ss_pred             HHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHHh-
Confidence            4555544421      11000   0012355554  4899999999  999999999999 9999998888 7777764 


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .+.+++++
T Consensus       524 ~~~t~Iii  531 (576)
T TIGR02204       524 KGRTTLII  531 (576)
T ss_pred             CCCEEEEE
Confidence            46777666

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.80  E-value=2.8e-19  Score=164.58  Aligned_cols=125  Identities=25%  Similarity=0.313  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cccc-----ChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~~-----~v~e~i~-----------   58 (247)
                      -.++||||+|||||||.|+|.|..+|.+|.|+++|-|..+       ++++| +|++     ||.|||.           
T Consensus       363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kI  442 (580)
T COG4618         363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV  442 (580)
T ss_pred             ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHH
Confidence            3689999999999999999999999999999999977643       67888 5554     7888885           


Q ss_pred             --------HHHHHHHcC------CCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 --------LEDVMEELG------LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 --------~~~~l~~~~------L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                              +.|.+-++-      +|+-|      ..+++|+  +..+|||+..  +|.+++||||-+ ||......+. +
T Consensus       443 ieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~  513 (580)
T COG4618         443 IEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-A  513 (580)
T ss_pred             HHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-H
Confidence                    344443332      22332      2355555  4899999988  999999999998 9999998888 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025844          122 FVDHLKSRNFNVCAV  136 (247)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (247)
                      .+..++++|.++++|
T Consensus       514 Ai~~~k~rG~~vvvi  528 (580)
T COG4618         514 AILAAKARGGTVVVI  528 (580)
T ss_pred             HHHHHHHcCCEEEEE
Confidence            888888888777666

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.79  E-value=4.8e-19  Score=174.33  Aligned_cols=128  Identities=16%  Similarity=0.117  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||++.|.|+++|++|+|.++|.+...       +.+.| +     .+-|++||+.          +
T Consensus       508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i  587 (711)
T TIGR00958       508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI  587 (711)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999977532       23444 2     2458888886          3


Q ss_pred             HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++.+      +|-..   ..-..+++|+  +.+|||++.+  +|+++||||||+ ||..+.+.+. + .  ..
T Consensus       588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~--~~  661 (711)
T TIGR00958       588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-S--RS  661 (711)
T ss_pred             HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-h--hc
Confidence            44555554432      11000   0002355544  4899999999  999999999999 9999887766 4 1  12


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      ..++|+++|
T Consensus       662 ~~~~TvIiI  670 (711)
T TIGR00958       662 RASRTVLLI  670 (711)
T ss_pred             cCCCeEEEE
Confidence            346777666

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.79  E-value=1e-19  Score=143.01  Aligned_cols=105  Identities=25%  Similarity=0.267  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhH---hHHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI---SLEDVMEE   65 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i---~~~~~l~~   65 (247)
                      -+++|+||||||||||+++|+|..+|++|.|.++|.+...       ..+.|       .+..+++++.   .++++++.
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~   91 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKK   91 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3689999999999999999999999999999999877643       12222       2345677664   37788888


Q ss_pred             cCCCCCCchhh--hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc
Q 025844           66 LGLGPNGGLIY--CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        66 ~~L~~~~~~~~--~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~  109 (247)
                      +++........  ....++.+.  +++||++++.  +|+++|+||||+
T Consensus        92 l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~  137 (137)
T PF00005_consen   92 LGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN  137 (137)
T ss_dssp             TTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence            88766322221  114456554  3899999999  999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.79  E-value=2.9e-19  Score=175.71  Aligned_cols=128  Identities=19%  Similarity=0.193  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------H
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L   59 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------~   59 (247)
                      .++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++| +|     +-|++||+.           +
T Consensus       502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i  581 (708)
T TIGR01193       502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI  581 (708)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence            589999999999999999999999999999999987532       23444 22     337777775           2


Q ss_pred             HHHHHHcCCCC------CCch--h-hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~--~-~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++..      .|-.  + ..-..+++|+  +.+||||+..  +|+++||||||+ ||..+...+. +.++.+ 
T Consensus       582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L~~~-  657 (708)
T TIGR01193       582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNLLNL-  657 (708)
T ss_pred             HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHh-
Confidence            33444444321      1100  0 0002355554  4899999999  999999999999 9999998888 656655 


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       .+.|+++|
T Consensus       658 -~~~T~Iii  665 (708)
T TIGR01193       658 -QDKTIIFV  665 (708)
T ss_pred             -cCCEEEEE
Confidence             36677655

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.79  E-value=4.2e-19  Score=184.90  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC----CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|..++  .+|+|.++|.+...    ..++|       .+.+|++|++.           
T Consensus       907 el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~  986 (1470)
T PLN03140        907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV  986 (1470)
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC
Confidence            36899999999999999999999763  68999999976531    12333       34567887763           


Q ss_pred             --------HHHHHHHcCCCCCCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                              ++++++.++|.+..+....   ...+++|+  ++.||++|+.  +|++|++||||+ ||..+...++ ++++
T Consensus       987 ~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~ 1063 (1470)
T PLN03140        987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVR 1063 (1470)
T ss_pred             CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence                    4568888898764333321   12355554  3999999999  999999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE
Q 025844          125 HLKSRNFNVCAV  136 (247)
Q Consensus       125 ~l~~~~~~ii~v  136 (247)
                      ++++.|.+|+++
T Consensus      1064 ~l~~~g~tVI~t 1075 (1470)
T PLN03140       1064 NTVDTGRTVVCT 1075 (1470)
T ss_pred             HHHHCCCEEEEE
Confidence            998778887665

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.5e-18  Score=146.16  Aligned_cols=131  Identities=18%  Similarity=0.189  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~-------   58 (247)
                      .+.+|+||||||||||.++|+|.-  ++++|+|.++|.|+..               |+.+-.+.+++.+++.       
T Consensus        31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~  110 (251)
T COG0396          31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR  110 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence            478999999999999999999985  7899999999988632               2211123445555443       


Q ss_pred             ------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                                  +++.++.+++.+.-..++.-+-+++|  -|..|++.++.  +|++.|||||-+ ||..+-+.+. +.+
T Consensus       111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~-~~i  187 (251)
T COG0396         111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVA-EGI  187 (251)
T ss_pred             ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHH-HHH
Confidence                        56788889998732222222234433  23778888888  999999999999 9999998888 999


Q ss_pred             HHHHhCCCeEEEE
Q 025844          124 DHLKSRNFNVCAV  136 (247)
Q Consensus       124 ~~l~~~~~~ii~v  136 (247)
                      +.+++.+.+++++
T Consensus       188 ~~lr~~~~~~liI  200 (251)
T COG0396         188 NALREEGRGVLII  200 (251)
T ss_pred             HHHhcCCCeEEEE
Confidence            9998888888766

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=1.2e-18  Score=168.38  Aligned_cols=131  Identities=21%  Similarity=0.302  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeccCCCC-----------CCCCCCcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~---~~G~v~i~g~d~~~-----------~~~~y~~~~~v~e~i~----------   58 (247)
                      -+.||+||+|||||||+++|+|-...   .+|+|.++|.....           |+-.+.+.+||+|.+.          
T Consensus        57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~  136 (613)
T KOG0061|consen   57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS  136 (613)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence            46899999999999999999999874   78999999954322           2223356789999875          


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhH---Hhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCM---EHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~---~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                               ++++++++||..-.+.+..-   ..+++|  .|+.+|..++.  +|.++++||||+ ||..+..+++ +++
T Consensus       137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv-~~L  213 (613)
T KOG0061|consen  137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVV-QLL  213 (613)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHH-HHH
Confidence                     88999999997432222110   113333  34999999999  999999999999 9999999999 999


Q ss_pred             HHHHhCCCeEEEE
Q 025844          124 DHLKSRNFNVCAV  136 (247)
Q Consensus       124 ~~l~~~~~~ii~v  136 (247)
                      ++++++|++||++
T Consensus       214 k~lA~~grtVi~t  226 (613)
T KOG0061|consen  214 KRLARSGRTVICT  226 (613)
T ss_pred             HHHHhCCCEEEEE
Confidence            9999888888765

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.78  E-value=1.2e-18  Score=140.48  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhHh------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y---~~---~~~v~e~i~------------   58 (247)
                      .++|+||+|||||||+|+++.++.|++|.+++.|.+...       +.+.|   .|   .-||.|++-            
T Consensus        31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr  110 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR  110 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCCh
Confidence            578999999999999999999999999999999988643       23333   11   125666653            


Q ss_pred             --HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCe
Q 025844           59 --LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFN  132 (247)
Q Consensus        59 --~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~  132 (247)
                        ..+.+++++++..--.. ....+++|  ++.+|+|.|.-  -|++|+|||||+ ||+.+.+.+- +++.++- .++..
T Consensus       111 ~aa~~llar~~l~~~~L~k-~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~q~vA  186 (223)
T COG4619         111 AAALDLLARFALPDSILTK-NITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVREQNVA  186 (223)
T ss_pred             HHHHHHHHHcCCchhhhcc-hhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhhhceE
Confidence              67889999997642111 12344444  45899999988  999999999999 9999999987 7777765 45677


Q ss_pred             EEEEE
Q 025844          133 VCAVY  137 (247)
Q Consensus       133 ii~v~  137 (247)
                      ++.|.
T Consensus       187 v~WiT  191 (223)
T COG4619         187 VLWIT  191 (223)
T ss_pred             EEEEe
Confidence            76663

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.78  E-value=9.8e-19  Score=182.13  Aligned_cols=131  Identities=16%  Similarity=0.201  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC---CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|..+   +++|+|.++|.+...   +.++|       .+..|++|++.           
T Consensus       790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~  869 (1394)
T TIGR00956       790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV  869 (1394)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence            3689999999999999999999997   688999999976531   22333       23467888764           


Q ss_pred             --------HHHHHHHcCCCCCCchhhh--HHhhhhhH--HHHHHHHhhcCCCCC-EEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYC--MEHLEDNL--DDWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~--~~~l~~~~--~~~la~al~~~~~p~-~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                              ++++++.+++.+..+....  ...+++|+  ++.||++++.  +|+ +|+|||||+ ||..+...++ ++++
T Consensus       870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~  946 (1394)
T TIGR00956       870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMR  946 (1394)
T ss_pred             CHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence                    3578888888764433221  01355554  3899999999  997 999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE
Q 025844          125 HLKSRNFNVCAV  136 (247)
Q Consensus       125 ~l~~~~~~ii~v  136 (247)
                      +++++|.+|+++
T Consensus       947 ~la~~g~tvI~t  958 (1394)
T TIGR00956       947 KLADHGQAILCT  958 (1394)
T ss_pred             HHHHcCCEEEEE
Confidence            997778887665

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=2.5e-18  Score=164.06  Aligned_cols=149  Identities=19%  Similarity=0.273  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y---~~---~~~v~e~i~-----------   58 (247)
                      -+++++|||||||||+.+.|..++.|++|+|.++|.|+..       +.+++   .|   .-+|+|||.           
T Consensus       495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i  574 (716)
T KOG0058|consen  495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI  574 (716)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHH
Confidence            4789999999999999999999999999999999988754       22333   11   337778775           


Q ss_pred             --------HHHHHHHcC------CCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 --------LEDVMEELG------LGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 --------~~~~l~~~~------L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                              +.+.+..+.      .|+.|.      .+++|  +|.+|||||.+  +|.+|||||.|+ ||..+...+- +
T Consensus       575 ~~AAk~ANah~FI~~~p~gY~T~VGEkG~------qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq-~  645 (716)
T KOG0058|consen  575 EAAAKMANAHEFITNFPDGYNTVVGEKGS------QLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ-E  645 (716)
T ss_pred             HHHHHHhChHHHHHhCccccccccCCccc------cccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-H
Confidence                    223333321      233332      35554  45999999999  999999999999 9999876665 7


Q ss_pred             HHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      .+.++.+ +.||+++    +|.++....              .  -+|.|+.|....+..
T Consensus       646 aL~~~~~-~rTVlvI----AHRLSTV~~--------------A--d~Ivvi~~G~V~E~G  684 (716)
T KOG0058|consen  646 ALDRLMQ-GRTVLVI----AHRLSTVRH--------------A--DQIVVIDKGRVVEMG  684 (716)
T ss_pred             HHHHhhc-CCeEEEE----ehhhhHhhh--------------c--cEEEEEcCCeEEecc
Confidence            8877754 4777666    244332211              1  167788888777654

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.78  E-value=3.7e-18  Score=139.56  Aligned_cols=130  Identities=19%  Similarity=0.213  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------------CCCCCCcccChhhhH---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELI---------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------------~~~~y~~~~~v~e~i---------   57 (247)
                      -.+++||.||||||||.|+++|+++|++|++.++|.....                .+..+.|.+.+...+         
T Consensus        40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~  119 (267)
T COG4167          40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD  119 (267)
T ss_pred             cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhccc
Confidence            3579999999999999999999999999999999865432                112222222222222         


Q ss_pred             --------hHHHHHHHcCCCCCCchhhhHHhhh--hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           58 --------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        58 --------~~~~~l~~~~L~~~~~~~~~~~~l~--~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                              .+.+-++.+||-|..+..+. +.++  +++++++|||+..  +|+++|.||.-. ||...+.++. +++-+|
T Consensus       120 ~~~~~R~~~i~~TL~~VGL~Pdhan~~~-~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeL  195 (267)
T COG4167         120 LEPEQRRKQIFETLRMVGLLPDHANYYP-HMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLEL  195 (267)
T ss_pred             CChHHHHHHHHHHHHHhccCccccccch-hhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHH
Confidence                    26778889999886655443 2333  4456999999999  999999999987 9999999999 888888


Q ss_pred             Hh-CCCeEEEE
Q 025844          127 KS-RNFNVCAV  136 (247)
Q Consensus       127 ~~-~~~~ii~v  136 (247)
                      .+ .|.+-+.|
T Consensus       196 Qek~GiSyiYV  206 (267)
T COG4167         196 QEKQGISYIYV  206 (267)
T ss_pred             HHHhCceEEEE
Confidence            64 47766555

>PLN03232 ABC transporter C family member; Provisional

Probab=99.77  E-value=2.7e-18  Score=180.07  Aligned_cols=129  Identities=20%  Similarity=0.190  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED   61 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~~   61 (247)
                      .++|+||+|||||||+++|.|+++|++|+|.++|.|...       +.+++ +|     +-|+|+|+.         +.+
T Consensus      1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~ 1343 (1495)
T PLN03232       1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE 1343 (1495)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHH
Confidence            589999999999999999999999999999999988743       23343 22     237888885         455


Q ss_pred             HHHHcCCCCC------Cchh---hhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           62 VMEELGLGPN------GGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        62 ~l~~~~L~~~------~~~~---~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                      +++..++.+.      |-..   ..-..+++|++  .+||||+++  +|++|||||||+ +|..+.+.+. +.+++.. +
T Consensus      1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~-~ 1419 (1495)
T PLN03232       1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF-K 1419 (1495)
T ss_pred             HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-C
Confidence            6666555321      1000   00023555544  899999999  999999999999 9999987776 7777763 4


Q ss_pred             CCeEEEE
Q 025844          130 NFNVCAV  136 (247)
Q Consensus       130 ~~~ii~v  136 (247)
                      +.|+++|
T Consensus      1420 ~~TvI~I 1426 (1495)
T PLN03232       1420 SCTMLVI 1426 (1495)
T ss_pred             CCEEEEE
Confidence            6787766

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.1e-18  Score=161.82  Aligned_cols=130  Identities=22%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh----------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~----------~~   60 (247)
                      -++|+|+|||||||++|+|.+++. .+|+|+++|.|...       +-++| ||+     -||..|+.          +.
T Consensus       380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~  458 (591)
T KOG0057|consen  380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV  458 (591)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence            479999999999999999999999 89999999988743       44555 442     35666664          44


Q ss_pred             HHHHHcCCCCC------C-----chhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           61 DVMEELGLGPN------G-----GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        61 ~~l~~~~L~~~------~-----~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      ++.+++++.+-      |     +..  ...+++|  |+++++|++..  +|+++++||||+ ||..+.++++ +.+...
T Consensus       459 e~~k~a~~hd~i~~l~~GY~T~VGer--G~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~  533 (591)
T KOG0057|consen  459 EACKRAGLHDVISRLPDGYQTLVGER--GLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV  533 (591)
T ss_pred             HHHHHcCcHHHHHhccccchhhHhhc--ccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh
Confidence            55555555431      1     111  1234443  45999999999  999999999999 9999999999 555553


Q ss_pred             HhCCCeEEEE-Eecc
Q 025844          127 KSRNFNVCAV-YLLD  140 (247)
Q Consensus       127 ~~~~~~ii~v-~l~d  140 (247)
                       ..++|+|+| |-+|
T Consensus       534 -~~~rTvI~IvH~l~  547 (591)
T KOG0057|consen  534 -MSGRTVIMIVHRLD  547 (591)
T ss_pred             -cCCCeEEEEEecch
Confidence             346776655 5444

>PLN03073 ABC transporter F family; Provisional

Probab=99.77  E-value=1.3e-18  Score=170.66  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-Cc----ccChhhh--------------HhHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV----AMDIREL--------------ISLEDVM   63 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~~----~~~v~e~--------------i~~~~~l   63 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+..    .++| ++    .+++.++              -.+++++
T Consensus       536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L  611 (718)
T PLN03073        536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL  611 (718)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHH
Confidence            3689999999999999999999999999999875421    1111 00    1111111              1256788


Q ss_pred             HHcCCCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025844           64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL  139 (247)
Q Consensus        64 ~~~~L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~  139 (247)
                      +.+++.+. ....  ...+++|++  ++||++++.  +|++|||||||+ ||+.+...+. +.+...  .+ ++++|   
T Consensus       612 ~~~gl~~~~~~~~--~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~--~g-tvIiv---  680 (718)
T PLN03073        612 GSFGVTGNLALQP--MYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF--QG-GVLMV---  680 (718)
T ss_pred             HHCCCChHHhcCC--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-EEEEE---
Confidence            89998642 2222  245666654  899999999  999999999999 9999987766 544443  23 66655   


Q ss_pred             ccccccchhHHhh
Q 025844          140 DSQFITDVTKFIS  152 (247)
Q Consensus       140 d~~~~~d~~~~~s  152 (247)
                       +|.......+++
T Consensus       681 -SHd~~~i~~~~d  692 (718)
T PLN03073        681 -SHDEHLISGSVD  692 (718)
T ss_pred             -ECCHHHHHHhCC
Confidence             354443344433

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.2e-18  Score=161.36  Aligned_cols=138  Identities=19%  Similarity=0.223  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~   60 (247)
                      -++|+|++||||||+++.++|.++|++|+|.++|.+++.       +.+++ .|     +-|+|+|+.          +.
T Consensus       366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~  445 (573)
T COG4987         366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW  445 (573)
T ss_pred             eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHH
Confidence            379999999999999999999999999999999987643       12222 22     336788775          45


Q ss_pred             HHHHHcCCCCCCc-----hhhh----HHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGPNGG-----LIYC----MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~~~~-----~~~~----~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++++||.....     .-..    -..+++|  .|.+|||++.+  +.+++||||||. ||+.+.++++ +++.+.. 
T Consensus       446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL-~ll~~~~-  521 (573)
T COG4987         446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVL-ALLFEHA-  521 (573)
T ss_pred             HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHH-HHHHHHh-
Confidence            5666666643100     0000    0224443  34999999999  999999999999 9999999999 5554432 


Q ss_pred             CCCeEEEEEecccccccchhH
Q 025844          129 RNFNVCAVYLLDSQFITDVTK  149 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~  149 (247)
                      +|+|+++|    +|.....+.
T Consensus       522 ~~kTll~v----THrL~~le~  538 (573)
T COG4987         522 EGKTLLMV----THRLRGLER  538 (573)
T ss_pred             cCCeEEEE----ecccccHhh
Confidence            47898877    365554333

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.76  E-value=3.8e-18  Score=178.17  Aligned_cols=131  Identities=18%  Similarity=0.176  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC------------------------------------------------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------   28 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~------------------------------------------------------   28 (247)
                      -.++|+||+||||||+++.|.|++.|                                                      
T Consensus      1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265       1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            46899999999999999999999998                                                      


Q ss_pred             CCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HHHHHHHcCCCC------CCchhh---
Q 025844           29 VRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LEDVMEELGLGP------NGGLIY---   76 (247)
Q Consensus        29 ~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~~~l~~~~L~~------~~~~~~---   76 (247)
                      ++|+|.++|.|...       +.++| +|     +-||+||+.          ++++++..++..      +|-...   
T Consensus      1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265       1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred             CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence            59999999987642       34444 22     458999886          444555444321      110000   


Q ss_pred             hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025844           77 CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV  136 (247)
Q Consensus        77 ~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v  136 (247)
                      .-..+++|+  |++||||++.  +|++|||||||+ ||..+.+.+. +.++.+. ..+.|+|+|
T Consensus      1355 ~G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265       1355 YGKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITI 1415 (1466)
T ss_pred             CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEE
Confidence            002355554  4899999999  999999999999 9999988887 7777775 357777766

>PLN03130 ABC transporter C family member; Provisional

Probab=99.76  E-value=7.5e-18  Score=177.42  Aligned_cols=130  Identities=19%  Similarity=0.179  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~   60 (247)
                      -.+||+||+|||||||+++|.|+++|++|+|.++|.|...       +.+++ +|     +-|+|+|+.         +.
T Consensus      1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130       1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence            3689999999999999999999999999999999988753       33444 22     237888875         45


Q ss_pred             HHHHHcCCCC------CCchhh---hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~~~---~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..++.+      .|-...   .-..+++|++  .+||||+++  +|++|||||||+ +|..+.+.+. +.+++.. 
T Consensus      1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~- 1421 (1622)
T PLN03130       1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF- 1421 (1622)
T ss_pred             HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC-
Confidence            5666555421      110000   0023555544  899999999  999999999999 9999988777 7777764 


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      +++|+++|
T Consensus      1422 ~~~TvI~I 1429 (1622)
T PLN03130       1422 KSCTMLII 1429 (1622)
T ss_pred             CCCEEEEE
Confidence            46787766

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.76  E-value=4.3e-18  Score=166.21  Aligned_cols=127  Identities=14%  Similarity=0.125  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---CCCCCCCCcccChhhhHh-----------------HHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LEDV   62 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---~~~~~~y~~~~~v~e~i~-----------------~~~~   62 (247)
                      -+++|+||||||||||+++|+|+++|++|++.+++...   -.|+...++. +++|++.                 +.++
T Consensus       479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~  557 (659)
T TIGR00954       479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQI  557 (659)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHH
Confidence            36899999999999999999999999999998754210   0122111222 6666653                 3466


Q ss_pred             HHHcCCCCCCchhh-------hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844           63 MEELGLGPNGGLIY-------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (247)
Q Consensus        63 l~~~~L~~~~~~~~-------~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (247)
                      ++.+++.+......       ....+++|+  +++|||+++.  +|+++||||||+ ||+.+...+. +.+++   .|.+
T Consensus       558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~t  631 (659)
T TIGR00954       558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGIT  631 (659)
T ss_pred             HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCE
Confidence            77778764321110       012456554  4899999999  999999999999 9999887776 55544   4777


Q ss_pred             EEEE
Q 025844          133 VCAV  136 (247)
Q Consensus       133 ii~v  136 (247)
                      ++++
T Consensus       632 vI~i  635 (659)
T TIGR00954       632 LFSV  635 (659)
T ss_pred             EEEE
Confidence            7666

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.75  E-value=2.7e-18  Score=178.92  Aligned_cols=131  Identities=14%  Similarity=0.140  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC----cCCCceEEEeccCCC------CCCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPA------AENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l----~~~~G~v~i~g~d~~------~~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+|+|+|..    +|.+|+|.++|.++.      ...++|       .+.+||+|++.       
T Consensus        88 e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~  167 (1394)
T TIGR00956        88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT  167 (1394)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC
Confidence            468999999999999999999986    568999999997642      112333       23467777653       


Q ss_pred             -----------------HHHHHHHcCCCCCCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844           59 -----------------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (247)
Q Consensus        59 -----------------~~~~l~~~~L~~~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~  115 (247)
                                       .+++++.+||.+..+....   ...+++|+  |+.||++++.  +|+++++||||+ ||+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~~  245 (1394)
T TIGR00956       168 PQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSATA  245 (1394)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHHH
Confidence                             1346777888764322210   12355554  4999999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhC-CCeEEEE
Q 025844          116 VPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus       116 ~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      ..++ +++++++++ |.+++++
T Consensus       246 ~~i~-~~L~~la~~~g~tvii~  266 (1394)
T TIGR00956       246 LEFI-RALKTSANILDTTPLVA  266 (1394)
T ss_pred             HHHH-HHHHHHHHhcCCEEEEE
Confidence            9999 999999764 7777655

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.75  E-value=6.3e-18  Score=176.58  Aligned_cols=129  Identities=16%  Similarity=0.163  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-ccCCCC-------CCCCC-Cc-----ccChhhhHhH---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDY-PV-----AMDIRELISL---------   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~-g~d~~~-------~~~~y-~~-----~~~v~e~i~~---------   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++ |.+...       +.++| +|     +.|+++++..         
T Consensus       412 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~  491 (1466)
T PTZ00265        412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE  491 (1466)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccc
Confidence            3689999999999999999999999999999995 454421       23444 22     2366666643         


Q ss_pred             ----------------------------------------------------------HHHHHHcCCCCC------C---
Q 025844           60 ----------------------------------------------------------EDVMEELGLGPN------G---   72 (247)
Q Consensus        60 ----------------------------------------------------------~~~l~~~~L~~~------~---   72 (247)
                                                                                .++++..++...      +   
T Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT  571 (1466)
T PTZ00265        492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYET  571 (1466)
T ss_pred             hhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCc
Confidence                                                                      223333333211      0   


Q ss_pred             --chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           73 --GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        73 --~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                        +..  ...+++|+  +++||||++.  +|++|||||||+ ||+.+...+. +.++++++ .|.++++|
T Consensus       572 ~vg~~--g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiI  636 (1466)
T PTZ00265        572 LVGSN--ASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIII  636 (1466)
T ss_pred             eeCCC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEE
Confidence              000  12355554  4899999999  999999999999 9999998888 88888864 47777666

>PTZ00243 ABC transporter; Provisional

Probab=99.75  E-value=1.5e-17  Score=174.78  Aligned_cols=129  Identities=18%  Similarity=0.205  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED   61 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~~   61 (247)
                      .++|+|++|||||||+++|.|+++|++|+|.++|.|...       +.++| +|     +-||++|++         +.+
T Consensus      1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~ 1417 (1560)
T PTZ00243       1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWA 1417 (1560)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHH
Confidence            589999999999999999999999999999999988753       33444 22     338888886         556


Q ss_pred             HHHHcCCCCC------Cchhh---hHHhhhhhHH--HHHHHHhhcCCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           62 VMEELGLGPN------GGLIY---CMEHLEDNLD--DWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        62 ~l~~~~L~~~------~~~~~---~~~~l~~~~~--~~la~al~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      +++..++...      |-...   .-..+++|++  .+||||++.  + |++|||||||+ +|..+.+.+. +.+++.. 
T Consensus      1418 Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~- 1493 (1560)
T PTZ00243       1418 ALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSAF- 1493 (1560)
T ss_pred             HHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHC-
Confidence            6776666421      10000   0023555544  899999998  7 89999999999 9999988887 7777653 


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .+.|+|+|
T Consensus      1494 ~~~TvI~I 1501 (1560)
T PTZ00243       1494 SAYTVITI 1501 (1560)
T ss_pred             CCCEEEEE
Confidence            46777666

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.75  E-value=9.5e-18  Score=158.97  Aligned_cols=134  Identities=16%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CCC--CCCC-CCCcccChhhhH----------hHHHHHHHcCCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA--AENF-DYPVAMDIRELI----------SLEDVMEELGLG   69 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~~--~~~~-~y~~~~~v~e~i----------~~~~~l~~~~L~   69 (247)
                      -++|+||||+|||||+|+|+|...|.+|+|.+... ..+  .|+. .+.++.++.+.+          .++..+..+++.
T Consensus       350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~  429 (530)
T COG0488         350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT  429 (530)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999987532 110  0110 111222444433          377889999998


Q ss_pred             CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025844           70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT  145 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~  145 (247)
                      +.... .....+|+|.+  +.+|+.+..  +|.+|||||||+ ||+.+...+- +.+   ..-..++++|. ||-+++.
T Consensus       430 ~~~~~-~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~aL---~~f~Gtvl~VS-HDr~Fl~  500 (530)
T COG0488         430 GEDQE-KPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EAL---LDFEGTVLLVS-HDRYFLD  500 (530)
T ss_pred             hHHHh-CchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HHH---HhCCCeEEEEe-CCHHHHH
Confidence            76542 33467887765  888888888  999999999999 9999986554 444   34344676663 5655544

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.75  E-value=3.8e-18  Score=179.24  Aligned_cols=130  Identities=20%  Similarity=0.154  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~   60 (247)
                      -.+||+||+|||||||+++|.|+++|++|+|.++|.|...       ..+++ +|     +-|+|+|+.         +.
T Consensus      1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957      1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence            3589999999999999999999999999999999988753       33443 22     237888875         45


Q ss_pred             HHHHHcCCCC------CCch--h-hhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGP------NGGL--I-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~------~~~~--~-~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++..++.+      .|-.  + ..-..+++|++  .+||||+++  +|++|||||||+ +|..+...+. +.+++.. 
T Consensus      1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~- 1468 (1522)
T TIGR00957      1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF- 1468 (1522)
T ss_pred             HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence            5666655532      1100  0 00023555544  899999999  999999999999 9999987776 7777653 


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      +++|+++|
T Consensus      1469 ~~~TvI~I 1476 (1522)
T TIGR00957      1469 EDCTVLTI 1476 (1522)
T ss_pred             CCCEEEEE
Confidence            46787766

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.74  E-value=1.7e-17  Score=131.81  Aligned_cols=131  Identities=15%  Similarity=0.115  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCC----CC-CCCC-------CCcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP----AA-ENFD-------YPVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~----~~-~~~~-------y~~~~~v~e~i~---------   58 (247)
                      -++.++||+|||||||+..+.|.+.++   +|++++++.+.    +. ..++       .+|.++|.+++.         
T Consensus        29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG  108 (213)
T COG4136          29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKG  108 (213)
T ss_pred             cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccccc
Confidence            478899999999999999999999774   79999998764    22 1111       144556665542         


Q ss_pred             ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                            +...+++.||...-..-  .+.++++++  +++-|++..  +|+.+++|||++ ||..-+.++.+..+.+++..
T Consensus       109 ~aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a  184 (213)
T COG4136         109 NARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA  184 (213)
T ss_pred             HHHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence                  67889999987654333  256777776  889999999  999999999999 99999999886677788778


Q ss_pred             CCeEEEEE
Q 025844          130 NFNVCAVY  137 (247)
Q Consensus       130 ~~~ii~v~  137 (247)
                      |..++.|.
T Consensus       185 giPtv~VT  192 (213)
T COG4136         185 GIPTVQVT  192 (213)
T ss_pred             CCCeEEEe
Confidence            98887773

>PLN03140 ABC transporter G family member; Provisional

Probab=99.74  E-value=6e-18  Score=176.38  Aligned_cols=131  Identities=15%  Similarity=0.190  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC----CCCCC-------CcccChhhhHhH---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL---------   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~---------   59 (247)
                      -+++|+||||||||||+++|+|.++|+   +|+|.++|.+...    +.++|       .+.+||+|++..         
T Consensus       192 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~  271 (1470)
T PLN03140        192 RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT  271 (1470)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC
Confidence            368999999999999999999999998   9999999976521    22333       234677776531         


Q ss_pred             -----------------------------------------HHHHHHcCCCCCCchhh---hHHhhhhhHH--HHHHHHh
Q 025844           60 -----------------------------------------EDVMEELGLGPNGGLIY---CMEHLEDNLD--DWLAEEL   93 (247)
Q Consensus        60 -----------------------------------------~~~l~~~~L~~~~~~~~---~~~~l~~~~~--~~la~al   93 (247)
                                                               +++++.+||....+...   ....+++|++  +.||+++
T Consensus       272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL  351 (1470)
T PLN03140        272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI  351 (1470)
T ss_pred             cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence                                                     33666778864221100   0124555543  8999999


Q ss_pred             hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        94 ~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                      +.  +|+++++||||+ ||..+..+++ +.++++++ .|.+++++
T Consensus       352 ~~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis  393 (1470)
T PLN03140        352 VG--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMS  393 (1470)
T ss_pred             cC--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence            99  999999999999 9999999999 99999875 47777666

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=3.8e-18  Score=137.92  Aligned_cols=131  Identities=18%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC----C-----------CCCCCCC-Cc------ccChhhhH---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD----P-----------AAENFDY-PV------AMDIRELI---   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d----~-----------~~~~~~y-~~------~~~v~e~i---   57 (247)
                      -|+++=||+||||||++|++.|.+.|++|+|++.-.+    .           ..+.++| .|      ...-.|.+   
T Consensus        38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP  117 (235)
T COG4778          38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP  117 (235)
T ss_pred             cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence            5899999999999999999999999999999986432    1           1133444 11      11111111   


Q ss_pred             -------------hHHHHHHHcCCCCCCchhhhHHhhhh--hHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           58 -------------SLEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        58 -------------~~~~~l~~~~L~~~~~~~~~~~~l~~--~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                   .+.+.+.++++.+......+. .+++  ++++.|||.++.  +-++|+|||||+ ||..++..+. +
T Consensus       118 ll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa-TFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv-e  193 (235)
T COG4778         118 LLARGVPREVARAKAADLLTRLNLPERLWSLAPA-TFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV-E  193 (235)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc-ccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-H
Confidence                         156788888876643333322 3443  345999999999  999999999999 9999999999 9


Q ss_pred             HHHHHHhCCCeEEEEE
Q 025844          122 FVDHLKSRNFNVCAVY  137 (247)
Q Consensus       122 ll~~l~~~~~~ii~v~  137 (247)
                      ++++-+..|..++.++
T Consensus       194 li~e~Ka~GaAlvGIF  209 (235)
T COG4778         194 LIREAKARGAALVGIF  209 (235)
T ss_pred             HHHHHHhcCceEEEee
Confidence            9999888899998886

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.73  E-value=3.5e-17  Score=147.09  Aligned_cols=140  Identities=19%  Similarity=0.164  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCC-CC-------cccChhh------h----HhHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YP-------VAMDIRE------L----ISLEDVME   64 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~-y~-------~~~~v~e------~----i~~~~~l~   64 (247)
                      -++.++|.||||||||++.++|+++|++|+|+++|.+...++.. |.       .+.-..+      .    -.++.+++
T Consensus       350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lq  429 (546)
T COG4615         350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQ  429 (546)
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHH
Confidence            36889999999999999999999999999999999877554321 10       0000000      0    01667777


Q ss_pred             HcCCCCCC---chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025844           65 ELGLGPNG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL  138 (247)
Q Consensus        65 ~~~L~~~~---~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l  138 (247)
                      ++.+...-   +..++.-.++.|++  +++..|++.  +.+++++||-.+ -||.-++.+.+.++-.++++|+||++|. 
T Consensus       430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs-  506 (546)
T COG4615         430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS-  506 (546)
T ss_pred             HHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-
Confidence            77664321   11122335666765  666667888  999999999999 9999999999888899988999998885 


Q ss_pred             ccccccc
Q 025844          139 LDSQFIT  145 (247)
Q Consensus       139 ~d~~~~~  145 (247)
                      ||.|+..
T Consensus       507 HDd~YF~  513 (546)
T COG4615         507 HDDHYFI  513 (546)
T ss_pred             cCchhhh
Confidence            6766643

>PLN03073 ABC transporter F family; Provisional

Probab=99.72  E-value=1.5e-16  Score=156.23  Aligned_cols=138  Identities=14%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC---cCCCceEEEeccCCCCCC---------------------CCC-Ccc--------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAEN---------------------FDY-PVA--------   50 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l---~~~~G~v~i~g~d~~~~~---------------------~~y-~~~--------   50 (247)
                      .++|+||||||||||+|+|+|..   .|.+|+|.+.++.+....                     ..+ .+.        
T Consensus       205 ~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~  284 (718)
T PLN03073        205 HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETE  284 (718)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            68999999999999999999864   578899987665421111                     000 000        


Q ss_pred             -----------cC---hhhhH-----------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCC
Q 025844           51 -----------MD---IRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYL   97 (247)
Q Consensus        51 -----------~~---v~e~i-----------------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~   97 (247)
                                 .+   +.+.+                 .+.++++.+|+.+.. .......+++|++  ++||++++.  
T Consensus       285 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~~--  361 (718)
T PLN03073        285 TGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALFI--  361 (718)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHhc--
Confidence                       00   00000                 134455566664221 1112356777654  899999999  


Q ss_pred             CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844           98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus        98 ~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +|++|||||||+ ||+.+...+. ++++.+   +.++++|    +|.......+++
T Consensus       362 ~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiv----sHd~~~l~~~~d  409 (718)
T PLN03073        362 EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVV----SHAREFLNTVVT  409 (718)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEE----ECCHHHHHHhCC
Confidence            999999999999 9999988777 666665   5677665    354444444444

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.71  E-value=3.2e-17  Score=137.55  Aligned_cols=126  Identities=12%  Similarity=0.098  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCC---------ceEEEeccCCCC----CCCCC-CcccC----hhhhHhHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMD----IRELISLEDVMEE   65 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~---------G~v~i~g~d~~~----~~~~y-~~~~~----v~e~i~~~~~l~~   65 (247)
                      +++|+||||||||||+++|+|++++..         |++.+.|.++..    ..++| +|+.+    ....-.++++++.
T Consensus        24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~  103 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA  103 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence            678999999999999999999986652         356666655321    12223 22111    1111235666666


Q ss_pred             cCCCCCCchhhhHHhhhhhHH--HHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                         ......  ....++.+++  +++|++++.  ..+|+++++|||++ +|+.....+. ++++++++ +.+++++
T Consensus       104 ---~~~~~~--~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIii  172 (197)
T cd03278         104 ---PGKKVQ--RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVI  172 (197)
T ss_pred             ---CCcccc--chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence               221111  2345666643  888888762  11679999999999 9999999998 88888854 5666555

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.70  E-value=2.6e-17  Score=172.64  Aligned_cols=128  Identities=23%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED   61 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~~   61 (247)
                      .++|+|++|||||||+++|.|+++ .+|+|.++|.|...       +.+.| +|     +-|+|+|++         +.+
T Consensus      1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271      1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence            589999999999999999999997 79999999988743       33444 22     238898885         566


Q ss_pred             HHHHcCCCCCC-----chhhhH----HhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           62 VMEELGLGPNG-----GLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        62 ~l~~~~L~~~~-----~~~~~~----~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                      +++..++...-     ++-...    ..+++|++  .+||||++.  +|++|||||||+ +|..+...+. +.+++.. .
T Consensus      1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~-~ 1401 (1490)
T TIGR01271      1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSF-S 1401 (1490)
T ss_pred             HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C
Confidence            77777763210     000000    12455544  899999999  999999999999 9999988877 7777653 4


Q ss_pred             CCeEEEE
Q 025844          130 NFNVCAV  136 (247)
Q Consensus       130 ~~~ii~v  136 (247)
                      ++|+++|
T Consensus      1402 ~~TvI~I 1408 (1490)
T TIGR01271      1402 NCTVILS 1408 (1490)
T ss_pred             CCEEEEE
Confidence            6788766

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.70  E-value=8.7e-17  Score=168.71  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCCC---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLG---   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~---   69 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.- ...+. ++..+.|++|++.         .+++++..++.   
T Consensus       453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l  531 (1490)
T TIGR01271       453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT-SWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI  531 (1490)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCC-CccCCccHHHHHHhccccchHHHHHHHHHHhHHHHH
Confidence            3689999999999999999999999999999998721 01122 2222347888875         23344433321   


Q ss_pred             ---CCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           70 ---PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        70 ---~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                         |.+...   .....+++|+  +++||||+..  +|+++|||||++ ||+.+.+.+++.++..+. ++.+++++
T Consensus       532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilv  604 (1490)
T TIGR01271       532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILV  604 (1490)
T ss_pred             HhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEE
Confidence               111110   0012355554  4999999999  999999999999 999999999955666664 46777666

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.70  E-value=4.2e-17  Score=141.51  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=85.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEecc-CC---C------C-------CCC---------CCCcccChhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DP---A------A-------ENF---------DYPVAMDIRE   55 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~-d~---~------~-------~~~---------~y~~~~~v~e   55 (247)
                      -+.+|+|||||||||++++|++++.+. .|++++.+. +.   .      .       ++.         ...+.++|.+
T Consensus        26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r  105 (251)
T cd03273          26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR  105 (251)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence            357999999999999999999998875 456666543 11   0      0       000         0011112111


Q ss_pred             ------------------hHhHHHHHHHcCCCCCCc------------------hhhhHHhhhhhHH--HHHHHHhh---
Q 025844           56 ------------------LISLEDVMEELGLGPNGG------------------LIYCMEHLEDNLD--DWLAEELD---   94 (247)
Q Consensus        56 ------------------~i~~~~~l~~~~L~~~~~------------------~~~~~~~l~~~~~--~~la~al~---   94 (247)
                                        .-.+.++++.+++.....                  .......++.+++  +++|++++   
T Consensus       106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~  185 (251)
T cd03273         106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL  185 (251)
T ss_pred             EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence                              113677889999873210                  0011234555543  78888886   


Q ss_pred             -cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           95 -NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        95 -~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                       .  +|+++|+||||+ ||+.....+. ++++++. .|.+++++
T Consensus       186 ~~--~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~i  225 (251)
T cd03273         186 FK--PAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVV  225 (251)
T ss_pred             cc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence             5  789999999999 9999999988 8888874 47666655

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.70  E-value=2.6e-16  Score=135.48  Aligned_cols=130  Identities=16%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH----------------hCCcCCCc--------eEEEeccCCC----CC------CCCC-
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDPA----AE------NFDY-   47 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~----------------g~l~~~~G--------~v~i~g~d~~----~~------~~~y-   47 (247)
                      -+++|+||||||||||+++|+                +++.+.+|        ++.+.|.+..    .+      .++| 
T Consensus        24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~  103 (243)
T cd03272          24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK  103 (243)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence            368999999999999999998                44555555        5555553211    11      1222 


Q ss_pred             Cc-------ccChhhhHhHHHHHHHcCCCCCCc------------------hhhhHHhhhhhH--HHHHHHHhhc--CCC
Q 025844           48 PV-------AMDIRELISLEDVMEELGLGPNGG------------------LIYCMEHLEDNL--DDWLAEELDN--YLD   98 (247)
Q Consensus        48 ~~-------~~~v~e~i~~~~~l~~~~L~~~~~------------------~~~~~~~l~~~~--~~~la~al~~--~~~   98 (247)
                      ++       ..+..+   +...++.+++.+...                  .......+++++  ++.||++++.  ..+
T Consensus       104 ~~~~~l~~~~~t~~e---i~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~  180 (243)
T cd03272         104 KDEYFLDKKNVTKND---VMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP  180 (243)
T ss_pred             CCEEEECCeEcCHHH---HHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence            11       122222   445666666654210                  001123455554  3889999962  116


Q ss_pred             CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844           99 DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        99 p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      |+++|+|||++ +|+.+.+.+. +.++++++ +.++++++
T Consensus       181 ~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~  218 (243)
T cd03272         181 APFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTT  218 (243)
T ss_pred             CCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence            89999999999 9999999988 78888755 66665554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.67  E-value=3.5e-16  Score=164.53  Aligned_cols=130  Identities=20%  Similarity=0.252  Sum_probs=88.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-CCCCCCCCcccChhhhHh---------HHHHHHHcC-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELG-----   67 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~~~~~~y~~~~~v~e~i~---------~~~~l~~~~-----   67 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.-. ..|+ ++..+.|++|++.         .+++++..+     
T Consensus       665 ~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l  743 (1522)
T TIGR00957       665 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL  743 (1522)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCC-ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence            36899999999999999999999999999999876210 1122 2223457888875         233444332     


Q ss_pred             -CCCCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH--HHHhCCCeEEEE
Q 025844           68 -LGPNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD--HLKSRNFNVCAV  136 (247)
Q Consensus        68 -L~~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~--~l~~~~~~ii~v  136 (247)
                       .-|.|...   ..-..+++|+  |++||||+..  +|+++|||||++ ||+.+.+.+++.++.  .+ ..+.+++++
T Consensus       744 ~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlv  818 (1522)
T TIGR00957       744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILV  818 (1522)
T ss_pred             HhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEE
Confidence             22322110   0012456655  4999999999  999999999999 999999999844442  22 246777666

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.67  E-value=5.5e-16  Score=132.68  Aligned_cols=72  Identities=17%  Similarity=0.126  Sum_probs=55.1

Q ss_pred             HHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844           60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (247)
Q Consensus        60 ~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (247)
                      .+.++.+++.+. .....  ..++.++  ++.||++++.  +|  +++|+||||+ ||+.++..+. ++++++++.|.++
T Consensus       118 ~~~l~~~~l~~~~~~~~~--~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~ti  192 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSA--PTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTV  192 (226)
T ss_pred             HHHHHHCCCCcccccCcc--CcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence            457778888652 22222  3455554  4899999998  87  5999999999 9999999998 8888887678887


Q ss_pred             EEE
Q 025844          134 CAV  136 (247)
Q Consensus       134 i~v  136 (247)
                      +++
T Consensus       193 i~i  195 (226)
T cd03270         193 LVV  195 (226)
T ss_pred             EEE
Confidence            766

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.66  E-value=7.1e-16  Score=125.38  Aligned_cols=130  Identities=17%  Similarity=0.194  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------------CCCCC-Cc--------c----cCh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY-PV--------A----MDI   53 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------------~~~~y-~~--------~----~~v   53 (247)
                      -+.+|+|++|||||||+++|++.+.|+.|+|.+...+-..                .+.++ .+        .    -+|
T Consensus        33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni  112 (258)
T COG4107          33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI  112 (258)
T ss_pred             cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence            4689999999999999999999999999999997633211                11111 00        0    012


Q ss_pred             hhh-----------H--hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844           54 REL-----------I--SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (247)
Q Consensus        54 ~e~-----------i--~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~  117 (247)
                      .|-           +  ...+|++++.+.+..-.-.+ ..++++++  ..|||-+..  .|+++++||||. ||...+..
T Consensus       113 GERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~P-rtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQAR  189 (258)
T COG4107         113 GERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR  189 (258)
T ss_pred             chhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcc-cccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhHHH
Confidence            111           1  16789999998875422211 24566654  889999999  999999999999 99999999


Q ss_pred             HHHHHHHHHHh-CCCeEEEE
Q 025844          118 VLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus       118 ~~~~ll~~l~~-~~~~ii~v  136 (247)
                      ++ ++++.|.. .+..+++|
T Consensus       190 LL-DllrgLv~~l~la~viV  208 (258)
T COG4107         190 LL-DLLRGLVRELGLAVVIV  208 (258)
T ss_pred             HH-HHHHHHHHhcCceEEEE
Confidence            98 99999865 47777666

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.66  E-value=4.2e-16  Score=156.42  Aligned_cols=154  Identities=20%  Similarity=0.194  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhHh-------HHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS-------LEDV   62 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y---~~---~~~v~e~i~-------~~~~   62 (247)
                      ..++++||+||||||...+|-.++.|++|.|.++|.|...       ++++.   .|   +-||+||+.       .+|+
T Consensus      1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence            3589999999999999999999999999999999988754       22222   12   447888875       2333


Q ss_pred             HHHcCC---C------CCCchhhh---HHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           63 MEELGL---G------PNGGLIYC---MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        63 l~~~~L---~------~~~~~~~~---~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      ++...+   .      |+|-....   --.+++|  +|.+||||+.+  +|++|||||-|+ ||..+.+.+- +.+++..
T Consensus      1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQ-eALd~a~ 1173 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQ-EALDRAM 1173 (1228)
T ss_pred             HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHH-HHHHHhh
Confidence            332211   1      11111000   0134554  45999999999  999999999999 9999877665 8888875


Q ss_pred             hCCCeEEEE-EecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          128 SRNFNVCAV-YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       128 ~~~~~ii~v-~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                       .|.|.++| |-+++..-                     .-.|.|+.+....++.
T Consensus      1174 -~gRT~IvIAHRLSTIqn---------------------aD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1174 -EGRTTIVIAHRLSTIQN---------------------ADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred             -cCCcEEEEecchhhhhc---------------------CCEEEEEECCEEEecc
Confidence             45555444 43332221                     1256788888777766

>PLN03130 ABC transporter C family member; Provisional

Probab=99.66  E-value=3.9e-16  Score=164.61  Aligned_cols=130  Identities=15%  Similarity=0.197  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeccCCCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC---
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP---   70 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~v~i~g~d~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~---   70 (247)
                      .++|+||+|||||||+++|.|.++|.+ |+|.+.+.---...-++-.+-|++||+.         ++++++..++.+   
T Consensus       645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~  724 (1622)
T PLN03130        645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD  724 (1622)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence            589999999999999999999999999 8998754211111123334568999886         555666555422   


Q ss_pred             ---CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           71 ---NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ---~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                         .|....   .-..+++|+  |++||||+..  +|+++|||||++ ||..+.+.++++.++.+. .++|+|+|
T Consensus       725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlV  796 (1622)
T PLN03130        725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLV  796 (1622)
T ss_pred             hCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEE
Confidence               111110   002356655  4899999999  999999999999 999998888767776653 46676655

>PLN03232 ABC transporter C family member; Provisional

Probab=99.66  E-value=6.2e-16  Score=162.47  Aligned_cols=130  Identities=14%  Similarity=0.170  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-CCCCCCCcccChhhhHh---------HHHHHHHcCCCC---
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS---------LEDVMEELGLGP---   70 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~---   70 (247)
                      .++|+||+|||||||+++|.|.++|++|.+.......+ ...-++-.+-|++||+.         ++++++..++.+   
T Consensus       645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~  724 (1495)
T PLN03232        645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLD  724 (1495)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHH
Confidence            58999999999999999999999999886543221111 01112333558888886         556666655422   


Q ss_pred             ---CCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           71 ---NGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ---~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                         .|....-   -..+++|+  |++||||+..  +|+++|||||++ ||..+.+.+++++++.+. .++|+|+|
T Consensus       725 ~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~Ilv  796 (1495)
T PLN03232        725 LLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLV  796 (1495)
T ss_pred             hCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEE
Confidence               2111000   02356655  4999999999  999999999999 999999888866676543 45666655

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2e-16  Score=146.02  Aligned_cols=131  Identities=21%  Similarity=0.236  Sum_probs=82.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-------ccCCCCCCCCCCcccChhhhHh-------------HHH-HH
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELIS-------------LED-VM   63 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~-------g~d~~~~~~~y~~~~~v~e~i~-------------~~~-~l   63 (247)
                      +|++||||+|||||+|+|+.      |.|...       |-+.....-....++.+.+++.             +.. ++
T Consensus       109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L  182 (582)
T KOG0062|consen  109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL  182 (582)
T ss_pred             cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence            58999999999999999997      222221       1111000000011222222221             222 66


Q ss_pred             HHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025844           64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD  140 (247)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d  140 (247)
                      ..+|+.+..... +...+++|++  .+||||+..  +||+|+|||||+ ||..+...+- .   .|...+.|+++|. ||
T Consensus       183 ~glGFt~emq~~-pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~WLe-~---yL~t~~~T~liVS-HD  254 (582)
T KOG0062|consen  183 AGLGFTPEMQLQ-PTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAWLE-N---YLQTWKITSLIVS-HD  254 (582)
T ss_pred             HhCCCCHHHHhc-cccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHHHH-H---HHhhCCceEEEEe-cc
Confidence            678887754332 2457888765  899999999  999999999999 9998764333 3   3444456776664 78


Q ss_pred             cccccchhH
Q 025844          141 SQFITDVTK  149 (247)
Q Consensus       141 ~~~~~d~~~  149 (247)
                      ..|+.....
T Consensus       255 r~FLn~V~t  263 (582)
T KOG0062|consen  255 RNFLNTVCT  263 (582)
T ss_pred             HHHHHHHHH
Confidence            887765544

>PTZ00243 ABC transporter; Provisional

Probab=99.65  E-value=5.5e-16  Score=163.10  Aligned_cols=128  Identities=20%  Similarity=0.159  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHc------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEEL------   66 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~------   66 (247)
                      -+++|+||||||||||+++|+|.++|++|+|.+.+.- ...|. ++..+.|++|++.         ++++++..      
T Consensus       687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~-~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l  765 (1560)
T PTZ00243        687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ-AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADL  765 (1560)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCC-CccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHH
Confidence            3689999999999999999999999999999874210 00111 1112457887774         22233322      


Q ss_pred             -----CCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           67 -----GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        67 -----~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                           |+....+..  ...+++|++  ++||||+..  +|+++|||||++ ||+.+...+++.++.... .|.+++++
T Consensus       766 ~~l~~g~~t~i~~~--g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlv  838 (1560)
T PTZ00243        766 AQLGGGLETEIGEK--GVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLA  838 (1560)
T ss_pred             HHhhccchHHhcCC--CCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence                 222111111  134566554  899999999  999999999999 999998888755554432 46777666

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.64  E-value=2.4e-15  Score=126.88  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH----hCCcCCCceEEEec----cCCCCCCCCC------------CcccChhhhHh---HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVN----LDPAAENFDY------------PVAMDIRELIS---LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~----g~l~~~~G~v~i~g----~d~~~~~~~y------------~~~~~v~e~i~---~~   60 (247)
                      +++|+||||||||||+++|.    |...+..|.+....    .......+.+            ...+++.+++.   -.
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~  103 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG  103 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence            78999999999999999995    88888777554111    1111111111            11124444331   01


Q ss_pred             HHHHHcCCCCCCchhhhHHhhhhhHH--------HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH-HHHHHHHHHHHhC-
Q 025844           61 DVMEELGLGPNGGLIYCMEHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR-  129 (247)
Q Consensus        61 ~~l~~~~L~~~~~~~~~~~~l~~~~~--------~~la~al~~~~~p~~lilDEPt~-LD~~~~~-~~~~~ll~~l~~~-  129 (247)
                      ++-+.+.-.        ...++.+++        ++++++++.  +|+++++|||++ ||+..+. .+. ++++++++. 
T Consensus       104 ~~~~~~~~~--------~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~  172 (204)
T cd03240         104 ESNWPLLDM--------RGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQK  172 (204)
T ss_pred             HHHHHHhcC--------ccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhcc
Confidence            111111000        123344332        467888888  999999999999 9999998 777 888888665 


Q ss_pred             CCeEEEE
Q 025844          130 NFNVCAV  136 (247)
Q Consensus       130 ~~~ii~v  136 (247)
                      +.+++++
T Consensus       173 ~~~iiii  179 (204)
T cd03240         173 NFQLIVI  179 (204)
T ss_pred             CCEEEEE
Confidence            6677665

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.64  E-value=2.4e-15  Score=135.76  Aligned_cols=157  Identities=17%  Similarity=0.248  Sum_probs=115.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC-----------CCCC---------CCcccChhhhH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFD---------YPVAMDIRELI   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~-----------~~~~---------y~~~~~v~e~i   57 (247)
                      -.++++|.+|||||-..+.+.|+++.     -+|+|.+.|.|.-.           ..+.         ..|-.+|...+
T Consensus        37 EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi  116 (534)
T COG4172          37 ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL  116 (534)
T ss_pred             CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHH
Confidence            36899999999999999999999975     36899999987521           1111         12333554444


Q ss_pred             h-----------------HHHHHHHcCCCCCCchhh-hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844           58 S-----------------LEDVMEELGLGPNGGLIY-CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (247)
Q Consensus        58 ~-----------------~~~~l~~~~L~~~~~~~~-~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~  116 (247)
                      .                 +.++++.+|+.....+.. --+.+++|++  +.||.|++.  +|++||.||||. ||...+.
T Consensus       117 ~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtvQa  194 (534)
T COG4172         117 AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTVQA  194 (534)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhhHH
Confidence            2                 677888999875433221 1245666654  899999999  999999999998 9999999


Q ss_pred             HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      +++ ++++.|++ .|+.++++    +|.+.-...|.+               .+.|+.+.+.++..
T Consensus       195 QIL-~Ll~~Lq~~~gMa~lfI----THDL~iVr~~AD---------------rV~VM~~G~ivE~~  240 (534)
T COG4172         195 QIL-DLLKELQAELGMAILFI----THDLGIVRKFAD---------------RVYVMQHGEIVETG  240 (534)
T ss_pred             HHH-HHHHHHHHHhCcEEEEE----eccHHHHHHhhh---------------hEEEEeccEEeecC
Confidence            999 99999975 48888766    366554555555               56788888887765

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.64  E-value=5.4e-16  Score=131.47  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEec----cCCC--CCCCCC-------------CcccChhhhHhHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVN----LDPA--AENFDY-------------PVAMDIRELISLEDVM   63 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v~i~g----~d~~--~~~~~y-------------~~~~~v~e~i~~~~~l   63 (247)
                      +++|+|||||||||++++|++.+ .+..+......    ....  ...+.+             ...++..+..... .+
T Consensus        30 ~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~-~l  108 (213)
T cd03279          30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV-LL  108 (213)
T ss_pred             EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-hh
Confidence            78999999999999999999543 33333333210    0000  001111             0111222111100 12


Q ss_pred             HHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcC--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844           64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (247)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (247)
                      +..++.+.....  ...++.++  ++.+|++++..        .+|+++|+|||++ +|+.+...+. ++++++++++.+
T Consensus       109 ~~g~l~~~l~~~--~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~t  185 (213)
T cd03279         109 PQGEFDRFLARP--VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRM  185 (213)
T ss_pred             hhcchHHHhcCC--ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCE
Confidence            222232221111  12345443  38889999741        1578999999999 9999999988 888888766778


Q ss_pred             EEEE
Q 025844          133 VCAV  136 (247)
Q Consensus       133 ii~v  136 (247)
                      ++++
T Consensus       186 ii~i  189 (213)
T cd03279         186 VGVI  189 (213)
T ss_pred             EEEE
Confidence            7666

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.63  E-value=9.1e-16  Score=132.94  Aligned_cols=133  Identities=17%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-------C-----CC---------CC--------------CCCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AA---------EN--------------FDYP   48 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-------~-----~~---------~~--------------~~y~   48 (247)
                      +++|+|||||||||++.+|++.+.+..|++...+.+       .     ..         +.              ..|.
T Consensus        24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~  103 (247)
T cd03275          24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR  103 (247)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence            578999999999999999999987766655443211       0     00         00              0000


Q ss_pred             cccChhhhHhHHHHHHHcCCCCCCc--------------------hhhhHHhhhhhHH--HHHHHHhhc--CCCCCEEEE
Q 025844           49 VAMDIRELISLEDVMEELGLGPNGG--------------------LIYCMEHLEDNLD--DWLAEELDN--YLDDDYLVF  104 (247)
Q Consensus        49 ~~~~v~e~i~~~~~l~~~~L~~~~~--------------------~~~~~~~l~~~~~--~~la~al~~--~~~p~~lil  104 (247)
                      .+-.....-.++++++.+|+.+...                    .......++.+++  +.||++++.  ..+|+++|+
T Consensus       104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll  183 (247)
T cd03275         104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL  183 (247)
T ss_pred             ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            0000000112568888888864311                    1111234555543  888998875  014899999


Q ss_pred             eCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844          105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus       105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      |||++ ||+..+..+. +++++++++|.+++++.
T Consensus       184 DEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~is  216 (247)
T cd03275         184 DEVDAALDNTNVGKVA-SYIREQAGPNFQFIVIS  216 (247)
T ss_pred             ecccccCCHHHHHHHH-HHHHHhccCCcEEEEEE
Confidence            99999 9999999988 88888876677777663

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.63  E-value=1.1e-15  Score=139.54  Aligned_cols=131  Identities=15%  Similarity=0.191  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC--CCCCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAENFDYPVAMDIRELIS------------LEDVMEELGL   68 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d--~~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L   68 (247)
                      -+++++||||-|||||+++|+|.++|++|.  ..+..  ...|.+.-..+.||++.+.            -.|+++-+++
T Consensus       368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l  445 (591)
T COG1245         368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL  445 (591)
T ss_pred             eEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence            478999999999999999999999999997  11111  1223333233557777664            2445555555


Q ss_pred             CCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEeccc
Q 025844           69 GPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDS  141 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~  141 (247)
                      .+...+.  ...+++|  +++++|.+|..  ++++.++|||.+ ||...+..+. +.|++...+ +.+.++| -||.
T Consensus       446 ~~i~e~~--v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vV-dHDi  516 (591)
T COG1245         446 EDLLERP--VDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVV-DHDI  516 (591)
T ss_pred             HHHHhcc--cccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEE-ecce
Confidence            5432222  2234443  45999999999  999999999999 9999887777 888887654 5555444 3443

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.62  E-value=1.3e-15  Score=141.45  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-C--CCC----CCCCc--------cc-ChhhhHhHHHHHHHcCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AEN----FDYPV--------AM-DIRELISLEDVMEELGL   68 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~--~~~----~~y~~--------~~-~v~e~i~~~~~l~~~~L   68 (247)
                      +++|||||+|||||+|+++|.+.|..|.|.-..... +  .++    .+|..        .. +..+.-.++.++.++||
T Consensus       419 vAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgL  498 (614)
T KOG0927|consen  419 VALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGL  498 (614)
T ss_pred             eeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCC
Confidence            689999999999999999999999999987543221 1  111    11100        00 12222337789999999


Q ss_pred             CCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .... +...+..++.|++  +.+|+.+..  +|.+|+|||||+ ||..+...+. +.++++   ..+++.|
T Consensus       499 tgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-eaiNe~---~Ggvv~v  562 (614)
T KOG0927|consen  499 TGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-EAINEF---PGGVVLV  562 (614)
T ss_pred             Cccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-HHHhcc---CCceeee
Confidence            8653 3334677888765  888988888  999999999999 9999876655 555443   3345555

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.61  E-value=2.7e-16  Score=133.46  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=48.4

Q ss_pred             HHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        60 ~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                      .++.+.+++.......  ...++.++  ++.+|++++.  ..+|+++++|||++ +|+.++..+. +.++++++ +.+++
T Consensus       109 ~~~~~~~~L~~~~~~~--~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~-~~~~i  184 (212)
T cd03274         109 GEVEQIAQMPKKSWKN--ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTK-NAQFI  184 (212)
T ss_pred             CcEEEeeccccccccc--hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcC-CCEEE
Confidence            4455566664332222  23455554  3888988863  11589999999999 9999999888 88888854 44544


Q ss_pred             EE
Q 025844          135 AV  136 (247)
Q Consensus       135 ~v  136 (247)
                      ++
T Consensus       185 iv  186 (212)
T cd03274         185 VI  186 (212)
T ss_pred             EE
Confidence            44

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.61  E-value=1.5e-15  Score=123.59  Aligned_cols=129  Identities=19%  Similarity=0.290  Sum_probs=91.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh-----------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      +.-+|||||||||||+-.++|+++. +|+|.+.|.+...       +.-+|       +..+.|..+++           
T Consensus        27 ~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~  105 (248)
T COG4138          27 ILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTEL  105 (248)
T ss_pred             EEEEECCCCccHHHHHHHHhCCCCC-CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHH
Confidence            5668999999999999999999765 7999999987632       01111       11233444443           


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcC---CCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNY---LDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~---~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                      +.++...+++++...+.  .+.+++|  +++.+|....+.   .+|  +++|+|||.+ ||......+- +++.++.+.|
T Consensus       106 i~~i~~~L~l~DKL~Rs--~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~~c~~G  182 (248)
T COG4138         106 LNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSALCQQG  182 (248)
T ss_pred             HHHHHhhhcccchhhhh--hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHHHHhCC
Confidence            67788888888765544  4556655  335566554433   133  6899999999 9998776665 9999999999


Q ss_pred             CeEEEE
Q 025844          131 FNVCAV  136 (247)
Q Consensus       131 ~~ii~v  136 (247)
                      .+||+.
T Consensus       183 ~~vims  188 (248)
T COG4138         183 LAIVMS  188 (248)
T ss_pred             cEEEEe
Confidence            999765

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.60  E-value=7e-15  Score=128.39  Aligned_cols=73  Identities=19%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844           59 LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (247)
Q Consensus        59 ~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (247)
                      ..++++.+||+. ..++.  ...++++.  ++.||++++.  +   |+++||||||+ ||+.....+. ++++++.+.|.
T Consensus       149 ~~~~L~~vgL~~l~l~~~--~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~  223 (261)
T cd03271         149 KLQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGN  223 (261)
T ss_pred             HHHHHHHcCCchhhhcCc--cccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence            456777889876 22332  23455554  4899999998  6   79999999999 9999999998 88898877788


Q ss_pred             eEEEE
Q 025844          132 NVCAV  136 (247)
Q Consensus       132 ~ii~v  136 (247)
                      +++++
T Consensus       224 tvIii  228 (261)
T cd03271         224 TVVVI  228 (261)
T ss_pred             EEEEE
Confidence            88766

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.59  E-value=8.7e-15  Score=134.74  Aligned_cols=151  Identities=17%  Similarity=0.192  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~----------~   59 (247)
                      -.++++||+|+||||++|.+..+...++|.|.++|+|+.+       +.++. ||+     -|+..++.          +
T Consensus       565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev  644 (790)
T KOG0056|consen  565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV  644 (790)
T ss_pred             cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence            4689999999999999999999999999999999999753       23333 222     13333332          1


Q ss_pred             HHHHHH-------cCC--------CCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           60 EDVMEE-------LGL--------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        60 ~~~l~~-------~~L--------~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                      .+..+.       +++        |..| ++   -...+++++++||++..  .|.+++|||.|+ ||..+.+.+. ..+
T Consensus       645 yaAAkAA~IHdrIl~fPegY~t~VGERG-Lk---LSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ-aaL  717 (790)
T KOG0056|consen  645 YAAAKAAQIHDRILQFPEGYNTRVGERG-LK---LSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ-AAL  717 (790)
T ss_pred             HHHHHHhhHHHHHhcCchhhhhhhhhcc-cc---cCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-HHH
Confidence            111111       111        1111 11   01223467999999999  999999999999 9999998887 888


Q ss_pred             HHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      .++.+...+|++.|-+++..-+                     -.|-|+++.-++++.
T Consensus       718 ~rlca~RTtIVvAHRLSTivnA---------------------D~ILvi~~G~IvErG  754 (790)
T KOG0056|consen  718 ARLCANRTTIVVAHRLSTIVNA---------------------DLILVISNGRIVERG  754 (790)
T ss_pred             HHHhcCCceEEEeeeehheecc---------------------cEEEEEeCCeEeecC
Confidence            8887766667666654433221                     155677777777655

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=1.2e-15  Score=153.49  Aligned_cols=131  Identities=18%  Similarity=0.262  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeccCCCC----CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      ...+++|++|||||||+++|+|-..  ..+|+|.++|.+..+    +..+|       .+.+||||.+.           
T Consensus       818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v  897 (1391)
T KOG0065|consen  818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV  897 (1391)
T ss_pred             ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence            3579999999999999999999643  346899999976542    23444       23568888774           


Q ss_pred             --------HHHHHHHcCCCCCCchhhhH--HhhhhhHH--HHHHHHhhcCCCC-CEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 --------LEDVMEELGLGPNGGLIYCM--EHLEDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~--~~l~~~~~--~~la~al~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                              ++++++.++|.+........  .-++-.+|  +.||-.|+.  +| .+|+|||||+ ||..+...++ ++++
T Consensus       898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~-~~lr  974 (1391)
T KOG0065|consen  898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVM-RFLR  974 (1391)
T ss_pred             CHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHH-HHHH
Confidence                    88999999998754433221  01222232  667777777  99 8999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE
Q 025844          125 HLKSRNFNVCAV  136 (247)
Q Consensus       125 ~l~~~~~~ii~v  136 (247)
                      ++...|.+|++.
T Consensus       975 kla~tGqtIlCT  986 (1391)
T KOG0065|consen  975 KLADTGQTILCT  986 (1391)
T ss_pred             HHHhcCCeEEEE
Confidence            999899998765

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.56  E-value=7.7e-15  Score=134.07  Aligned_cols=126  Identities=22%  Similarity=0.260  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------------------CCCCCCc---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------------------ENFDYPV---   49 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------------------~~~~y~~---   49 (247)
                      .+++|+||||-||||-+|+|+|.+.|.=|+..  + +|..                              |.+.+-|   
T Consensus       101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~-pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~  177 (591)
T COG1245         101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE--D-PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV  177 (591)
T ss_pred             cEEEEEcCCCccHHHHHHHHhCccccCCCCCC--C-CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence            57999999999999999999999999877542  1 1110                              1111111   


Q ss_pred             ccChhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        50 ~~~v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                      .=++.+.+.       .++++++++|....++-  .+.+++|  ++++||.++++  ++++++||||++ ||...+-...
T Consensus       178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~--v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~a  253 (591)
T COG1245         178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRD--VSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNAA  253 (591)
T ss_pred             cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh--hhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHHH
Confidence            114555554       78899999998765544  3456654  45899999999  999999999999 9999998888


Q ss_pred             HHHHHHHHhCCCeEEEE
Q 025844          120 RNFVDHLKSRNFNVCAV  136 (247)
Q Consensus       120 ~~ll~~l~~~~~~ii~v  136 (247)
                       +++++|.+.++.|++|
T Consensus       254 -r~Irel~~~~k~ViVV  269 (591)
T COG1245         254 -RVIRELAEDGKYVIVV  269 (591)
T ss_pred             -HHHHHHhccCCeEEEE
Confidence             9999998777888777

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.55  E-value=1.6e-14  Score=121.47  Aligned_cols=116  Identities=12%  Similarity=0.080  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      +++|+||||||||||+|+++|.... ..|. .+.......+.....+.+++.|++..       +++..      .... 
T Consensus        27 ~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~~~~~q~~~l~~~~~~~d~l~~-------~~s~~------~~e~-   91 (199)
T cd03283          27 GILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCASSFELPPVKIFTSIRVSDDLRD-------GISYF------YAEL-   91 (199)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecCccCcccceEEEeccchhcccc-------ccChH------HHHH-
Confidence            6789999999999999999986531 1222 11111111111011234455554422       22111      0111 


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ...+..+.+.=..  +|+++|+|||++ +|+.....+...+++.+.+.+.+++++
T Consensus        92 ~~~~~iL~~~~~~--~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv  144 (199)
T cd03283          92 RRLKEIVEKAKKG--EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS  144 (199)
T ss_pred             HHHHHHHHhccCC--CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            1121112211113  899999999999 999988877646788887667776555

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=1.2e-14  Score=148.53  Aligned_cols=129  Identities=18%  Similarity=0.210  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh---------HHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED   61 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~---------~~~   61 (247)
                      -+||+|+.|||||||.++|..+..|.+|+|.++|.|+..       ..+.. ||+     =|+|.|++         +=+
T Consensus      1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ 1247 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWE 1247 (1381)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHH
Confidence            489999999999999999999999999999999988753       12222 221     14555553         333


Q ss_pred             HHHHcCCCC---------CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           62 VMEELGLGP---------NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        62 ~l~~~~L~~---------~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                      ++++.+|.+         .......-+.++-|+|  +.||||+.+  ++++|++||.|+ +|+.+-.-+. +.+++-= .
T Consensus      1248 ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ-~tIR~~F-~ 1323 (1381)
T KOG0054|consen 1248 ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREEF-K 1323 (1381)
T ss_pred             HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHH-HHHHHHh-c
Confidence            444433321         1000000123444454  899999999  999999999999 9999865544 6666532 3


Q ss_pred             CCeEEEE
Q 025844          130 NFNVCAV  136 (247)
Q Consensus       130 ~~~ii~v  136 (247)
                      +.||+.+
T Consensus      1324 dcTVltI 1330 (1381)
T KOG0054|consen 1324 DCTVLTI 1330 (1381)
T ss_pred             CCeEEEE
Confidence            6888766

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=4.8e-14  Score=127.85  Aligned_cols=133  Identities=16%  Similarity=0.153  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~----------~   59 (247)
                      -.++++||+|+||||+++.+..++.+++|.|.++|+|...       .-++. ||+     -++..++.          +
T Consensus       290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev  369 (497)
T COG5265         290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV  369 (497)
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence            3589999999999999999999999999999999988632       11111 111     12222222          1


Q ss_pred             HHHHHHcC------CCCCC-----chhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELG------LGPNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~------L~~~~-----~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      ....+...      -.|.|     +.+.-.-...+++++++||.++.  +|++++|||.|+ ||..+.+.+. .-++.+.
T Consensus       370 ~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~~~  446 (497)
T COG5265         370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALREVS  446 (497)
T ss_pred             HHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHHHh
Confidence            11111111      11211     00100112334567999999999  999999999999 9999988877 7778875


Q ss_pred             hCCCeEEEEEe
Q 025844          128 SRNFNVCAVYL  138 (247)
Q Consensus       128 ~~~~~ii~v~l  138 (247)
                      +...++++.|-
T Consensus       447 ~~rttlviahr  457 (497)
T COG5265         447 AGRTTLVIAHR  457 (497)
T ss_pred             CCCeEEEEeeh
Confidence            54444544453

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.50  E-value=4.9e-14  Score=118.36  Aligned_cols=106  Identities=12%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH--------hCCcCCCceEEEeccCCCCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCch
Q 025844            4 AQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGL   74 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~--------g~l~~~~G~v~i~g~d~~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~   74 (247)
                      +++|+||||||||||++++.        |..-|....+          .++| .+.++            .++.....  
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------~~~~~~~~~~------------~lg~~~~l--   85 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------SLPVFENIFA------------DIGDEQSI--   85 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------cCcCccEEEE------------ecCchhhh--
Confidence            58999999999999999998        4333322111          2333 12111            11111000  


Q ss_pred             hhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           75 IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        75 ~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ...+..++.+++  ..++++ +.  +|+++++|||++ +|+..+..+...+++.+++.+.+++++
T Consensus        86 ~~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~  147 (200)
T cd03280          86 EQSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT  147 (200)
T ss_pred             hcCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            000123444443  444444 35  899999999999 999999888756788887667777555

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.50  E-value=2.8e-13  Score=113.73  Aligned_cols=125  Identities=10%  Similarity=0.049  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCC-----ce----EEEeccCCCC-----CCCCCCc-ccChhhhHhHHHHHHHcCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVR-----RT----MHIVNLDPAA-----ENFDYPV-AMDIRELISLEDVMEELGL   68 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-----G~----v~i~g~d~~~-----~~~~y~~-~~~v~e~i~~~~~l~~~~L   68 (247)
                      +.+|+|||||||||++.+|...+....     |.    +.-.|.+.+.     ++-...+ .....+.-.++++++.   
T Consensus        23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---   99 (198)
T cd03276          23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS---   99 (198)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc---
Confidence            568999999999999999985433221     10    0000100000     0000001 0111112235666665   


Q ss_pred             CCCCchhhhHHhhhhhHH--HHHHHHh----hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC--C-CeEEEE
Q 025844           69 GPNGGLIYCMEHLEDNLD--DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR--N-FNVCAV  136 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~--~~la~al----~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~--~-~~ii~v  136 (247)
                      .......  ...++.+++  +.+|+++    +.  +|+++|+|||++ +|+..+..+. ++++++.+.  + .+++++
T Consensus       100 ~~~~~~~--~~~lS~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~~~~~~~~iii~  172 (198)
T cd03276         100 NKAAVRD--VKTLSGGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAKKQPGRQFIFIT  172 (198)
T ss_pred             ccccCCc--ccccChhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHhcCCCcEEEEEE
Confidence            2221111  234555544  7888888    46  999999999999 9999999998 777776432  3 345444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.49  E-value=1.3e-13  Score=128.89  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~------   58 (247)
                      -+++|.|--|||+|=++++|.|.-++.+|+|.++|.+...        ..+.|          .+.++|.+|++      
T Consensus       286 EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~  365 (500)
T COG1129         286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR  365 (500)
T ss_pred             cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence            4789999999999999999999999999999999975432        12333          23556777765      


Q ss_pred             ---------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844           59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (247)
Q Consensus        59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (247)
                                     ++++.+.+++........ ...+++|  +++.||+.|+.  +|++|||||||. +|.-++.++. 
T Consensus       366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy-  441 (500)
T COG1129         366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY-  441 (500)
T ss_pred             hccccccChHHHHHHHHHHHHhcCcccCCccch-hhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-
Confidence                           455555666543322111 2345442  44999999999  999999999999 9999999999 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccchhHHhhhh
Q 025844          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      +++++++++|.+|+++.    ..+.+....|+++
T Consensus       442 ~li~~lA~~G~ail~iS----SElpEll~~~DRI  471 (500)
T COG1129         442 RLIRELAAEGKAILMIS----SELPELLGLSDRI  471 (500)
T ss_pred             HHHHHHHHCCCEEEEEe----CChHHHHhhCCEE
Confidence            99999999999998773    5566666666633

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.48  E-value=1.3e-13  Score=131.19  Aligned_cols=128  Identities=16%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C-CCCCCCCCcccChhhhHh------------HHHHHHHcCCCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELIS------------LEDVMEELGLGP   70 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~-~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L~~   70 (247)
                      +.|.||||||||||+|+|+|+-+.-+|+|..-... . --..-||.|.-+.||.+.            +.++|.++||++
T Consensus       422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~  501 (604)
T COG4178         422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD  501 (604)
T ss_pred             EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence            57999999999999999999999999998765211 0 012234533335555553            778889999886


Q ss_pred             CCchhhh----HHhhh--hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           71 NGGLIYC----MEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ~~~~~~~----~~~l~--~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .......    -..++  +++++++||.+.+  +|++++|||-|+ ||+.+...++ +++++-- .+.++|.|
T Consensus       502 L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV  570 (604)
T COG4178         502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV  570 (604)
T ss_pred             HHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence            4322110    11233  3456999999999  999999999999 9999998877 5544411 46777766

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.46  E-value=2.7e-13  Score=138.82  Aligned_cols=131  Identities=20%  Similarity=0.208  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC---
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP---   70 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~---   70 (247)
                      ..++|+||-|||||+|+.+|.|.++..+|++.+.|.-.-....||-++-||||||-         ++++++.+.|.+   
T Consensus       548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle  627 (1381)
T KOG0054|consen  548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE  627 (1381)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHh
Confidence            35899999999999999999999999999999998622122234455779999985         677888776643   


Q ss_pred             ---CCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           71 ---NGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ---~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                         .|++..-   --.+++|+  |+.||||+-+  ++|+++||.|.+ +|....+.++++.++.+-+ ++|+|.|
T Consensus       628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~L~-~KT~ILV  699 (1381)
T KOG0054|consen  628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGLLR-GKTVILV  699 (1381)
T ss_pred             hcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc-CCEEEEE
Confidence               2211100   01355555  4899999999  999999999999 9999999999888866544 5666655

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.3e-13  Score=124.11  Aligned_cols=123  Identities=18%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCC-c--------ccChhhhH---------hHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-V--------AMDIRELI---------SLEDVME   64 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~-~--------~~~v~e~i---------~~~~~l~   64 (247)
                      --++|+||||.|||||++.+.|-+.|+.|+.+-+-.    -.++++ +        .-+.-+++         .++..+-
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG  689 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLG  689 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhh
Confidence            357999999999999999999999999998754321    011110 0        01112222         2566677


Q ss_pred             HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .+||......+. +..+++++.  +++|...+.  .|++|||||||+ ||+.+...+. +.|+..  +| .||+|
T Consensus       690 ~fGL~sHAHTik-ikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney--~G-gVi~V  757 (807)
T KOG0066|consen  690 TFGLASHAHTIK-IKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEY--NG-GVIMV  757 (807)
T ss_pred             hhhhhhccceEe-eeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhc--cC-cEEEE
Confidence            777765543332 234666654  777766666  999999999999 9999887766 666555  23 45555

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.44  E-value=1.5e-13  Score=114.10  Aligned_cols=115  Identities=13%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-hCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      +++|.||||||||||+|.+. ..+.+..|....-    ..-.+++.           ++++..++........  ...++
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a----~~~~~~~~-----------d~il~~~~~~d~~~~~--~s~fs   63 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA----ESAELPVF-----------DRIFTRIGASDSLAQG--LSTFM   63 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee----hheEeccc-----------ceEEEEeCCCCchhcc--ccHHH
Confidence            36799999999999999998 4444444432211    01122221           1122233332221111  23455


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      .++ ..+++++....+|+++|+|||+. +|+.....+...+++.+.+. +.+++++
T Consensus        64 ~~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~  118 (185)
T smart00534       64 VEM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA  118 (185)
T ss_pred             HHH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            555 44555555444899999999999 99998888776788888663 6666544

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.41  E-value=2.7e-13  Score=113.99  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .++|+||||||||||++++++. +.+..|.... .   ....+++...           .+..++........  +..+.
T Consensus        31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~---~~~~i~~~dq-----------i~~~~~~~d~i~~~--~s~~~   93 (202)
T cd03243          31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A---ESASIPLVDR-----------IFTRIGAEDSISDG--RSTFM   93 (202)
T ss_pred             EEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c---cccccCCcCE-----------EEEEecCcccccCC--ceeHH
Confidence            6899999999999999999943 3233343211 0   0112222110           00011111000000  11222


Q ss_pred             hhH-HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           83 DNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        83 ~~~-~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .++ +...+.+.+.  +|+++|+|||++ +|+.....+...+++.+.+.+.+++++
T Consensus        94 ~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~  147 (202)
T cd03243          94 AELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA  147 (202)
T ss_pred             HHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            333 1222334445  999999999999 999988887756778776667777655

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.1e-12  Score=121.59  Aligned_cols=128  Identities=21%  Similarity=0.195  Sum_probs=88.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCc-------cc--ChhhhH----------hHHHHHHH
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-------AM--DIRELI----------SLEDVMEE   65 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~-------~~--~v~e~i----------~~~~~l~~   65 (247)
                      ++++|+||+||||+++++.|-++|..|.+.+.+.    ..+.|+.       +.  +.-+..          .++.-+..
T Consensus       393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r----~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~  468 (582)
T KOG0062|consen  393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR----LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS  468 (582)
T ss_pred             hheeccCchhHHHHHHHHhccCCcccceeeeccc----ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence            5789999999999999999999999998776642    2333421       11  111111          16677788


Q ss_pred             cCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844           66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (247)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (247)
                      +|+....+... +..+++|+.  +++|.....  +|.+|+|||||+ ||..+...+.    +.++..+..||+|. ||.+
T Consensus       469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GGVv~VS-Hd~~  540 (582)
T KOG0062|consen  469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALA----KALKNFNGGVVLVS-HDEE  540 (582)
T ss_pred             cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHH----HHHHhcCCcEEEEE-CcHH
Confidence            89987665554 566888875  778877777  999999999999 9988765444    55555444566663 4544


Q ss_pred             cc
Q 025844          143 FI  144 (247)
Q Consensus       143 ~~  144 (247)
                      ++
T Consensus       541 fi  542 (582)
T KOG0062|consen  541 FI  542 (582)
T ss_pred             HH
Confidence            43

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.40  E-value=2e-12  Score=120.37  Aligned_cols=117  Identities=21%  Similarity=0.316  Sum_probs=68.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEE--ecc--CCCC---------------CCCCCC-----c---cc------
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHI--VNL--DPAA---------------ENFDYP-----V---AM------   51 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i--~g~--d~~~---------------~~~~y~-----~---~~------   51 (247)
                      ++|+|||||||||++++++|-..|..-++-+  ...  .|..               ..+.|.     +   +.      
T Consensus       104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~  183 (614)
T KOG0927|consen  104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD  183 (614)
T ss_pred             EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHH
Confidence            6899999999999999999988775433322  111  1100               000000     0   00      


Q ss_pred             Chhhh--------Hh--HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           52 DIREL--------IS--LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        52 ~v~e~--------i~--~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                      ++.+.        +.  +..+|..+|..+....... ..+++|++  ++|||+|..  +|++|+|||||+ ||+.+...+
T Consensus       184 ~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wL  260 (614)
T KOG0927|consen  184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-KDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAIVWL  260 (614)
T ss_pred             HHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-hccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHH
Confidence            00000        00  3334444444433322222 34666654  899999999  999999999999 999987554


Q ss_pred             HHHHHHH
Q 025844          119 LRNFVDH  125 (247)
Q Consensus       119 ~~~ll~~  125 (247)
                      - +.+.+
T Consensus       261 e-e~L~k  266 (614)
T KOG0927|consen  261 E-EYLAK  266 (614)
T ss_pred             H-HHHHh
Confidence            3 44433

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.37  E-value=2.3e-12  Score=107.86  Aligned_cols=140  Identities=16%  Similarity=0.262  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC----CceEEEeccCC-----CC------CCCCC---------CcccChh-hhH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDP-----AA------ENFDY---------PVAMDIR-ELI   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~----~G~v~i~g~d~-----~~------~~~~y---------~~~~~v~-e~i   57 (247)
                      -+-+++|.+|||||-..|+|+|..+..    .-..++++.|.     ..      +++..         .|.-+|. +.+
T Consensus        34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI  113 (330)
T COG4170          34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI  113 (330)
T ss_pred             eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence            467899999999999999999987642    22344444332     11      11111         1111111 111


Q ss_pred             h---------------------HHHHHHHcCCCCCCchhhhHHhhhh------hHHHHHHHHhhcCCCCCEEEEeCCCc-
Q 025844           58 S---------------------LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ-  109 (247)
Q Consensus        58 ~---------------------~~~~l~~~~L~~~~~~~~~~~~l~~------~~~~~la~al~~~~~p~~lilDEPt~-  109 (247)
                      .                     +-+.+.++|+....+...   .++.      ++.+.||.|++.  +|++||.||||+ 
T Consensus       114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~  188 (330)
T COG4170         114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNS  188 (330)
T ss_pred             hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcchhccCcceeeeeehhhcc--CCceEeccCCCcc
Confidence            1                     567888888877654432   2222      234889999999  999999999999 


Q ss_pred             ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844          110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       110 LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +|+.++.+++ +++.++.+. +.+++.+    +|.+...+.+++
T Consensus       189 ~e~~Tq~Qif-RLLs~mNQn~~TtILL~----s~Dl~~is~W~d  227 (330)
T COG4170         189 MEPTTQAQIF-RLLSRLNQNSNTTILLI----SHDLQMISQWAD  227 (330)
T ss_pred             cCccHHHHHH-HHHHHhhccCCceEEEE----cccHHHHHHHhh
Confidence            9999999999 999999864 6666433    577776777766

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.36  E-value=2.9e-12  Score=108.83  Aligned_cols=55  Identities=9%  Similarity=0.032  Sum_probs=39.3

Q ss_pred             HhhhhhHH--HHHH----HHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C-CeEEEE
Q 025844           79 EHLEDNLD--DWLA----EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N-FNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~--~~la----~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~-~~ii~v  136 (247)
                      ..++.+++  ..++    ++++.  +|+++|+|||++ +|+.....++ +++.++.++ | .+++++
T Consensus       125 ~~LS~G~~q~~~i~~~la~~~~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viii  188 (213)
T cd03277         125 HHQSGGERSVSTMLYLLSLQELT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLI  188 (213)
T ss_pred             hhccccHHHHHHHHHHHHHHhcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEE
Confidence            45666654  2222    33346  999999999999 9999999998 888777654 5 355555

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.34  E-value=7.4e-12  Score=104.48  Aligned_cols=129  Identities=16%  Similarity=0.254  Sum_probs=87.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-----------------CcccChhhhHh--
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-----------------PVAMDIRELIS--   58 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-----------------~~~~~v~e~i~--   58 (247)
                      ..++|.||||||||+|+++|-.-.-.|.|.+.|.++-.       ..+.|                 .-++++...+.  
T Consensus        43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV  122 (291)
T KOG2355|consen   43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV  122 (291)
T ss_pred             EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence            36899999999999999999877777999999987632       11222                 11233333221  


Q ss_pred             -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-
Q 025844           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-  127 (247)
Q Consensus        59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-  127 (247)
                             -++.++.+.+.    ....|+..+.|++  +.|+..|+.  .=++|+|||-|- ||..++..++ +++++-. 
T Consensus       123 ~g~dp~Rre~LI~iLDId----l~WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce  195 (291)
T KOG2355|consen  123 GGDDPERREKLIDILDID----LRWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECE  195 (291)
T ss_pred             cCCChhHhhhhhhheecc----ceEEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHh
Confidence                   12233333322    2233556666664  788888877  779999999998 9999999998 7777654 


Q ss_pred             hCCCeEEEE-Eecc
Q 025844          128 SRNFNVCAV-YLLD  140 (247)
Q Consensus       128 ~~~~~ii~v-~l~d  140 (247)
                      +.|.+|+.. |++|
T Consensus       196 ~RgatIVYATHIFD  209 (291)
T KOG2355|consen  196 QRGATIVYATHIFD  209 (291)
T ss_pred             hcCcEEEEEeeecc
Confidence            457787654 5555

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.32  E-value=8.2e-12  Score=101.45  Aligned_cols=109  Identities=16%  Similarity=0.105  Sum_probs=66.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      +++|+|||||||||+++.+....-...|.+... .+.   ..++ .+...+.    .  +....+             ++
T Consensus        23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---~~g~~~~~~~~~----~--i~~~~~-------------lS   79 (162)
T cd03227          23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---KAGCIVAAVSAE----L--IFTRLQ-------------LS   79 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---cCCCcceeeEEE----E--ehheee-------------cc
Confidence            678999999999999999876655554443331 111   1111 1111100    0  111111             22


Q ss_pred             hhH--HHHHHHHhhcCC--CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           83 DNL--DDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        83 ~~~--~~~la~al~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .++  +..+++++....  +|+++|+|||+. +|+.....+. +.+.++.+++.+++++
T Consensus        80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~  137 (162)
T cd03227          80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVI  137 (162)
T ss_pred             ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence            222  277888887522  689999999999 9999999988 6665554446666544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.32  E-value=1.1e-11  Score=102.48  Aligned_cols=50  Identities=10%  Similarity=0.071  Sum_probs=40.0

Q ss_pred             HHHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           86 DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        86 ~~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ++.++++++.  ..+|+++|+|||++ +|+.....+. +.++++.+.|.+++++
T Consensus       102 r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIii  154 (178)
T cd03239         102 LSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVI  154 (178)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            3788888752  12899999999999 9999999988 7888876666777655

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.31  E-value=7.9e-12  Score=106.17  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH--hCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~--g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      .++|.||||+|||||+|.+.  +++ +..|.+.... .   -.++|....           +..  ++...........+
T Consensus        31 ~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-~---~~~~~~d~i-----------~~~--l~~~~si~~~~S~f   92 (213)
T cd03281          31 IMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-S---ATIGLVDKI-----------FTR--MSSRESVSSGQSAF   92 (213)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-C---cEEeeeeee-----------eee--eCCccChhhccchH
Confidence            57899999999999999998  333 4455543321 1   112221100           000  01110000001122


Q ss_pred             hhhH-HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        82 ~~~~-~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                      ...+ ++.++.+++.  +|+++|+|||+. +|+.....+...+++.+.+.
T Consensus        93 ~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~  140 (213)
T cd03281          93 MIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR  140 (213)
T ss_pred             HHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence            2223 2566666677  999999999999 99987666654788888654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.29  E-value=6.6e-12  Score=105.98  Aligned_cols=114  Identities=15%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      +++|+||||+||||++++++++.-- .-|- .+    |+.     ...+++.     ++++..++...+....  ...++
T Consensus        31 ~~~l~G~n~~GKstll~~i~~~~~la~~G~-~v----pa~-----~~~l~~~-----d~I~~~~~~~d~~~~~--~S~fs   93 (204)
T cd03282          31 FHIITGPNMSGKSTYLKQIALLAIMAQIGC-FV----PAE-----YATLPIF-----NRLLSRLSNDDSMERN--LSTFA   93 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Cc----chh-----hcCccCh-----hheeEecCCccccchh--hhHHH
Confidence            5789999999999999999976411 1110 00    111     1122222     2334445554332222  23455


Q ss_pred             hhHH-HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           83 DNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        83 ~~~~-~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .+++ ...+.+++.  +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus        94 ~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~  147 (204)
T cd03282          94 SEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA  147 (204)
T ss_pred             HHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            5553 222233445  899999999998 999877776657888887777777554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.29  E-value=2.9e-11  Score=127.03  Aligned_cols=71  Identities=20%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             HHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhh---cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844           61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (247)
Q Consensus        61 ~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~---~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (247)
                      ++++.+|++.. .+..  ...+++++  ++.||++++   .  +|+++||||||+ ||+.....++ ++++++++.|.++
T Consensus       791 ~~L~~vGL~~l~l~q~--~~tLSGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TV  865 (1809)
T PRK00635        791 HALCSLGLDYLPLGRP--LSSLSGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTV  865 (1809)
T ss_pred             HHHHHcCCcchhhcCc--cccCCHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEE
Confidence            46777888753 2222  23466554  489999997   5  899999999999 9999999999 9999998778888


Q ss_pred             EEE
Q 025844          134 CAV  136 (247)
Q Consensus       134 i~v  136 (247)
                      +++
T Consensus       866 IiI  868 (1809)
T PRK00635        866 VII  868 (1809)
T ss_pred             EEE
Confidence            766

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.27  E-value=2.7e-11  Score=110.12  Aligned_cols=131  Identities=18%  Similarity=0.189  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--------CcCCCceEEEeccCCCCCCCC--CCc---ccChhhhHh--------HHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH--------CETVRRTMHIVNLDPAAENFD--YPV---AMDIRELIS--------LED   61 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~--------l~~~~G~v~i~g~d~~~~~~~--y~~---~~~v~e~i~--------~~~   61 (247)
                      -+++|+|++||||||+++++.|.        ++|++|.|.+.-...++ .+|  +.+   ..++.+++.        ..+
T Consensus       410 dvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a-~iPge~Ep~f~~~tilehl~s~tGD~~~Ave  488 (593)
T COG2401         410 DVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA-LIPGEYEPEFGEVTILEHLRSKTGDLNAAVE  488 (593)
T ss_pred             CeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh-ccCcccccccCchhHHHHHhhccCchhHHHH
Confidence            36899999999999999999995        47899999875433221 111  222   334555543        678


Q ss_pred             HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 025844           62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY  137 (247)
Q Consensus        62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~  137 (247)
                      ++++.|++..--.......++.++.  ..||.+++.  .|.+++.||-.+ ||+.+...+. +-+.++++ .|.|+++++
T Consensus       489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivvT  565 (593)
T COG2401         489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVVT  565 (593)
T ss_pred             HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence            9999999876555555667777765  889999999  999999999999 9999999998 55667764 588877663

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.26  E-value=4.3e-11  Score=105.03  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      ..++|+||||||||||++.++|.+.|.+|++.++|.+..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence            357999999999999999999999999999999997764

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.25  E-value=8.4e-11  Score=118.33  Aligned_cols=72  Identities=19%  Similarity=0.247  Sum_probs=55.1

Q ss_pred             HHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844           60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (247)
Q Consensus        60 ~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (247)
                      .+.++.+||+.. .++.  ...+++|.  ++.||++++.  +|   +++|||||++ ||+.....++ ++++++.+.|.+
T Consensus       811 l~~L~~vgL~~l~l~~~--~~tLSgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~T  885 (943)
T PRK00349        811 LQTLVDVGLGYIKLGQP--ATTLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNT  885 (943)
T ss_pred             HHHHHHCCCCcccccCC--cccCCHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence            345666788642 2222  23466554  4899999998  88   9999999999 9999999999 889998777888


Q ss_pred             EEEE
Q 025844          133 VCAV  136 (247)
Q Consensus       133 ii~v  136 (247)
                      ++++
T Consensus       886 VIii  889 (943)
T PRK00349        886 VVVI  889 (943)
T ss_pred             EEEE
Confidence            8766

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.21  E-value=5.3e-11  Score=100.59  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=36.1

Q ss_pred             HHHHHHhhcCCCCCEEEEeCCC-----c-ccHHhHHHHHHHHHHHHHh
Q 025844           87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        87 ~~la~al~~~~~p~~lilDEPt-----~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      .+||+++..  +|+++++||||     + ||+..+..+. ++++++++
T Consensus       161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~  205 (215)
T PTZ00132        161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN  205 (215)
T ss_pred             HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence            789999999  99999999999     9 9999999998 88888854

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.20  E-value=1.5e-10  Score=116.23  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=54.1

Q ss_pred             HHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        60 ~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                      .++++.+||+.. .++.  ...+++|.  ++.||++++.- .+|+++|||||++ ||+.....+. ++++++.+.|.+++
T Consensus       809 l~~L~~~gL~~l~l~~~--~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVI  885 (924)
T TIGR00630       809 LQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVV  885 (924)
T ss_pred             HHHHHHcCCCchhhcCc--cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence            345666777642 2222  24466654  48899999861 1489999999999 9999999998 88999877788887


Q ss_pred             EE
Q 025844          135 AV  136 (247)
Q Consensus       135 ~v  136 (247)
                      ++
T Consensus       886 vi  887 (924)
T TIGR00630       886 VI  887 (924)
T ss_pred             EE
Confidence            66

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.20  E-value=6.3e-11  Score=101.25  Aligned_cols=110  Identities=12%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      +++|.||||||||||++.++-.. -...|-     .-|+..     ..+.     -+++++..+++.+....  ....+.
T Consensus        32 ~~~l~G~n~~GKstll~~i~~~~~la~~g~-----~vpa~~-----~~~~-----~~~~il~~~~l~d~~~~--~lS~~~   94 (222)
T cd03285          32 FLIITGPNMGGKSTYIRQIGVIVLMAQIGC-----FVPCDS-----ADIP-----IVDCILARVGASDSQLK--GVSTFM   94 (222)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHhCC-----CcCccc-----EEEe-----ccceeEeeeccccchhc--CcChHH
Confidence            68999999999999999987320 000110     001100     0001     13445566666544311  122333


Q ss_pred             hhHHHHHHHHh--hcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           83 DNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        83 ~~~~~~la~al--~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                      .++ ..+++++  +.  +|+++|+|||   |+ +|+.+...   .+++.+.+ .+.+++++
T Consensus        95 ~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis  149 (222)
T cd03285          95 AEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA  149 (222)
T ss_pred             HHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE
Confidence            444 6667677  55  9999999999   88 99987743   44566654 35666444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.19  E-value=4.9e-11  Score=101.53  Aligned_cols=108  Identities=14%  Similarity=0.128  Sum_probs=58.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCC----cccChhhhHhHHHHHHHcCCCCCCchhhhH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYCM   78 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~----~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~   78 (247)
                      +++|+||||||||||+|.+++..-. ..|..    .+.....+++.    +.+++.+++..       |          .
T Consensus        32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~~i~~~~~~~~~ls~-------g----------~   90 (216)
T cd03284          32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVDRIFTRIGASDDLAG-------G----------R   90 (216)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceecceeeEeccCCchhhhcc-------C----------c
Confidence            5789999999999999999864311 12211    01111223331    12222222210       0          0


Q ss_pred             HhhhhhHHHHHHHHhhcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           79 EHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~~~la~al~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      ..+...+ ..++.++....+|+++|+|||   |+ +|....   ...+++.+.+. +.+++++
T Consensus        91 s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~---~~~il~~l~~~~~~~vi~~  149 (216)
T cd03284          91 STFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLSI---AWAIVEYLHEKIGAKTLFA  149 (216)
T ss_pred             chHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH---HHHHHHHHHhccCCcEEEE
Confidence            1122222 345555543338999999999   87 887542   22566777655 6666554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=3.6e-11  Score=110.00  Aligned_cols=133  Identities=17%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCCCCCCC--------------------------CcccChhhh
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAAENFDY--------------------------PVAMDIREL   56 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~~~~~y--------------------------~~~~~v~e~   56 (247)
                      ++++||||-|||||++.|+.-  --|..=.|.+..+.+.....+-                          .-+.++.+-
T Consensus       293 YGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaEr  372 (807)
T KOG0066|consen  293 YGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAER  372 (807)
T ss_pred             ecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            589999999999999999853  2233334544443321111000                          001122211


Q ss_pred             Hh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844           57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (247)
Q Consensus        57 i~-----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~  116 (247)
                      +.                 ++.++.-+|+.+......+ ..++++++  +.+||||..  +|.+|.|||||+ ||+.+..
T Consensus       373 l~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt-~kFSGGWRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVI  449 (807)
T KOG0066|consen  373 LKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT-TKFSGGWRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVI  449 (807)
T ss_pred             HHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc-cccCCceeeehhHHHHHhc--CceeeeecCCccccccceee
Confidence            11                 4556666666654433333 35666654  999999999  999999999999 9998765


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025844          117 PVLRNFVDHLKSRNFNVCAVYLLDSQFIT  145 (247)
Q Consensus       117 ~~~~~ll~~l~~~~~~ii~v~l~d~~~~~  145 (247)
                      .+- +.++.++   .|+++|. +|-.++.
T Consensus       450 WLd-NYLQgWk---KTLLIVS-HDQgFLD  473 (807)
T KOG0066|consen  450 WLD-NYLQGWK---KTLLIVS-HDQGFLD  473 (807)
T ss_pred             ehh-hHHhhhh---heeEEEe-cccchHH
Confidence            444 6666653   4666663 4554443

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.18  E-value=1.5e-10  Score=108.83  Aligned_cols=127  Identities=14%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CC-C---CCCCCCcccChhhhH-----------------hHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA-A---ENFDYPVAMDIRELI-----------------SLED   61 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~-~---~~~~y~~~~~v~e~i-----------------~~~~   61 (247)
                      -+.|.||||||||+|+|++.|+.+..+|++..-... +. .   ..-||.+.=|.||.+                 .+.+
T Consensus       463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r  542 (659)
T KOG0060|consen  463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR  542 (659)
T ss_pred             eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence            367999999999999999999999899988764321 01 0   111222211333332                 2556


Q ss_pred             HHHHcCCCCCC---------chhhhHHhhh--hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           62 VMEELGLGPNG---------GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        62 ~l~~~~L~~~~---------~~~~~~~~l~--~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                      .++.++|++..         .....++.++  +.+|.++||.+..  +|++-||||-|+ ++......+. +.   .++.
T Consensus       543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r~---~r~~  616 (659)
T KOG0060|consen  543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-RK---CREM  616 (659)
T ss_pred             HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-HH---HHHc
Confidence            66666665421         1111233444  3466899999999  999999999999 9988765555 43   4445


Q ss_pred             CCeEEEE
Q 025844          130 NFNVCAV  136 (247)
Q Consensus       130 ~~~ii~v  136 (247)
                      |+|.+.|
T Consensus       617 giT~iSV  623 (659)
T KOG0060|consen  617 GITFISV  623 (659)
T ss_pred             CCeEEEe
Confidence            8888766

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.14  E-value=2e-10  Score=98.16  Aligned_cols=115  Identities=15%  Similarity=0.176  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g-~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      +++|+||||+||||+++.+++ .+.++.|...+.. .   -.++|...+           +-..+  ...........+.
T Consensus        33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~i-----------~~~~~--~~d~~~~~~StF~   95 (222)
T cd03287          33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDSV-----------LTRMG--ASDSIQHGMSTFM   95 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccceE-----------EEEec--CccccccccchHH
Confidence            578999999999999999999 6777888755431 1   123332111           00001  0000000012333


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      ..+ ..++..+....+++++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus        96 ~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~  150 (222)
T cd03287          96 VEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV  150 (222)
T ss_pred             HHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence            334 34444444333899999999976 77655555544778887765 6566544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.13  E-value=1.2e-10  Score=115.36  Aligned_cols=116  Identities=12%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC-CcCCCc-eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~-l~~~~G-~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      -.++|+||||+|||||+|+++|. +.+..| .|-...    ...++|...+           ..  .+++.......+..
T Consensus       323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~----~~~~~~~d~i-----------~~--~i~~~~si~~~LSt  385 (771)
T TIGR01069       323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE----HSEIPYFEEI-----------FA--DIGDEQSIEQNLST  385 (771)
T ss_pred             eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc----cccccchhhe-----------ee--ecChHhHHhhhhhH
Confidence            36799999999999999999998 555555 221110    0123331110           00  11111111111234


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ++.++ ..++..+....+|+++|+|||++ +|+.....+...+++.+.+.|.+++++
T Consensus       386 fS~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit  441 (771)
T TIGR01069       386 FSGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT  441 (771)
T ss_pred             HHHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            55555 23333333223899999999999 999999888657888887777766554

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.04  E-value=1.9e-09  Score=91.42  Aligned_cols=68  Identities=18%  Similarity=0.320  Sum_probs=43.6

Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhHH--H--HHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--D--WLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~--~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (247)
                      +.+.+...++.+.        .+++|.+  .  ++.-|+....+.+++|||||.+ ||...+..+. .+++++.+ +.-+
T Consensus       123 ~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~  192 (220)
T PF02463_consen  123 LEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQF  192 (220)
T ss_dssp             HHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEE
T ss_pred             ccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence            5567777777665        4666654  2  2222333444778999999999 9999999988 88888754 3455


Q ss_pred             EEE
Q 025844          134 CAV  136 (247)
Q Consensus       134 i~v  136 (247)
                      +++
T Consensus       193 ii~  195 (220)
T PF02463_consen  193 IIT  195 (220)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            554

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.01  E-value=1.1e-09  Score=100.06  Aligned_cols=126  Identities=16%  Similarity=0.204  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCCCCCCcccChhhhHh------------HHHHHHHcCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L~   69 (247)
                      .++..+|.||.|||||+++++|.++|+.| ++-..+.....+.+.-...-++|+.+.            +.++|+-+.+.
T Consensus       368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie  447 (592)
T KOG0063|consen  368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE  447 (592)
T ss_pred             eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence            35778999999999999999999999876 343333222222222112234555442            55666655554


Q ss_pred             CCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH-HhCCCeE
Q 025844           70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL-KSRNFNV  133 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l-~~~~~~i  133 (247)
                      ...++.  ...+++|  +|+++|..+-.  .+++.+.|||.. ||...+.... ..+++. -..+++-
T Consensus       448 ~i~dqe--vq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakkta  510 (592)
T KOG0063|consen  448 NIIDQE--VQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKTA  510 (592)
T ss_pred             HHHhHH--hhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccchh
Confidence            332222  2233433  45888888888  899999999999 9999887776 555553 2334443

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.00  E-value=9.6e-10  Score=102.57  Aligned_cols=123  Identities=19%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-C--ccc---ChhhhHh-----------------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P--VAM---DIRELIS-----------------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~--~~~---~v~e~i~-----------------~~   60 (247)
                      -+.|+||||||||+|+|++.|+.+...|...+-    ..+++-| |  |.+   |.||.+-                 ++
T Consensus       510 hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~  585 (728)
T KOG0064|consen  510 HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLE  585 (728)
T ss_pred             eEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHH
Confidence            367999999999999999999998877766532    1111111 0  111   2222221                 22


Q ss_pred             HHHHHcCCCC-------CCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           61 DVMEELGLGP-------NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        61 ~~l~~~~L~~-------~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                      .++..+.|..       ........+.+++|  ++..+||.+-+  +|+|-+|||-|+ +-+.....++    +..+..|
T Consensus       586 ~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~----~~ak~~g  659 (728)
T KOG0064|consen  586 AILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF----QAAKDAG  659 (728)
T ss_pred             HHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH----HHHHhcC
Confidence            3333332221       11111112344443  56889999988  999999999998 6665544433    4455568


Q ss_pred             CeEEEE
Q 025844          131 FNVCAV  136 (247)
Q Consensus       131 ~~ii~v  136 (247)
                      .+.+.|
T Consensus       660 i~llsi  665 (728)
T KOG0064|consen  660 ISLLSI  665 (728)
T ss_pred             ceEEEe
Confidence            887665

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.96  E-value=1.8e-09  Score=92.71  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844           98 DDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        98 ~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      +|+++++|||++ +    |+...+.+. ++++.+++.|.+++++|
T Consensus       117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t~  160 (230)
T PRK08533        117 EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILTA  160 (230)
T ss_pred             CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence            799999999998 7    777777777 88888877777766654

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=98.96  E-value=1.3e-09  Score=95.98  Aligned_cols=55  Identities=16%  Similarity=-0.072  Sum_probs=39.6

Q ss_pred             hhhhhHH--HHHHHHhhcC--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           80 HLEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        80 ~l~~~~~--~~la~al~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .++++++  +.+|++++..  .+|+++++|||++ +|+.....+. +.+.++.+ +.+++++
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~i  229 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCI  229 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence            3555543  5666544321  2899999999999 9999999988 77887754 5666555

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.95  E-value=4.9e-09  Score=83.25  Aligned_cols=121  Identities=19%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhh---HHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC---MEH   80 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~---~~~   80 (247)
                      +++|.||||+||||+++.+++...+.++.+.+...+.....        .....   ......+...+......   ...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   69 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPA   69 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCc
Confidence            36899999999999999999998888888887765432111        00000   00111110000000000   000


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHh---------HHHHHHHHHHHHHhCCCeEEEEE
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT---------HVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~---------~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      .....+.+.+.+...  +|+++++|||+. ++...         ....+..+.+..++.+.+++++.
T Consensus        70 ~~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~  134 (165)
T cd01120          70 AARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTL  134 (165)
T ss_pred             HHHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence            000011334545555  899999999997 54432         12333366666655678877764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.91  E-value=2.7e-08  Score=82.09  Aligned_cols=124  Identities=15%  Similarity=0.244  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEec-cCCC-C-----------CCCCCCcccChhhhHh----HHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPA-A-----------ENFDYPVAMDIRELIS----LEDVME   64 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g-~d~~-~-----------~~~~y~~~~~v~e~i~----~~~~l~   64 (247)
                      ++.|+|.||||||||+.+|+--...  .+|.=-+.+ .|+. .           ...+-...+.......    ++|+..
T Consensus        39 IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~~  118 (233)
T COG3910          39 ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEADG  118 (233)
T ss_pred             eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhhh
Confidence            6789999999999999999854332  222211111 1111 0           0100000111122222    445554


Q ss_pred             HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.+.+++.     ++..+.|-+  ..+.+.+ .  ..-+.|||||-+ |-|..+-.+. .+++.+.+.|.-+|++
T Consensus       119 e~~~~~~s-----Lh~~SHGEsf~~i~~~rf-~--~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiA  184 (233)
T COG3910         119 EANYGGRS-----LHHMSHGESFLAIFHNRF-N--GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIA  184 (233)
T ss_pred             hcccCCcc-----hhhhccchHHHHHHHHHh-c--cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEE
Confidence            44444332     334444432  2333333 2  678999999999 9999888888 8999998888666655

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.89  E-value=1.7e-08  Score=93.60  Aligned_cols=142  Identities=14%  Similarity=0.161  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-CC--------CCCCC----------CcccChhhhHh-----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDY----------PVAMDIRELIS-----   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~~--------~~~~y----------~~~~~v~e~i~-----   58 (247)
                      -+++|.|-.|-|-+.|+.+|+|+.++.+|+|.++|.|. ..        ..++|          -+++++.+|+-     
T Consensus       285 EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~  364 (501)
T COG3845         285 EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD  364 (501)
T ss_pred             cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence            47999999999999999999999998889999999885 11        12333          22456666542     


Q ss_pred             ------------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844           59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (247)
Q Consensus        59 ------------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~  117 (247)
                                        ..+++++++..+.+.... ...+++|  +++.+||.+..  +|++||+-+||. ||..+...
T Consensus       365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~  441 (501)
T COG3845         365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEF  441 (501)
T ss_pred             ccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-hhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHH
Confidence                              678888998875433332 2345543  44889999999  999999999999 99999888


Q ss_pred             HHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       118 ~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +. +.+.+.++.|..|+++.    ..+.+.-..++
T Consensus       442 I~-~~l~e~r~~G~AVLLiS----~dLDEil~lsD  471 (501)
T COG3845         442 IH-ERLLELRDAGKAVLLIS----EDLDEILELSD  471 (501)
T ss_pred             HH-HHHHHHHhcCCEEEEEe----hhHHHHHHhhh
Confidence            87 66666677898887663    44444444444

>PRK13695 putative NTPase; Provisional

Probab=98.82  E-value=5.1e-09  Score=85.79  Aligned_cols=122  Identities=18%  Similarity=0.278  Sum_probs=61.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-----CCCCCCCCcccChhhhH-hHHHHHHHcCC-CCC--Cch
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELI-SLEDVMEELGL-GPN--GGL   74 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-----~~~~~~y~~~~~v~e~i-~~~~~l~~~~L-~~~--~~~   74 (247)
                      -++|+|++|||||||++.+.+.+.+ .| +.+.|.-.     ......+    .+.+.. ..+..+...+. +..  +..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~   75 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY   75 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence            4789999999999999999887765 34 23232211     0111111    111100 00111222222 111  111


Q ss_pred             hhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        75 ~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ....+.+ ......+++....  +|+++++|||+.++... ..+. +.+..+.+.+.+++++
T Consensus        76 ~~~lsgl-e~~~~~l~~~~l~--~~~~lllDE~~~~e~~~-~~~~-~~l~~~~~~~~~~i~v  132 (174)
T PRK13695         76 VVNLEDL-ERIGIPALERALE--EADVIIIDEIGKMELKS-PKFV-KAVEEVLDSEKPVIAT  132 (174)
T ss_pred             EEehHHH-HHHHHHHHHhccC--CCCEEEEECCCcchhhh-HHHH-HHHHHHHhCCCeEEEE
Confidence            1111111 1111344444455  89999999987665554 3344 5666655667777666

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.81  E-value=1.7e-08  Score=100.57  Aligned_cols=112  Identities=15%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeccCCCCC--CCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~g~d~~~~--~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      +++|.|||++||||++|.+... +-+..|-.     -|+.+  .+++..      .+     +.  .++...........
T Consensus       329 ~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~------~i-----~~--~ig~~~si~~~lSt  390 (782)
T PRK00409        329 VLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK------EI-----FA--DIGDEQSIEQSLST  390 (782)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc------eE-----EE--ecCCccchhhchhH
Confidence            5789999999999999999643 22222311     12221  233321      11     00  12222112222345


Q ss_pred             hhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        81 l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ++.+++  ..+++++ .  +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus       391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit  446 (782)
T PRK00409        391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT  446 (782)
T ss_pred             HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            556553  3444444 4  899999999999 999988888757888887667666554

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.78  E-value=1.9e-07  Score=83.90  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=35.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+++++|||||||||++..|++++.+.+++|.+.+.|+
T Consensus       115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~  152 (318)
T PRK10416        115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT  152 (318)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            68899999999999999999999999889999998886

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.78  E-value=1.4e-08  Score=103.21  Aligned_cols=129  Identities=18%  Similarity=0.233  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeccCCCC----CCCCC-------CcccChhhhHh-----------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~---~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      .+.++||+|||||||+++++|-+..   ..|+|.++|.+...    ....|       .+.+||++.+.           
T Consensus       143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r  222 (1391)
T KOG0065|consen  143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR  222 (1391)
T ss_pred             eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence            4679999999999999999997653   24689999976532    12223       23556666553           


Q ss_pred             -------------HHHHHHHcCCCCCCchhhhH---HhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           59 -------------LEDVMEELGLGPNGGLIYCM---EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~~~~~~~---~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                                   .+.+++.+||..-.+-...-   .-.++|.+  +.++..++.  +++++..||+|. ||..+.-++.
T Consensus       223 ~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal~ii  300 (1391)
T KOG0065|consen  223 YDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAFQII  300 (1391)
T ss_pred             cccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHHHHH
Confidence                         45788899997643322221   12333333  888888888  999999999999 9999999999


Q ss_pred             HHHHHHHHhC-CCeEEE
Q 025844          120 RNFVDHLKSR-NFNVCA  135 (247)
Q Consensus       120 ~~ll~~l~~~-~~~ii~  135 (247)
                       +.++++.+. +.+.++
T Consensus       301 -k~lr~~a~~~~~t~~v  316 (1391)
T KOG0065|consen  301 -KALRQLAHITGATALV  316 (1391)
T ss_pred             -HHHHHHHhhhcceEEE
Confidence             888888764 445433

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.77  E-value=6e-08  Score=81.38  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=59.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .++|.||+||||||+++.+.+.+.+. .|.|...+.++.   ......   +.      .......+..          .
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E---~~~~~~---~~------~i~q~~vg~~----------~   60 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE---FVHESK---RS------LINQREVGLD----------T   60 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc---ccccCc---cc------eeeecccCCC----------c
Confidence            57899999999999999999888754 567666543321   111100   00      0111111111          0


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..+..++++++..  +|+++++|||.  |.....    ..++ ....|..++.+
T Consensus        61 ~~~~~~i~~aLr~--~pd~ii~gEir--d~e~~~----~~l~-~a~~G~~v~~t  105 (198)
T cd01131          61 LSFENALKAALRQ--DPDVILVGEMR--DLETIR----LALT-AAETGHLVMST  105 (198)
T ss_pred             cCHHHHHHHHhcC--CcCEEEEcCCC--CHHHHH----HHHH-HHHcCCEEEEE
Confidence            1233667888888  99999999997  333222    3333 33567766444

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.74  E-value=1.2e-07  Score=92.61  Aligned_cols=60  Identities=20%  Similarity=0.232  Sum_probs=47.5

Q ss_pred             hhhhh--HHHHHHHHhhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE-Eecc
Q 025844           80 HLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLD  140 (247)
Q Consensus        80 ~l~~~--~~~~la~al~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~d  140 (247)
                      .+++|  +|+-||..|... ....++||||||. |-..-.+.++ +.+++|...|.||+++ |-+|
T Consensus       822 TLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLd  886 (935)
T COG0178         822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLD  886 (935)
T ss_pred             cccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccc
Confidence            45544  568899999861 1238999999999 9999999999 9999998889999887 4444

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.74  E-value=5.4e-08  Score=82.98  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=63.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCC-CCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +++|.||||+||||+++.+++..-. ..|-.     -|+. -.+++.      +.+     +..++-..+  .......+
T Consensus        32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-----vpa~~~~i~~~------~~i-----~~~~~~~d~--~~~~~StF   93 (218)
T cd03286          32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-----VPAKSMRLSLV------DRI-----FTRIGARDD--IMKGESTF   93 (218)
T ss_pred             EEEEECCCCCchHHHHHHHHHHHHHHHcCCc-----cCccccEeccc------cEE-----EEecCcccc--cccCcchH
Confidence            5789999999999999999986321 11210     1111 111111      000     000111000  00001223


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      ...+ ..+++.+....+|+++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus        94 ~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~  149 (218)
T cd03286          94 MVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS  149 (218)
T ss_pred             HHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            3333 33343443333899999999998 99998888886668888764 6666544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.74  E-value=8.8e-08  Score=78.65  Aligned_cols=39  Identities=10%  Similarity=0.050  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCc-cc---HHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844           98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        98 ~p~~lilDEPt~-LD---~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      +|+++++|||+. +|   ......+. ++++.+++.|.+++++.
T Consensus        95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v~  137 (187)
T cd01124          95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLTS  137 (187)
T ss_pred             CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence            899999999999 88   65555555 78888877788877663

A related protein is found in archaea.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.72  E-value=1.4e-07  Score=99.84  Aligned_cols=73  Identities=16%  Similarity=0.085  Sum_probs=53.8

Q ss_pred             HHHHHcCCCCC-CchhhhHHhhhhh--HHHHHHHHhhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           61 DVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        61 ~~l~~~~L~~~-~~~~~~~~~l~~~--~~~~la~al~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      +.|..+|||-. .++.  ...+++|  +|+.||..|..- ..+.+++|||||. |++...+.++ .++++|...|.||++
T Consensus      1681 ~~L~~vGLgYl~LGq~--~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tviv 1757 (1809)
T PRK00635       1681 QALIDNGLGYLPLGQN--LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIY 1757 (1809)
T ss_pred             HHHHHcCCCeeeCCCc--CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEE
Confidence            45556677642 1111  2345554  568899888751 1368999999999 9999999999 999999888999987


Q ss_pred             E
Q 025844          136 V  136 (247)
Q Consensus       136 v  136 (247)
                      |
T Consensus      1758 i 1758 (1809)
T PRK00635       1758 I 1758 (1809)
T ss_pred             E
Confidence            7

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.69  E-value=3.6e-08  Score=86.59  Aligned_cols=46  Identities=15%  Similarity=0.105  Sum_probs=33.6

Q ss_pred             HHhhhhhHH--HHHHHHhh---------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           78 MEHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        78 ~~~l~~~~~--~~la~al~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      .+.++.+++  ..+|++++         .  +|+++++|||++ ||+..+..+. +.+.++
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~--~~~illlDEp~a~LD~~~~~~l~-~~l~~~  238 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSG--EYPVLLLDDVLAELDLGRQAALL-DAIEGR  238 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhC--CCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence            344555554  66777664         5  899999999999 9999987776 555543

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.68  E-value=6.6e-08  Score=86.54  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      ..++|+||+|||||||++++++++++..|.+.+.
T Consensus       145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie  178 (308)
T TIGR02788       145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE  178 (308)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence            4689999999999999999999999988877764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.66  E-value=2.7e-07  Score=70.35  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      -.+.|+||+||||||+++.+++.+......+.+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~   36 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI   36 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence            4678999999999999999999988765234433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.65  E-value=9.9e-09  Score=86.35  Aligned_cols=122  Identities=26%  Similarity=0.342  Sum_probs=83.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-----CcccChhhhHhHHHHHHHcCCCCCCchhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC   77 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-----~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~   77 (247)
                      +-++++|+.|||||||++.+.+...+......+.+..++.....+     .+..|++....++.++..+..++++.....
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            678999999999999999999998887666666655555433333     345577777788889999999888765433


Q ss_pred             HHhhhhh----HHHHHHHHhhcCCC-CCEEEEeCCCcccHHhHHHHHHHHHHHH
Q 025844           78 MEHLEDN----LDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL  126 (247)
Q Consensus        78 ~~~l~~~----~~~~la~al~~~~~-p~~lilDEPt~LD~~~~~~~~~~ll~~l  126 (247)
                      .......    ...|... +... . +++.+++-|.+.|.+........+.+.+
T Consensus        86 d~~~~~~~~~~~~~~~~~-l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~  137 (219)
T COG1100          86 DSTLRESSDELTEEWLEE-LREL-APDDVPILLVGNKIDLFDEQSSSEEILNQL  137 (219)
T ss_pred             ecccchhhhHHHHHHHHH-HHHh-CCCCceEEEEecccccccchhHHHHHHhhh
Confidence            2221111    1144433 3331 3 3799999999999988877663444444

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.62  E-value=2e-07  Score=87.07  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      -.++|+|+||+|||||+++|+|+.+++.|.+.+.|...
T Consensus       159 q~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg  196 (438)
T PRK07721        159 QRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG  196 (438)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence            35799999999999999999999999999999887654

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.61  E-value=3.3e-08  Score=87.66  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=34.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeccCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP   40 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i~g~d~   40 (247)
                      ++++||.|||||||||++++|.+++.  +.+|+|.+.+.|.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~  102 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG  102 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            58999999999999999999999997  7788998887764

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.58  E-value=2.2e-06  Score=77.56  Aligned_cols=102  Identities=17%  Similarity=0.118  Sum_probs=58.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +++++++||||+||||++..++..+...+.+|.+.+-|+.+          ....-.+..+.+.+|+.-..... ..+ .
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R----------~~a~eqL~~~a~~lgv~v~~~~~-g~d-p  207 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR----------AGAIEQLEEHAERLGVKVIKHKY-GAD-P  207 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc----------HHHHHHHHHHHHHcCCceecccC-CCC-H
Confidence            36899999999999999999999888776788877655321          00111133445555543211000 000 0


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCcc--cHHhHHH
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVP  117 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~L--D~~~~~~  117 (247)
                      ..-...++..+-..  +.+++|+|+|+.+  |.....+
T Consensus       208 ~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~e  243 (336)
T PRK14974        208 AAVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDE  243 (336)
T ss_pred             HHHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHH
Confidence            00011222223334  6789999999974  4444433

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.58  E-value=5.4e-06  Score=65.59  Aligned_cols=20  Identities=25%  Similarity=0.322  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025844            5 QLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ++++|++|||||||++.+.+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            68999999999999999994

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04163 Era Era subfamily

Probab=98.58  E-value=6.6e-06  Score=64.84  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ..++++|+.|||||||++.+.|.
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999874

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.56  E-value=1.5e-07  Score=86.32  Aligned_cols=129  Identities=18%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------CCCCCC--------------Ccc---------cC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY--------------PVA---------MD   52 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------~~~~~y--------------~~~---------~~   52 (247)
                      +.+++|.||-||||-+++++|-++|.-|..- .+.+..        .+-..|              +|.         .+
T Consensus       102 vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k~~  180 (592)
T KOG0063|consen  102 VLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVKGT  180 (592)
T ss_pred             hccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHHHH
Confidence            5689999999999999999999999876531 111100        000011              110         01


Q ss_pred             hhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        53 v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                      +...+.       .+++++.+.|+....+-.......+.++.++|.+...  ..++.+||||.+ ||...+.... ..++
T Consensus       181 v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA-~~IR  257 (592)
T KOG0063|consen  181 VGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAA-ITIR  257 (592)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHH-HHHH
Confidence            222221       4556666666543333221112223345778888888  999999999999 9999888877 8888


Q ss_pred             HHHhCCCeEEEE
Q 025844          125 HLKSRNFNVCAV  136 (247)
Q Consensus       125 ~l~~~~~~ii~v  136 (247)
                      .+...+.-+++|
T Consensus       258 sl~~p~~YiIVV  269 (592)
T KOG0063|consen  258 SLINPDRYIIVV  269 (592)
T ss_pred             HhhCCCCeEEEE
Confidence            886544444444

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.53  E-value=3.8e-06  Score=70.50  Aligned_cols=30  Identities=23%  Similarity=0.234  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-cCCCceE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTM   33 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v   33 (247)
                      .++|+|++|+|||||+++|+|.. ....+++
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~   32 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEEL   32 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeE
Confidence            57999999999999999999884 3334444

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.53  E-value=2.3e-07  Score=77.76  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             hhhHH--HHHHHHhhcCCCC-CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           82 EDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        82 ~~~~~--~~la~al~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.|.+  ..+...+...... .++++|||-+ |.|..++.++ ++++.+.+.+..++++
T Consensus       238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Qviit  295 (303)
T PF13304_consen  238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIIT  295 (303)
T ss_dssp             -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred             CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEe
Confidence            55544  2455555552233 8999999998 9999999998 8887775545566544

>cd01898 Obg Obg subfamily

Probab=98.53  E-value=2.4e-06  Score=68.54  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++++|++|||||||++.+.|.
T Consensus         3 v~ivG~~~~GKStl~~~l~~~   23 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNA   23 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999863

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd00880 Era_like Era (E

Probab=98.52  E-value=1.4e-06  Score=67.66  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=39.9

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeeccccc
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  177 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl  177 (247)
                      ..++.+.|.|+.-+..............+.+. ... +++.+|...........     ..........|.+-|+||+|+
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~-~d~-il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~  116 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLER-ADL-ILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL  116 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHh-CCE-EEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence            46799999999744333222111233333222 112 22234444332222211     233344578899999999999


Q ss_pred             ccch
Q 025844          178 VTNK  181 (247)
Q Consensus       178 l~~~  181 (247)
                      ....
T Consensus       117 ~~~~  120 (163)
T cd00880         117 LPEE  120 (163)
T ss_pred             CChh
Confidence            7654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00089 era GTPase Era; Reviewed

Probab=98.52  E-value=7.6e-06  Score=72.35  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -.++|+|++|||||||++.+.|.
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~   28 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQ   28 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999873

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.52  E-value=8.3e-07  Score=80.65  Aligned_cols=103  Identities=21%  Similarity=0.164  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      -.+.|.||+||||||+++.+.+.+.. .++.|.....++..   .++....   .+      .....+..          
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---~~~~~~~---~i------~q~evg~~----------  180 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---VHRNKRS---LI------NQREVGLD----------  180 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---hccCccc---eE------EccccCCC----------
Confidence            35789999999999999999997764 46777666432210   0100000   00      00011110          


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ...+..+++.++-.  +|+++++||+.  |..+....+    +. ...|..++.+
T Consensus       181 ~~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~l----~a-a~tGh~v~~T  226 (343)
T TIGR01420       181 TLSFANALRAALRE--DPDVILIGEMR--DLETVELAL----TA-AETGHLVFGT  226 (343)
T ss_pred             CcCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHHH----HH-HHcCCcEEEE
Confidence            01233567778878  99999999997  655543323    32 3567776554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.51  E-value=6.5e-07  Score=72.10  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=17.7

Q ss_pred             EEcCCCCcHHHHHHHHHhC
Q 025844            7 VIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         7 iiGpnGSGKSTLl~~l~g~   25 (247)
                      |+|++|||||||++.++|.
T Consensus         1 iiG~~~~GKStll~~l~~~   19 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNA   19 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcC
Confidence            5899999999999999985

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.51  E-value=8.6e-08  Score=82.10  Aligned_cols=37  Identities=27%  Similarity=0.250  Sum_probs=32.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE-ecc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNL   38 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i-~g~   38 (247)
                      +++++|.||||||||||++.|++.+++.+|.+.+ ...
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~   70 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPM   70 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEec
Confidence            4789999999999999999999999999998655 443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.49  E-value=2.2e-06  Score=69.90  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=32.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      |++++.||+||||||++..++..+...+.++.+.+.|+
T Consensus         1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~   38 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT   38 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            57899999999999999999988776666788887775

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.49  E-value=1.3e-06  Score=74.94  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCcCCCceEEEecc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v~i~g~   38 (247)
                      .++.|.|++|||||||+..++ +.++ .++.+.+...
T Consensus        26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~   61 (234)
T PRK06067         26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT   61 (234)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence            578899999999999999884 4333 4667777765

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.48  E-value=1.5e-07  Score=78.08  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      ..++|+|||||||||++++++|+++++.|.+.+.+
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied   60 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED   60 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence            46899999999999999999999999999888754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.48  E-value=6.8e-07  Score=77.70  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G   31 (247)
                      .++|+||+|+|||||++.+++.+....+
T Consensus        18 r~~I~G~~G~GKTTLlr~I~n~l~~~~f   45 (249)
T cd01128          18 RGLIVAPPKAGKTTLLQSIANAITKNHP   45 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccccccC
Confidence            5789999999999999999998877543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.48  E-value=9.8e-07  Score=74.03  Aligned_cols=110  Identities=16%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +.+++++||+|+||||.+--|+..+...+.+|.+...|..+          +.-.-.++.+.+.+|+.-......  +..
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----------~ga~eQL~~~a~~l~vp~~~~~~~--~~~   68 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----------IGAVEQLKTYAEILGVPFYVARTE--SDP   68 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----------THHHHHHHHHHHHHTEEEEESSTT--SCH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----------ccHHHHHHHHHHHhccccchhhcc--hhh
Confidence            46899999999999999988888877666678777665422          111112444555666542110000  000


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l  126 (247)
                      .+-.+.++...-..  +-+++++|.|+-  -|.....++. ++++..
T Consensus        69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~  112 (196)
T PF00448_consen   69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEAL  112 (196)
T ss_dssp             HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhc
Confidence            00011222222223  578999999994  6666555554 666655

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.45  E-value=1.9e-05  Score=64.97  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .-++|+|++|+|||||++.+++
T Consensus        25 ~~v~ivG~~~~GKSsli~~l~~   46 (196)
T PRK00454         25 PEIAFAGRSNVGKSSLINALTN   46 (196)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhC
Confidence            3589999999999999999997

>smart00053 DYNc Dynamin, GTPase

Probab=98.45  E-value=3.7e-06  Score=72.66  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC--CcCCCceEE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH   34 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~   34 (247)
                      .++|+|++||||||++++++|.  .+...|.+.
T Consensus        28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t   60 (240)
T smart00053       28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT   60 (240)
T ss_pred             eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence            4789999999999999999998  555566554

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.45  E-value=3.8e-06  Score=82.91  Aligned_cols=91  Identities=20%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      -+++++||||+||||++..|++.+....|  +|.+...|...  ++      ..+  .+..+.+.+++......      
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--ig------A~e--QL~~~a~~~gvpv~~~~------  249 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--IG------ALE--QLRIYGRILGVPVHAVK------  249 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--hH------HHH--HHHHHHHhCCCCccccC------
Confidence            47899999999999999999999865554  67777666421  11      112  13345555555332110      


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF  113 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~  113 (247)
                      -...+    ..++....+-+++|+|.|+-  -|..
T Consensus       250 ~~~~l----~~al~~~~~~D~VLIDTAGRs~~d~~  280 (767)
T PRK14723        250 DAADL----RFALAALGDKHLVLIDTVGMSQRDRN  280 (767)
T ss_pred             CHHHH----HHHHHHhcCCCEEEEeCCCCCccCHH
Confidence            01112    22222222669999999994  5543

>TIGR00436 era GTP-binding protein Era

Probab=98.44  E-value=7.1e-06  Score=71.95  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .++|+|++|+|||||++.+.|-
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~   23 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ   23 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999974

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.41  E-value=2.7e-07  Score=69.86  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      -+++|+||+|||||||++++.      +|++.++|.|.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di   47 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI------KRKHRLVGDDN   47 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence            468999999999999999986      78999999775

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK09866 hypothetical protein; Provisional

Probab=98.39  E-value=3e-05  Score=74.98  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++++|+|++|||||||++++.|..
T Consensus        70 ~~valvG~sgaGKSTLiNaL~G~~   93 (741)
T PRK09866         70 MVLAIVGTMKAGKSTTINAIVGTE   93 (741)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCc
Confidence            678999999999999999999964

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.38  E-value=1.7e-06  Score=66.61  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      .+.|.||+|+||||+++.++..+...+..+.+.
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            578999999999999999999876444445444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.38  E-value=2.1e-07  Score=79.38  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLD   39 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d   39 (247)
                      ++||.||||||||||++.|++.+.+  .++++.+..+|
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D   38 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD   38 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence            5799999999999999999999975  56777775443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.37  E-value=6.1e-06  Score=72.66  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .+++++||+|+||||++..++..+...+.+|.+...|+.+          ....-.+..+.+..++.-..... ..+ ..
T Consensus        73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~~-~~d-p~  140 (272)
T TIGR00064        73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQKE-GAD-PA  140 (272)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCCC-CCC-HH
Confidence            5788999999999999999999888777789998877621          11112344455555543110000 000 00


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l  126 (247)
                      ......+..+...  +-+++|+|.|+.  -|.....++. .+.+..
T Consensus       141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~~  183 (272)
T TIGR00064       141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRVI  183 (272)
T ss_pred             HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHHH
Confidence            1000223333445  789999999996  4544443333 444433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.37  E-value=2.3e-06  Score=67.95  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|||||||++.+.+.
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999999843

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.36  E-value=2.8e-06  Score=68.76  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ++.|+|++|||||||++.+.+..+
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~~   25 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQH   25 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhccc
Confidence            467999999999999999887643

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.36  E-value=3.6e-07  Score=85.47  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPA   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~   41 (247)
                      -+++|+||+|||||||++  .|+.+|++| +|.++|.+..
T Consensus        33 Eiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        33 SLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF   70 (504)
T ss_pred             CEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence            478999999999999999  788888888 7999997763

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.35  E-value=4.1e-06  Score=77.01  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=31.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+++++|||||||||++..|++.+...+.+|.+...|+
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt  279 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH  279 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence            47899999999999999999998765555777776664

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.34  E-value=1.1e-06  Score=72.64  Aligned_cols=111  Identities=18%  Similarity=0.423  Sum_probs=59.3

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeeccccc
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  177 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl  177 (247)
                      ...+-++|.||..|.      .......+...+..+++   +|+..-..+..     .-........+.|.+-|+||+|+
T Consensus        69 ~~~i~~iDtPG~~~f------~~~~~~~~~~~D~ailv---Vda~~g~~~~~-----~~~l~~~~~~~~p~ivvlNK~D~  134 (188)
T PF00009_consen   69 NRKITLIDTPGHEDF------IKEMIRGLRQADIAILV---VDANDGIQPQT-----EEHLKILRELGIPIIVVLNKMDL  134 (188)
T ss_dssp             SEEEEEEEESSSHHH------HHHHHHHHTTSSEEEEE---EETTTBSTHHH-----HHHHHHHHHTT-SEEEEEETCTS
T ss_pred             ccceeecccccccce------eecccceecccccceee---eeccccccccc-----ccccccccccccceEEeeeeccc
Confidence            567999999997542      22444455444544433   44432222211     12233345678899999999999


Q ss_pred             ccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhc--CCeeeEEeeccChH---HHHHHhhh
Q 025844          178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKES---RLLSQIMK  243 (247)
Q Consensus       178 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~---~l~~~id~  243 (247)
                      +..+  +++.                   ..++...+.+-...-  ..+.+.|.|..+.+   .|+..+++
T Consensus       135 ~~~~--~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~  184 (188)
T PF00009_consen  135 IEKE--LEEI-------------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE  184 (188)
T ss_dssp             SHHH--HHHH-------------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             hhhh--HHHH-------------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence            8222  2211                   112222222222211  35789999998777   56665543

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.33  E-value=5.5e-06  Score=71.30  Aligned_cols=38  Identities=16%  Similarity=0.099  Sum_probs=29.0

Q ss_pred             CCCEEEEeCCCc-------ccHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 025844           98 DDDYLVFDCPGQ-------IELFTHVPVLRNFVDHLKS-RNFNVCAVY  137 (247)
Q Consensus        98 ~p~~lilDEPt~-------LD~~~~~~~~~~ll~~l~~-~~~~ii~v~  137 (247)
                      +|+++++| |.+       .|......++ +.+.++.+ .|.+++++|
T Consensus       111 ~~~lvviD-pl~~~~~~~~~d~~~~~~~~-~~L~~~a~~~g~avl~v~  156 (239)
T cd01125         111 RIDLVVID-PLVSFHGVSENDNGAMDAVI-KALRRIAAQTGAAILLVH  156 (239)
T ss_pred             CCCEEEEC-ChHHhCCCCcCCHHHHHHHH-HHHHHHHHHhCCEEEEEe
Confidence            89999999 753       5787777777 66666654 588888886

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.31  E-value=1.6e-05  Score=69.07  Aligned_cols=96  Identities=24%  Similarity=0.328  Sum_probs=55.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~   83 (247)
                      .++|.||+||||||+++.+.+.+++.  .+.+....        .+..+..+.  ...+...+|+.+.+...   .....
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~~~---~~~~~  109 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGRDK---AALLR  109 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCCCH---HHHHH
Confidence            57899999999999999999988753  33322211        111233333  34566777776543221   11222


Q ss_pred             hHHHHHHHHh-hcCCCCCEEEEeCCCcccHHhHH
Q 025844           84 NLDDWLAEEL-DNYLDDDYLVFDCPGQIELFTHV  116 (247)
Q Consensus        84 ~~~~~la~al-~~~~~p~~lilDEPt~LD~~~~~  116 (247)
                      .+...+.... ..  ++.++++||.-.++.....
T Consensus       110 ~l~~~l~~~~~~~--~~~vliiDe~~~l~~~~~~  141 (269)
T TIGR03015       110 ELEDFLIEQFAAG--KRALLVVDEAQNLTPELLE  141 (269)
T ss_pred             HHHHHHHHHHhCC--CCeEEEEECcccCCHHHHH
Confidence            2323332222 33  6779999996668876543

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.30  E-value=2.8e-05  Score=60.27  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++++|+.|||||||++.+.+-.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            457899999999999999998753

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.30  E-value=8.5e-06  Score=74.69  Aligned_cols=91  Identities=19%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      .+++++||||+||||++..|++.+....|  +|.+...|...        ....|.  +..+.+.+|+.-...      .
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~Eq--L~~~a~~~gv~~~~~------~  201 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQ--LRIFGKILGVPVHAV------K  201 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHH--HHHHHHHcCCceEec------C
Confidence            47889999999999999999987543323  56666544321        011222  233444455432110      0


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF  113 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~  113 (247)
                      -...+    ..++..+.+.+++|+|+|+-  .|..
T Consensus       202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~  232 (374)
T PRK14722        202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRT  232 (374)
T ss_pred             CcccH----HHHHHHhcCCCEEEEcCCCCCcccHH
Confidence            01112    22333222789999999984  6665

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.30  E-value=5.7e-06  Score=77.22  Aligned_cols=101  Identities=19%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-C-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-T-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      .+++++||+|+||||++..|+..+. . .+.+|.+...|+..  .+      ..+  .+..+.+.+++......      
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r--~~------a~e--qL~~~a~~~~vp~~~~~------  285 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR--IG------AVE--QLKTYAKIMGIPVEVVY------  285 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH--HH------HHH--HHHHHHHHhCCceEccC------
Confidence            3789999999999999999998775 2 34478888766521  00      001  12333444454321100      


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVD  124 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~  124 (247)
                      -.    ..++.++....+.+++|+|.|+.  .|......+. .+++
T Consensus       286 ~~----~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~-~ll~  326 (424)
T PRK05703        286 DP----KELAKALEQLRDCDVILIDTAGRSQRDKRLIEELK-ALIE  326 (424)
T ss_pred             CH----HhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHH-HHHh
Confidence            01    11222332222789999999985  7776655554 5555

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.29  E-value=8.4e-06  Score=65.25  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCc
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ++++|++|||||||++.+.+...
T Consensus         2 i~~vG~~~~GKstLi~~l~~~~~   24 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFS   24 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhhcc
Confidence            68999999999999999988543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.29  E-value=5.8e-07  Score=74.99  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      +++|.||+|||||||++.|++++  .+|.+.+.+.|
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D   34 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD   34 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            47999999999999999999998  45677777765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.28  E-value=1.3e-06  Score=66.34  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++|+|+.|||||||++.|+|.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999973

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.27  E-value=5.4e-06  Score=77.23  Aligned_cols=98  Identities=14%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh-hh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH-LE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~-l~   82 (247)
                      .++|+|++|+|||||++++++..+++.|.+...|...          .++++++  ++.+..-++...--.....+. ..
T Consensus       158 ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg----------~ev~e~~--~~~l~~~gl~~tvvv~~tsd~s~~  225 (432)
T PRK06793        158 KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG----------REVKDFI--RKELGEEGMRKSVVVVATSDESHL  225 (432)
T ss_pred             EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc----------ccHHHHH--HHHhhhcccceeEEEEECCCCCHH
Confidence            5789999999999999999999999988887776543          1344432  223333333211000000010 00


Q ss_pred             hhHH-----HHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844           83 DNLD-----DWLAEELDNYLDDDYLVFDCPGQ-IELF  113 (247)
Q Consensus        83 ~~~~-----~~la~al~~~~~p~~lilDEPt~-LD~~  113 (247)
                      ...+     ..+|.-+....++-++++|+||. .|+.
T Consensus       226 ~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~  262 (432)
T PRK06793        226 MQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR  262 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence            1111     33444444334788999999999 8886

>TIGR00235 udk uridine kinase

Probab=98.27  E-value=6.8e-07  Score=75.28  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      .+++|+||||||||||++.|++++++  +.+.+...|
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D   41 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD   41 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence            68999999999999999999999876  445444443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01895 EngA2 EngA2 subfamily

Probab=98.27  E-value=2.8e-05  Score=61.88  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .-++++|+.|+|||||++.+.+-
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCc
Confidence            46899999999999999999864

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00157 Rho Rho (Ras homology) family

Probab=98.26  E-value=6.5e-06  Score=65.97  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++++|++|||||||++.+.+.-
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~~   24 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTGK   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36899999999999999998753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.25  E-value=2.9e-05  Score=65.06  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++++|..|+|||||+..|.+..
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~   26 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVL   26 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999998754

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.25  E-value=2.2e-05  Score=63.75  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETV   29 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~   29 (247)
                      ++|+|+.|||||||++.+.+...+.
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~~   26 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDI   26 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCCC
Confidence            6899999999999999999875543

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.22  E-value=3e-06  Score=68.41  Aligned_cols=122  Identities=20%  Similarity=0.298  Sum_probs=66.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-----CCCCCCCCCcccChhhhHh-HHHHHHHcCC-----C
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAAENFDYPVAMDIRELIS-LEDVMEELGL-----G   69 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-----~~~~~~~y~~~~~v~e~i~-~~~~l~~~~L-----~   69 (247)
                      |.+-++|.||+|+||||+++-++..++..+  ..+.|.-     -....++|    ++.+.-+ =+.++...+.     |
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF----~Ivdl~tg~~~~la~~~~~~~rvG   77 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGF----KIVDLATGEEGILARVGFSRPRVG   77 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeee----EEEEccCCceEEEEEcCCCCcccc
Confidence            356689999999999999999998887652  2223310     01122233    1111110 0012222222     2


Q ss_pred             CCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .++-.   .+.+..-..-+|.+|+.   .+|++|.||-+-++..+. .+. +.+++..+.+..++++
T Consensus        78 kY~V~---v~~le~i~~~al~rA~~---~aDvIIIDEIGpMElks~-~f~-~~ve~vl~~~kpliat  136 (179)
T COG1618          78 KYGVN---VEGLEEIAIPALRRALE---EADVIIIDEIGPMELKSK-KFR-EAVEEVLKSGKPLIAT  136 (179)
T ss_pred             eEEee---HHHHHHHhHHHHHHHhh---cCCEEEEecccchhhccH-HHH-HHHHHHhcCCCcEEEE
Confidence            11111   11111112245555553   579999999999999864 555 6777765666666555

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.21  E-value=1.7e-05  Score=74.93  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=52.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      .+++++||||+||||++..|++.+....|  +|.+...|+.        .+...+++  ..+.+.+|+.....       
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~--------RigA~EQL--r~~AeilGVpv~~~-------  319 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY--------RIGGHEQL--RIYGKILGVPVHAV-------  319 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc--------chhHHHHH--HHHHHHhCCCeecc-------
Confidence            57899999999999999999999876655  5666655541        12344433  33445555432210       


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~  109 (247)
                       ......+.+  +..+.+.+++++|+++-
T Consensus       320 -~~~~Dl~~a--L~~L~d~d~VLIDTaGr  345 (484)
T PRK06995        320 -KDAADLRLA--LSELRNKHIVLIDTIGM  345 (484)
T ss_pred             -CCchhHHHH--HHhccCCCeEEeCCCCc
Confidence             011112222  22222668899999883

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.21  E-value=1.5e-05  Score=64.41  Aligned_cols=118  Identities=20%  Similarity=0.213  Sum_probs=69.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~   83 (247)
                      -++++|.+-+|||||++.|+|..      ..+.|.          |..|+.-.                         .+
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~------~~v~n~----------pG~Tv~~~-------------------------~g   40 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAK------QKVGNW----------PGTTVEKK-------------------------EG   40 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS------EEEEES----------TTSSSEEE-------------------------EE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC------ceecCC----------CCCCeeee-------------------------eE
Confidence            37899999999999999999964      333332          11121100                         00


Q ss_pred             hHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHH
Q 025844           84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM  161 (247)
Q Consensus        84 ~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~  161 (247)
                      .+       -..  +.++.+.|-||.  +.+.+..+.+  ..+.+..... =++++++|+..+.       +-+......
T Consensus        41 ~~-------~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~~-D~ii~VvDa~~l~-------r~l~l~~ql  101 (156)
T PF02421_consen   41 IF-------KLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEKP-DLIIVVVDATNLE-------RNLYLTLQL  101 (156)
T ss_dssp             EE-------EET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHHTSS-SEEEEEEEGGGHH-------HHHHHHHHH
T ss_pred             EE-------Eec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhhcCC-CEEEEECCCCCHH-------HHHHHHHHH
Confidence            00       001  567999999984  7766544422  1222333333 3355567877643       233445566


Q ss_pred             hhccCCeeeeecccccccch
Q 025844          162 VQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       162 ~~~~~p~i~vlsk~dll~~~  181 (247)
                      ..++.|.+.|+||+|.+.+.
T Consensus       102 ~e~g~P~vvvlN~~D~a~~~  121 (156)
T PF02421_consen  102 LELGIPVVVVLNKMDEAERK  121 (156)
T ss_dssp             HHTTSSEEEEEETHHHHHHT
T ss_pred             HHcCCCEEEEEeCHHHHHHc
Confidence            67899999999999998765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.21  E-value=3.9e-06  Score=85.05  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=56.5

Q ss_pred             HHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        61 ~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                      +.++.+||+.. ..+.  ...++++.  ++.||++|+.  +|  +++||||||+ ||+.....++ ++++++++.|.+|+
T Consensus       471 ~~L~~vGL~~l~l~r~--~~~LSgGE~QRv~LA~aL~~--~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVI  545 (943)
T PRK00349        471 KFLVDVGLDYLTLSRS--AGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLI  545 (943)
T ss_pred             HHhhccccCCCCCCCc--hhhCCHHHHHHHHHHHHHhh--CCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence            36777888743 2333  34566654  4899999998  76  9999999999 9999999999 99999987788987


Q ss_pred             EE
Q 025844          135 AV  136 (247)
Q Consensus       135 ~v  136 (247)
                      +|
T Consensus       546 vV  547 (943)
T PRK00349        546 VV  547 (943)
T ss_pred             EE
Confidence            77

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.19  E-value=6.5e-06  Score=72.86  Aligned_cols=38  Identities=21%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-C-ceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-R-RTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~-G~v~i~g~d~   40 (247)
                      .+++++||+|+||||++..|+..+... + .+|.+...|+
T Consensus       195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            478999999999999999999988665 3 4788887665

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.19  E-value=1.3e-06  Score=72.34  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      |.-+++|+|||||||||+++.|++...+   .+.+.+
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~   34 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAH   34 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcC
Confidence            5567899999999999999999998765   355444

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.19  E-value=1.2e-05  Score=61.57  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.9

Q ss_pred             EEcCCCCcHHHHHHHHHhCCc
Q 025844            7 VIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         7 iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      |+|+.|||||||++.+.+...
T Consensus         1 iiG~~~~GKStl~~~l~~~~~   21 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEF   21 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCc
Confidence            589999999999999998755

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.18  E-value=1.9e-05  Score=66.00  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      +-++|+|++|+|||||+++|.|...+..|.+...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~   35 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG   35 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence            4589999999999999999999888777776654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.17  E-value=2.9e-05  Score=78.03  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      .++|+||+|||||||++.+.+.....++++.+.+
T Consensus       448 ~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D  481 (800)
T PRK13898        448 HTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFD  481 (800)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeC
Confidence            3789999999999999999998777777777754

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.17  E-value=2.1e-06  Score=72.32  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      +.+++|.|++|||||||++.|++.+.  .+.+.+.+.|.
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~   42 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDS   42 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCc
Confidence            47899999999999999999999883  45676666654

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.16  E-value=2.7e-06  Score=85.77  Aligned_cols=111  Identities=14%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEeccCCCC-CCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v~i~g~d~~~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      ++.|.|||++||||++|.++-.. -++-|...     |+. ..+++           ++.++-++|-..+..  .....+
T Consensus       609 ~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~V-----Pa~~a~i~~-----------~d~I~triga~d~i~--~g~STF  670 (854)
T PRK05399        609 LLLITGPNMAGKSTYMRQVALIVLLAQIGSFV-----PAESARIGI-----------VDRIFTRIGASDDLA--SGRSTF  670 (854)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHHhcCCce-----eccceEecc-----------cCeeeeccCcccccc--cCcccH
Confidence            67899999999999999986431 12223211     111 11221           112223333322211  111233


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      ...+ ..++..+...+++.++|+|||   |+ .|-.+   +...+++.+.+. +.+++++
T Consensus       671 ~~E~-~~~~~il~~at~~sLvllDE~GrGTs~~dg~a---ia~aile~l~~~~~~~~l~a  726 (854)
T PRK05399        671 MVEM-TETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAVAEYLHDKIGAKTLFA  726 (854)
T ss_pred             HHHH-HHHHHHHHhCCCCcEEEEecCCCCCCcchhHH---HHHHHHHHHHhcCCceEEEE
Confidence            3334 555655554448899999999   66 77433   343788888765 3555433

>cd01862 Rab7 Rab7 subfamily

Probab=98.15  E-value=3.1e-05  Score=62.06  Aligned_cols=22  Identities=18%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -++|+|++|||||||++.+.+-
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.15  E-value=5.6e-06  Score=83.78  Aligned_cols=71  Identities=17%  Similarity=0.141  Sum_probs=55.2

Q ss_pred             HHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        61 ~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                      +.+..+||+.. .++.  ...+++|.  ++.||++++.  +|  +++||||||+ ||+.....++ +++++++++|.+|+
T Consensus       469 ~~L~~vgL~~l~l~r~--~~tLSGGE~QRv~LA~aL~~--~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVI  543 (924)
T TIGR00630       469 GFLIDVGLDYLTLSRA--AGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVI  543 (924)
T ss_pred             HhHhhccccccccCCC--cCcCCHHHHHHHHHHHHHhh--CCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence            34667777643 2222  34566654  4899999998  75  8999999999 9999999999 99999987788887


Q ss_pred             EE
Q 025844          135 AV  136 (247)
Q Consensus       135 ~v  136 (247)
                      +|
T Consensus       544 vV  545 (924)
T TIGR00630       544 VV  545 (924)
T ss_pred             EE
Confidence            77

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01878 HflX HflX subfamily

Probab=98.15  E-value=1.5e-05  Score=66.47  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +.++|+|++|||||||++.+++-
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcc
Confidence            57899999999999999999975

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.14  E-value=9.7e-05  Score=63.20  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH-hCCcCCCceE
Q 025844            5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTM   33 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v   33 (247)
                      ++++|++|+|||||++.+. |...+..|..
T Consensus         2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~   31 (224)
T cd04165           2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKA   31 (224)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCcCCCCCeE
Confidence            5789999999999999998 5555544433

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
1yr6_A	262	Pab0955 Crystal Structure : A Gtpase In Apo Form Fr		4e-11

>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From Pyrococcus Abyssi Length = 262

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           + +G AGSGK+T      R+ E   +  + VNLD   +   Y  ++D+RE +++E++M E
Sbjct: 18  VFVGTAGSGKTTLTGEFGRYLEDNYKVAY-VNLDTGVKELPYEPSIDVREFVTVEEIMRE 76
Query: 66  LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
            G GPNG ++   + L +  +++              + D PGQ+E F    +   F   
Sbjct: 77  -GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF----LFHEFGVR 131
Query: 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNI--LSKMDLVTNKK 182
           L         VY+ D + +     +   C     A ++ L L    I  L+K+DL++ ++
Sbjct: 132 LMENLPYPLVVYISDPEILKKPNDY---CFVRFFALLIDLRLGATTIPALNKVDLLSEEE 188
Query: 183 E 183
           +
Sbjct: 189 K 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	3e-68
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	2e-04

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score =  210 bits (535), Expect = 3e-68
 Identities = 52/246 (21%), Positives = 109/246 (44%), Gaps = 16/246 (6%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
              + +G AGSGK+T      R+ E   +    VNLD   +   Y  ++D+RE +++E++
Sbjct: 15  MIVVFVGTAGSGKTTLTGEFGRYLEDNYKV-AYVNLDTGVKELPYEPSIDVREFVTVEEI 73

Query: 63  MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122
           M E G GPNG ++   + L +  +++L + L    ++DY++ D PGQ+E F         
Sbjct: 74  MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 132

Query: 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN-- 180
           +++L         VY+ D + +     +      +L   ++L    +  L+K+DL++   
Sbjct: 133 MENLPYP----LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 188

Query: 181 -KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE-YSMVSFMPLDLRKE---S 235
            ++  + + + +      +L+  M      +   +  ++ E    V  + L  +      
Sbjct: 189 KERHRKYFEDIDYLTARLKLDPSM---QGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245

Query: 236 RLLSQI 241
            L +  
Sbjct: 246 DLETLA 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 71/261 (27%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVA-MDIRELISLEDVME 64
           L+ G  GSGK+     +    +   +              D+ +  ++++   S E V+E
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCK-------------MDFKIFWLNLKNCNSPETVLE 200

Query: 65  ELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQI-ELFTHVP------ 117
            L            + L   +D       D+  +    +     ++  L    P      
Sbjct: 201 ML------------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 118 VLRNFVD--HLKSRNFNV-CAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-----HV 169
           VL N  +     +  FN+ C + LL ++F   VT F+S    +  ++    +        
Sbjct: 249 VLLNVQNAKAWNA--FNLSCKI-LLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 170 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQ----FAKLNKSLIELVDEYSMVS 225
           ++L K            YL+   Q L  E+     P+     A+  +  +   D +  V+
Sbjct: 305 SLLLK------------YLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 226 FMPLDLRKESRLLSQIMKMSY 246
                       L+ I++ S 
Sbjct: 352 CDK---------LTTIIESSL 363

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 15/74 (20%)

Query: 9   GPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------------PAAENFDYPVAMDIRE 55
           G + SGK+T  + L +       ++ + ++D                    Y +  D+  
Sbjct: 29  GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88

Query: 56  LISLEDVMEELGLG 69
           L     +  +L   
Sbjct: 89  LT--HQLFRQLKAS 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.95
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.95
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.95
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.94
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.94
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.94
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.94
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.94
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.94
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.94
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.94
1g6h_A	257	High-affinity branched-chain amino acid transport	99.94
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.94
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.94
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.94
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.93
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.93
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.93
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.93
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.93
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.93
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.92
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.92
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.92
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.91
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.91
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.89
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.89
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.88
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.88
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.87
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.87
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.87
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.86
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.86
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.86
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.86
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.86
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.86
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.85
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.85
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.85
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.84
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.79
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.78
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.78
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.77
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.75
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.75
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.74
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.72
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.71
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.7
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.68
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.67
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.66
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.63
2og2_A	359	Putative signal recognition particle receptor; nuc	99.6
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.58
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.56
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.55
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.55
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.55
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.55
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.55
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.53
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.51
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.5
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.48
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.44
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.43
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.41
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.39
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.38
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.37
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.37
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.37
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.36
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.34
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.32
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.3
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.28
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.28
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.28
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.27
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.27
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.25
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.24
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.24
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.2
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.16
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.11
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.1
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.1
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.09
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.08
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.07
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.06
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.06
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.03
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.02
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.02
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.98
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.96
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.93
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.92
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.9
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.87
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.87
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.86
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.84
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.76
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.76
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.74
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.74
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.74
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.72
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.71
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.66
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.64
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.62
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.62
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.61
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.61
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.61
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.61
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.58
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.58
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.57
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.55
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.55
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.54
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.54
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.54
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.52
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.52
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.51
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.5
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.5
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.49
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.49
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.46
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.46
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.44
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.43
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.42
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.42
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.41
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.38
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.37
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.37
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.36
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.35
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.34
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.33
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.31
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.3
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.29
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.29
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.28
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.27
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.27
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.27
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.26
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.26
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.26
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.25
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.25
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.25
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.25
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.25
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.23
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.22
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.22
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.22
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.21
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.2
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.19
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.19
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.18
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.18
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.17
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.16
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.15
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.14
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.14
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.14
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.12
3bos_A	242	Putative DNA replication factor; P-loop containing	98.1
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.09
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.09
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.06
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.05
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.03
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.03
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.02
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.01
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.99
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.98
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.96
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.95
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.94
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.94
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.93
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.92
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.92
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.9
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.89
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.89
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.89
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.88
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.88
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.88
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.87
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.87
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.86
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.86
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.84
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.83
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.83
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.83
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.82
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.81
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.8
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.79
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.78
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.75
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.74
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.73
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.72
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.71
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.7
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.7
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.7
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.69
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.69
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.68
2xxa_A	433	Signal recognition particle protein; protein trans	97.66
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.65
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.65
1via_A	175	Shikimate kinase; structural genomics, transferase	97.65
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.63
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.62
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.62
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.61
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.6
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.59
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.59
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.58
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.57
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.57
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.56
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.56
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.56
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.55
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.55
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.55
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.55
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.54
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.53
3co5_A	143	Putative two-component system transcriptional RES	97.53
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.53
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.53
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.52
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.52
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.51
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.51
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.51
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.51
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.5
2qgz_A	308	Helicase loader, putative primosome component; str	97.5
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.5
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.5
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.5
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.49
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.49
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.49
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.48
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.46
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.46
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.45
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.44
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.44
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.44
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.43
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.43
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.43
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.41
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.4
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.4
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.38
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.37
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.36
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.36
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.36
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.36
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.35
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.34
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.33
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.33
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.33
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.31
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.31
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.31
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.3
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.3
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.29
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.28
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.28
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.28
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.27
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.27
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.26
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.26
3io5_A	333	Recombination and repair protein; storage dimer, i	97.25
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.24
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.24
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.23
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.23
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.22
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.22
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.21
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.21
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.2
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.19
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.19
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.18
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.18
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.16
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.16
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.16
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.15
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.15
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.14
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.14
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.14
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.14
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.13
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.13
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.12
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.11
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.09
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.08
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.08
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.07
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.06
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.05
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.04
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.03
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.03
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.02
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.99
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.99
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.99
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.98
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	96.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.94
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.93
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.93
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.93
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.92
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.92
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.92
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.91
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.91
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.91
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.88
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.87
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.86
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.86
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.86
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.85
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.85
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.83
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.83
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.83
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.82
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.82
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.81
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.79
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.79
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.78
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.77
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.77
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.76
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.76
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.75
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.75
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.75
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.75
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.74
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.73
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.73
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.72
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.72
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.71
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.71
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.7
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.7
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.69
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.69
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.68
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.68
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.68
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.68
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.68
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.67
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.67
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.66
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.66
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.66
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.66
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.65
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.65
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.64
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.64
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.64
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.63
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.63
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.63
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.62
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.62
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.62
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.62
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.61
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.61
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.6
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.58
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.58
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.57
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.57
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.57
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.57
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.55
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.55
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.55
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	96.54
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.54
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.53
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.53
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.53
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.53
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.52
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.52
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.51
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.5
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.49
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.48
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.48
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.47
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.45
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.45
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.44
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.43
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.41
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.41
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.4
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.4
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.39
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.38
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.37
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.37
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.37
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.36
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	96.36
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.34
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.33

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.95  E-value=1.1e-27  Score=216.51  Aligned_cols=146  Identities=13%  Similarity=0.179  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...          ..++|       .+.+||++++.       
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~  134 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  134 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence            4789999999999999999999999999999999987632          22333       45678998874       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++.+||.+......  ..+++|+  +++|||||+.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       135 ~~~~~~~~~v~~lL~~vgL~~~~~~~~--~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l  209 (366)
T 3tui_C          135 TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-ELLKDI  209 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHTCGGGTTCCT--TTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHH
Confidence                     577899999976544442  3567665  4999999999  999999999999 9999999999 999998


Q ss_pred             Hh-CCCeEEEEEecccccccchhHHhhhhHHH
Q 025844          127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMAS  157 (247)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (247)
                      ++ .|.++++|    +|.+.....+|+.+++.
T Consensus       210 ~~~~g~Tii~v----THdl~~~~~~aDrv~vl  237 (366)
T 3tui_C          210 NRRLGLTILLI----THEMDVVKRICDCVAVI  237 (366)
T ss_dssp             HHHSCCEEEEE----ESCHHHHHHHCSEEEEE
T ss_pred             HHhCCCEEEEE----ecCHHHHHHhCCEEEEE
Confidence            65 58898776    47777777777754443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.95  E-value=2.1e-27  Score=203.85  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----CCCCCC-------CcccChhhhHh-------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS-------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----~~~~~y-------~~~~~v~e~i~-------------   58 (247)
                      +++|+||||||||||+|+|+|+++|++|+|.++|.++.     ...++|       .+.+|++|++.             
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~  105 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR  105 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence            68999999999999999999999999999999997652     123444       23467887763             


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (247)
                       ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..++ ++++++++ .|.++
T Consensus       106 ~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tv  180 (240)
T 2onk_A          106 RVREMAEKLGIAHLLDRK--PARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI  180 (240)
T ss_dssp             HHHHHHHTTTCTTTTTCC--GGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred             HHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence             46788899997654444  245777654  899999999  999999999999 9999999998 88888865 48888


Q ss_pred             EEEEecccccccchhHHhh
Q 025844          134 CAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (247)
                      +++    +|.+.+...+++
T Consensus       181 i~v----tHd~~~~~~~~d  195 (240)
T 2onk_A          181 LHV----THDLIEAAMLAD  195 (240)
T ss_dssp             EEE----ESCHHHHHHHCS
T ss_pred             EEE----eCCHHHHHHhCC
Confidence            766    466555555555

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.95  E-value=2.4e-27  Score=202.75  Aligned_cols=129  Identities=18%  Similarity=0.189  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------CCCCCCcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------~~~~y~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...                  |+....+.+|++|++.      
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~  111 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence            4789999999999999999999999999999999976531                  2222234568888763      


Q ss_pred             -------------HHHHHHHcCCCCCC-chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~-~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                   +.++++.+++.+.. ...  ...+++|+  +++||+|++.  +|++||+||||+ ||+.++..++ +
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~-~  186 (235)
T 3tif_A          112 YRGAMSGEERRKRALECLKMAELEERFANHK--PNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIM-Q  186 (235)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-H
T ss_pred             hccCCCHHHHHHHHHHHHHHCCCChhhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence                         45678888886532 222  24567665  4999999999  999999999999 9999999999 9


Q ss_pred             HHHHHHhC-CCeEEEE
Q 025844          122 FVDHLKSR-NFNVCAV  136 (247)
Q Consensus       122 ll~~l~~~-~~~ii~v  136 (247)
                      ++++++++ |.++++|
T Consensus       187 ~l~~l~~~~g~tvi~v  202 (235)
T 3tif_A          187 LLKKLNEEDGKTVVVV  202 (235)
T ss_dssp             HHHHHHHHHCCEEEEE
T ss_pred             HHHHHHHHcCCEEEEE
Confidence            99998654 8888766

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.95  E-value=4.6e-27  Score=204.29  Aligned_cols=141  Identities=19%  Similarity=0.243  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--C-------CCCCC-------CcccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-------PVAMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~-------~~~~y-------~~~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++.  .       +.++|       ++.++++|++.        
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~  130 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK  130 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence            378999999999999999999999999999999997652  0       11222       34567777763        


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++++++
T Consensus       131 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l  205 (263)
T 2olj_A          131 WPREKAEAKAMELLDKVGLKDKAHAY--PDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SVMKQL  205 (263)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     35678889987654433  245776654  899999999  999999999999 9999999998 899998


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +++|.+++++    +|.+.....+++
T Consensus       206 ~~~g~tvi~v----tHd~~~~~~~~d  227 (263)
T 2olj_A          206 ANEGMTMVVV----THEMGFAREVGD  227 (263)
T ss_dssp             HHTTCEEEEE----CSCHHHHHHHCS
T ss_pred             HhCCCEEEEE----cCCHHHHHHhCC
Confidence            7668888666    566665555555

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.95  E-value=3.8e-27  Score=212.76  Aligned_cols=141  Identities=15%  Similarity=0.171  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC----C-----CCCCC-------CCcccChhhhHh--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----A-----AENFD-------YPVAMDIRELIS--------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~----~-----~~~~~-------y~~~~~v~e~i~--------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++    .     ...++       .++.+||+|++.        
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~  110 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG  110 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999999999765    1     12233       345779999874        


Q ss_pred             --------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH-
Q 025844           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL-  126 (247)
Q Consensus        59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l-  126 (247)
                              ++++++.++|.+...+..  ..+++|+  +++|||||+.  +|++|||||||+ ||+..+..+. +.+.++ 
T Consensus       111 ~~~~~~~~v~~~l~~~gL~~~~~r~~--~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~-~~l~~~~  185 (359)
T 3fvq_A          111 RTAQERQRIEAMLELTGISELAGRYP--HELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIR-EDMIAAL  185 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence                    678999999987655543  4577665  4999999999  999999999999 9999999988 555554 


Q ss_pred             HhCCCeEEEEEecccccccchhHHhh
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++.|.++++|    +|.+.+...+++
T Consensus       186 ~~~g~tvi~v----THd~~ea~~~aD  207 (359)
T 3fvq_A          186 RANGKSAVFV----SHDREEALQYAD  207 (359)
T ss_dssp             HHTTCEEEEE----CCCHHHHHHHCS
T ss_pred             HhCCCEEEEE----eCCHHHHHHHCC
Confidence            5568888766    577776666666

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.94  E-value=3.8e-27  Score=214.15  Aligned_cols=141  Identities=16%  Similarity=0.144  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            |+...++.+||+|++.            
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~  109 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  109 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence            3689999999999999999999999999999999976532            3333456789999874            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          ++++++.+++.+...+..  ..+++|+  +++|||||+.  +|++|||||||+ ||+..+..+. ++++++.++ |
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~p--~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~~~~g  184 (381)
T 3rlf_A          110 INQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG  184 (381)
T ss_dssp             HHHHHHHHHHHTTCGGGTTCCG--GGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCchhhcCCh--hHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHhCC
Confidence                578899999987655443  4577665  4999999999  999999999999 9999999998 888888654 8


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++++|    +|.+.+...+++
T Consensus       185 ~tii~v----THd~~ea~~~aD  202 (381)
T 3rlf_A          185 RTMIYV----THDQVEAMTLAD  202 (381)
T ss_dssp             CEEEEE----CSCHHHHHHHCS
T ss_pred             CEEEEE----ECCHHHHHHhCC
Confidence            888766    577776666666

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.94  E-value=1.5e-27  Score=202.58  Aligned_cols=129  Identities=19%  Similarity=0.165  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..           ..++|       .+.++++|++.      
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  110 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM  110 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence            3689999999999999999999999999999999976521           12333       34567887763      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++++++.+++.+......  ..+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~  185 (224)
T 2pcj_A          111 GKPKKEAKERGEYLLSELGLGDKLSRKP--YELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-DIFLK  185 (224)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCTTCTTCCG--GGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      456888999987654442  45777654  899999999  999999999999 9999999998 88999


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      ++++|.+++++
T Consensus       186 l~~~g~tvi~v  196 (224)
T 2pcj_A          186 INEGGTSIVMV  196 (224)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCEEEEE
Confidence            87668888766

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.94  E-value=4.9e-27  Score=205.35  Aligned_cols=141  Identities=13%  Similarity=0.145  Sum_probs=111.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~-------~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...         +.++| +       ...++++++.       
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~  114 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK  114 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999987621         12333 1       1357888764       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++.+++.......  ...+++|++  ++||++++.  +|++|||||||+ ||+.++..++ ++++++
T Consensus       115 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~l~~l  189 (275)
T 3gfo_A          115 LPEDEIRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KLLVEM  189 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence                     56789999997654444  245777654  999999999  999999999999 9999999999 999998


Q ss_pred             H-hCCCeEEEEEecccccccchhHHhh
Q 025844          127 K-SRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~-~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      + ++|.+++++    +|.+.....+++
T Consensus       190 ~~~~g~tvi~v----tHdl~~~~~~~d  212 (275)
T 3gfo_A          190 QKELGITIIIA----THDIDIVPLYCD  212 (275)
T ss_dssp             HHHHCCEEEEE----ESCCSSGGGGCS
T ss_pred             HhhCCCEEEEE----ecCHHHHHHhCC
Confidence            6 458888766    466666666666

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.94  E-value=3.9e-27  Score=204.61  Aligned_cols=141  Identities=18%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------------CCCCC-------CcccChhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-------PVAMDIRE   55 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------------~~~~y-------~~~~~v~e   55 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..                    ..++|       ++.+|+++
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e  112 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  112 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence            3789999999999999999999999999999999976530                    11222       34567877


Q ss_pred             hHh-----------------HHHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHh
Q 025844           56 LIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT  114 (247)
Q Consensus        56 ~i~-----------------~~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~  114 (247)
                      ++.                 ++++++.+++.+. ....  ...+++|+  +++||++++.  +|++|||||||+ ||+.+
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~  188 (262)
T 1b0u_A          113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL  188 (262)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred             HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence            663                 3567888888654 3333  24577765  4999999999  999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       115 ~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      +..+. +++++++++|.+++++    +|.+.....+++
T Consensus       189 ~~~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d  221 (262)
T 1b0u_A          189 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS  221 (262)
T ss_dssp             HHHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCS
T ss_pred             HHHHH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCC
Confidence            99999 8999987668888766    566665555555

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=4.2e-27  Score=203.76  Aligned_cols=141  Identities=16%  Similarity=0.188  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..      ..++|       .+.+|+++++.           
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~  121 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS  121 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence            3789999999999999999999999999999999976531      12333       34568888764           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++++++|
T Consensus       122 ~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g  196 (256)
T 1vpl_A          122 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG  196 (256)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCC
Confidence                 35678889997654433  245676654  899999999  999999999999 9999999998 8899987678


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|.+.....+++
T Consensus       197 ~tiiiv----tHd~~~~~~~~d  214 (256)
T 1vpl_A          197 LTILVS----SHNMLEVEFLCD  214 (256)
T ss_dssp             CEEEEE----ECCHHHHTTTCS
T ss_pred             CEEEEE----cCCHHHHHHHCC
Confidence            888766    355544444444

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=1e-26  Score=199.46  Aligned_cols=141  Identities=15%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..        ..++|       .+.+|++|++.         
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~  112 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK  112 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH
Confidence            3789999999999999999999999999999999976531        12333       33457777763         


Q ss_pred             ------HHHHHHHcC-CCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 ------LEDVMEELG-LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 ------~~~~l~~~~-L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                            ++++++.++ +.......  ...+++|+  +++||++++.  +|+++||||||+ ||+.++..+. ++++++++
T Consensus       113 ~~~~~~~~~~l~~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~  187 (240)
T 1ji0_A          113 EGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ  187 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHhhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence                  455677774 75543333  23466664  4899999999  999999999999 9999999998 88898876


Q ss_pred             CCCeEEEEEecccccccchhHHhh
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .|.+++++    +|...+...+++
T Consensus       188 ~g~tvi~v----tHd~~~~~~~~d  207 (240)
T 1ji0_A          188 EGTTILLV----EQNALGALKVAH  207 (240)
T ss_dssp             TTCCEEEE----ESCHHHHHHHCS
T ss_pred             CCCEEEEE----ecCHHHHHHhCC
Confidence            78888766    466555555555

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.94  E-value=1.4e-26  Score=209.32  Aligned_cols=141  Identities=17%  Similarity=0.152  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            |+..+++.+|+++++.            
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  109 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE  109 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            3689999999999999999999999999999999976521            2223345678888874            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          ++++++.++|.+...+..  ..+++|+  +++||++++.  +|++||||||++ ||+..+..+. +.++++.+ .|
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~~--~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  184 (359)
T 2yyz_A          110 VEKRVVEIARKLLIDNLLDRKP--TQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELG  184 (359)
T ss_dssp             TTHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                567899999987654443  4577765  4999999999  999999999999 9999999988 88888865 48


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++++|    +|...+...+++
T Consensus       185 ~tvi~v----THd~~~~~~~ad  202 (359)
T 2yyz_A          185 ITSVYV----THDQAEAMTMAS  202 (359)
T ss_dssp             CEEEEE----ESCHHHHHHHCS
T ss_pred             CEEEEE----cCCHHHHHHhCC
Confidence            888766    466655555555

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.94  E-value=1.2e-26  Score=209.28  Aligned_cols=141  Identities=17%  Similarity=0.177  Sum_probs=112.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----CCCCCC-------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----~~~~~y-------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+..     ...++|       ++.+|++|++.            
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~  121 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE  121 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            368999999999999999999999999999999997652     122333       45678888874            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          ++++++.+++.+...+..  ..+++|+  +++||+||+.  +|++||||||++ ||+..+..+. ++++++.+ .|
T Consensus       122 ~~~~v~~~l~~~gL~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  196 (355)
T 1z47_A          122 MDARVRELLRFMRLESYANRFP--HELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVHDEMG  196 (355)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhHhcCCc--ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                467888999976654443  4577765  4999999999  999999999999 9999999988 88888865 48


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .++++|    +|...+...+++
T Consensus       197 ~tvi~v----THd~~~a~~~ad  214 (355)
T 1z47_A          197 VTSVFV----THDQEEALEVAD  214 (355)
T ss_dssp             CEEEEE----CSCHHHHHHHCS
T ss_pred             CEEEEE----CCCHHHHHHhCC
Confidence            888766    566666666655

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.94  E-value=1.2e-26  Score=200.93  Aligned_cols=141  Identities=20%  Similarity=0.173  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhH----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELI----------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i----------   57 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..        ..++|       .+.+|++|++          
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~  113 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES  113 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence            4789999999999999999999999999999999976521        12222       2234554443          


Q ss_pred             -------------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844           58 -------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (247)
Q Consensus        58 -------------------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~  115 (247)
                                         .++++++.+|+.+.....  ...+++|++  ++||++++.  +|++|||||||+ ||+.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~  189 (257)
T 1g6h_A          114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA  189 (257)
T ss_dssp             HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred             cccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence                               145678888887554433  245676654  899999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ..++ +++++++++|.+++++    +|.+.....+++
T Consensus       190 ~~l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d  221 (257)
T 1g6h_A          190 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYID  221 (257)
T ss_dssp             HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCS
T ss_pred             HHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            9999 8999987678888766    466665555555

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.94  E-value=1.8e-26  Score=208.82  Aligned_cols=142  Identities=16%  Similarity=0.170  Sum_probs=112.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            |+...++.+|+++++.            
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  109 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE  109 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            3689999999999999999999999999999999976521            2222345678888874            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          ++++++.+++.+...+..  ..+++|+  +++||++++.  +|++||||||++ ||+..+..+. +.++++.+ .|
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  184 (362)
T 2it1_A          110 IDKKVREVAKMLHIDKLLNRYP--WQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQKELG  184 (362)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCchHhhCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhCC
Confidence                467889999987655543  4577765  4999999999  999999999999 9999999988 88888865 48


Q ss_pred             CeEEEEEecccccccchhHHhhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      .++++|    +|...+...+++.
T Consensus       185 ~tvi~v----THd~~~a~~~adr  203 (362)
T 2it1_A          185 ITTVYV----THDQAEALAMADR  203 (362)
T ss_dssp             CEEEEE----ESCHHHHHHHCSE
T ss_pred             CEEEEE----CCCHHHHHHhCCE
Confidence            888766    4666555555553

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.94  E-value=2.6e-26  Score=199.81  Aligned_cols=143  Identities=20%  Similarity=0.293  Sum_probs=111.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...              +...+.+.+++++++.          
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  117 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ  117 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence            4789999999999999999999999999999999987632              1122234568888763          


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcC----CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                          ++++++.+++........  ..+++|+  +++||++++..    .+|++||+||||+ ||+.++..++ +++++++
T Consensus       118 ~~~~~~~~l~~~~l~~~~~~~~--~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~  194 (266)
T 4g1u_C          118 DRQALQQVMAQTDCLALAQRDY--RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLT  194 (266)
T ss_dssp             HHHHHHHHHHHTTCSTTTTSBG--GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHcCChhHhcCCc--ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHHHHHH
Confidence                678899999987654443  4577765  48999999851    1799999999999 9999999999 9999987


Q ss_pred             hC-CCeEEEEEecccccccchhHHhh
Q 025844          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++ +.+++++    +|.+.....+++
T Consensus       195 ~~~~~tvi~v----tHdl~~~~~~~d  216 (266)
T 4g1u_C          195 RQEPLAVCCV----LHDLNLAALYAD  216 (266)
T ss_dssp             HHSSEEEEEE----CSCHHHHHHHCS
T ss_pred             HcCCCEEEEE----EcCHHHHHHhCC
Confidence            54 5677655    577776666666

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.94  E-value=2.2e-26  Score=207.31  Aligned_cols=141  Identities=15%  Similarity=0.169  Sum_probs=113.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            |+...++.+|++|++.            
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  106 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            3689999999999999999999999999999999976531            2233355678998874            


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (247)
                       ++++++.++|.+...+..  ..+++|+  +++||++++.  +|++||||||++ ||+..+..+. ++++++.+ .|.++
T Consensus       107 ~v~~~l~~~~L~~~~~~~~--~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~ti  181 (348)
T 3d31_A          107 RVLDTARDLKIEHLLDRNP--LTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV  181 (348)
T ss_dssp             HHHHHHHHTTCTTTTTSCG--GGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence             457889999987655543  4577765  4999999999  999999999999 9999999988 88888864 58888


Q ss_pred             EEEEecccccccchhHHhh
Q 025844          134 CAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (247)
                      ++|    +|...+...+++
T Consensus       182 i~v----THd~~~~~~~ad  196 (348)
T 3d31_A          182 LHI----THDQTEARIMAD  196 (348)
T ss_dssp             EEE----ESCHHHHHHHCS
T ss_pred             EEE----eCCHHHHHHhCC
Confidence            766    466655555555

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.94  E-value=1.3e-26  Score=195.65  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--C-------CCCCCCcccChhhhHh--------------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS--------------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~-------~~~~y~~~~~v~e~i~--------------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.  .       ++..+.+.++++|++.              +
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  115 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI  115 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence            368999999999999999999999999999999997641  1       2222234567777763              3


Q ss_pred             HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        60 ~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +++++.+++... ...  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++++++|.+++++
T Consensus       116 ~~~l~~~gl~~~-~~~--~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiiv  189 (214)
T 1sgw_A          116 MDALESVEVLDL-KKK--LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS  189 (214)
T ss_dssp             HHHHHHTTCCCT-TSB--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE
T ss_pred             HHHHHHcCCCcC-CCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            567888999765 333  345676654  899999999  999999999999 9999999998 8888886557787666


Q ss_pred             EecccccccchhHHhh
Q 025844          137 YLLDSQFITDVTKFIS  152 (247)
Q Consensus       137 ~l~d~~~~~d~~~~~s  152 (247)
                          +|.......+++
T Consensus       190 ----tHd~~~~~~~~d  201 (214)
T 1sgw_A          190 ----SREELSYCDVNE  201 (214)
T ss_dssp             ----ESSCCTTSSEEE
T ss_pred             ----eCCHHHHHHhCC
Confidence                344444444433

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.93  E-value=2.4e-26  Score=208.59  Aligned_cols=142  Identities=16%  Similarity=0.122  Sum_probs=110.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCC-------CCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~-------y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...     ..++       .++.+|+++++.            
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  117 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE  117 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            3689999999999999999999999999999999976521     2232       245678888874            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (247)
                          ++++++.++|.+...+..  ..+++|  ++++||++|+.  +|++||||||++ ||+..+..+. +.++++.++ |
T Consensus       118 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  192 (372)
T 1v43_A          118 IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK  192 (372)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCC
Confidence                567899999976554443  356665  45999999999  999999999999 9999999988 888888654 8


Q ss_pred             CeEEEEEecccccccchhHHhhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      .++++|    +|...+...+++.
T Consensus       193 ~tvi~v----THd~~~a~~~adr  211 (372)
T 1v43_A          193 VTTIYV----THDQVEAMTMGDR  211 (372)
T ss_dssp             CEEEEE----ESCHHHHHHHCSE
T ss_pred             CEEEEE----eCCHHHHHHhCCE
Confidence            888766    4666655555553

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.93  E-value=3.3e-26  Score=207.87  Aligned_cols=143  Identities=17%  Similarity=0.135  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCC-------CCcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFD-------YPVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~-------y~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+..           ...++       .++.+|+++++.      
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  109 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR  109 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence            368999999999999999999999999999999986531           12232       345678888874      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++++++.++|.+...+..  ..+++|+  +++||++|+.  +|++||||||++ ||+..+..+. +++++
T Consensus       110 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~  184 (372)
T 1g29_1          110 KVPRQEIDQRVREVAELLGLTELLNRKP--RELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKK  184 (372)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCGGGTTCCG--GGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCchHhcCCc--ccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHH
Confidence                      467888999977654443  4577765  4999999999  999999999999 9999999988 88888


Q ss_pred             HHh-CCCeEEEEEecccccccchhHHhhhh
Q 025844          126 LKS-RNFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      +.+ .|.++++|    +|...+...+++.+
T Consensus       185 l~~~~g~tvi~v----THd~~~a~~~adri  210 (372)
T 1g29_1          185 LQRQLGVTTIYV----THDQVEAMTMGDRI  210 (372)
T ss_dssp             HHHHHTCEEEEE----ESCHHHHHHHCSEE
T ss_pred             HHHhcCCEEEEE----CCCHHHHHHhCCEE
Confidence            865 48888766    46666555665533

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.93  E-value=2.2e-26  Score=207.71  Aligned_cols=141  Identities=18%  Similarity=0.144  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----------CCCCC-------CCcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFD-------YPVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----------~~~~~-------y~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+..          ...++       .++.+|+++++.       
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~  111 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence            368999999999999999999999999999999986531          12222       345678888874       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++.++|.+...+..  ..+++|+  +++||++|+.  +|++||||||++ ||+..+..+. +.++++
T Consensus       112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~--~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l  186 (353)
T 1oxx_K          112 MSKEEIRKRVEEVAKILDIHHVLNHFP--RELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV  186 (353)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence                     567899999987654443  4577765  4999999999  999999999999 9999999998 888888


Q ss_pred             Hh-CCCeEEEEEecccccccchhHHhh
Q 025844          127 KS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+ .|.++++|    +|...+...+++
T Consensus       187 ~~~~g~tvi~v----THd~~~~~~~ad  209 (353)
T 1oxx_K          187 QSRLGVTLLVV----SHDPADIFAIAD  209 (353)
T ss_dssp             HHHHCCEEEEE----ESCHHHHHHHCS
T ss_pred             HHhcCCEEEEE----eCCHHHHHHhCC
Confidence            65 48888766    466665555555

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.93  E-value=2.7e-26  Score=201.03  Aligned_cols=141  Identities=16%  Similarity=0.293  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--C-------CCCCC-C--------cccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-P--------VAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~-------~~~~y-~--------~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++.  .       +.++| +        +.+|++|++.      
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~  127 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS  127 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence            368999999999999999999999999999999997764  1       23333 1        1237777652      


Q ss_pred             --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                    ++++++.+++.......  ...+++|++  ++||++++.  +|++|||||||+ ||+.++..++ +
T Consensus       128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~-~  202 (279)
T 2ihy_A          128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY--IGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLL-S  202 (279)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHH-H
T ss_pred             cccccCCcHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-H
Confidence                          45678888987654433  245776654  899999999  999999999999 9999999998 8


Q ss_pred             HHHHHHhCCCeE--EEEEecccccccchhHHhh
Q 025844          122 FVDHLKSRNFNV--CAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       122 ll~~l~~~~~~i--i~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++++++|.++  +++    +|.+.+...+++
T Consensus       203 ~l~~l~~~g~tv~~iiv----tHd~~~~~~~~d  231 (279)
T 2ihy_A          203 ILDSLSDSYPTLAMIYV----THFIEEITANFS  231 (279)
T ss_dssp             HHHHHHHHCTTCEEEEE----ESCGGGCCTTCC
T ss_pred             HHHHHHHCCCEEEEEEE----ecCHHHHHHhCC
Confidence            888886557777  666    344444444444

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.93  E-value=6.6e-26  Score=195.50  Aligned_cols=140  Identities=17%  Similarity=0.210  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+|+|+|+++|+ |+|.++|.+...              ++..+++.++++|++.          
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  105 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE  105 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHH
Confidence            368999999999999999999999999 999999976421              2222234567888764          


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCC-------EEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~-------~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                       ++++++.+++.+.....  ...+++|++  ++||++++.  +|+       ++||||||+ ||+.++..+. +++++++
T Consensus       106 ~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l~~l~  180 (249)
T 2qi9_C          106 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALS  180 (249)
T ss_dssp             HHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHHHHHH
Confidence             56788999997654433  345777654  899999999  999       999999999 9999999998 8899987


Q ss_pred             hCCCeEEEEEecccccccchhHHhh
Q 025844          128 SRNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++|.+++++    +|.......+++
T Consensus       181 ~~g~tviiv----tHd~~~~~~~~d  201 (249)
T 2qi9_C          181 QQGLAIVMS----SHDLNHTLRHAH  201 (249)
T ss_dssp             HTTCEEEEE----CSCHHHHHHHCS
T ss_pred             hCCCEEEEE----eCCHHHHHHhCC
Confidence            668888666    466555555544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.93  E-value=7.4e-26  Score=196.88  Aligned_cols=141  Identities=21%  Similarity=0.190  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----CCCCCC--------CcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY--------PVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----~~~~~y--------~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++.    .+.++|        .+..++++++.            
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~  113 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP  113 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHH
Confidence            378999999999999999999999999999999997652    112222        22357777653            


Q ss_pred             ---HHHHHHHcCCC--CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 ---LEDVMEELGLG--PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 ---~~~~l~~~~L~--~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                         ++++++.+|+.  +.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++++++|
T Consensus       114 ~~~~~~~l~~~gl~~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g  188 (266)
T 2yz2_A          114 VPLVKKAMEFVGLDFDSFKDRV--PFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKWKTLG  188 (266)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcCCcccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHcC
Confidence               45788899997  543333  245676654  899999999  999999999999 9999999999 8899987668


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+++++    +|.+.....+++
T Consensus       189 ~tii~v----tHd~~~~~~~~d  206 (266)
T 2yz2_A          189 KTVILI----SHDIETVINHVD  206 (266)
T ss_dssp             CEEEEE----CSCCTTTGGGCS
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            888766    465555555554

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.92  E-value=1.4e-25  Score=193.40  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+|+|+|+  ++|++|+|.++|.++..        ..+.|       ++.+++++++.       
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  109 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL  109 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence            37899999999999999999998  88999999999976531        12333       23456666552       


Q ss_pred             ------------HHHHHHHcCCC-CCCchhhhHHh-hhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844           59 ------------LEDVMEELGLG-PNGGLIYCMEH-LEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (247)
Q Consensus        59 ------------~~~~l~~~~L~-~~~~~~~~~~~-l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (247)
                                  +.++++.+++. ......  ... +++|+  +++||++++.  +|+++||||||+ ||+.++..++ +
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~-~  184 (250)
T 2d2e_A          110 GREVGVAEFWTKVKKALELLDWDESYLSRY--LNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVA-R  184 (250)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHTCCGGGGGSB--TTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHH-H
T ss_pred             cccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-H
Confidence                        34577778884 333222  133 66654  4899999999  999999999999 9999999998 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025844          122 FVDHLKSRNFNVCAV  136 (247)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (247)
                      ++++++++|.+++++
T Consensus       185 ~l~~l~~~g~tvi~v  199 (250)
T 2d2e_A          185 GVNAMRGPNFGALVI  199 (250)
T ss_dssp             HHHHHCSTTCEEEEE
T ss_pred             HHHHHHhcCCEEEEE
Confidence            899986667888666

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.92  E-value=5.9e-25  Score=189.28  Aligned_cols=130  Identities=18%  Similarity=0.110  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       +.++| ++     ..|+++++.          +
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  115 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV  115 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Confidence            3689999999999999999999999999999999976532       11222 11     247888774          3


Q ss_pred             HHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++.+++.......         .....+++|+  +++||++++.  +|+++||||||+ ||+.++..++ +++++++
T Consensus       116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~  192 (247)
T 2ff7_A          116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC  192 (247)
T ss_dssp             HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence            4566666664211100         0013466654  4999999999  999999999999 9999999998 8888885


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       +|.+++++
T Consensus       193 -~g~tviiv  200 (247)
T 2ff7_A          193 -KGRTVIII  200 (247)
T ss_dssp             -TTSEEEEE
T ss_pred             -CCCEEEEE
Confidence             58888766

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.92  E-value=5.6e-25  Score=190.09  Aligned_cols=141  Identities=17%  Similarity=0.235  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CCCCCCCCCCcccChhhhH--------------------hHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELI--------------------SLED   61 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~~~~~~~y~~~~~v~e~i--------------------~~~~   61 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+... ....+...+.+..+++|++                    .+++
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~  111 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ  111 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence            368999999999999999999999999999974210 0001222222334554443                    2567


Q ss_pred             HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEE
Q 025844           62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY  137 (247)
Q Consensus        62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~  137 (247)
                      +++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. +++++++++ |.+++++ 
T Consensus       112 ~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tvi~v-  185 (253)
T 2nq2_C          112 ALDYLNLTHLAKRE--FTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTVVFT-  185 (253)
T ss_dssp             HHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEEEEE-
T ss_pred             HHHHcCChHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE-
Confidence            88889987654433  345776654  999999999  999999999999 9999999999 888888765 8888666 


Q ss_pred             ecccccccchhHHhh
Q 025844          138 LLDSQFITDVTKFIS  152 (247)
Q Consensus       138 l~d~~~~~d~~~~~s  152 (247)
                         +|.+.....+++
T Consensus       186 ---tHd~~~~~~~~d  197 (253)
T 2nq2_C          186 ---THQPNQVVAIAN  197 (253)
T ss_dssp             ---ESCHHHHHHHCS
T ss_pred             ---ecCHHHHHHhCC
Confidence               466555555555

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.92  E-value=1.1e-24  Score=189.70  Aligned_cols=130  Identities=16%  Similarity=0.132  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhH--------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELI--------   57 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i--------   57 (247)
                      -+++|+||||||||||+|+|+|+  ++|++|+|.++|.++..        ..++|       .+.+++.+++        
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~  126 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR  126 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence            37899999999999999999999  47899999999976421        11222       2233444433        


Q ss_pred             ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844           58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (247)
Q Consensus        58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~  118 (247)
                                     .++++++.+++.. ....... ..+++|+  +++||++++.  +|++|||||||+ ||+.++..+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l  203 (267)
T 2zu0_C          127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-VGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVV  203 (267)
T ss_dssp             HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-TTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHH
T ss_pred             hhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-cCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence                           1456788889863 3332211 1366664  4999999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025844          119 LRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (247)
                      + +++++++++|.+++++
T Consensus       204 ~-~~l~~l~~~g~tviiv  220 (267)
T 2zu0_C          204 A-DGVNSLRDGKRSFIIV  220 (267)
T ss_dssp             H-HHHHTTCCSSCEEEEE
T ss_pred             H-HHHHHHHhcCCEEEEE
Confidence            8 8888886567888666

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.91  E-value=1.2e-24  Score=186.86  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       +.++| ++     ..|+++++.           
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~  108 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED  108 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHH
Confidence            4789999999999999999999999999999999976521       23444 21     237777763           


Q ss_pred             HHHHHHHcCCCCCCchhh---------hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 LEDVMEELGLGPNGGLIY---------CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~---------~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      +.++++.+++........         ....+++|++  ++||++++.  +|+++||||||+ ||+.++..++ ++++++
T Consensus       109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~  185 (243)
T 1mv5_A          109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL  185 (243)
T ss_dssp             HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred             HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence            456777888765432210         1124666643  999999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEE
Q 025844          127 KSRNFNVCAV  136 (247)
Q Consensus       127 ~~~~~~ii~v  136 (247)
                      + +|.+++++
T Consensus       186 ~-~~~tvi~v  194 (243)
T 1mv5_A          186 M-KGRTTLVI  194 (243)
T ss_dssp             H-TTSEEEEE
T ss_pred             c-CCCEEEEE
Confidence            6 58888666

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.91  E-value=1.3e-24  Score=189.53  Aligned_cols=129  Identities=18%  Similarity=0.186  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHhH----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL----------   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~~----------   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       +.++| ++     ..|++|++..          
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  125 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE  125 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence            3689999999999999999999999999999999976521       11222 11     2377777641          


Q ss_pred             ----------HHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           60 ----------EDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        60 ----------~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                                .++++.+  |+.......  ...+++|+  +++||++++.  +|++|||||||+ ||+.++..++ ++++
T Consensus       126 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~  200 (271)
T 2ixe_A          126 ITAVAMESGAHDFISGFPQGYDTEVGET--GNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ-RLLY  200 (271)
T ss_dssp             HHHHHHHHTCHHHHHHSTTGGGSBCCGG--GTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhHHHHHHhhhcchhhhhcCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence                      2334444  444333322  23566665  4999999999  999999999999 9999999998 8888


Q ss_pred             HHHh-CCCeEEEE
Q 025844          125 HLKS-RNFNVCAV  136 (247)
Q Consensus       125 ~l~~-~~~~ii~v  136 (247)
                      ++.+ .|.+++++
T Consensus       201 ~~~~~~g~tviiv  213 (271)
T 2ixe_A          201 ESPEWASRTVLLI  213 (271)
T ss_dssp             HCTTTTTSEEEEE
T ss_pred             HHHhhcCCEEEEE
Confidence            8754 47888766

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.91  E-value=3.7e-24  Score=185.93  Aligned_cols=136  Identities=13%  Similarity=0.220  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----CCCCC-C-Cc----ccChhhhHh------------HHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PV----AMDIRELIS------------LED   61 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----~~~~~-y-~~----~~~v~e~i~------------~~~   61 (247)
                      +++|+||||||||||+|+|+|++ |++|+|.++|.++.    .+.++ | ++    ..|++|++.            +++
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~  110 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE  110 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence            68999999999999999999999 99999999986542    23455 5 22    457888764            467


Q ss_pred             HHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844           62 VMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        62 ~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      +++.+++. ......  ...+++|++  ++||++++.  +|+++||||||+ ||+.++..+. ++++++++   +++++ 
T Consensus       111 ~l~~~gl~~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tviiv-  181 (263)
T 2pjz_A          111 MLKALKLGEEILRRK--LYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EGILV-  181 (263)
T ss_dssp             HHHHTTCCGGGGGSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EEEEE-
T ss_pred             HHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cEEEE-
Confidence            88899997 543333  345776654  899999999  999999999999 9999999888 88777643   66555 


Q ss_pred             ecccccccchhHHhh
Q 025844          138 LLDSQFITDVTKFIS  152 (247)
Q Consensus       138 l~d~~~~~d~~~~~s  152 (247)
                         +|.......+++
T Consensus       182 ---tHd~~~~~~~~d  193 (263)
T 2pjz_A          182 ---THELDMLNLYKE  193 (263)
T ss_dssp             ---ESCGGGGGGCTT
T ss_pred             ---EcCHHHHHHhcC
Confidence               355444444444

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.89  E-value=2.5e-24  Score=190.75  Aligned_cols=130  Identities=16%  Similarity=0.180  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       +.++| +     ...||++++.          +
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~  160 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV  160 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence            3689999999999999999999999999999999987643       12333 1     1348888875          4


Q ss_pred             HHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++.......         .....+++|+  +++||||++.  +|++|||||||+ ||+.+...+. +.++++.
T Consensus       161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~  237 (306)
T 3nh6_A          161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVC  237 (306)
T ss_dssp             HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence            4555555543210000         0002355554  4999999999  999999999999 9999999998 8888885


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      + +.++++|
T Consensus       238 ~-~~Tvi~i  245 (306)
T 3nh6_A          238 A-NRTTIVV  245 (306)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCEEEEE
Confidence            4 6777665

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.89  E-value=3.9e-23  Score=179.15  Aligned_cols=129  Identities=19%  Similarity=0.137  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++| +|+|.++|.++..       +.++| +|     ..|+++++.          +
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  125 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV  125 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHH
Confidence            37899999999999999999999987 8999999976521       22333 11     247888774          3


Q ss_pred             HHHHHHcCCCCC------Cch---hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGPN------GGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~~------~~~---~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++.+++...      +..   ......+++|+  +++||++++.  +|+++||||||+ ||+.++..++ +++++++
T Consensus       126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~  202 (260)
T 2ghi_A          126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLR  202 (260)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc
Confidence            445555565321      000   00012466654  4999999999  999999999999 9999999988 8888885


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      + +.+++++
T Consensus       203 ~-~~tviiv  210 (260)
T 2ghi_A          203 K-NRTLIII  210 (260)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCEEEEE
Confidence            4 7777666

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.89  E-value=2.4e-23  Score=177.27  Aligned_cols=129  Identities=19%  Similarity=0.123  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--   70 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~--   70 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++. |++|++.         ..++++.+++..  
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~  113 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI  113 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHH
Confidence            3689999999999999999999999999999998721 11122222333 8888875         234455554421  


Q ss_pred             ----CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025844           71 ----NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV  136 (247)
Q Consensus        71 ----~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v  136 (247)
                          .+...   .....+++|+  +++||++++.  +|+++||||||+ ||+.++..++ +. ++.+. .+.+++++
T Consensus       114 ~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~v  186 (229)
T 2pze_A          114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV  186 (229)
T ss_dssp             TTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred             HhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence                11000   0013466654  4899999999  999999999999 9999998887 54 44443 36777655

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.88  E-value=3.2e-23  Score=196.46  Aligned_cols=145  Identities=14%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCCCcccChhhhHh-------------HHHHHHHcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS-------------LEDVMEELG   67 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y~~~~~v~e~i~-------------~~~~l~~~~   67 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+...+  .+........++++++.             ++++++.++
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~  374 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN  374 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence            378999999999999999999999999999998765432  12222223456666653             466777788


Q ss_pred             CCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccc
Q 025844           68 LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQF  143 (247)
Q Consensus        68 L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~  143 (247)
                      +.+.....  ...+++|+  +++||++|+.  +|++|||||||+ ||+.++..++ ++++++++ .|.++++|    +|.
T Consensus       375 l~~~~~~~--~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd  445 (538)
T 3ozx_A          375 LHRLLESN--VNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFII----DHD  445 (538)
T ss_dssp             GGGCTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSC
T ss_pred             CHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCC
Confidence            87654443  34577664  4999999999  999999999999 9999999999 89999864 57888766    466


Q ss_pred             ccchhHHhhhhHH
Q 025844          144 ITDVTKFISGCMA  156 (247)
Q Consensus       144 ~~d~~~~~s~~l~  156 (247)
                      +.....+++.++.
T Consensus       446 l~~~~~~aDri~v  458 (538)
T 3ozx_A          446 LSIHDYIADRIIV  458 (538)
T ss_dssp             HHHHHHHCSEEEE
T ss_pred             HHHHHHhCCEEEE
Confidence            6666666664433

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.88  E-value=2.1e-23  Score=178.55  Aligned_cols=129  Identities=21%  Similarity=0.193  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCC----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL----   68 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L----   68 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.- ...+.. +.+..|+++++.         .+++++.+++    
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~  110 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL  110 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHH
Confidence            3789999999999999999999999999999998721 011222 223567888774         2334443332    


Q ss_pred             --CCCCch---hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH---HHHhCCCeEEEE
Q 025844           69 --GPNGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAV  136 (247)
Q Consensus        69 --~~~~~~---~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~---~l~~~~~~ii~v  136 (247)
                        .+.+..   ......+++|+  +++||++++.  +|+++||||||+ ||+.++..++ +++.   .++ +|.+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviiv  185 (237)
T 2cbz_A          111 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILV  185 (237)
T ss_dssp             TTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEE
T ss_pred             HhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEE
Confidence              222100   01123466654  4999999999  999999999999 9999998888 6663   332 47777666

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.87  E-value=8.3e-23  Score=186.45  Aligned_cols=130  Identities=19%  Similarity=0.176  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~   60 (247)
                      -+++|+||||||||||+|+|+|+++ ++|+|.++|.+...       ..++| +|     ..|+++++.         +.
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~  126 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW  126 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence            3689999999999999999999998 89999999987632       12222 11     248888874         67


Q ss_pred             HHHHHcCCCCCCchhhhH---------HhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           61 DVMEELGLGPNGGLIYCM---------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        61 ~~l~~~~L~~~~~~~~~~---------~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      ++++.+++..........         ..+++|+  +++|||||+.  +|++|||||||+ ||+..+..+. +.++++. 
T Consensus       127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~-  202 (390)
T 3gd7_A          127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RTLKQAF-  202 (390)
T ss_dssp             HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HHHHTTT-
T ss_pred             HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh-
Confidence            788888886533222110         0166664  4999999999  999999999999 9999998887 7777653 


Q ss_pred             CCCeEEEEE
Q 025844          129 RNFNVCAVY  137 (247)
Q Consensus       129 ~~~~ii~v~  137 (247)
                      .+.++++++
T Consensus       203 ~~~tvi~vt  211 (390)
T 3gd7_A          203 ADCTVILCE  211 (390)
T ss_dssp             TTSCEEEEC
T ss_pred             CCCEEEEEE
Confidence            467777663

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.87  E-value=4.1e-22  Score=190.49  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++| +|     +.|++|++.           
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~  449 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ  449 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH
Confidence            3689999999999999999999999999999999977532       23333 22     237888774           


Q ss_pred             HHHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 LEDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      ++++++..++.+.....         .....+++|+  +++|||+++.  +|+++||||||+ ||+.+...+. +.++++
T Consensus       450 ~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~  526 (582)
T 3b5x_A          450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDEL  526 (582)
T ss_pred             HHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence            34566666654211000         0012456654  4899999999  999999999999 9999999988 888887


Q ss_pred             HhCCCeEEEE
Q 025844          127 KSRNFNVCAV  136 (247)
Q Consensus       127 ~~~~~~ii~v  136 (247)
                      .+ |.+++++
T Consensus       527 ~~-~~tvi~i  535 (582)
T 3b5x_A          527 QK-NKTVLVI  535 (582)
T ss_pred             cC-CCEEEEE
Confidence            54 7787666

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.87  E-value=2.8e-22  Score=190.05  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeccCCC---------CCCCCC-------Ccc---cChh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-------PVA---MDIR   54 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v---------~i~g~d~~---------~~~~~y-------~~~---~~v~   54 (247)
                      -+++|+||||||||||+|+|+|+++|++|++         .+.|.+..         ...+.+       .+.   .++.
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~  127 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI  127 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence            3689999999999999999999999999985         23443221         011111       111   1566


Q ss_pred             hhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        55 e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                      +++.       ++++++.+|+.......  ...+++|++  ++||++++.  +|++|||||||+ ||+.++..++ ++++
T Consensus       128 e~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~  202 (538)
T 1yqt_A          128 ELLKKADETGKLEEVVKALELENVLERE--IQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA-RAIR  202 (538)
T ss_dssp             HHHHHHCSSSCHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred             HHHhhhhHHHHHHHHHHHcCCChhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence            6552       78899999997654443  345776654  999999999  999999999999 9999999998 9999


Q ss_pred             HHHhCCCeEEEE
Q 025844          125 HLKSRNFNVCAV  136 (247)
Q Consensus       125 ~l~~~~~~ii~v  136 (247)
                      ++++.|.++++|
T Consensus       203 ~l~~~g~tvi~v  214 (538)
T 1yqt_A          203 RLSEEGKSVLVV  214 (538)
T ss_dssp             HHHHTTCEEEEE
T ss_pred             HHHhcCCEEEEE
Confidence            987778888776

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.86  E-value=5.9e-22  Score=190.15  Aligned_cols=144  Identities=18%  Similarity=0.195  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL   68 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L   68 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.+. ...  ..|+....+..++.+++.            ++++++.+++
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l  461 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI  461 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            3789999999999999999999999999998752 111  012222223456666542            4568889999


Q ss_pred             CCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025844           69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI  144 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~  144 (247)
                      .+.....  ...+++|+  +++||++|+.  +|++|||||||+ ||+.++..+. ++++++. +.|.++++|    +|.+
T Consensus       462 ~~~~~~~--~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v----sHd~  532 (607)
T 3bk7_A          462 IDLYDRN--VEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV  532 (607)
T ss_dssp             TTTTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCH
T ss_pred             chHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence            7655444  34577665  4999999999  999999999999 9999999999 8899886 468888766    4666


Q ss_pred             cchhHHhhhhHH
Q 025844          145 TDVTKFISGCMA  156 (247)
Q Consensus       145 ~d~~~~~s~~l~  156 (247)
                      .....+++.++.
T Consensus       533 ~~~~~~adrv~v  544 (607)
T 3bk7_A          533 LMIDYVSDRLIV  544 (607)
T ss_dssp             HHHHHHCSEEEE
T ss_pred             HHHHHhCCEEEE
Confidence            655666654433

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.86  E-value=2.5e-22  Score=192.69  Aligned_cols=129  Identities=20%  Similarity=0.239  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeccCCC---------C-------CCCCCCc---ccChh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------A-------ENFDYPV---AMDIR   54 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v---------~i~g~d~~---------~-------~~~~y~~---~~~v~   54 (247)
                      -+++|+||||||||||+|+|+|+++|++|++         .+.|.+..         .       +.+...+   ..++.
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~  197 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR  197 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence            3689999999999999999999999999995         33443321         0       1111111   12666


Q ss_pred             hhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        55 e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                      +++.       ++++++.+|+.......  ...+++|+  +++||++|+.  +|++|||||||+ ||+.++..++ ++++
T Consensus       198 e~l~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~  272 (607)
T 3bk7_A          198 ELLKKVDEVGKFEEVVKELELENVLDRE--LHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA-RVIR  272 (607)
T ss_dssp             HHHHHTCCSSCHHHHHHHTTCTTGGGSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-HHHH
T ss_pred             HHhhhhHHHHHHHHHHHHcCCCchhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence            6653       78899999997654433  34577765  4999999999  999999999999 9999999998 9999


Q ss_pred             HHHhCCCeEEEE
Q 025844          125 HLKSRNFNVCAV  136 (247)
Q Consensus       125 ~l~~~~~~ii~v  136 (247)
                      ++++.|.++++|
T Consensus       273 ~l~~~g~tvIiv  284 (607)
T 3bk7_A          273 RLANEGKAVLVV  284 (607)
T ss_dssp             HHHHTTCEEEEE
T ss_pred             HHHhcCCEEEEE
Confidence            987778888776

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.86  E-value=4.9e-22  Score=189.98  Aligned_cols=130  Identities=16%  Similarity=0.114  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++| +|     +.|++|++.           
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~  449 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ  449 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH
Confidence            3689999999999999999999999999999999987632       12333 11     237888774           


Q ss_pred             HHHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 LEDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      ++++++..++.+.....         .....+++|+  +++|||+++.  +|+++||||||+ ||+.+...+. +.++++
T Consensus       450 ~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~  526 (582)
T 3b60_A          450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL  526 (582)
T ss_dssp             HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence            34556656553210000         0012355554  4899999999  999999999999 9999999988 888888


Q ss_pred             HhCCCeEEEE
Q 025844          127 KSRNFNVCAV  136 (247)
Q Consensus       127 ~~~~~~ii~v  136 (247)
                      .+ |.+++++
T Consensus       527 ~~-~~tvi~i  535 (582)
T 3b60_A          527 QK-NRTSLVI  535 (582)
T ss_dssp             HT-TSEEEEE
T ss_pred             hC-CCEEEEE
Confidence            54 7888766

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.86  E-value=3.2e-22  Score=189.57  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE-----------EEeccCCCC----------------CCCCCCc---ccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA----------------ENFDYPV---AMD   52 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v-----------~i~g~d~~~----------------~~~~y~~---~~~   52 (247)
                      -+++|+||||||||||+|+|+|+++|++|++           .+.|.+...                +.+.+.+   ..+
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT  105 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence            4789999999999999999999999999998           444443210                1111111   124


Q ss_pred             hhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        53 v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                      +++.+.       ++++++.+++.......  ...+++|+  +++||++++.  +|++|||||||+ ||+.++..+. ++
T Consensus       106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~-~~  180 (538)
T 3ozx_A          106 VNEILTKIDERGKKDEVKELLNMTNLWNKD--ANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMA-KA  180 (538)
T ss_dssp             HHHHHHHHCCSSCHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HH
T ss_pred             HHHHhhcchhHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HH
Confidence            555442       78899999997654444  34566664  4999999999  999999999999 9999999998 99


Q ss_pred             HHHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      ++++++ |.++++|    +|.+.....+++.
T Consensus       181 l~~l~~-g~tii~v----sHdl~~~~~~~d~  206 (538)
T 3ozx_A          181 IRELLK-NKYVIVV----DHDLIVLDYLTDL  206 (538)
T ss_dssp             HHHHCT-TSEEEEE----CSCHHHHHHHCSE
T ss_pred             HHHHhC-CCEEEEE----EeChHHHHhhCCE
Confidence            999965 8888766    3554444444443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.86  E-value=2.7e-22  Score=191.61  Aligned_cols=128  Identities=16%  Similarity=0.168  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++| +     .+.|++|++.          +
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~  447 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV  447 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999987632       12333 1     1338899885          3


Q ss_pred             HHHHHHcCCCC------CC-----chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NG-----GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        60 ~~~l~~~~L~~------~~-----~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                      .+.++..++.+      .+     +..  -..+++|+  +++||||++.  +|+++||||||+ ||+.+...+. +.+++
T Consensus       448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~--g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~  522 (578)
T 4a82_A          448 VEAAKMANAHDFIMNLPQGYDTEVGER--GVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDV  522 (578)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCBCCGG--GTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred             HHHHHHhCcHHHHHhCcchhhhhhccC--CCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHH
Confidence            44555554421      11     111  12456654  4899999999  999999999999 9999988887 88888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      +. ++.+++++
T Consensus       523 ~~-~~~t~i~i  532 (578)
T 4a82_A          523 LS-KDRTTLIV  532 (578)
T ss_dssp             HT-TTSEEEEE
T ss_pred             Hc-CCCEEEEE
Confidence            74 46777665

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.85  E-value=5.9e-22  Score=187.86  Aligned_cols=144  Identities=18%  Similarity=0.194  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL   68 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L   68 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.+. ...  -.++....+..++.+++.            ++++++.+++
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l  391 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI  391 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            3789999999999999999999999999998752 111  012221223456665542            3456667777


Q ss_pred             CCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025844           69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI  144 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~  144 (247)
                      .+.....  ...+++|.  +++||++++.  +|++|||||||+ ||+.++..+. ++++++. +.|.++++|    +|.+
T Consensus       392 ~~~~~~~--~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd~  462 (538)
T 1yqt_A          392 IDLYDRE--VNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV  462 (538)
T ss_dssp             GGGTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCH
T ss_pred             hhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence            6543333  34577664  4999999999  999999999999 9999999999 8899886 358888766    4666


Q ss_pred             cchhHHhhhhHH
Q 025844          145 TDVTKFISGCMA  156 (247)
Q Consensus       145 ~d~~~~~s~~l~  156 (247)
                      .....+++.++.
T Consensus       463 ~~~~~~~drv~v  474 (538)
T 1yqt_A          463 LMIDYVSDRLMV  474 (538)
T ss_dssp             HHHHHHCSEEEE
T ss_pred             HHHHHhCCEEEE
Confidence            666666664433

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=4.1e-22  Score=191.13  Aligned_cols=135  Identities=14%  Similarity=0.158  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++|      ..+.|++|++.          +
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~  461 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI  461 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHH
Confidence            4689999999999999999999999999999999987642       11222      12348888885          3


Q ss_pred             HHHHHHcCCCC------CCch---hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~---~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++..      .+-.   -..-..+++|+  +++||||++.  +|+++||||||+ ||+.+...+. +.++++.
T Consensus       462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~  538 (598)
T 3qf4_B          462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKLM  538 (598)
T ss_dssp             HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHc
Confidence            34444333321      1100   00012356654  4899999999  999999999999 9999999988 8888875


Q ss_pred             hCCCeEEEEEeccccccc
Q 025844          128 SRNFNVCAVYLLDSQFIT  145 (247)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~  145 (247)
                       +|.++++|    +|.+.
T Consensus       539 -~~~t~i~i----tH~l~  551 (598)
T 3qf4_B          539 -EGKTSIII----AHRLN  551 (598)
T ss_dssp             -TTSEEEEE----SCCTT
T ss_pred             -CCCEEEEE----ecCHH
Confidence             57888766    45544

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=2.5e-21  Score=185.34  Aligned_cols=128  Identities=17%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~   59 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++| +     .+.|++|++.          +
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~  449 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI  449 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHH
Confidence            3689999999999999999999999999999999987642       12222 1     1337888875          3


Q ss_pred             HHHHHHcCCCC------CC-----chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NG-----GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        60 ~~~l~~~~L~~------~~-----~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                      .+.++..++.+      .+     +..  ...+++|+  +++||||++.  +|+++||||||+ ||+.+.+.+. +.+++
T Consensus       450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~--~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~  524 (587)
T 3qf4_A          450 VEAAKIAQIHDFIISLPEGYDSRVERG--GRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKR  524 (587)
T ss_dssp             HHHHHHTTCHHHHHTSSSGGGCEECSS--SCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHH
T ss_pred             HHHHHHhCcHHHHHhcccchhhHhcCC--CCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence            34444443311      10     000  12355554  4999999999  999999999999 9999999998 77888


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      +. +|+|+++|
T Consensus       525 ~~-~~~tvi~i  534 (587)
T 3qf4_A          525 YT-KGCTTFII  534 (587)
T ss_dssp             HS-TTCEEEEE
T ss_pred             hC-CCCEEEEE
Confidence            74 47888766

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.85  E-value=4e-22  Score=175.40  Aligned_cols=129  Identities=19%  Similarity=0.111  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh--------HHHHHHHcCCCCC--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGPN--   71 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~--------~~~~l~~~~L~~~--   71 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.- ...+...+++ .++++++.        +.+.++.+++...  
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~  143 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDIS  143 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence            3689999999999999999999999999999998721 0112222233 37888763        2334444544211  


Q ss_pred             ----Cch---hhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025844           72 ----GGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV  136 (247)
Q Consensus        72 ----~~~---~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v  136 (247)
                          +..   ......+++|++  ++||++++.  +|+++||||||+ ||+.++..++ ++ ++++. .|.+++++
T Consensus       144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviiv  215 (290)
T 2bbs_A          144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV  215 (290)
T ss_dssp             TSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred             hccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence                000   000124666543  899999999  999999999999 9999998887 54 44443 47777666

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.6e-21  Score=187.06  Aligned_cols=144  Identities=14%  Similarity=0.116  Sum_probs=104.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh------------HHHHHHHcCCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGLG   69 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L~   69 (247)
                      +++|+||||||||||+++|+|+++|++|+.. .+...  ..+........++++++.            ++++++.+++.
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            6899999999999999999999999999631 11100  011111112235555432            56788999998


Q ss_pred             CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccc
Q 025844           70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT  145 (247)
Q Consensus        70 ~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~~  145 (247)
                      +......  ..+++|+  +++||++|+.  +|++|||||||+ ||+.++..++ ++++++. +.|.++++|    +|.+.
T Consensus       459 ~~~~~~~--~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviiv----tHdl~  529 (608)
T 3j16_B          459 DIIDQEV--QHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIV----EHDFI  529 (608)
T ss_dssp             TTSSSBS--SSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCHH
T ss_pred             hhhcCCh--hhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence            7655443  3566664  4999999999  999999999999 9999999998 8898885 458888766    46666


Q ss_pred             chhHHhhhhHHH
Q 025844          146 DVTKFISGCMAS  157 (247)
Q Consensus       146 d~~~~~s~~l~~  157 (247)
                      ....+++.++..
T Consensus       530 ~~~~~aDrvivl  541 (608)
T 3j16_B          530 MATYLADKVIVF  541 (608)
T ss_dssp             HHHHHCSEEEEC
T ss_pred             HHHHhCCEEEEE
Confidence            666666655443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.8e-21  Score=186.72  Aligned_cols=142  Identities=15%  Similarity=0.136  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeccCCCC-------CCC------CCCc---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPV---------   49 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~g~d~~~-------~~~------~y~~---------   49 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.           +.|.+...       +.+      .|..         
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP  183 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence            37899999999999999999999999999982           22221100       000      0100         


Q ss_pred             ccChhhhH---------hHHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844           50 AMDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (247)
Q Consensus        50 ~~~v~e~i---------~~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~  117 (247)
                      ..++.+.+         .++++++.+++.......  ...+++|+  +++||++++.  +|++|||||||+ ||+.++..
T Consensus       184 ~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~  259 (608)
T 3j16_B          184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD--IEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLN  259 (608)
T ss_dssp             SSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC--TTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC--hHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHH
Confidence            01222222         377899999997654443  24566664  4999999999  999999999999 99999999


Q ss_pred             HHHHHHHHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844          118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus       118 ~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~  153 (247)
                      +. +++++++++|.++++|    +|.+.....+++.
T Consensus       260 l~-~~l~~l~~~g~tvi~v----tHdl~~~~~~~dr  290 (608)
T 3j16_B          260 AA-QIIRSLLAPTKYVICV----EHDLSVLDYLSDF  290 (608)
T ss_dssp             HH-HHHHGGGTTTCEEEEE----CSCHHHHHHHCSE
T ss_pred             HH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCCE
Confidence            88 9999998778888766    3544444444443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.79  E-value=2.4e-19  Score=184.62  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|.|+++|++|+|.++|.|...       +.++|      ..+-|++|++.          +
T Consensus       417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~  496 (1284)
T 3g5u_A          417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI  496 (1284)
T ss_dssp             CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999987532       11222      11348898885          2


Q ss_pred             HHHHHHcCCC------CCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~------~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .+.++..++.      |.+-..   ..-..+++|+  +++||||+..  +|++|||||||+ ||+.+.+.+. +.++.+.
T Consensus       497 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~~~~  573 (1284)
T 3g5u_A          497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AALDKAR  573 (1284)
T ss_dssp             HHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHc
Confidence            3333333321      110000   0002355554  4999999999  999999999999 9999887776 7777764


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                       +|.|+++|
T Consensus       574 -~~~t~i~i  581 (1284)
T 3g5u_A          574 -EGRTTIVI  581 (1284)
T ss_dssp             -TTSEEEEE
T ss_pred             -CCCEEEEE
Confidence             47888766

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.78  E-value=5.2e-19  Score=182.58  Aligned_cols=155  Identities=17%  Similarity=0.207  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -.++|+||+|||||||+++|.|+++|++|+|.++|.|...       +.++| +|     +-|+++|+.           
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence            3589999999999999999999999999999999998753       33333 22     337888863           


Q ss_pred             -HHHHHHHcCCC------CCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 -LEDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 -~~~~l~~~~L~------~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                       +.++++..++.      |.|-...   .-..+++|+  +++||||+.+  +|++|||||||+ ||+.+.+.+. +.+++
T Consensus      1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~ 1262 (1321)
T 4f4c_A         1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALDR 1262 (1321)
T ss_dssp             HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHTT
T ss_pred             HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence             45566665542      1110000   001355554  4899999999  999999999999 9999987766 66666


Q ss_pred             HHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      +. .++|+++|    +|.+..... +               -.|-|+.++-+++..
T Consensus      1263 ~~-~~~TvI~I----AHRLsTi~~-a---------------D~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A         1263 AR-EGRTCIVI----AHRLNTVMN-A---------------DCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp             TS-SSSEEEEE----CSSSSTTTT-C---------------SEEEEESSSSEEEEE
T ss_pred             Hc-CCCEEEEe----ccCHHHHHh-C---------------CEEEEEECCEEEEEC
Confidence            53 47888776    455442222 1               256677777666554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.78  E-value=5.6e-19  Score=181.91  Aligned_cols=130  Identities=15%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|.|+++|++|+|.++|.|...       ..++| +|     +.|++|++.           
T Consensus      1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A         1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp             SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence            3689999999999999999999999999999999988642       23444 22     347888873           


Q ss_pred             -HHHHHHHcCCC------CCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 -LEDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 -~~~~l~~~~L~------~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                       +.+.++..++.      |.+-...   .-..+++|+  +++|||+++.  +|++|||||||+ ||+.+...+. +.+++
T Consensus      1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A         1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp             HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence             33444444432      1110000   002355554  4999999999  999999999999 9999988887 77777


Q ss_pred             HHhCCCeEEEE
Q 025844          126 LKSRNFNVCAV  136 (247)
Q Consensus       126 l~~~~~~ii~v  136 (247)
                      + ..|.++++|
T Consensus      1217 ~-~~~~tvi~i 1226 (1284)
T 3g5u_A         1217 A-REGRTCIVI 1226 (1284)
T ss_dssp             H-SSSSCEEEE
T ss_pred             h-CCCCEEEEE
Confidence            6 457888766

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.77  E-value=1.2e-18  Score=169.12  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCcHHHHH---------------------HHHHhCCcCC-------CceEEEeccCCCC---CCCC-----
Q 025844            3 YAQLVIGPAGSGKSTYC---------------------SSLYRHCETV-------RRTMHIVNLDPAA---ENFD-----   46 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl---------------------~~l~g~l~~~-------~G~v~i~g~d~~~---~~~~-----   46 (247)
                      -+++|+||||||||||+                     +++.|+.+|+       .|.+.+.+.+...   ..++     
T Consensus        45 e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~  124 (670)
T 3ux8_A           45 KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEI  124 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeech
Confidence            36899999999999998                     8889998888       4555555543211   0000     


Q ss_pred             ---------------------CCcccChhhhHhH------------------------HHHHHHcCCCCCC-chhhhHHh
Q 025844           47 ---------------------YPVAMDIRELISL------------------------EDVMEELGLGPNG-GLIYCMEH   80 (247)
Q Consensus        47 ---------------------y~~~~~v~e~i~~------------------------~~~l~~~~L~~~~-~~~~~~~~   80 (247)
                                           ..+.+++.+++..                        .++++.+||+... ...  ...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~  202 (670)
T 3ux8_A          125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRS--AGT  202 (670)
T ss_dssp             C-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCB--GGG
T ss_pred             hhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCC--ccc
Confidence                                 0122345554421                        1237778887542 222  245


Q ss_pred             hhhhH--HHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           81 LEDNL--DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        81 l~~~~--~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +++|+  +++||++|+.  +|+  +|||||||+ ||+..+..++ +++++++++|.++++|
T Consensus       203 LSGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~v  260 (670)
T 3ux8_A          203 LSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV  260 (670)
T ss_dssp             SCHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence            77665  4999999999  888  999999999 9999999999 9999998778888777

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.75  E-value=3.7e-19  Score=177.44  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=56.5

Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      ++++++.+|+.+..........+++|++  +.||++++.  +|++|||||||+ ||+.+...+. +.++   +.+.++++
T Consensus       880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~L~-~~L~---~~g~tVIi  953 (986)
T 2iw3_A          880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGALS-KALK---EFEGGVII  953 (986)
T ss_dssp             HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHHHH-HHHH---SCSSEEEE
T ss_pred             HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHH---HhCCEEEE
Confidence            5678888888642101111345777654  899999999  999999999999 9999877666 5443   33567766


Q ss_pred             EEecccccccchhHHhh
Q 025844          136 VYLLDSQFITDVTKFIS  152 (247)
Q Consensus       136 v~l~d~~~~~d~~~~~s  152 (247)
                      +    +|.......+++
T Consensus       954 I----SHD~e~v~~l~D  966 (986)
T 2iw3_A          954 I----THSAEFTKNLTE  966 (986)
T ss_dssp             E----CSCHHHHTTTCC
T ss_pred             E----ECCHHHHHHhCC
Confidence            5    455444444443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.75  E-value=2.4e-18  Score=177.63  Aligned_cols=130  Identities=20%  Similarity=0.196  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~   59 (247)
                      -.++|+||+|||||||+++|.|+++|++|+|.++|.|...       +.++|      -.+-||+||+.          +
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v  524 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEM  524 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred             cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHH
Confidence            3689999999999999999999999999999999987653       12333      23558999885          3


Q ss_pred             HHHHHHcCCC------CCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~------~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++.      |+|....   .-..+++|+  |++||||+..  +|+++||||||+ ||..+.+.+. +.++.+.
T Consensus       525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~~l~~~~  601 (1321)
T 4f4c_A          525 VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-QALDKAA  601 (1321)
T ss_dssp             HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHH
T ss_pred             HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHh
Confidence            4444444331      1110000   001355554  4999999999  999999999999 9999977766 7777775


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      + |+|+++|
T Consensus       602 ~-~~T~iii  609 (1321)
T 4f4c_A          602 K-GRTTIII  609 (1321)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCEEEEE
Confidence            4 6777666

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.74  E-value=3.7e-19  Score=149.33  Aligned_cols=122  Identities=17%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc--CC--CCCCCCC-CcccChhhhH-hH-HHHHHHc-CCCCCCch
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDY-PVAMDIRELI-SL-EDVMEEL-GLGPNGGL   74 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~--d~--~~~~~~y-~~~~~v~e~i-~~-~~~l~~~-~L~~~~~~   74 (247)
                      -+++|+||||||||||+++|+|+ +|++|+|.....  +.  ....++| +++.  ++++ .. ......+ +.......
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~~~~~~~~~~~~~~~   99 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRPLHDALRDMVEPEVI   99 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHHHHTTTSCTTHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHHHHHHHHHhccHHHH
Confidence            36899999999999999999999 999999854211  11  1234566 3321  3333 11 0011111 10010000


Q ss_pred             hhhHHh-hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           75 IYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        75 ~~~~~~-l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                      ...++. +.+.++++||++++.  +|++|||||||+-   ++..+. ++++++ +.|.+++
T Consensus       100 ~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tii  153 (208)
T 3b85_A          100 PKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMV  153 (208)
T ss_dssp             HHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEE
T ss_pred             HHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEE
Confidence            000111 122234899999999  9999999999987   666666 777777 5677777

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.72  E-value=1e-17  Score=167.12  Aligned_cols=121  Identities=16%  Similarity=0.252  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh-CCc--C--CCceEEEeccCCCCCCC-CCCcccChhhhHh---------HHHHHHHcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENF-DYPVAMDIRELIS---------LEDVMEELG   67 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g-~l~--~--~~G~v~i~g~d~~~~~~-~y~~~~~v~e~i~---------~~~~l~~~~   67 (247)
                      -+++|+||||||||||+|+|+| .+.  +  ....+.+..     +.. ...+.+++.+++.         ++++++.+|
T Consensus       462 e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~-----q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg  536 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVE-----HDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG  536 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETT-----CCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEc-----ccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence            3689999999999999999995 221  0  001111111     111 1234556777653         677899999


Q ss_pred             CCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           68 LGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        68 L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.. ...+.  ...+++|++  ++||++++.  +|++|||||||+ ||+.++..+. +++++   .|.+++++
T Consensus       537 L~~~~~~~~--~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv  601 (986)
T 2iw3_A          537 FTDEMIAMP--ISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI  601 (986)
T ss_dssp             CCHHHHHSB--GGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE
T ss_pred             CChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE
Confidence            852 21111  345777654  899999999  999999999999 9999998888 77766   47787766

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.72  E-value=1.2e-16  Score=136.59  Aligned_cols=229  Identities=23%  Similarity=0.435  Sum_probs=151.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      ..++++.|+.|+||||++..++..+. .+.++.+.+.|++....++.+..++++.++.++++.. ++++++....+.+..
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL   91 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence            46889999999999999999998887 6678999999998777777666677777777777766 666665544443222


Q ss_pred             hhhHHHHHHHHh---hcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHh
Q 025844           82 EDNLDDWLAEEL---DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL  158 (247)
Q Consensus        82 ~~~~~~~la~al---~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~  158 (247)
                      .... .++.+.+   ..  +.+++|+|.|++.+......+...+.+.+   .. .++++++|+....++..+........
T Consensus        92 ~~~~-~~l~~~l~~~~~--~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~  164 (262)
T 1yrb_A           92 MEKF-NEYLNKILRLEK--ENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFAL  164 (262)
T ss_dssp             HTTH-HHHHHHHHHHHH--HCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred             hhhH-HHHHHHHHHHhh--cCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence            2222 3333333   23  46999999999987766544432333333   22 55667788877777777665443333


Q ss_pred             HHHhhccCCeeeeecccccccchhhh---hhhcccCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCC-eeeEEeeccC
Q 025844          159 SAMVQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRK  233 (247)
Q Consensus       159 ~~~~~~~~p~i~vlsk~dll~~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~  233 (247)
                      ......+.|.+.|+||+|+.... ..   ..++. +.+.+.+.+.. .....|.++  ++++++++++. ..+.|+|+.+
T Consensus       165 ~~~~~~~~p~~iv~NK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~  240 (262)
T 1yrb_A          165 LIDLRLGATTIPALNKVDLLSEE-EKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKT  240 (262)
T ss_dssp             HHHHHHTSCEEEEECCGGGCCHH-HHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTT
T ss_pred             HHhcccCCCeEEEEecccccccc-cHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecC
Confidence            34455688999999999998654 22   22222 33333333321 123456664  77888888876 4899999988


Q ss_pred             hH---HHHHHhhh
Q 025844          234 ES---RLLSQIMK  243 (247)
Q Consensus       234 ~~---~l~~~id~  243 (247)
                      ++   .|+..|.+
T Consensus       241 ~~gi~~l~~~i~~  253 (262)
T 1yrb_A          241 REGFEDLETLAYE  253 (262)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             cccHHHHHHHHHH
Confidence            77   66666654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.71  E-value=1.9e-18  Score=140.14  Aligned_cols=49  Identities=12%  Similarity=0.066  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhcCCCCCEEEEeCCCc-ccHH----------------hHHHHHHHHHHHHHhCCCeEEEE
Q 025844           85 LDDWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        85 ~~~~la~al~~~~~p~~lilDEPt~-LD~~----------------~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ++++||++++.  +|++++||||++ ||+.                .+..+. ++++.++++|.+++++
T Consensus        90 qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~v  155 (171)
T 4gp7_A           90 PLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYI  155 (171)
T ss_dssp             HHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEE
T ss_pred             HHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEE
Confidence            44899999999  999999999999 9999                556666 7777777668888766

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.70  E-value=3.7e-17  Score=158.53  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (247)
                      ..+.++.+++.......+ ...+++|+  +++||++|+.  +|   ++||+||||+ ||+.+...++ ++++++++.|.+
T Consensus       523 ~~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t  598 (670)
T 3ux8_A          523 KLETLYDVGLGYMKLGQP-ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT  598 (670)
T ss_dssp             HHHHHHHTTCTTSBTTCC-GGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred             HHHHHHHcCCchhhccCC-chhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence            456777888864321111 24577665  4999999998  76   5999999999 9999999999 999999877888


Q ss_pred             EEEE
Q 025844          133 VCAV  136 (247)
Q Consensus       133 ii~v  136 (247)
                      +++|
T Consensus       599 vi~v  602 (670)
T 3ux8_A          599 VLVI  602 (670)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8777

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.68  E-value=3.4e-18  Score=156.96  Aligned_cols=145  Identities=14%  Similarity=0.104  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCC----CCCcccChhhhH-------hHHHHHHHcCCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRELI-------SLEDVMEELGLGPN   71 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~----~y~~~~~v~e~i-------~~~~~l~~~~L~~~   71 (247)
                      .+++|+||||||||||+|+|+|+.+|++|+|.+.|.+......    +..+.+++.|+.       .++++++.+++...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            4799999999999999999999999999999988865421110    112234444433       37899999998764


Q ss_pred             CchhhhHHhhhh----hHHHHHHHHhhcC--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-----hCC---
Q 025844           72 GGLIYCMEHLED----NLDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN---  130 (247)
Q Consensus        72 ~~~~~~~~~l~~----~~~~~la~al~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-----~~~---  130 (247)
                      .....    ++.    .+++.+|+++...        ++|+++++||||+ ||+..+..+. ++++++.     +.|   
T Consensus       150 ~~~~~----lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~  224 (413)
T 1tq4_A          150 DFFII----ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAE  224 (413)
T ss_dssp             SEEEE----EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSS
T ss_pred             CCeEE----eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence            32221    332    3448888888762        2688999999999 9999999988 7777763     332   


Q ss_pred             CeEEEEEecccccccc--hhHHhhhhH
Q 025844          131 FNVCAVYLLDSQFITD--VTKFISGCM  155 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d--~~~~~s~~l  155 (247)
                      .+++   ++++|...+  ...+++.+.
T Consensus       225 ~~ii---liSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          225 PPIF---LLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             CCEE---ECCTTCTTSTTHHHHHHHHH
T ss_pred             CcEE---EEecCcCCccCHHHHHHHHH
Confidence            2332   456777665  666666554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.67  E-value=6.6e-18  Score=157.20  Aligned_cols=120  Identities=15%  Similarity=0.154  Sum_probs=81.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCc-e-EEEeccCCCCCCCCC-Cc---------ccChhhhHh-------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-PV---------AMDIRELIS-------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~-v~i~g~d~~~~~~~y-~~---------~~~v~e~i~-------------   58 (247)
                      +++|+||||||||||+|+|+|+++|++| + |+++| ++. +.+.| ++         .+++++++.             
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~  217 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN  217 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence            6899999999999999999999999999 8 99987 442 22333 11         234544331             


Q ss_pred             HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHH--hhcCCCCCE----EEEeC-CCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~a--l~~~~~p~~----lilDE-Pt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      +.++++.+|+.....    ...+++++  ++++|++  ++.  +|++    +|+|| |++ ||+. ...+. +++++   
T Consensus       218 ~~~ll~~~gl~~~~~----~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~---  286 (460)
T 2npi_A          218 KQPMVKNFGLERINE----NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK---  286 (460)
T ss_dssp             BCCEECCCCSSSGGG----CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH---
T ss_pred             HHHHHHHhCCCcccc----hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHH-HHHHH---
Confidence            223444555544322    23455554  3889999  999  9999    99999 999 9998 33322 44433   


Q ss_pred             CCCeEEEE
Q 025844          129 RNFNVCAV  136 (247)
Q Consensus       129 ~~~~ii~v  136 (247)
                      .+.++++|
T Consensus       287 ~~~tviiV  294 (460)
T 2npi_A          287 LNVNIMLV  294 (460)
T ss_dssp             TTCCEEEE
T ss_pred             hCCCEEEE
Confidence            36666555

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.66  E-value=4.3e-17  Score=133.43  Aligned_cols=130  Identities=11%  Similarity=0.055  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-------CCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCchh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-------AAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI   75 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-------~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~~   75 (247)
                      .++|+||||||||||+++|+|++.     +.+.|.+.       ..+.++| +++.+..+++     +..++..+.....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~   71 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG   71 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence            578999999999999999999985     34444322       1123344 2222222222     1111221110000


Q ss_pred             hhHHhhhhhH--HHHHHHH-----hhcCCCCCEEEEeC--CCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025844           76 YCMEHLEDNL--DDWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT  145 (247)
Q Consensus        76 ~~~~~l~~~~--~~~la~a-----l~~~~~p~~lilDE--Pt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~  145 (247)
                      .....+++++  ++.+|++     ++.  +|+++|+||  |++ +|+..+..+. ++++   +.+.+++++ .|.+|...
T Consensus        72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~---~~~~~~i~~-~H~~h~~~  144 (178)
T 1ye8_A           72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMH---DPNVNVVAT-IPIRDVHP  144 (178)
T ss_dssp             TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHT---CTTSEEEEE-CCSSCCSH
T ss_pred             ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHh---cCCCeEEEE-EccCCCch
Confidence            0012345544  3888996     888  999999999  999 9998876655 4443   345545544 23455544


Q ss_pred             chhHH
Q 025844          146 DVTKF  150 (247)
Q Consensus       146 d~~~~  150 (247)
                      ....+
T Consensus       145 ~~~~i  149 (178)
T 1ye8_A          145 LVKEI  149 (178)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.63  E-value=4.3e-16  Score=137.61  Aligned_cols=126  Identities=13%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhHhHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLED   61 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y-~~-------~~~v~e~i~~~~   61 (247)
                      .+++++|||||||||+++.|+|+++|++|+|.+.|.|...             ..++| ++       ..++++++....
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~  180 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK  180 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999988632             12444 22       223455554211


Q ss_pred             -------HHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 025844           62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN  130 (247)
Q Consensus        62 -------~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~  130 (247)
                             +++.+|+.+.....  +..++ .+++.+|+++..  +|+  +|++| ||+ +|+....       +.+. +.|
T Consensus       181 ~~~~d~~lldt~gl~~~~~~~--~~eLS-kqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~~-------~~~~~~~g  247 (302)
T 3b9q_A          181 EEGYDVVLCDTSGRLHTNYSL--MEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG  247 (302)
T ss_dssp             HTTCSEEEECCCCCSSCCHHH--HHHHH-HHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred             HcCCcchHHhcCCCCcchhHH--HHHHH-HHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHHH-------HHHHHhcC
Confidence                   22233444433222  34455 455899999999  999  99999 999 9987542       3343 357


Q ss_pred             CeEEEEEeccc
Q 025844          131 FNVCAVYLLDS  141 (247)
Q Consensus       131 ~~ii~v~l~d~  141 (247)
                      .+++++..+|.
T Consensus       248 ~t~iiiThlD~  258 (302)
T 3b9q_A          248 ITGLILTKLDG  258 (302)
T ss_dssp             CCEEEEECCSS
T ss_pred             CCEEEEeCCCC
Confidence            77766643443

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.60  E-value=2.1e-15  Score=136.08  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhHhHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLED   61 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y-~~-------~~~v~e~i~~~~   61 (247)
                      .+++|+|||||||||+++.|+|+++|++|+|.+.|.|...             ..++| ++       ..++++++....
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~  237 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK  237 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence            5899999999999999999999999999999999988632             12344 22       223455543211


Q ss_pred             -------HHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 025844           62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN  130 (247)
Q Consensus        62 -------~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~  130 (247)
                             +++.+|+.+.....  +..++ .+++.+|+++..  +|+  +|++| ||+ +|+..+.       +.+. +.+
T Consensus       238 ~~~~d~~lldt~Gl~~~~~~~--~~eLS-kqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~~~~g  304 (359)
T 2og2_A          238 EEGYDVVLCDTSGRLHTNYSL--MEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG  304 (359)
T ss_dssp             HTTCSEEEEECCCCSSCCHHH--HHHHH-HHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred             hCCCHHHHHHhcCCChhhhhH--HHHHH-HHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHHHhcC
Confidence                   12234444433222  34555 455999999999  999  99999 999 9987542       2333 347


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeee
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI  171 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~v  171 (247)
                      .+++++..+|...  ...       ...+.....+.|..-+
T Consensus       305 ~t~iiiThlD~~~--~gG-------~~lsi~~~~~~pI~~i  336 (359)
T 2og2_A          305 ITGLILTKLDGSA--RGG-------CVVSVVEELGIPVKFI  336 (359)
T ss_dssp             CCEEEEESCTTCS--CTH-------HHHHHHHHHCCCEEEE
T ss_pred             CeEEEEecCcccc--ccc-------HHHHHHHHhCCCEEEE
Confidence            7776664344321  111       1234445567787543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.58  E-value=2.2e-15  Score=148.69  Aligned_cols=73  Identities=25%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             HHHHHHHcCCCCCC-chhhhHHhhhhhH--HHHHHHHhhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844           59 LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (247)
Q Consensus        59 ~~~~l~~~~L~~~~-~~~~~~~~l~~~~--~~~la~al~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (247)
                      +.++++.++|+... .+.  ...+++|.  ++.||++|+.  +   |+++||||||+ ||+.....+. ++++++.+.|.
T Consensus       710 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~  784 (842)
T 2vf7_A          710 ALDTLREVGLGYLRLGQP--ATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGN  784 (842)
T ss_dssp             HHHHHHHTTCTTSBTTCC--GGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred             HHHHHHHcCCCcccccCC--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence            46788899998732 222  24566654  4899999988  7   69999999999 9999999999 99999987888


Q ss_pred             eEEEE
Q 025844          132 NVCAV  136 (247)
Q Consensus       132 ~ii~v  136 (247)
                      +|++|
T Consensus       785 tVIvi  789 (842)
T 2vf7_A          785 TVIAV  789 (842)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88776

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.56  E-value=6.4e-16  Score=148.39  Aligned_cols=157  Identities=17%  Similarity=0.107  Sum_probs=86.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCC----------CCCCCC-C------cccChhhhHhHHHHHHHc
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA----------AENFDY-P------VAMDIRELISLEDVMEEL   66 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~----------~~~~~y-~------~~~~v~e~i~~~~~l~~~   66 (247)
                      ++|+||||||||||+++|+|+..| ++|.|.+.|.+..          ...++| +      +..++++++..  ....+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~--~~~~~  125 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK--AQNAI  125 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH--HHHHH
T ss_pred             EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH--HHHHh
Confidence            799999999999999999999988 7999999887631          112333 2      23345554432  11222


Q ss_pred             CCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCC------Cc-ccHHhHHHHHHHHHHHHHhCCCe-EEEEEe
Q 025844           67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFN-VCAVYL  138 (247)
Q Consensus        67 ~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEP------t~-LD~~~~~~~~~~ll~~l~~~~~~-ii~v~l  138 (247)
                      +....+        .+... ..++.+...  .|+++++|||      |+ +|+.....+. ++++.+.+.+.+ ++++.-
T Consensus       126 ~~~~~~--------~s~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt  193 (608)
T 3szr_A          126 AGEGMG--------ISHEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVP  193 (608)
T ss_dssp             HCSSSC--------CCSCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEE
T ss_pred             cCCccc--------cchHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEe
Confidence            211111        00000 111112234  7999999999      88 9999988888 888886443333 323322


Q ss_pred             cccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       139 ~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      ++.......      .+-.....-..+.+.+-|++|.|++.+.
T Consensus       194 ~~~d~a~~~------~l~la~~v~~~g~rtI~VlTK~Dlv~~g  230 (608)
T 3szr_A          194 SNVDIATTE------ALSMAQEVDPEGDRTIGILTKPDLVDKG  230 (608)
T ss_dssp             SSSCTTTCH------HHHHHHHHCSSCCSEEEEEECGGGSSSS
T ss_pred             ccchhccHH------HHHHHHHHhhcCCceEEEecchhhcCcc
Confidence            232211111      1111222234567899999999999653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.55  E-value=5.3e-16  Score=134.94  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=61.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-------CcccChhhhHhH-----------
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL-----------   59 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~-----------   59 (247)
                      .|.++|+||||||||||+++|+|+.+|++|+|.+.|.++..    ..++|       .+.+++.|++..           
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999999999999999999876522    11222       234455555431           


Q ss_pred             --HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844           60 --EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (247)
Q Consensus        60 --~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (247)
                        .++++    ...  ..+..+.++.|++  +.+|+++     +.++++|||+. +++...     ++++.+.+. .+++
T Consensus        82 ~i~~~~~----~~~--~~~~~~~LS~G~~qrv~iaRal-----~~lllldep~~gL~~lD~-----~~l~~L~~~-~~vI  144 (270)
T 3sop_A           82 PIEKYIN----EQY--EKFLKEEVNIARKKRIPDTRVH-----CCLYFISPTGHSLRPLDL-----EFMKHLSKV-VNII  144 (270)
T ss_dssp             HHHHHHH----HHH--HHHHHHHSCTTCCSSCCCCSCC-----EEEEEECCCSSSCCHHHH-----HHHHHHHTT-SEEE
T ss_pred             HHHHHHH----HHH--HhhhHHhcCcccchhhhhheee-----eeeEEEecCCCcCCHHHH-----HHHHHHHhc-CcEE
Confidence              11111    000  0001122333221  4445443     34999999998 998762     566777655 6665


Q ss_pred             EE
Q 025844          135 AV  136 (247)
Q Consensus       135 ~v  136 (247)
                      +|
T Consensus       145 ~V  146 (270)
T 3sop_A          145 PV  146 (270)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.55  E-value=2.5e-14  Score=142.40  Aligned_cols=73  Identities=22%  Similarity=0.276  Sum_probs=57.0

Q ss_pred             HHHHHHHcCCCCCC-chhhhHHhhhhhH--HHHHHHHhhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844           59 LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (247)
Q Consensus        59 ~~~~l~~~~L~~~~-~~~~~~~~l~~~~--~~~la~al~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (247)
                      ..++++.+||+... ++.  ...+++|.  ++.||++|+.  +|   +++||||||+ ||+.....++ ++++++.+.|.
T Consensus       785 ~~~~L~~vGL~~~~lgq~--~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~  859 (916)
T 3pih_A          785 TLQVLHDVGLGYVKLGQP--ATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGN  859 (916)
T ss_dssp             HHHHHHHTTGGGSBTTCC--STTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred             HHHHHHHcCCchhhccCC--ccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCC
Confidence            45778888886432 111  23566654  4899999987  54   7999999999 9999999999 99999987788


Q ss_pred             eEEEE
Q 025844          132 NVCAV  136 (247)
Q Consensus       132 ~ii~v  136 (247)
                      +|++|
T Consensus       860 TVIvI  864 (916)
T 3pih_A          860 TVIVI  864 (916)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88777

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.55  E-value=4.8e-15  Score=135.21  Aligned_cols=52  Identities=19%  Similarity=0.036  Sum_probs=44.6

Q ss_pred             hhhhHH--HHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           81 LEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        81 l~~~~~--~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +++|++  +.||++++.  +|  ++|||||||+ ||+.+...+. ++++++. +|.+|++|
T Consensus       296 lSgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~i  352 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVV  352 (415)
T ss_dssp             SCHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred             cCHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEE
Confidence            466543  889999999  99  9999999999 9999999998 8899986 57888766

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.55  E-value=1.8e-14  Score=143.20  Aligned_cols=73  Identities=19%  Similarity=0.229  Sum_probs=58.0

Q ss_pred             HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844           59 LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (247)
Q Consensus        59 ~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (247)
                      ..++++.+||+. ..+..  ...+++|.  ++.||++|+.  +   |+++||||||+ ||+..+..++ ++++++.+.|.
T Consensus       825 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~  899 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQP--ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGD  899 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCC--GGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred             HHHHHHHcCCCcccccCc--hhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence            357888999986 32232  24566664  4899999997  6   49999999999 9999999999 99999987888


Q ss_pred             eEEEE
Q 025844          132 NVCAV  136 (247)
Q Consensus       132 ~ii~v  136 (247)
                      +|+++
T Consensus       900 TVIvi  904 (972)
T 2r6f_A          900 TVLVI  904 (972)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88776

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.55  E-value=1.9e-14  Score=124.54  Aligned_cols=102  Identities=22%  Similarity=0.195  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcc-cChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVA-MDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~-~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      -+++|+||||||||||+++|+|+++|+ +|+|.++|.++..  +  .+. ...   +.  +  ..+++.+          
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~--~--~~~~~~~---v~--q--~~~gl~~----------   84 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--V--FKHKKSI---VN--Q--REVGEDT----------   84 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS--C--CCCSSSE---EE--E--EEBTTTB----------
T ss_pred             CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee--e--cCCccee---ee--H--HHhCCCH----------
Confidence            468999999999999999999999998 9999999876421  1  111 000   00  0  1233322          


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                        ..++.++++++..  +|+++++|||+  |+.+....    ++.. +.|.+++++
T Consensus        85 --~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~~----l~~~-~~g~~vl~t  129 (261)
T 2eyu_A           85 --KSFADALRAALRE--DPDVIFVGEMR--DLETVETA----LRAA-ETGHLVFGT  129 (261)
T ss_dssp             --SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHHH----HHHH-HTTCEEEEE
T ss_pred             --HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHHH----HHHH-ccCCEEEEE
Confidence              1245899999999  99999999999  87765433    3433 457777555

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.54  E-value=2.7e-14  Score=127.50  Aligned_cols=100  Identities=20%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -.++|+||||||||||+++|+|+++|++|.|.+.|.+.    +...+   .++.+.         +-. +        ..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~~~~~---~~~~i~---------~~~-g--------gg  226 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----IVFKH---HKNYTQ---------LFF-G--------GN  226 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----CCCSS---CSSEEE---------EEC-B--------TT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----ccccc---chhEEE---------EEe-C--------CC
Confidence            36899999999999999999999999999999998542    11110   001000         000 0        11


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..++..|++++..  +|+++++|||++-      .+. ++++.+...+.+++++
T Consensus       227 ~~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t  271 (330)
T 2pt7_A          227 ITSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTT  271 (330)
T ss_dssp             BCHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEE
T ss_pred             hhHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEE
Confidence            2355899999999  9999999999982      234 5667775434455444

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.50  E-value=1.3e-13  Score=122.37  Aligned_cols=54  Identities=9%  Similarity=0.095  Sum_probs=43.4

Q ss_pred             HhhhhhHH--HHHHHHhh----cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           79 EHLEDNLD--DWLAEELD----NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~--~~la~al~----~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..++.|++  ++||++++    .  +|+++||||||+ ||+.....+. ++++++. .+.+++++
T Consensus       218 ~~lS~Gq~q~v~ia~~l~~~~~~--~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~  278 (322)
T 1e69_A          218 SLLSGGEKALVGLALLFALMEIK--PSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVI  278 (322)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTS--CCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHHhccC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEE
Confidence            35666654  88899886    5  789999999999 9999999988 8888884 46677655

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.48  E-value=9.7e-16  Score=127.48  Aligned_cols=58  Identities=5%  Similarity=-0.050  Sum_probs=44.1

Q ss_pred             HhhcCCCCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHH
Q 025844           92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA  156 (247)
Q Consensus        92 al~~~~~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (247)
                      +++.  +|+++++|||++ +    |+..++.+. ++++++++ .|.+++++    +|.+.+...+++.++.
T Consensus       137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~v----tHdl~~~~~~~d~i~~  200 (207)
T 1znw_A          137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVV----NRRLESACAELVSLLV  200 (207)
T ss_dssp             EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEE----CSSHHHHHHHHHHHHC
T ss_pred             EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEE----CCCHHHHHHHHHHHHH
Confidence            4556  899999999987 7    777888887 88888864 47888665    5777777777776544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.44  E-value=3.6e-13  Score=112.29  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-------CCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-------~~G~v~i~g~d   39 (247)
                      -+++|+||||||||||++.++|...+       .+|.+++.+.+
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            47899999999999999999996555       44466766654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.43  E-value=2e-13  Score=120.62  Aligned_cols=128  Identities=16%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCC-Cc------ccChhhhHhHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV------AMDIRELISLEDV   62 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y-~~------~~~v~e~i~~~~~   62 (247)
                      .+++|+|||||||||+++.|+|+++|++|+|.+.|.|+..             ..++| ++      ..++.+++.....
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~  182 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA  182 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999988632             12444 22      2234455432111


Q ss_pred             -------HHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCeEE
Q 025844           63 -------MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC  134 (247)
Q Consensus        63 -------l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~-~~~~ii  134 (247)
                             ++..|..+..  ...++.++ .++..+||+++.  +|+.+++    .||+.+....+ +.++.+.+ .+.+++
T Consensus       183 ~~~d~~llDt~G~~~~~--~~~~~eLs-~~r~~iaRal~~--~P~~~lL----vLDa~t~~~~~-~~~~~~~~~~~~t~i  252 (304)
T 1rj9_A          183 RGYDLLFVDTAGRLHTK--HNLMEELK-KVKRAIAKADPE--EPKEVWL----VLDAVTGQNGL-EQAKKFHEAVGLTGV  252 (304)
T ss_dssp             HTCSEEEECCCCCCTTC--HHHHHHHH-HHHHHHHHHCTT--CCSEEEE----EEETTBCTHHH-HHHHHHHHHHCCSEE
T ss_pred             CCCCEEEecCCCCCCch--HHHHHHHH-HHHHHHHHhhcC--CCCeEEE----EEcHHHHHHHH-HHHHHHHHHcCCcEE
Confidence                   0111222221  11133343 345899999999  9994333    34444444444 44555543 377776


Q ss_pred             EEEecc
Q 025844          135 AVYLLD  140 (247)
Q Consensus       135 ~v~l~d  140 (247)
                      ++.-.|
T Consensus       253 ivTh~d  258 (304)
T 1rj9_A          253 IVTKLD  258 (304)
T ss_dssp             EEECTT
T ss_pred             EEECCc
Confidence            664334

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.41  E-value=5.7e-13  Score=120.10  Aligned_cols=103  Identities=18%  Similarity=0.183  Sum_probs=63.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      -+++|+||||||||||+++++|+++++ +|.|...+ |+....  .......   +      .+...+..          
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~--~~~~~~~---v------~q~~~~~~----------  181 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV--HESKKCL---V------NQREVHRD----------  181 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC--CCCSSSE---E------EEEEBTTT----------
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh--hhccccc---e------eeeeeccc----------
Confidence            368999999999999999999999987 56665544 432111  1000000   0      00001110          


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ...+..+|+++|..  +|+++++|||+  |..+.     +.+.++...|.+++++
T Consensus       182 ~~~~~~~La~aL~~--~PdvillDEp~--d~e~~-----~~~~~~~~~G~~vl~t  227 (356)
T 3jvv_A          182 TLGFSEALRSALRE--DPDIILVGEMR--DLETI-----RLALTAAETGHLVFGT  227 (356)
T ss_dssp             BSCHHHHHHHHTTS--CCSEEEESCCC--SHHHH-----HHHHHHHHTTCEEEEE
T ss_pred             cCCHHHHHHHHhhh--CcCEEecCCCC--CHHHH-----HHHHHHHhcCCEEEEE
Confidence            01133588999999  99999999999  54443     3333445668887655

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.39  E-value=8.2e-13  Score=104.77  Aligned_cols=98  Identities=11%  Similarity=0.080  Sum_probs=65.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      .++|+||||||||||++++++.+.+ .|  .+++.+.+....                                      
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~--------------------------------------   78 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT--------------------------------------   78 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC--------------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH--------------------------------------
Confidence            5789999999999999999999887 46  555554332111                                      


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCe-EEEEEecccccccchhHHhhh
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQFITDVTKFISG  153 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~-ii~v~l~d~~~~~d~~~~~s~  153 (247)
                                ++..  +|++|++|||+.++......++ ++++.+.+.|.+ ++++.-.....+.....+.|+
T Consensus        79 ----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SR  138 (149)
T 2kjq_A           79 ----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTR  138 (149)
T ss_dssp             ----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHH
T ss_pred             ----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEECCCCHHHccccHHHHHH
Confidence                      1234  7999999999996666666666 888888766666 655543233323322444443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.38  E-value=3.8e-13  Score=134.32  Aligned_cols=107  Identities=13%  Similarity=0.156  Sum_probs=66.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHH--------HhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCch
Q 025844            3 YAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL   74 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l--------~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~   74 (247)
                      -+++|+||||||||||+|.+        .|..-|..+.. +          +..           ++++.++|+..+...
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~----------~~~-----------d~i~~~ig~~d~l~~  720 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V----------SIV-----------DCILARVGAGDSQLK  720 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E----------ECC-----------SEEEEECC-------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c----------hHH-----------HHHHHhcCchhhHHH
Confidence            46899999999999999999        56544433211 0          000           011112222221111


Q ss_pred             hhhHHhhhhhHHHHHHHHh--hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           75 IYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        75 ~~~~~~l~~~~~~~la~al--~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                      .  ...++.++ ..+++++  +.  +|+++||||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus       721 ~--lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a  781 (934)
T 3thx_A          721 G--VSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA  781 (934)
T ss_dssp             ----CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             h--HhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            1  22344444 5666666  56  999999999999 9999988886588888876 47777665

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.37  E-value=1.9e-12  Score=117.01  Aligned_cols=55  Identities=9%  Similarity=0.028  Sum_probs=46.4

Q ss_pred             HhhhhhHH--HHHHHHhh------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           79 EHLEDNLD--DWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~--~~la~al~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..+++|++  ++||++++      .  +|+++||||||+ ||+.+...++ ++++++++.|.++++|
T Consensus       278 ~~LSgGe~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~i  341 (365)
T 3qf7_A          278 RGLSGGERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFI  341 (365)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            34666654  78888888      7  999999999999 9999999998 8899987778888766

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.37  E-value=3.2e-14  Score=126.17  Aligned_cols=105  Identities=13%  Similarity=0.003  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCC------CCCCCCc--cc-ChhhhHhHHHHHHHcCCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPV--AM-DIRELISLEDVMEELGLGPN   71 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~------~~~~y~~--~~-~v~e~i~~~~~l~~~~L~~~   71 (247)
                      .+++|+||||||||||+++|+|+++|..|  .+.+..+|..-      +++.+..  .. .-.+.-.+.+.++.++ ...
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~  169 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGS  169 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTC
T ss_pred             EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCc
Confidence            68999999999999999999999999876  46555544311      1111100  00 0001112566777776 322


Q ss_pred             CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccH
Q 025844           72 GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IEL  112 (247)
Q Consensus        72 ~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~  112 (247)
                      .....  ..++.+++  +.+|++++.  +|+++|+|||+. +|+
T Consensus       170 ~~~~~--~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          170 DYACA--PVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG  209 (312)
T ss_dssp             SCEEE--EEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred             ccCCc--ccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence            21221  24555543  667788888  999999999998 764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.37  E-value=1e-12  Score=109.35  Aligned_cols=126  Identities=13%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC-------CCCCCc-ccChhhhHh-HHHHHHHcCCCCCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV-AMDIRELIS-LEDVMEELGLGPNGG   73 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~-------~~~y~~-~~~v~e~i~-~~~~l~~~~L~~~~~   73 (247)
                      -+++|+||||||||||++.+++...+.+|.+.+.+.+...+       .+++.. ...- +.+. ++......+ .....
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~  101 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE-KKLIIIDALMKEKE-DQWSL  101 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-TTEEEEECCC-----CTTBC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-CCEEEEeccccccC-ceeee
Confidence            46899999999999999999998888889998887654211       011100 0000 0000 000000000 00000


Q ss_pred             hhhhHHhhhhhHHHHHHHHhhcCCCCC--EEEEeCCCc-c--cHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025844           74 LIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLK-SRNFNVCAV  136 (247)
Q Consensus        74 ~~~~~~~l~~~~~~~la~al~~~~~p~--~lilDEPt~-L--D~~~~~~~~~~ll~~l~-~~~~~ii~v  136 (247)
                      .......+   .+...+.....  +|+  ++++|||++ +  |+...+.++ +.++.+. +.|.+++++
T Consensus       102 ~~~~~~~~---~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~  164 (235)
T 2w0m_A          102 VNLTPEEL---VNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYAT  164 (235)
T ss_dssp             SSCCHHHH---HHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEE
T ss_pred             cCCCHHHH---HHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEE
Confidence            00001111   11222222234  899  999999998 7  998888888 6677764 457777766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.36  E-value=3.4e-13  Score=127.26  Aligned_cols=121  Identities=15%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeccCCCCCCCCC--CcccChhhhHhHHHHHHHcCCCCCCchhhhHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDY--PVAMDIRELISLEDVMEELGLGPNGGLIYCME   79 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~-v~i~g~d~~~~~~~y--~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~   79 (247)
                      -+++|+||||||||||++.++|...+.++. +++.+.++..+-...  ...++      ++++. ..|+.......  ..
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~------~~~~~-~~g~~~~~~~~--p~  352 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD------FEEME-RQNLLKIVCAY--PE  352 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC------HHHHH-HTTSEEECCCC--GG
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC------HHHHH-hCCCEEEEEec--cc
Confidence            468999999999999999999999886443 455554431100000  00011      22222 22221111111  11


Q ss_pred             hhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHH-----hHHHHHHHHHHHHHhCCCeEEEE
Q 025844           80 HLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        80 ~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~-----~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .++.+  +++.+|+++..  +|+++|+| |++ ||..     .+..+. ++++.+++.|.+++++
T Consensus       353 ~LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilv  413 (525)
T 1tf7_A          353 SAGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFT  413 (525)
T ss_dssp             GSCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            23333  44788888888  99999999 999 9998     887777 8999998888888776

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.34  E-value=5.1e-13  Score=134.67  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      -+++|+||||||||||+|.+ |++.+.  -|..     -|+.     ...+++.+.+     +.++|+..+...  ....
T Consensus       790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~-----Vpq~-----~~~l~v~d~I-----~~rig~~d~~~~--~~st  851 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCY-----VPAE-----VCRLTPIDRV-----FTRLGASDRIMS--GEST  851 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCC-----EESS-----EEEECCCSBE-----EEECC-----------CH
T ss_pred             cEEEEECCCCCChHHHHHHH-HHHHHHhheeEE-----eccC-----cCCCCHHHHH-----HHHcCCHHHHhh--chhh
Confidence            47899999999999999999 987642  1210     0110     0123333332     112333322111  1123


Q ss_pred             hhhhHH-HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        81 l~~~~~-~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      ++.+++ ++++++++.  +|+++|+||||+ +|+.....+...+++.+.+. |.+++++
T Consensus       852 f~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~  908 (1022)
T 2o8b_B          852 FFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS  908 (1022)
T ss_dssp             HHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             hHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            444443 677888888  999999999999 99988655444899999765 7777655

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.33  E-value=1.2e-12  Score=114.17  Aligned_cols=127  Identities=10%  Similarity=0.094  Sum_probs=69.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCCC-----CCCc--ccChhhhHh------------HHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENF-----DYPV--AMDIRELIS------------LEDV   62 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~~-----~y~~--~~~v~e~i~------------~~~~   62 (247)
                      -+++|+||||||||||++.++|.+.+.+| .|.+.+.+.....+     .+.+  .....+.+.            ++++
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  115 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL  115 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence            36899999999999999999999998877 78776654321100     0000  111111111            1222


Q ss_pred             HHHcCC--CCC-CchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-cc------H-HhHHHHHHHHHHHHHh-CC
Q 025844           63 MEELGL--GPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        63 l~~~~L--~~~-~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD------~-~~~~~~~~~ll~~l~~-~~  130 (247)
                      ++..++  ... ...  ....+   .+...++++..  +|+++|+|||+. ++      . .....++ +.++.+++ .|
T Consensus       116 l~~~~l~i~~~~~~~--~~~~l---~~~~~a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~  187 (296)
T 1cr0_A          116 FGNDTFHLYDSFAEA--ETDRL---LAKLAYMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTG  187 (296)
T ss_dssp             HSSSCEEEECCCCSC--CHHHH---HHHHHHHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHC
T ss_pred             hccCCEEEECCCCCC--CHHHH---HHHHHHHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhC
Confidence            222222  111 101  11112   11222555667  999999999998 43      3 3445556 66777754 48


Q ss_pred             CeEEEEE
Q 025844          131 FNVCAVY  137 (247)
Q Consensus       131 ~~ii~v~  137 (247)
                      .+|+++.
T Consensus       188 ~~vi~vs  194 (296)
T 1cr0_A          188 VVLVVIC  194 (296)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            8887763

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.32  E-value=3.1e-13  Score=127.50  Aligned_cols=126  Identities=13%  Similarity=0.135  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCcHHHHHHH--HHhCCcCCCceEEEeccCCCC------CCCCC-CcccChhhhHhHHHHHHHcCCCCCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGG   73 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~--l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~   73 (247)
                      -+++|+||||||||||+++  ++|+++|.+|.|++.|.+...      +.++| +++....+++      ..+...+...
T Consensus        40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l------~~~~~~~~~~  113 (525)
T 1tf7_A           40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL------FILDASPDPE  113 (525)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE------EEEECCCCSS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcE------EEEecCcccc
Confidence            3689999999999999999  789999999999999876421      22333 1111000000      0001100000


Q ss_pred             hhhhHHhh-hhhHHHHHHHHhhcCCCCCEEEEeCCCc------ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           74 LIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ------IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        74 ~~~~~~~l-~~~~~~~la~al~~~~~p~~lilDEPt~------LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ....++.+ ...+...+..++... +|+.+++|||++      +|+..++.+. ++++.+++.|.+++++
T Consensus       114 ~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~i  181 (525)
T 1tf7_A          114 GQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMT  181 (525)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEE
T ss_pred             hhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence            00000000 011224455566422 899999999986      3788888888 9999998778888776

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.30  E-value=1e-12  Score=130.90  Aligned_cols=113  Identities=12%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCC-CCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      -+++|+||||||||||+|+++++.-. ..|.     .-|+. ..++..           ++++..+|+..+....  ...
T Consensus       674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----~vpa~~~~i~~~-----------d~i~~~ig~~d~l~~~--~st  735 (918)
T 3thx_B          674 RVMIITGPNMGGKSSYIKQVALITIMAQIGS-----YVPAEEATIGIV-----------DGIFTRMGAADNIYKG--RST  735 (918)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----CBSSSEEEEECC-----------SEEEEEC------------CC
T ss_pred             eEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----cccchhhhhhHH-----------HHHHHhCChHHHHHHh--HHH
Confidence            36899999999999999999764211 1110     00110 001110           0011112222111111  122


Q ss_pred             hhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        81 l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                      ++.++.  ..++++ +.  +|+++||||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus       736 fs~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v  792 (918)
T 3thx_B          736 FMEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV  792 (918)
T ss_dssp             HHHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             hhHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            334442  344444 55  999999999999 9999998887688888865 57777666

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.28  E-value=1.1e-11  Score=112.39  Aligned_cols=116  Identities=19%  Similarity=0.167  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcccC-hhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMD-IRELISLEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~~~-v~e~i~~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      -+++|+|||||||||++++|+|+++|+ +|.|.+.+.+...   .+..... +.+        ..+|+.+.         
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q--------~~~g~~~~---------  196 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQ--------REVGEDTK---------  196 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEE--------EEBTTTBS---------
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEe--------eecCCCHH---------
Confidence            468999999999999999999999997 8999887754321   1110000 000        01233221         


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM  155 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (247)
                         .++..+++++..  +|+++++|||+  |.....    ..++.. ..|..++.+    +|. .+...+++.++
T Consensus       197 ---~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~  254 (372)
T 2ewv_A          197 ---SFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIV  254 (372)
T ss_dssp             ---CSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHH
T ss_pred             ---HHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHH
Confidence               124788889988  99999999999  554432    334443 457666433    333 33555555543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.28  E-value=2e-12  Score=126.78  Aligned_cols=104  Identities=14%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeccCCC-CCCCCC----CcccChhhhHhHHHHHHHcCCCCCCchhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPA-AENFDY----PVAMDIRELISLEDVMEELGLGPNGGLIYC   77 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~g~d~~-~~~~~y----~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~   77 (247)
                      +++|+||||||||||+|+++|+.. ++.|.+.     |+ ...+++    ...+++.|++..       ++  .      
T Consensus       578 i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~~-------g~--S------  637 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLAG-------GK--S------  637 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC-------------CC--S------
T ss_pred             EEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHHh-------cc--c------
Confidence            689999999999999999999874 6777642     21 122333    123344443311       11  0      


Q ss_pred             HHhhhhhHHHHHHHHh--hcCCCCCEEEEeCC---Cc-ccHHhHH-HHHHHHHHHHHhCCCeEEEE
Q 025844           78 MEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        78 ~~~l~~~~~~~la~al--~~~~~p~~lilDEP---t~-LD~~~~~-~~~~~ll~~l~~~~~~ii~v  136 (247)
                        .+...+ ..+++++  +.  +|+++|+|||   |+ +|..+.. .+. +.+.   +.|.+++++
T Consensus       638 --~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~---~~g~~vl~~  694 (765)
T 1ewq_A          638 --TFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALH---ERRAYTLFA  694 (765)
T ss_dssp             --HHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHH---HHTCEEEEE
T ss_pred             --HHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHH---hCCCEEEEE
Confidence              111222 5667777  66  9999999999   88 9988753 344 4333   346677655

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.28  E-value=1.1e-11  Score=110.65  Aligned_cols=145  Identities=17%  Similarity=0.165  Sum_probs=86.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCC--C-------CcccChhhhHhHHH
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD--Y-------PVAMDIRELISLED   61 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~--y-------~~~~~v~e~i~~~~   61 (247)
                      ..+++++|||||||||+++.|+|+++|++|+|.+.|.|+..           +.++  +       .+..++++++....
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~  208 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK  208 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999988632           1111  2       22334555543211


Q ss_pred             H-------HHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHH-hCCCeE
Q 025844           62 V-------MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNV  133 (247)
Q Consensus        62 ~-------l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~-~~~~~i  133 (247)
                      .       ++..|..+..      ..+...+ ..+++++..  ++.++++|.++..|      .+ +.++.+. +.+.+.
T Consensus       209 ~~~~d~vliDtaG~~~~~------~~l~~eL-~~i~ral~~--de~llvLDa~t~~~------~~-~~~~~~~~~~~it~  272 (328)
T 3e70_C          209 ARGIDVVLIDTAGRSETN------RNLMDEM-KKIARVTKP--NLVIFVGDALAGNA------IV-EQARQFNEAVKIDG  272 (328)
T ss_dssp             HHTCSEEEEEECCSCCTT------TCHHHHH-HHHHHHHCC--SEEEEEEEGGGTTH------HH-HHHHHHHHHSCCCE
T ss_pred             hccchhhHHhhccchhHH------HHHHHHH-HHHHHHhcC--CCCEEEEecHHHHH------HH-HHHHHHHHhcCCCE
Confidence            1       0011121111      1223334 457788877  77788888766543      33 4445554 357777


Q ss_pred             EEEEecccccccchhHHhhhhHHHhHHHhhccCCeeee
Q 025844          134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI  171 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~v  171 (247)
                      +++.-+|...-.  .       ...+.....+.|..-+
T Consensus       273 iilTKlD~~a~~--G-------~~l~~~~~~~~pi~~i  301 (328)
T 3e70_C          273 IILTKLDADARG--G-------AALSISYVIDAPILFV  301 (328)
T ss_dssp             EEEECGGGCSCC--H-------HHHHHHHHHTCCEEEE
T ss_pred             EEEeCcCCccch--h-------HHHHHHHHHCCCEEEE
Confidence            766545542211  1       1234555667887644

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.27  E-value=2.4e-11  Score=108.49  Aligned_cols=55  Identities=13%  Similarity=0.122  Sum_probs=44.2

Q ss_pred             HhhhhhHH--------HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           79 EHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~--------~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..+++|++        +++|++++.  +|+++||||||+ ||+..+..+. ++++.+.+.+.+++++
T Consensus       247 ~~lS~G~~~~~~la~~l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~  310 (339)
T 3qkt_A          247 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV  310 (339)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence            34666653        467778877  999999999999 9999999998 8888876667777666

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.27  E-value=1.4e-13  Score=113.52  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      +++|+||||||||||++.|+|+++ ++| |.++|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~   37 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT   37 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence            579999999999999999999999 889 98888654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.25  E-value=6.6e-12  Score=101.53  Aligned_cols=97  Identities=15%  Similarity=0.193  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeccCCCCCCCCCCcccChhhhHh-HHHHHHHcCCCCCCchhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~-v~i~g~d~~~~~~~y~~~~~v~e~i~-~~~~l~~~~L~~~~~~~~~~~~   80 (247)
                      .+++|+||||||||||++++++.+.+..|. +.+               ++..+.+. +........   .         
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~---------------~~~~~~~~~~~~~~~~~~---~---------   91 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF---------------FDTKDLIFRLKHLMDEGK---D---------   91 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE---------------EEHHHHHHHHHHHHHHTC---C---------
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE---------------EEHHHHHHHHHHHhcCch---H---------
Confidence            468999999999999999999998765552 221               12222211 111111100   0         


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                        .   ..+  ....  +|++|++|||+ . +|+..+..+. ++++...+++.+++++
T Consensus        92 --~---~~~--~~~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~t  139 (180)
T 3ec2_A           92 --T---KFL--KTVL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIIT  139 (180)
T ss_dssp             --S---HHH--HHHH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred             --H---HHH--HHhc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEE
Confidence              0   111  1223  89999999998 3 9998887777 8888876677777665

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.24  E-value=8.8e-12  Score=107.99  Aligned_cols=126  Identities=13%  Similarity=0.102  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-CCCCCC-CcccChhh-------------hHhHHHHHHHcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDY-PVAMDIRE-------------LISLEDVMEELG   67 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-~~~~~y-~~~~~v~e-------------~i~~~~~l~~~~   67 (247)
                      -+++|+||||||||||++.+++.+..  |.++ .|.++. ...+.| ....+..+             ....+++++.++
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~  107 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIAG--GPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL  107 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHT--CCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence            36899999999999999999986653  3221 122221 011111 00001100             011344567776


Q ss_pred             CCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc---ccHHhH---HHHHHHHHHHHH-hCCCeEEEEE
Q 025844           68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY  137 (247)
Q Consensus        68 L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~---LD~~~~---~~~~~~ll~~l~-~~~~~ii~v~  137 (247)
                      +.+.....  ...++.+. ...+++++.  +|+++++|||++   +|....   ..++ +.+..+. +.|.++++++
T Consensus       108 l~~~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~  178 (279)
T 1nlf_A          108 IQPLIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH  178 (279)
T ss_dssp             ECCCTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred             EeecCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence            65543222  12344454 555678888  999999999997   565433   5666 6666664 4588888774

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.24  E-value=6.4e-12  Score=112.90  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--cCCC----ce-EEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~----G~-v~i~g~d~   40 (247)
                      -+++|+||||||||||++.+++..  +|+.    |+ +++++.+.
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            478999999999999999999998  5554    67 77777543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.20  E-value=7.1e-13  Score=111.29  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------CCCCCC-CcccCh----------------hhh-
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PVAMDI----------------REL-   56 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------~~~~~y-~~~~~v----------------~e~-   56 (247)
                      -+++|+||||||||||+++|+|++ |  |++.+ |.+..        ...+.| +++...                ..+ 
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   99 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF   99 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence            468999999999999999999998 5  89988 65431        123333 111110                010 


Q ss_pred             -----HhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHH-----HHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844           57 -----ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWL-----AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (247)
Q Consensus        57 -----i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~l-----a~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (247)
                           -.++++++.....-.     . ..++++++  +++     +++++.  .|++++||||++ +|..+...+. +.+
T Consensus       100 ~g~~~~~i~~~l~~~~~~il-----~-~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~-~~l  170 (218)
T 1z6g_A          100 YGTLKSEYDKAKEQNKICLF-----E-MNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQ-KRM  170 (218)
T ss_dssp             EEEEHHHHHHHHHTTCEEEE-----E-ECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHH-HHH
T ss_pred             CCCcHHHHHHHHhCCCcEEE-----E-ecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHH-HHH
Confidence                 114445544221100     0 11233333  555     556666  899999999998 9988777766 444


Q ss_pred             HHH
Q 025844          124 DHL  126 (247)
Q Consensus       124 ~~l  126 (247)
                      ..+
T Consensus       171 ~~~  173 (218)
T 1z6g_A          171 EQL  173 (218)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.16  E-value=1.4e-11  Score=121.49  Aligned_cols=109  Identities=13%  Similarity=0.097  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeccCCCC-CCCCC----CcccChhhhHhHHHHHHHcCCCCCCchhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDY----PVAMDIRELISLEDVMEELGLGPNGGLIY   76 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~g~d~~~-~~~~y----~~~~~v~e~i~~~~~l~~~~L~~~~~~~~   76 (247)
                      -+++|+||||||||||+|+++|+.. ...|..     -|+. ..+++    ...+++.+++..       ++        
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~i~~~~~~~d~l~~-------~~--------  667 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDRIFTRVGAADDLAS-------GR--------  667 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCEEEEEEC------------------------
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHHHHhhCCHHHHHHh-------hh--------
Confidence            3689999999999999999999742 223311     0111 11222    112233332210       11        


Q ss_pred             hHHhhhhhHHHHHHHH--hhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844           77 CMEHLEDNLDDWLAEE--LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (247)
Q Consensus        77 ~~~~l~~~~~~~la~a--l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (247)
                        ..++.++ ..++.+  .+.  +|+++|+|||++ +|+.....+...+++.+.+ .|.+++++
T Consensus       668 --stf~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~  726 (800)
T 1wb9_A          668 --STFMVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA  726 (800)
T ss_dssp             ----CHHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             --hhhhHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence              1122233 222333  355  999999999988 8887766664488888876 47777655

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.14  E-value=1e-12  Score=108.79  Aligned_cols=121  Identities=11%  Similarity=0.073  Sum_probs=72.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhh-------------HhHHHHHHHcCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-------------ISLEDVMEELGL   68 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~-------------i~~~~~l~~~~L   68 (247)
                      ..+++|+||||||||||+++|+|++.|   .+.+...|+.....   ..+++.++             -.+.+.++.+++
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDL---GHLPLEERLRVNYDHPDAFDLALYLEHAQALLR   79 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCC---TTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCc---ccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence            368999999999999999999999876   46666555422111   11122211             125566777766


Q ss_pred             CCCCchhhhHHhhhhh------HHHHHHHHhhcCCCCCEEEEeCCCc--------ccHHhHHHHHHHHHHH-HHhCCCeE
Q 025844           69 GPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDH-LKSRNFNV  133 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~------~~~~la~al~~~~~p~~lilDEPt~--------LD~~~~~~~~~~ll~~-l~~~~~~i  133 (247)
                      +...... . ..++.+      +++.++++++.  +|.++++|||++        ||+.....+. +.+++ .++.|.++
T Consensus        80 ~~~~~~~-~-~~~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~  154 (211)
T 3asz_A           80 GLPVEMP-V-YDFRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSL  154 (211)
T ss_dssp             TCCEEEC-C-EETTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCH
T ss_pred             CCCcCCC-c-ccCcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCH
Confidence            5432111 0 011111      11345666777  888888899975        6888777777 55554 34457665

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.11  E-value=1.4e-11  Score=103.70  Aligned_cols=113  Identities=15%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC---CCCCC-CcccChhhhHhHH-HHHHHcCCCCCCchh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDY-PVAMDIRELISLE-DVMEELGLGPNGGLI   75 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~---~~~~y-~~~~~v~e~i~~~-~~l~~~~L~~~~~~~   75 (247)
                      -+++|+||||||||||+++|+|.++|  ..|.|.+.+.++..   ..+.| +++....+...+. ++++...+..+   .
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~---~   93 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN---Y   93 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE---E
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc---c
Confidence            47899999999999999999999986  67889888876643   23455 2222111111110 00111111100   0


Q ss_pred             hhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        76 ~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +     .... ..+ ..++.  .++++|||    +|+.+...+. +.+.    .+.+|+++
T Consensus        94 y-----g~~~-~~v-~~~l~--~G~illLD----LD~~~~~~i~-~~l~----~~~tI~i~  136 (219)
T 1s96_A           94 Y-----GTSR-EAI-EQVLA--TGVDVFLD----IDWQGAQQIR-QKMP----HARSIFIL  136 (219)
T ss_dssp             E-----EEEH-HHH-HHHHT--TTCEEEEE----CCHHHHHHHH-HHCT----TCEEEEEE
T ss_pred             C-----CCCH-HHH-HHHHh--cCCeEEEE----ECHHHHHHHH-HHcc----CCEEEEEE
Confidence            0     0011 222 33445  68999999    9999987776 4433    46666544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.10  E-value=5.8e-10  Score=92.09  Aligned_cols=116  Identities=14%  Similarity=0.069  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhh-----HhHHHHHHHcCCCCCCchhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-----ISLEDVMEELGLGPNGGLIYC   77 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~-----i~~~~~l~~~~L~~~~~~~~~   77 (247)
                      -+++|+||||||||||++.+++  + .++.+.+...+..   +.  + ..+.+.     +..+++++.+.+....     
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   86 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG---FS--P-ERLVQMAETRGLNPEEALSRFILFTPS-----   86 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC---CC--H-HHHHHHHHTTTCCHHHHHHHEEEECCT-----
T ss_pred             EEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC---CC--H-HHHHHHHHhcCCChHHHhhcEEEEecC-----
Confidence            4689999999999999999999  3 3455555443221   00  0 001110     0012233322221110     


Q ss_pred             HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH--------HHHHHHHHHHHHh-CCCeEEEEE
Q 025844           78 MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY  137 (247)
Q Consensus        78 ~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~--------~~~~~~ll~~l~~-~~~~ii~v~  137 (247)
                         -...+  ....++++... +|+++++|||++ +|+...        ..++ +.++.+.+ .+.++++++
T Consensus        87 ---~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~  153 (220)
T 2cvh_A           87 ---DFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN  153 (220)
T ss_dssp             ---TTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred             ---CHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence               00111  14456677761 399999999999 887432        2233 33555543 477877664

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.10  E-value=4.2e-11  Score=110.66  Aligned_cols=141  Identities=9%  Similarity=0.005  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC---CCC------------CCCCC-Cc-------ccChhhhHh-
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDY-PV-------AMDIRELIS-   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d---~~~------------~~~~y-~~-------~~~v~e~i~-   58 (247)
                      -+++|+||||||||||+++|+|+.+|+.|.|.++|.+   ...            ..+.| ++       .+++.+++. 
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~  237 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR  237 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999973   211            11223 22       223333332 


Q ss_pred             HHHHHHHcCCCCC-CchhhhHHhhhhhHH-HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh---C-CC
Q 025844           59 LEDVMEELGLGPN-GGLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF  131 (247)
Q Consensus        59 ~~~~l~~~~L~~~-~~~~~~~~~l~~~~~-~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~---~-~~  131 (247)
                      ..+....  -+.. .........++.+++ +++|   +.  +|++      ++ +|+..+..+. ++++++.+   . |.
T Consensus       238 ~ae~~~~--~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~Gs  303 (438)
T 2dpy_A          238 IAEDFRD--RGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGS  303 (438)
T ss_dssp             HHHHHHT--TTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCE
T ss_pred             HHHHHHh--CCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCc
Confidence            1222221  1110 001112344555552 4444   55  7877      87 9999998888 88888755   2 42


Q ss_pred             -eEEEEEecccccccchhHHhhhhHHHhH
Q 025844          132 -NVCAVYLLDSQFITDVTKFISGCMASLS  159 (247)
Q Consensus       132 -~ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (247)
                       |.+.+.++.+|.+.  ..+++..+....
T Consensus       304 iT~~~tVlv~tHdl~--~~iad~v~~l~d  330 (438)
T 2dpy_A          304 ITAFYTVLTEGDDQQ--DPIADSARAILD  330 (438)
T ss_dssp             EEEEEEEECSSSCSC--CHHHHHHHHHSS
T ss_pred             ccceeEEEEeCCCcc--chhhceEEEEeC
Confidence             22333356677776  344555544433

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.09  E-value=6.1e-10  Score=93.37  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh--CCcC-----CCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g--~l~~-----~~G~v~i~g~d   39 (247)
                      -+++|+||||||||||++.+++  ..++     ..|.+++.+.+
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            4689999999999999999999  5554     45667776654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.08  E-value=1.5e-10  Score=103.95  Aligned_cols=144  Identities=10%  Similarity=0.055  Sum_probs=84.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--C---C---------CCC-C-cccChhhhHh-------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--E---N---------FDY-P-VAMDIRELIS-------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~---~---------~~y-~-~~~~v~e~i~-------~   59 (247)
                      -+++|+||||||||||+++|+|+.+|+.|.+.+.|.+...  +   .         +.+ . .+....+.+.       +
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~  151 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTI  151 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999998865311  0   0         001 0 0111222222       1


Q ss_pred             HHHHHHcCCCCCC-chhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh--CCC-eEE
Q 025844           60 EDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RNF-NVC  134 (247)
Q Consensus        60 ~~~l~~~~L~~~~-~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~--~~~-~ii  134 (247)
                      .+.....  +.+- ........++.++ ..++.+ +.  +|++      +. +|+..+..+. ++++++.+  .|. |.+
T Consensus       152 ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~  218 (347)
T 2obl_A          152 AEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAI  218 (347)
T ss_dssp             HHHHHTT--TCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEE
T ss_pred             HHHHHhc--cccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeE
Confidence            2221111  1100 0001234556666 333333 34  6765      77 9999999988 88888864  353 333


Q ss_pred             EEEecccccccchhHHhhhhHHHhHHH
Q 025844          135 AVYLLDSQFITDVTKFISGCMASLSAM  161 (247)
Q Consensus       135 ~v~l~d~~~~~d~~~~~s~~l~~~~~~  161 (247)
                      .+-++.+|.+.  ..+++.......+.
T Consensus       219 ~tVl~~thdl~--~~i~d~v~~i~dG~  243 (347)
T 2obl_A          219 YTVLLESDNVN--DPIGDEVRSILDGH  243 (347)
T ss_dssp             EEEECCSSCCC--CHHHHHHHHHCSEE
T ss_pred             EEEEEeCCCCC--ChhhhheEEeeCcE
Confidence            34467778877  44566665554443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.07  E-value=5.3e-12  Score=107.35  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH---hCCcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~---g~l~~~~G~v~i~g~d   39 (247)
                      .+++|+|||||||||+++.|+   |+..++.|++.+.+.+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~   67 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK   67 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence            578999999999999999999   9999999998887653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.06  E-value=3.7e-10  Score=100.23  Aligned_cols=116  Identities=13%  Similarity=0.222  Sum_probs=58.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeccCCCC-----CCCCCCcc-----cC-----hhhhHhHHHHHHHcCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDYPVA-----MD-----IRELISLEDVMEELGL   68 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g-~l~~~~G~v~i~g~d~~~-----~~~~y~~~-----~~-----v~e~i~~~~~l~~~~L   68 (247)
                      +.|.||||+||||+++++++ ++.+..|.+.+.|.+...     ..+.+.+.     ++     ..+...+++.++.+.-
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  118 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ  118 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence            78999999999999999999 789999999888754321     11111000     00     0000012333332211


Q ss_pred             CCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ....      .... .+     ..+..  +|+++|+|||+++|..+...+. +.+++.. .+.++|++
T Consensus       119 ~~~~------~~~~-~l-----s~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~  170 (354)
T 1sxj_E          119 MEQV------DFQD-SK-----DGLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMV  170 (354)
T ss_dssp             TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEE
T ss_pred             hccc------cccc-cc-----cccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEE
Confidence            1000      0000 00     01345  8999999999999998887777 7766653 34455444

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.06  E-value=6e-11  Score=106.79  Aligned_cols=128  Identities=9%  Similarity=0.020  Sum_probs=67.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCC----ceEEEeccCCCCCCCCCCcccChhhhHhH--HH-H---HH---HcCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL--ED-V---ME---ELGLG   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~----G~v~i~g~d~~~~~~~y~~~~~v~e~i~~--~~-~---l~---~~~L~   69 (247)
                      -.++|+||||||||||+++|+|+++|+.    |++++.+..... ...+.+ .+. +.+..  .+ .   ..   .+-+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~-~~I~~~~q~~~~~~~t~~~nl~~~  247 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDY-PQMALGHQRYIDYAVRHSHKIAFI  247 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999999998    888764321111 111111 011 11210  00 0   01   01111


Q ss_pred             CCCc-hhhhHHhhh-hhHHHHHHHHhh-cCCCCCEEEEeC---CC------c-ccHHhHHHHHHHHHHHHH-hCCCeEEE
Q 025844           70 PNGG-LIYCMEHLE-DNLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLK-SRNFNVCA  135 (247)
Q Consensus        70 ~~~~-~~~~~~~l~-~~~~~~la~al~-~~~~p~~lilDE---Pt------~-LD~~~~~~~~~~ll~~l~-~~~~~ii~  135 (247)
                      .... ......... .+++..+++++. .  +|+++++||   |+      . +|...+..+. +.+.++. +.+.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili  324 (365)
T 1lw7_A          248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE  324 (365)
T ss_dssp             SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred             eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence            1100 000000111 112255555543 5  899999999   64      4 7888888888 6666654 34777765


Q ss_pred             E
Q 025844          136 V  136 (247)
Q Consensus       136 v  136 (247)
                      +
T Consensus       325 l  325 (365)
T 1lw7_A          325 I  325 (365)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.03  E-value=4.8e-10  Score=98.99  Aligned_cols=91  Identities=22%  Similarity=0.299  Sum_probs=63.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +.+++|+|||||||||+++.|++++.+.+|+|.+.+.|+...        ...+.  +..+.+..++......     ..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------~a~eq--L~~~~~~~gl~~~~~~-----s~  168 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------AAIEQ--LKIWGERVGATVISHS-----EG  168 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------HHHHH--HHHHHHHHTCEEECCS-----TT
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------HHHHH--HHHHHHHcCCcEEecC-----Cc
Confidence            357899999999999999999999999999999998876321        01111  3456666665421100     00


Q ss_pred             hhhHH---HHHHHHhhcCCCCCEEEEeCCCc
Q 025844           82 EDNLD---DWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        82 ~~~~~---~~la~al~~~~~p~~lilDEPt~  109 (247)
                      ....+   .++++++..  +|+++|+|||+.
T Consensus       169 ~~~~~v~~~al~~a~~~--~~dvvIiDtpg~  197 (306)
T 1vma_A          169 ADPAAVAFDAVAHALAR--NKDVVIIDTAGR  197 (306)
T ss_dssp             CCHHHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred             cCHHHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence            00011   367778888  999999999986

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.02  E-value=1.5e-09  Score=95.19  Aligned_cols=107  Identities=17%  Similarity=0.079  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCC--chhhhHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--GLIYCMEH   80 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~--~~~~~~~~   80 (247)
                      .+++++|+||+||||+++.+++++.+.+|+|.+.+.|+....       .. +  ....+.+..++....  ....+. .
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~-------~~-~--ql~~~~~~~~l~~~~~~~~~~p~-~  167 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA-------AR-E--QLRLLGEKVGVPVLEVMDGESPE-S  167 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH-------HH-H--HHHHHHHHHTCCEEECCTTCCHH-H
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh-------HH-H--HHHHhcccCCeEEEEcCCCCCHH-H
Confidence            578899999999999999999999999999999998874311       01 1  122344555553211  000001 1


Q ss_pred             hhhhHHHHHHHHhhcCCCCCEEEEeCC-Cc-ccHHhHHHHHHHHHHHH
Q 025844           81 LEDNLDDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        81 l~~~~~~~la~al~~~~~p~~lilDEP-t~-LD~~~~~~~~~~ll~~l  126 (247)
                      +   ++.+++.+...  +++++|+||| +. +|......+. .+.+.+
T Consensus       168 l---~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~  209 (295)
T 1ls1_A          168 I---RRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL  209 (295)
T ss_dssp             H---HHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred             H---HHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence            1   23567766667  8999999999 55 8877766665 665555

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.02  E-value=2.2e-10  Score=105.30  Aligned_cols=126  Identities=15%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCC-C-------CCCCCCCcccChhhhHhHHHHHHHcCCCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP-A-------AENFDYPVAMDIRELISLEDVMEELGLGPNG   72 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~-~-------~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~   72 (247)
                      +-++|+||||||||||+++|+|...+..|  .+.+.+... .       .+.....+.+++.|++........   ....
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~  108 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCW  108 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--------------C
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---hhhH
Confidence            55799999999999999999999875443  111111000 0       011111234455555543221110   0000


Q ss_pred             chhhhHHhhhhhH------HHHHHHHhhcCCCCC---EEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCeEEEE-Eecc
Q 025844           73 GLIYCMEHLEDNL------DDWLAEELDNYLDDD---YLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLD  140 (247)
Q Consensus        73 ~~~~~~~~l~~~~------~~~la~al~~~~~p~---~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~d  140 (247)
                        ....+++...+      ++.|+++++.  +|+   ++++|||| . +|+...     .+++.+.. +.+++.| +=.|
T Consensus       109 --~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L~~~d~-----~~lk~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          109 --QPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGLKPLDI-----EFMKRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             --HHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSCCHHHH-----HHHHHHTT-TSEEEEEEESTT
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCCCHHHH-----HHHHHHhc-cCcEEEEEEccc
Confidence              00001111111      1457778777  999   99999998 5 988652     44556644 5665554 4455


Q ss_pred             c
Q 025844          141 S  141 (247)
Q Consensus       141 ~  141 (247)
                      .
T Consensus       179 l  179 (418)
T 2qag_C          179 T  179 (418)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.98  E-value=1.5e-10  Score=92.66  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      -+++|+||||||||||+|+|+|++ |++|+|.+.|.++
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            478999999999999999999999 9999999988765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.96  E-value=3.1e-11  Score=106.55  Aligned_cols=98  Identities=17%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec-cCCC------C-CCCCCCcccChhhhHhHHHHHHHcCCCCCCch
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGL   74 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g-~d~~------~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~   74 (247)
                      -+++|+||||||||||+++|+|++   +|+|...+ .++.      . +++.+.++.+  +  .+.+.++.+ + +.+-.
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L-~~gld  197 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-L-RNALD  197 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-T-TGGGG
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-h-HccCC
Confidence            478999999999999999999998   79997543 2211      0 1232221111  1  245556553 2 11111


Q ss_pred             hhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844           75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (247)
Q Consensus        75 ~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (247)
                         ...+++|++.. ||+++.  +|++||    |+ ||+.+...+.
T Consensus       198 ---g~~LSgGqkQR-ARAll~--~p~iLl----Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          198 ---GYPVSIDRKHK-AAVQIK--APPLLV----TSNIDVQAEDRYL  233 (305)
T ss_dssp             ---TCCEECCCSSC-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred             ---ccCcCHHHHHH-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence               12466665444 999999  999999    88 9998876654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.93  E-value=4e-09  Score=96.34  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHH--HhCCcCCC-----ceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCC----
Q 025844            3 YAQLVIGPAGSGKSTYCSSL--YRHCETVR-----RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN----   71 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l--~g~l~~~~-----G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~----   71 (247)
                      -+++|+||||||||||++.+  .+..+++.     +.+++.+.+...             ...+.++.+.+++.+.    
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~-------------~~rl~~~a~~~gl~~~~vle  245 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR-------------PVRLVSIAQRFGLDPDDALN  245 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC-------------HHHHHHHHHHTTCCHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC-------------HHHHHHHHHHcCCChHhHhh
Confidence            36899999999999999954  56666533     356666543210             1112333444444321    


Q ss_pred             -Cch--hhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH------------HHHHHHHHHHHHh-CCCeEE
Q 025844           72 -GGL--IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVC  134 (247)
Q Consensus        72 -~~~--~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~------------~~~~~~ll~~l~~-~~~~ii  134 (247)
                       ...  ....+....-. ..+...+... +|+++++|+|+. ++....            ..++ +.++.+.+ .+.+++
T Consensus       246 ni~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVI  322 (400)
T 3lda_A          246 NVAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVV  322 (400)
T ss_dssp             TEEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEE
T ss_pred             cEEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEE
Confidence             000  00000000001 1111222222 799999999998 775322            3445 55555554 488888


Q ss_pred             EEE
Q 025844          135 AVY  137 (247)
Q Consensus       135 ~v~  137 (247)
                      ++.
T Consensus       323 lv~  325 (400)
T 3lda_A          323 VTN  325 (400)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            774

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.92  E-value=4.8e-10  Score=91.91  Aligned_cols=124  Identities=11%  Similarity=-0.022  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC-----cCCCceEEEecc----------CC-CCCC--------------CC-CCc--
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNL----------DP-AAEN--------------FD-YPV--   49 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l-----~~~~G~v~i~g~----------d~-~~~~--------------~~-y~~--   49 (247)
                      +.++|+|+||||||||++.++|..     .|+.|.+...+.          |. ....              +. |.+  
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~  106 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKR  106 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhh
Confidence            578999999999999999999988     777776654220          11 0000              00 000  


Q ss_pred             ----------ccCh--hh-hHhHHHHHHHcCCCCCCchhhhHHhhhhhHH---HHHHHHhhcCCCCCEEEEeCCCc-ccH
Q 025844           50 ----------AMDI--RE-LISLEDVMEELGLGPNGGLIYCMEHLEDNLD---DWLAEELDNYLDDDYLVFDCPGQ-IEL  112 (247)
Q Consensus        50 ----------~~~v--~e-~i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~---~~la~al~~~~~p~~lilDEPt~-LD~  112 (247)
                                +.+.  .. ...+.++++..++....- ....+.++.+.+   ...+++++.  +|..++.|||++ +|.
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal~~  183 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL-LTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSLKK  183 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEE-EECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTTTT
T ss_pred             hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEE-EecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeecCC
Confidence                      0000  00 011334555555432110 011233444322   456777777  888889999999 999


Q ss_pred             HhHHHHHHHHHHHHHhCC
Q 025844          113 FTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus       113 ~~~~~~~~~ll~~l~~~~  130 (247)
                      .+...++ +.+.++.+++
T Consensus       184 ~~~~~l~-~~l~~~~~~~  200 (210)
T 1pui_A          184 QGVDKLR-QKLDTWFSEM  200 (210)
T ss_dssp             BSHHHHH-HHHHHHHC--
T ss_pred             CCHHHHH-HHHHHHHhhc
Confidence            9999998 6666654444

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.90  E-value=9.1e-09  Score=92.63  Aligned_cols=99  Identities=16%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCC-CCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~-y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      -.++|+||||||||||+++|+|+++|++|.|.+.|....  ..+ ....+.   .+...+.    .++.         ..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~--~~~~~~~~v~---~v~~q~~----~~~~---------~~  237 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL--FLPDHPNHVH---LFYPSEA----KEEE---------NA  237 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC--CCTTCSSEEE---EECC----------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc--CccccCCEEE---EeecCcc----cccc---------cc
Confidence            368999999999999999999999999999999874210  011 000000   0000000    0000         01


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~  128 (247)
                      ....+..++.++..  .|+.+++|||..-      ... ++++.+..
T Consensus       238 ~~t~~~~i~~~l~~--~pd~~l~~e~r~~------~~~-~~l~~l~~  275 (361)
T 2gza_A          238 PVTAATLLRSCLRM--KPTRILLAELRGG------EAY-DFINVAAS  275 (361)
T ss_dssp             -CCHHHHHHHHTTS--CCSEEEESCCCST------HHH-HHHHHHHT
T ss_pred             ccCHHHHHHHHHhc--CCCEEEEcCchHH------HHH-HHHHHHhc
Confidence            11234677778877  9999999999852      223 45666643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.87  E-value=1.2e-08  Score=95.25  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+++|+||||||||||++.|+|++++++|+|.+.+.|.
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT  331 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred             eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence            58999999999999999999999999999999988765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.87  E-value=9.4e-09  Score=90.19  Aligned_cols=87  Identities=15%  Similarity=0.154  Sum_probs=56.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      .+++++|||||||||+++.|++.+.++.| +|.+.+.|+..        ....+.+  ..+.+..++......      -
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eqL--~~~~~~~gl~~~~~~------~  169 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQL--KTYAELLQAPLEVCY------T  169 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHHH--HHHHTTTTCCCCBCS------S
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHHH--HHHHHhcCCCeEecC------C
Confidence            47899999999999999999999998667 89998887631        1222322  223334454322110      1


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~  109 (247)
                      ...++.++++  +.  +++++|+|+|+-
T Consensus       170 ~~~l~~al~~--~~--~~dlvIiDT~G~  193 (296)
T 2px0_A          170 KEEFQQAKEL--FS--EYDHVFVDTAGR  193 (296)
T ss_dssp             HHHHHHHHHH--GG--GSSEEEEECCCC
T ss_pred             HHHHHHHHHH--hc--CCCEEEEeCCCC
Confidence            1223345553  36  899999997764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.86  E-value=2.2e-09  Score=98.60  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=37.3

Q ss_pred             HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH-HHhCCCeEEEE
Q 025844           87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV  136 (247)
Q Consensus        87 ~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v  136 (247)
                      +.++++|..  +++++++|+|+. +.+.....+. +.++. +...|..|+.+
T Consensus       167 ieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~i  215 (427)
T 2qag_B          167 LVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQF  215 (427)
T ss_dssp             HHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCC
T ss_pred             HHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEec
Confidence            778888886  899999999998 9888777777 55554 87778777544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.84  E-value=4.7e-09  Score=92.24  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~g~d   39 (247)
                      +-++|+||||||||||++.|+|. +.|++| +.+.|.+
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~   55 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK   55 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC----------------
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence            56799999999999999999998 888888 6665544

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.76  E-value=1.9e-09  Score=100.52  Aligned_cols=37  Identities=19%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      +++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~   67 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE   67 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred             eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence            6899999999999999999999999999999999765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.76  E-value=4.7e-08  Score=90.06  Aligned_cols=152  Identities=18%  Similarity=0.168  Sum_probs=82.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +.+++++||+||||||++..|++++.+.+++|.+.+.|+..      +.  ..+.  +..+-+..++.-...... .+ .
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r------~~--a~eq--L~~~~~~~gv~~~~~~~~-~d-p  164 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR------PA--AYDQ--LLQLGNQIGVQVYGEPNN-QN-P  164 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC------HH--HHHH--HHHHHHTTTCCEECCTTC-SC-H
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc------hh--HHHH--HHHHHHhcCCceeecccc-CC-H
Confidence            36789999999999999999999999999999999887522      11  1111  223334444422110000 00 0


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc----ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHH
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS  157 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~----LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (247)
                      ..-....++.+...  +++++|+|+|+.    .|.....++. .+.+.+ +.. .+++|  +|++.-.+....+      
T Consensus       165 ~~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~-~pd-~vlLV--lDa~~gq~a~~~a------  231 (433)
T 3kl4_A          165 IEIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVL-KPD-DVILV--IDASIGQKAYDLA------  231 (433)
T ss_dssp             HHHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHH-CCS-EEEEE--EEGGGGGGGHHHH------
T ss_pred             HHHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhh-CCc-ceEEE--EeCccchHHHHHH------
Confidence            00011344444445  899999999985    4555444443 444444 222 23333  5665433332221      


Q ss_pred             hHHHhh-ccCCeeeeecccccccc
Q 025844          158 LSAMVQ-LELPHVNILSKMDLVTN  180 (247)
Q Consensus       158 ~~~~~~-~~~p~i~vlsk~dll~~  180 (247)
                        ..+. .-.+...|+||.|.-.+
T Consensus       232 --~~f~~~~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          232 --SRFHQASPIGSVIITKMDGTAK  253 (433)
T ss_dssp             --HHHHHHCSSEEEEEECGGGCSC
T ss_pred             --HHHhcccCCcEEEEeccccccc
Confidence              1111 11234457888886443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.74  E-value=1.1e-09  Score=93.05  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..+++|+|||||||||++++|+|++
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999999976

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.74  E-value=2.1e-08  Score=84.00  Aligned_cols=40  Identities=10%  Similarity=0.037  Sum_probs=29.4

Q ss_pred             CCCEEEEeCCCc-c--cHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844           98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        98 ~p~~lilDEPt~-L--D~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      +|+++++|+|+. .  |+...+..+..+.+.+++.|.++++++
T Consensus       128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~  170 (247)
T 2dr3_A          128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVS  170 (247)
T ss_dssp             TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            799999999998 5  555556666466666666788887763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.74  E-value=4.8e-08  Score=87.13  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      .+++++|+|||||||+++.|++.+.+.+|++.+.+.|+..
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~   96 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   96 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence            5789999999999999999999999999999999988854

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.72  E-value=1.2e-08  Score=89.82  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEE---eccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i---~g~d   39 (247)
                      .+++|+||||||||||+++|+|++.  |++|+|.+   +|..
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence            6899999999999999999999988  99999999   5543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.71  E-value=1.6e-08  Score=82.15  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-----------CCceEEEecc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----------~~G~v~i~g~   38 (247)
                      +.++|+|+||||||||++.++|...+           ..|.+.++|.
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~   76 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK   76 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence            67899999999999999999998765           4577777764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.66  E-value=1.6e-08  Score=81.76  Aligned_cols=35  Identities=31%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      .+++|+|||||||||+++.|+|.  +..|.|.+++.+
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~   44 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD   44 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence            57899999999999999999998  678999998754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.64  E-value=3e-08  Score=98.85  Aligned_cols=109  Identities=15%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             HhCCcCCCceEEEeccCCCC-------CCCCCCc--ccCh----------hhhHhHHHHHHHcCCCCCC-chhhhHHhhh
Q 025844           23 YRHCETVRRTMHIVNLDPAA-------ENFDYPV--AMDI----------RELISLEDVMEELGLGPNG-GLIYCMEHLE   82 (247)
Q Consensus        23 ~g~l~~~~G~v~i~g~d~~~-------~~~~y~~--~~~v----------~e~i~~~~~l~~~~L~~~~-~~~~~~~~l~   82 (247)
                      .+.++|..+.|.++|.++..       +.+.|..  .++.          .+.-...+.+..+||+... .+.  ...++
T Consensus       389 g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~--~~~LS  466 (916)
T 3pih_A          389 GRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRS--ATTLS  466 (916)
T ss_dssp             SCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSB--GGGCC
T ss_pred             cccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCC--cccCC
Confidence            34578889999999976521       1111100  0111          1111245677788887542 222  34566


Q ss_pred             hhH--HHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           83 DNL--DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        83 ~~~--~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +|.  +++||++|+.  +|+  ++||||||+ ||+.....++ ++++++++.|.+|++|
T Consensus       467 GGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivV  522 (916)
T 3pih_A          467 GGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVV  522 (916)
T ss_dssp             HHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence            664  4999999998  776  999999999 9999999999 9999998778898877

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.62  E-value=4.5e-08  Score=77.35  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=44.1

Q ss_pred             HhhhhhHH--HHH------HHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           79 EHLEDNLD--DWL------AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~--~~l------a~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..+++|++  ++|      |++++.  +|+++|+||||+ ||+.++..+. ++++.+.+.|.+++++
T Consensus        56 ~~LSgGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiiv  119 (148)
T 1f2t_B           56 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV  119 (148)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred             hHCCHHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEE
Confidence            45666654  433      478888  999999999999 9999999888 8888886667777666

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.62  E-value=1e-07  Score=85.49  Aligned_cols=90  Identities=17%  Similarity=0.181  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -++.|.||||||||||+..++......+|.+.+...+..     +.+           ...+.+|+....-..... .-.
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-----~~~-----------~~a~~lG~~~~~l~i~~~-~~~  124 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-----LDP-----------EYAKKLGVDTDSLLVSQP-DTG  124 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----CCH-----------HHHHHTTCCGGGCEEECC-SSH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-----cCH-----------HHHHHcCCCHHHeEEecC-CCH
Confidence            368899999999999999988766666777777654321     110           023344443211000000 001


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc-c
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-I  110 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~-L  110 (247)
                      ... ..++++++...+|+++++|+|+. +
T Consensus       125 e~~-l~~~~~l~~~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          125 EQA-LEIADMLVRSGALDIIVIDSVAALV  152 (349)
T ss_dssp             HHH-HHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEcChHhhc
Confidence            122 45666666522699999999998 5

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.61  E-value=1.5e-09  Score=91.78  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      +++|+||||||||||+++|+|++.|++|.|.++|.+.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            3578999999999999999999999999999988765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.61  E-value=1.3e-08  Score=90.73  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=37.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      .+++|+||||||||||+++|+|+++|++|+|.+.+.++..
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   95 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence            5799999999999999999999999999999999998853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.61  E-value=2.4e-08  Score=80.88  Aligned_cols=37  Identities=32%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      |..+++|+|||||||||+++.|++   +.+|.+.+++.+.
T Consensus         1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~   37 (189)
T 2bdt_A            1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII   37 (189)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence            566899999999999999999997   5678899988654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.58  E-value=5.6e-09  Score=84.54  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD   39 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d   39 (247)
                      |+-+++|+|++|||||||++.|.|+++|+   .|.|.++|.+
T Consensus         1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~   42 (171)
T 2f1r_A            1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG   42 (171)
T ss_dssp             --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence            56689999999999999999999999998   7899888765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.58  E-value=3.2e-06  Score=67.51  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.57  E-value=1.1e-06  Score=73.77  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR   30 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~   30 (247)
                      +-++|+|++|+|||||++.+.|...+..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~~~~   57 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKVFHS   57 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence            5689999999999999999998655433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.55  E-value=9.8e-07  Score=77.32  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      .+++++|++|+||||++..+++.+.+.+++|.+.+.|+.
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            578899999999999999999999999999999998874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.55  E-value=1.7e-08  Score=83.42  Aligned_cols=38  Identities=21%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~   40 (247)
                      .+++|+||||||||||+++|+|+++|.   .|.|.++|...
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            579999999999999999999999864   56676666543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.54  E-value=3.6e-08  Score=90.49  Aligned_cols=38  Identities=32%  Similarity=0.300  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      -+++|+||||||||||+++++|++++.+|+|.+.+.++
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            36899999999999999999999999999999998654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.54  E-value=3.4e-08  Score=86.61  Aligned_cols=38  Identities=13%  Similarity=0.093  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i---~g~d~   40 (247)
                      .+++++||||||||||+++|+|+.+|++|+|.+   .|.+.
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~  210 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT  210 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence            468999999999999999999999999999998   66554

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.54  E-value=6.7e-06  Score=67.48  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .-++|+|+.|+|||||++.+.|-
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.52  E-value=5e-08  Score=86.55  Aligned_cols=39  Identities=21%  Similarity=0.220  Sum_probs=34.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeccCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP   40 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i~g~d~   40 (247)
                      +++++|+||||||||||+++|.+++.  +.+|.+.+.+.|.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            57999999999999999999999987  5678888877664

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.52  E-value=6e-07  Score=80.32  Aligned_cols=30  Identities=27%  Similarity=0.239  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh--CCcCCCceE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTM   33 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g--~l~~~~G~v   33 (247)
                      .++|+|++|||||||++.++|  +++...|.+
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            578999999999999999999  666666655

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.51  E-value=2.1e-08  Score=92.04  Aligned_cols=136  Identities=12%  Similarity=0.118  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-----------cCCCceEEEec-cCCC-CCCCCCCcc----cCh-hhhHh----HHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC-----------ETVRRTMHIVN-LDPA-AENFDYPVA----MDI-RELIS----LED   61 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l-----------~~~~G~v~i~g-~d~~-~~~~~y~~~----~~v-~e~i~----~~~   61 (247)
                      .++|+|+||||||||+++++|..           .|+.|.+.+.+ .... .+..++...    ... .....    ++.
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~  238 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV  238 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence            58999999999999999999983           34444444332 1000 011111000    000 01110    111


Q ss_pred             HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025844           62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL  138 (247)
Q Consensus        62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l  138 (247)
                      ++..+++.  ..   +.+.++..++  ..++++++.  .|.++++    + +|+... ..+..+.+.+++.+.+++.+  
T Consensus       239 lL~vvDls--~~---~~~~ls~g~~el~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~i--  304 (416)
T 1udx_A          239 LLYVLDAA--DE---PLKTLETLRKEVGAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPV--  304 (416)
T ss_dssp             EEEEEETT--SC---HHHHHHHHHHHHHHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEEC--
T ss_pred             hhEEeCCc--cC---CHHHHHHHHHHHHHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEE--
Confidence            22223333  11   1233443332  667888888  9999999    7 999876 44535555555557666543  


Q ss_pred             cccccccchhHHhhhh
Q 025844          139 LDSQFITDVTKFISGC  154 (247)
Q Consensus       139 ~d~~~~~d~~~~~s~~  154 (247)
                       +++.-.....++..+
T Consensus       305 -SA~~g~gi~eL~~~i  319 (416)
T 1udx_A          305 -SALTGAGLPALKEAL  319 (416)
T ss_dssp             -CTTTCTTHHHHHHHH
T ss_pred             -ECCCccCHHHHHHHH
Confidence             455445555554433

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.50  E-value=3.4e-08  Score=81.27  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -.++|+||||||||||+++|+|+++
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4689999999999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.50  E-value=4.1e-07  Score=80.97  Aligned_cols=116  Identities=12%  Similarity=0.093  Sum_probs=63.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .+.|.||+|+||||+++.+++.+.+.. ..+...+-..         ..+..+  .+..+++.++........ ......
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---------~~~~~~--~~~~l~~~l~~~~~~~~~-~~~~~~  113 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---------YRNFTA--IIGEIARSLNIPFPRRGL-SRDEFL  113 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---------CCSHHH--HHHHHHHHTTCCCCSSCC-CHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---------CCCHHH--HHHHHHHHhCccCCCCCC-CHHHHH
Confidence            688999999999999999999887652 3333322111         001111  134455555543211000 011111


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh---CCCeEEEE
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV  136 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~---~~~~ii~v  136 (247)
                          ..+...+.....|.++++||+..+|......+. ++++.+..   .+..+|++
T Consensus       114 ----~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~  165 (389)
T 1fnn_A          114 ----ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV  165 (389)
T ss_dssp             ----HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred             ----HHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence                222222222226889999999999877766665 55555443   34455444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.49  E-value=4.8e-08  Score=80.34  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      ..+++|+|+|||||||+++.|++.+++.+|.+.+.+.|.
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            368999999999999999999999998899999887764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.49  E-value=1.4e-07  Score=83.68  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      .+++++|||||||||++..|++++.+.+|+|.+.+.|+.
T Consensus       106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            578999999999999999999999999999999998863

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.46  E-value=7.8e-08  Score=78.45  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~   38 (247)
                      .+++|+|||||||||++++|+|+++    .+.+.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~   39 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALA----EIKISIS   39 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence            5789999999999999999999964    4555553

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.46  E-value=1.1e-08  Score=89.41  Aligned_cols=28  Identities=32%  Similarity=0.421  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETV   29 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~   29 (247)
                      +++++|.||+|||||||++.|.+++.+.
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            4789999999999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.44  E-value=1.2e-07  Score=89.19  Aligned_cols=37  Identities=19%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      .+++|+|||||||||++++|+|+++|+.|.|.+.|.+
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            4589999999999999999999999999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.43  E-value=7.3e-08  Score=85.14  Aligned_cols=39  Identities=18%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--------cCCCceEEEeccCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l--------~~~~G~v~i~g~d~~   41 (247)
                      -+++|+|+||||||||++.|.|..        .++.|+|.++|.++.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            478999999999999999999997        789999999997653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.42  E-value=2.8e-06  Score=75.96  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~   43 (247)
                      .+.++|+|++|+|||||+..+++.+...+.+|.+...||...
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~  120 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST  120 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            368999999999999999999988776677888888887543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.42  E-value=1.1e-06  Score=79.07  Aligned_cols=89  Identities=17%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -++.|.||||||||||+..++....+.+|.+.+........     +           ...+++++.+..-..... ...
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~-----~-----------~ra~rlgv~~~~l~i~~~-~~~  124 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD-----P-----------VYAKNLGVDLKSLLISQP-DHG  124 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----H-----------HHHHHHTCCGGGCEEECC-SSH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc-----h-----------HHHHHcCCchhhhhhhhc-cCH
Confidence            46889999999999999999998888888876654321110     0           034445554321111110 011


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~  109 (247)
                      ... .++++.+.....|+++++|+-+.
T Consensus       125 e~~-l~~~~~l~~~~~~dlvVIDSi~~  150 (356)
T 3hr8_A          125 EQA-LEIVDELVRSGVVDLIVVDSVAA  150 (356)
T ss_dssp             HHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred             HHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence            112 44455554322799999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.42  E-value=1.7e-05  Score=63.52  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.41  E-value=1.5e-07  Score=82.67  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=29.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i---~g~d~   40 (247)
                      .+++++||||||||||+++|+ ..+|.+|+|.+   .|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~  205 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT  205 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred             cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence            468999999999999999999 99999999999   77554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.38  E-value=5.7e-06  Score=75.96  Aligned_cols=39  Identities=26%  Similarity=0.274  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      .+++++|++||||||++..|++++.+.+++|.+.+.|+.
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            578899999999999999999999999999999988763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.37  E-value=1.1e-07  Score=79.63  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=16.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY-RHCET   28 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~   28 (247)
                      .+++|+|||||||||++++|+ |++++
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC----C
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            478999999999999999999 99854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.37  E-value=2e-07  Score=83.80  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEe-cc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~-g~   38 (247)
                      .+++|+||||||||||+++|+|..+ +..|+|.+. |.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~  253 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL  253 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCC
Confidence            3689999999999999999999999 999999886 54

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.36  E-value=1.8e-07  Score=76.70  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+++|+|||||||||+++.|++.+    |.+.+++.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~   63 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF   63 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence            478999999999999999999986    7888887553

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.35  E-value=5e-06  Score=76.65  Aligned_cols=102  Identities=16%  Similarity=0.120  Sum_probs=59.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +.+++++|++||||||++..|+.++...+.+|.+...|+...      .  ..+  .+..+-+..++.-......  ...
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~------a--a~e--qL~~~~~~~gvpv~~~~~~--~dp  167 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP------G--AYH--QLRQLLDRYHIEVFGNPQE--KDA  167 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST------H--HHH--HHHHHHGGGTCEEECCTTC--CCH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch------h--HHH--HHHHHHHhcCCcEEecCCC--CCH
Confidence            468999999999999999999999888777898887775321      0  111  1223333444421110000  000


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHH
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVP  117 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~  117 (247)
                      ..-.+.++..+-..  +++++|+|+|+-  .|.....+
T Consensus       168 ~~i~~~al~~a~~~--~~DvVIIDTaGrl~~d~~lm~e  203 (443)
T 3dm5_A          168 IKLAKEGVDYFKSK--GVDIIIVDTAGRHKEDKALIEE  203 (443)
T ss_dssp             HHHHHHHHHHHHHT--TCSEEEEECCCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCCEEEEECCCcccchHHHHHH
Confidence            01111334444445  699999999985  55444433

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.34  E-value=1.1e-06  Score=75.50  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++++|++|||||||++.++|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            678999999999999999999863

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.34  E-value=5.4e-08  Score=83.07  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH---hCCcCCCceEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH   34 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~---g~l~~~~G~v~   34 (247)
                      .+++|+|||||||||++++|+   |+..+++|.++
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            579999999999999999999   99999999887

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.33  E-value=1.9e-07  Score=75.32  Aligned_cols=38  Identities=13%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~   40 (247)
                      -+++|+||||||||||++.|.+.+++ ..|.|......|
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~   44 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP   44 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence            47899999999999999999998764 456665544333

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.31  E-value=1.6e-06  Score=69.53  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++|+|++|||||||++.+.+-.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            568999999999999999999753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.30  E-value=4.4e-07  Score=74.33  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      |+++++|+||+||||||+++.|+++     |...++.
T Consensus         1 m~~~i~l~G~~GsGKST~~~~La~l-----g~~~id~   32 (206)
T 1jjv_A            1 MTYIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA   32 (206)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence            6789999999999999999999983     5555543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.29  E-value=2e-07  Score=76.33  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE--EEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v--~i~g~d~   40 (247)
                      .+++|+|||||||||+.+.|++.+. ..|.+  ++++.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~   64 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV   64 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence            5799999999999999999999988 67877  7777543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.29  E-value=1.1e-07  Score=83.82  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i   35 (247)
                      -+++|+||||||||||+++|+|..++..|+|.+
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             CEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            368999999999999999999999999999987

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.29  E-value=2.8e-07  Score=73.17  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      |+.+++|+|||||||||+++.|++.+.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3468999999999999999999998653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.28  E-value=3.5e-07  Score=74.53  Aligned_cols=29  Identities=24%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G   31 (247)
                      .+++|+|||||||||+++.|++.+.|+.|
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            57899999999999999999999966544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.27  E-value=3.7e-07  Score=76.61  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+++|.|+|||||||+++.|+|+    +|+|.+.+.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            57899999999999999999998    78899887653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.27  E-value=1.1e-05  Score=62.64  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            67899999999999999999863

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.27  E-value=8.9e-06  Score=71.30  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ..++|+|++|+|||||++.+.|.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46899999999999999999974

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.26  E-value=3.5e-07  Score=81.86  Aligned_cols=41  Identities=22%  Similarity=0.436  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~   43 (247)
                      .+++|+|++|||||||++.+.|.+.+.+|+|.+.+.||...
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~  115 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC  115 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence            68999999999999999999999999999999999988653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.26  E-value=1e-06  Score=81.37  Aligned_cols=131  Identities=12%  Similarity=0.024  Sum_probs=69.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCC---------CCCCc------ccChhhhHhHHHHHHHcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN---------FDYPV------AMDIRELISLEDVMEELG   67 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~---------~~y~~------~~~v~e~i~~~~~l~~~~   67 (247)
                      .+.|.|+||+|||||+..+++...+..| .|.+.+.....+.         ..+..      .++..+.-.+.+.++.++
T Consensus       205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~  284 (454)
T 2r6a_A          205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLS  284 (454)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            6789999999999999999998766444 7888775532211         11100      112222222344444443


Q ss_pred             CCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHH----h-H---HHHHHHHHHHHHh-CCCeEEEEE
Q 025844           68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----T-H---VPVLRNFVDHLKS-RNFNVCAVY  137 (247)
Q Consensus        68 L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~----~-~---~~~~~~ll~~l~~-~~~~ii~v~  137 (247)
                      ..+..-.. ....-...+ ...++.+....+|+++++|+|+. ....    . .   ..+. +.++.+++ .+.+|++++
T Consensus       285 ~~~l~i~d-~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~s  361 (454)
T 2r6a_A          285 NAGIYIDD-TPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIALS  361 (454)
T ss_dssp             SSCEEEEC-CTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred             cCCEEEEC-CCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence            22210000 000011223 45556665322899999999998 4321    1 1   2333 44455543 488887774

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.26  E-value=2.2e-06  Score=85.53  Aligned_cols=70  Identities=13%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             HHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           62 VMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        62 ~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      .+..+||+.. ..+.  ...+++|.  ++.||++|..  +  |+++||||||+ ||+.....++ +++++|++.|.+||+
T Consensus       487 ~L~~vGL~~l~ldR~--~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv  561 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRS--AGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIV  561 (972)
T ss_dssp             HHHHHTCTTSBSSSB--GGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred             HhhhCCCCccccCCc--cccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence            5778898753 2222  34666664  4899999998  7  59999999999 9999999999 999999878999888


Q ss_pred             E
Q 025844          136 V  136 (247)
Q Consensus       136 v  136 (247)
                      |
T Consensus       562 V  562 (972)
T 2r6f_A          562 V  562 (972)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.25  E-value=1.4e-05  Score=61.78  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|+.|+|||||++.+.+
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            6789999999999999999986

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.25  E-value=7.2e-06  Score=71.70  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ..++|+|++|+|||||++.+.|.
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999985

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.25  E-value=2.4e-06  Score=84.54  Aligned_cols=70  Identities=23%  Similarity=0.188  Sum_probs=56.7

Q ss_pred             HHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844           62 VMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (247)
Q Consensus        62 ~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (247)
                      .+..+||+.. .++.  ...++++.  ++.||++|+.  +|  .++||||||+ ||+.....++ +++++|++.|.+||+
T Consensus       362 ~L~~vGL~~l~l~r~--~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~TVIv  436 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRS--TPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNSLFV  436 (842)
T ss_dssp             HHHHTTCTTSBTTCB--GGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred             HHHhCCCCcCCccCC--cCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence            6778898753 2222  34566654  4899999999  88  5999999999 9999999999 999999888989887


Q ss_pred             E
Q 025844          136 V  136 (247)
Q Consensus       136 v  136 (247)
                      |
T Consensus       437 V  437 (842)
T 2vf7_A          437 V  437 (842)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.25  E-value=1.2e-05  Score=63.58  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            56899999999999999999964

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.25  E-value=6.4e-06  Score=67.45  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++|+|++|+|||||++.+.+-.
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            568999999999999999999754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.23  E-value=5.3e-07  Score=72.32  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT   32 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~   32 (247)
                      +.+|+|||||||||++++|.+.+.+..|.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            67899999999999999999988776553

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.22  E-value=1.4e-06  Score=70.45  Aligned_cols=57  Identities=11%  Similarity=0.123  Sum_probs=42.8

Q ss_pred             HHhhhhhHH--HHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           78 MEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        78 ~~~l~~~~~--~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ...+++|.+  ++||++++.  +..|+++|||||++ ||+.+...+. ++++++.+. .+++++
T Consensus        62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~~-~~~ivi  123 (173)
T 3kta_B           62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSKE-SQFIVI  123 (173)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTT-SEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhccC-CEEEEE
Confidence            355677654  788888874  11579999999999 9999999998 888888543 455544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.22  E-value=3.2e-06  Score=77.88  Aligned_cols=98  Identities=14%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      .+.|.||+|+|||||++++++.+...  +..+.+.               +..+.  ..++.+.+.-             
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v---------------~~~~~--~~~~~~~~~~-------------  181 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI---------------TSEKF--LNDLVDSMKE-------------  181 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE---------------EHHHH--HHHHHHHHHT-------------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe---------------eHHHH--HHHHHHHHHc-------------
Confidence            47899999999999999999876432  2222221               11111  1122211110             


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccH-HhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~-LD~-~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                       ... ..+...+..  ++++|++||+.. .+. ..+..++ .+++.+.+.|..++++
T Consensus       182 -~~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIit  233 (440)
T 2z4s_A          182 -GKL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC  233 (440)
T ss_dssp             -TCH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEE
T ss_pred             -ccH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence             011 222333444  789999999988 432 5566666 7788776667666554

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.21  E-value=5.4e-06  Score=63.94  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.20  E-value=2e-06  Score=79.24  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      .+++++|++|+||||++..|++.+...+.+|.+...|+.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~  138 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY  138 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            478999999999999999999998877778999988874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.19  E-value=8e-07  Score=70.79  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+++|+|||||||||+++.|++.+    |.+.+++.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~   42 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL   42 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence            578999999999999999999875    6777776443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.19  E-value=5.3e-06  Score=65.34  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|||||||++.+.+-
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.18  E-value=7.6e-06  Score=71.69  Aligned_cols=97  Identities=11%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~   83 (247)
                      .+.|.||+|+||||+++.+++.+...+..+.+.+               ..+.  ..++...+.              ..
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~---------------~~~~--~~~~~~~~~--------------~~   87 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS---------------ADDF--AQAMVEHLK--------------KG   87 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE---------------HHHH--HHHHHHHHH--------------HT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE---------------HHHH--HHHHHHHHH--------------cC
Confidence            4789999999999999999987765444443332               1111  111111110              00


Q ss_pred             hHHHHHHHHhhcCCCCCEEEEeCCCcccH--HhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        84 ~~~~~la~al~~~~~p~~lilDEPt~LD~--~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .. ..+... ..  ++++|++||+..+..  ..+..+. .+++.+.+.+..++++
T Consensus        88 ~~-~~~~~~-~~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~  137 (324)
T 1l8q_A           88 TI-NEFRNM-YK--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILA  137 (324)
T ss_dssp             CH-HHHHHH-HH--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred             cH-HHHHHH-hc--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence            01 111112 24  689999999988543  5566666 7777776666665554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.18  E-value=1e-05  Score=63.55  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999975

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.17  E-value=9.2e-07  Score=73.02  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHI   35 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i   35 (247)
                      -+++|+|||||||||+++.|++.+++ ..+.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~   42 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM   42 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence            47899999999999999999999876 3334433

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.16  E-value=2e-05  Score=63.48  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.15  E-value=1.3e-05  Score=62.93  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.14  E-value=8.9e-07  Score=71.93  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++|+|+||||||||++.++|..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            678999999999999999999975

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.14  E-value=3e-07  Score=76.20  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC---cCCCceEEE
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI   35 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l---~~~~G~v~i   35 (247)
                      +..++|+||+||||||+++.|++.+   .++.|.++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            3689999999999999999999865   556666554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.14  E-value=9.8e-06  Score=62.56  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999974

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.12  E-value=1.5e-06  Score=75.18  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .++|+||||||||||+++++|.+.+  +.+.+.|.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l   80 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL   80 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence            4899999999999999999999876  6788777543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.10  E-value=5.7e-06  Score=68.27  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      -.+.|.||+|+||||+++.++..+...+..+.+.
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~   86 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYI   86 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            3578999999999999999998766544444443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.09  E-value=3.1e-05  Score=61.42  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.+.+-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            45789999999999999999874

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.09  E-value=2e-06  Score=74.15  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++-++++|++|||||||++.++|-
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999875

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.06  E-value=1.8e-05  Score=75.59  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEecc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNL   38 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~v~i~g~   38 (247)
                      .++|+||||+||||++++|++.+++.. |.+.+.+.
T Consensus        62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~   97 (604)
T 3k1j_A           62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN   97 (604)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred             EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence            578999999999999999999998887 56666554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.05  E-value=2.7e-06  Score=77.32  Aligned_cols=36  Identities=14%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh------------CCcCCCceEEEec
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN   37 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g------------~l~~~~G~v~i~g   37 (247)
                      ...++|+|+||||||||+++|+|            ...|+.|.+.+.|
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            35789999999999999999999            5678889888876

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.03  E-value=1.7e-05  Score=74.40  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh--CCcCCCceEEEeccCCCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g--~l~~~~G~v~i~g~d~~~   42 (247)
                      ++|.|++||||||+++.|..  +.+++.+++.+...|+..
T Consensus       170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            67999999999999999876  556667889998888864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.03  E-value=4.5e-06  Score=67.91  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i   35 (247)
                      -.+.|.||+|+|||||++.++......++.+.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~   87 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI   87 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            468899999999999999999877655555543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.02  E-value=3.3e-05  Score=59.65  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            66899999999999999999964

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.01  E-value=2.4e-06  Score=70.51  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -.++|+||+|||||||++.|.+..+
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3678999999999999999999865

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.99  E-value=1.9e-06  Score=81.67  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEE-Eec
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVN   37 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~-i~g   37 (247)
                      .+++|+|+|||||||++++|+|.+.+++| ++. ++|
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg  406 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG  406 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence            57899999999999999999999999886 675 554

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.98  E-value=3.3e-06  Score=68.85  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +.++|+|+|||||||+++.|++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            5799999999999999999999

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.96  E-value=3.7e-05  Score=71.51  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.+.|.||+|+||||+++++++..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            458899999999999999999854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.95  E-value=6.2e-05  Score=58.38  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|+.|+|||||++.+.+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5689999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.94  E-value=4.2e-06  Score=67.66  Aligned_cols=40  Identities=15%  Similarity=0.012  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      |+.+++|+|++|||||||++.+.+.+++.+.++.....++
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            4567899999999999999999998776655555554443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.94  E-value=0.00013  Score=59.20  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            67899999999999999999853

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.93  E-value=9.1e-05  Score=68.94  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +.++++|+.++|||||++.|.|.
T Consensus        20 ~~I~iiG~~d~GKSTLi~~L~~~   42 (482)
T 1wb1_A           20 INLGIFGHIDHGKTTLSKVLTEI   42 (482)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHHCC
Confidence            57899999999999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.93  E-value=2.7e-05  Score=66.48  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -++++|++|||||||++.++|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5789999999999999999875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.92  E-value=1.6e-05  Score=68.67  Aligned_cols=98  Identities=18%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      ..+.+.||+|+||||+++.+++.+...++.+...+......      ..      ...+   .+|-.+.. .    ..-.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~------~~------~~~~---l~g~~~~~-~----~~~~  107 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME------KH------AVSR---LIGAPPGY-V----GYEE  107 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS------TT------HHHH---HHCCCTTS-T----TTTT
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc------cc------cHHH---hcCCCCcc-c----cccc
Confidence            46899999999999999999999888777766654321110      00      0111   12221110 0    0000


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHH
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH  125 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~  125 (247)
                      .   ..+..++... ...++++||...+++.....+. .+++.
T Consensus       108 ~---~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~  145 (311)
T 4fcw_A          108 G---GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD  145 (311)
T ss_dssp             C---CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred             c---chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence            0   1223334331 4479999999889887776666 55554

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.92  E-value=9.7e-05  Score=69.19  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+++|+|++||||||++..|+..+...+.++.+...|+
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            47899999999999999999977765555788877776

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.92  E-value=5.9e-06  Score=69.78  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~   38 (247)
                      .++|+||||||||||++++++...  .|.+.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~   83 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS   83 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence            578999999999999999999875  567766653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.90  E-value=0.00011  Score=66.53  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.++++|+.|+|||||++.++|...
T Consensus         9 ~~I~vvG~~~~GKSTLi~~L~~~~~   33 (403)
T 3sjy_A            9 VNIGVVGHVDHGKTTLVQAITGIWT   33 (403)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCccc
Confidence            6789999999999999999998654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.89  E-value=7.7e-06  Score=66.94  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.+++|+|++||||||+++.|++.++
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.89  E-value=4.7e-06  Score=67.09  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      .+++|+|++||||||+++.+++.+.+.++.+.+.
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   47 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL   47 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            6789999999999999999999998877777554

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.89  E-value=2.2e-05  Score=66.95  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|+.|+|||||++.+.|
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~   58 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIG   58 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            6789999999999999999997

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.88  E-value=1.1e-06  Score=77.85  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC----cCCCceEEEec
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVN   37 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l----~~~~G~v~i~g   37 (247)
                      -.++|.||||+|||||+++++|.+    .+.+|++...+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~   90 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ   90 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence            357899999999999999999988    55666655443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.88  E-value=6.1e-06  Score=70.86  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~   38 (247)
                      .++|+||||||||||++++++.+.  .|.+.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~  107 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS  107 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred             eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence            589999999999999999999875  577776654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.88  E-value=8e-06  Score=64.72  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |+.+++|.|++||||||+.+.|+.
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHh
Confidence            778899999999999999999997

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.87  E-value=5.9e-06  Score=67.38  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+++|+|++||||||+++.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999999875

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.87  E-value=0.00027  Score=64.88  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .-++++|+.++|||||++.|.+.
T Consensus        18 ~~i~iiG~~d~GKSTL~~~Ll~~   40 (439)
T 3j2k_7           18 VNVVFIGHVDAGKSTIGGQIMYL   40 (439)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            45899999999999999999654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.87  E-value=0.00022  Score=61.83  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|+.|||||||++.|.|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999974

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.86  E-value=6.3e-06  Score=65.92  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEecc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~   38 (247)
                      .+++|+|++||||||+++.|++.+++ .|  .+.+++.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~   42 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD   42 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence            57889999999999999999998876 45  4444543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.86  E-value=3.4e-05  Score=69.22  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~   38 (247)
                      -++.|.||+|||||||+..++......++.+.+...
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            468899999999999999888765545556666543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.84  E-value=1.1e-05  Score=75.77  Aligned_cols=51  Identities=20%  Similarity=0.074  Sum_probs=44.5

Q ss_pred             hhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           82 EDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        82 ~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ++|.  ++.||++++.  +|  ++||||||++ ||+.+...+. ++++.+++ |.+|++|
T Consensus       399 SgG~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~i  454 (517)
T 4ad8_A          399 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVV  454 (517)
T ss_dssp             CSSHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEE
T ss_pred             CHHHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence            6654  3899999999  99  9999999999 9999999998 89999876 7888766

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.83  E-value=4.1e-06  Score=74.03  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETV   29 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~   29 (247)
                      .++|.||+|+|||||++.+++.+.+.
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999987654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.83  E-value=0.00014  Score=64.63  Aligned_cols=23  Identities=17%  Similarity=0.197  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -++.|.||+|||||||+..++..
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999875

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.83  E-value=0.00019  Score=63.90  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++|+|+.|+|||||++.+.|.-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.82  E-value=9.7e-05  Score=57.16  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~   34 (247)
                      -+.|.||+|+|||++.+.+.......++.+.
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            3689999999999999999987665444443

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.81  E-value=7.9e-06  Score=74.78  Aligned_cols=55  Identities=9%  Similarity=0.164  Sum_probs=42.4

Q ss_pred             hhhhHH--HHHHHHhhcC--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        81 l~~~~~--~~la~al~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +++|++  ++||++++..  .+|+++|||||++ ||+..+..+. ++++.+.+.+.+++++
T Consensus       334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~  393 (430)
T 1w1w_A          334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI  393 (430)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred             CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEE
Confidence            556544  7888888820  1799999999999 9999999888 8888875556666655

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.81  E-value=0.00048  Score=59.02  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .-++|+|++|+|||||++.+.|.-
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.80  E-value=5.2e-06  Score=68.36  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEec
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN   37 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g   37 (247)
                      ..+++|+|++||||||+++.|++.+.|..|  .+.+++
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~   62 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   62 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence            357899999999999999999999886667  555554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.79  E-value=1.6e-05  Score=70.89  Aligned_cols=80  Identities=23%  Similarity=0.262  Sum_probs=41.7

Q ss_pred             CCEEEEeCCCcccHHh-HHHHHHHHHHHHHhCCCeEEEEEecccccc--cchhHHhhhhHHHhHHHh--hccCCeeeeec
Q 025844           99 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS  173 (247)
Q Consensus        99 p~~lilDEPt~LD~~~-~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~~--~~~~p~i~vls  173 (247)
                      .++.|.|.|+..+... .+.+...+++.+.+..   +++|++|+...  .++..-+..+...+...-  ..+.|.+.|+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d---~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N  282 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR---VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN  282 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC---EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhcc---EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            5689999999644211 1122224455554422   24445665443  233332222222221111  24789999999


Q ss_pred             ccccccch
Q 025844          174 KMDLVTNK  181 (247)
Q Consensus       174 k~dll~~~  181 (247)
                      |+|+....
T Consensus       283 K~Dl~~~~  290 (342)
T 1lnz_A          283 KMDMPEAA  290 (342)
T ss_dssp             CTTSTTHH
T ss_pred             CccCCCCH
Confidence            99997643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.78  E-value=3.7e-05  Score=67.94  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .+.|.||+|+||||+++.++..+..
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999987643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.75  E-value=0.00011  Score=66.04  Aligned_cols=116  Identities=14%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~   83 (247)
                      ++.|.||+|+|||||+..++......++.+.+...+....           ..     .++.+|+....-...... -..
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-----------~~-----~a~~~g~d~~~l~i~~~~-~~e  138 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-----------PV-----YARALGVNTDELLVSQPD-NGE  138 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----------HH-----HHHHTTCCGGGCEEECCS-SHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-----------HH-----HHHHcCCCHHHceeecCC-cHH
Confidence            5788999999999999887765444456777765543211           00     234445432110000000 011


Q ss_pred             hHHHHHHHHhhcCCCCCEEEEeCCCcccH----H---------hHHHHHHHHHHHH----HhCCCeEEEEE
Q 025844           84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL----F---------THVPVLRNFVDHL----KSRNFNVCAVY  137 (247)
Q Consensus        84 ~~~~~la~al~~~~~p~~lilDEPt~LD~----~---------~~~~~~~~ll~~l----~~~~~~ii~v~  137 (247)
                      .. .++++.+.....++++++|..+.+-+    .         .+...+.++++.|    ++.+.++++++
T Consensus       139 ~~-l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n  208 (366)
T 1xp8_A          139 QA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN  208 (366)
T ss_dssp             HH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             HH-HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence            22 34445554322789999999987321    0         1212223566665    34577776664

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.74  E-value=1.5e-05  Score=62.49  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +.+|+|||||||||++.+|.-
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999984

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.73  E-value=0.0002  Score=63.00  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++.|.||+|||||||+..++...
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHH
Confidence            368899999999999999988653

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.72  E-value=2.4e-05  Score=70.24  Aligned_cols=44  Identities=14%  Similarity=0.076  Sum_probs=36.9

Q ss_pred             hhhhhHH--HHHHHHhh---------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           80 HLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        80 ~l~~~~~--~~la~al~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      .+++|++  ++||++++         .  +|+++|||||++ ||+..+..++ +++..+
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~  320 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASV  320 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHS
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhc
Confidence            5666654  88999999         7  999999999999 9999998887 776665

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.71  E-value=1.8e-05  Score=62.84  Aligned_cols=27  Identities=19%  Similarity=0.144  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      |+.++.|+|++||||||+.+.|+..+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            357889999999999999999998764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.70  E-value=0.00043  Score=58.97  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.+.|.||+|+||||+++.+++.+
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            357899999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.70  E-value=1.8e-05  Score=63.69  Aligned_cols=40  Identities=18%  Similarity=0.043  Sum_probs=32.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      +.+++|+|++|||||||+..+.+.++..+-+|.+...++.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            4578999999999999999999988766557776665553

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.70  E-value=1.9e-05  Score=62.07  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+++|+|++||||||+++.|+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.69  E-value=2.6e-05  Score=65.46  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      ..++|.||+||||||+++.|++.+.+ ++.+...
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            57899999999999999999999988 7777544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.69  E-value=1.9e-05  Score=70.57  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.++++|++|+|||||++.++|..
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999999864

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.68  E-value=0.00031  Score=61.28  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999998875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.66  E-value=0.00061  Score=62.59  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=34.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA   41 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~   41 (247)
                      +.+++++|++|+||||++-.|+..+... +.+|.+...|+.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~  140 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY  140 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            3578889999999999999999888776 668998888874

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.65  E-value=2.4e-05  Score=61.23  Aligned_cols=20  Identities=40%  Similarity=0.590  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSL   22 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l   22 (247)
                      .+++|.||+||||||+++.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.65  E-value=0.0012  Score=59.80  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+.
T Consensus        12 ~~I~iiG~~~~GKSTLi~~L~~~   34 (405)
T 2c78_A           12 VNVGTIGHVDHGKTTLTAALTYV   34 (405)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHhh
Confidence            56899999999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.65  E-value=2.1e-05  Score=62.52  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|++||||||+.+.|+..+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            368899999999999999999754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.63  E-value=0.0005  Score=66.42  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTM   33 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v   33 (247)
                      ..++|+|++|+|||||++.+.+...+  ..|+|
T Consensus        10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A           10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             cEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            46899999999999999999977654  56766

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.62  E-value=2.9e-05  Score=63.21  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+++|+||+||||||+.+.|++.+
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999865

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.62  E-value=8.4e-05  Score=67.88  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV   29 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~   29 (247)
                      -+++|+|||||||||++++|++++.+.
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence            468999999999999999999987664

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.61  E-value=0.00017  Score=62.02  Aligned_cols=24  Identities=29%  Similarity=0.671  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..+.|.||+|+||||+++.+++..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            468899999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.60  E-value=3.1e-05  Score=61.05  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      |+..++|.|++||||||+.+.|+..+
T Consensus         1 m~~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            1 MTEPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            66789999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.59  E-value=2.6e-05  Score=63.83  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+++|+||+||||||+++.|+..++
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCc
Confidence            5688999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.59  E-value=5.1e-05  Score=59.45  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.++|+|++|+|||||++.++|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            678999999999999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.58  E-value=5.2e-05  Score=69.55  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc------------CCCceEEEecc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE------------TVRRTMHIVNL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~------------~~~G~v~i~g~   38 (247)
                      +-++|+|+||+|||||++.++|...            +..|.+.++|.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~  228 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR  228 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence            5689999999999999999999854            44566666554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.57  E-value=4e-05  Score=61.22  Aligned_cols=25  Identities=40%  Similarity=0.659  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ...++|+|++||||||+++.|+..+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999998643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.57  E-value=4.4e-05  Score=60.97  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      |+.+++|.|++||||||+++.|+..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998754

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.56  E-value=9.3e-05  Score=66.35  Aligned_cols=54  Identities=13%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             HhhhhhHH--H------HHHHHhhcCCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           79 EHLEDNLD--D------WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~--~------~la~al~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..+++|++  +      ++|+++..  + |+++|||||++ ||+..+..+. ++++.+.+ +.+++++
T Consensus       279 ~~lS~G~~~~~~lal~la~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~  342 (371)
T 3auy_A          279 DNLSGGEQIAVALSLRLAIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIII  342 (371)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEE
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEE
Confidence            45666654  2      45778887  8 99999999999 9999998888 77777643 3456554

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.56  E-value=5.6e-05  Score=61.02  Aligned_cols=24  Identities=33%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +.+++|+|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            478999999999999999999985

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.56  E-value=1.6e-05  Score=67.28  Aligned_cols=25  Identities=40%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +++++|.||+||||||+++.|++.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.55  E-value=4.2e-05  Score=62.03  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      |+.+++|.|++||||||+.+.|++.+
T Consensus         1 m~~~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            1 MRGIVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            65689999999999999999999854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.55  E-value=1e-05  Score=66.14  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i   35 (247)
                      +++|.|++||||||+++.|+..+...+..+.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~   33 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT   33 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            68899999999999999999988765445543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.55  E-value=0.00021  Score=65.39  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.|-
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~  198 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGE  198 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Confidence            56899999999999999999975

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.55  E-value=4.8e-05  Score=62.64  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +++++|.|++||||||+++.|++
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999998

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.54  E-value=3.6e-05  Score=65.28  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~   38 (247)
                      +..++++|++||||||+.+.|++.+.  .+.+.+++-
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D   66 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGD   66 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecH
Confidence            46789999999999999999998764  244555553

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.53  E-value=0.00019  Score=66.15  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ...++|+|++|+|||||++.+.|
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35789999999999999999987

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.53  E-value=0.00017  Score=55.70  Aligned_cols=42  Identities=10%  Similarity=-0.012  Sum_probs=28.9

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD  140 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d  140 (247)
                      +..++++||...++...+..+. ++++.....+..+|++.-.+
T Consensus        75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEEEEC
T ss_pred             CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEecCCC
Confidence            5679999999998888777766 66665433456666554333

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.53  E-value=0.00028  Score=64.62  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+.
T Consensus         7 ~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            7 LNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            56899999999999999999853

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.53  E-value=4.3e-05  Score=60.98  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +-++|+|++|+|||||++.++|...
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~   27 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKK   27 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC--
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5689999999999999999998643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.52  E-value=9e-05  Score=66.70  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~   23 (247)
                      .++++|+.++|||||++.|.
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999887

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.52  E-value=0.00064  Score=66.01  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+-++|+|+.|+|||||++.+.|.-
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3678999999999999999999853

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.51  E-value=8.6e-05  Score=66.65  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +++|+|||||||||++++|++
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            789999999999999999997

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.51  E-value=4.1e-05  Score=61.22  Aligned_cols=26  Identities=35%  Similarity=0.447  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      |+.+++|+|++||||||+.+.|+..+
T Consensus         1 M~~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            1 MAPKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            66679999999999999999998643

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.51  E-value=0.00011  Score=61.74  Aligned_cols=40  Identities=8%  Similarity=-0.067  Sum_probs=30.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      +..+.+.|+.|+||||++-.++..+...+-+|.+...|+.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q   45 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH   45 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            4678899999999999977777665544447877777763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.50  E-value=5.5e-05  Score=60.37  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      ..++|.|++||||||+++.|+..+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999999987653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.50  E-value=0.00017  Score=63.15  Aligned_cols=32  Identities=16%  Similarity=0.158  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMH   34 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~   34 (247)
                      -.+.|.||+|+|||+|+++++..+. ..+..+.
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~  185 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTT  185 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEE
Confidence            3578999999999999999998665 4333443

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.50  E-value=5.9e-05  Score=60.30  Aligned_cols=25  Identities=28%  Similarity=0.585  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+++|.|++||||||+++.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999998643

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.50  E-value=6.1e-05  Score=60.33  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +..++|+|++||||||+.+.|+..+
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4688999999999999999998754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.50  E-value=5.4e-05  Score=68.04  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .++|+|++|||||||++.++|...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            489999999999999999998754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.49  E-value=9e-05  Score=65.98  Aligned_cols=35  Identities=11%  Similarity=0.152  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~   38 (247)
                      .+.|.|++|+|||||+..++......++.|.+...
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            57899999999999999988766555667766654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.49  E-value=5.9e-05  Score=64.14  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+++|+||+||||||+.+.|++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            468899999999999999999754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.49  E-value=5.7e-05  Score=59.97  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +.++|+|++|+|||||++.++|.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            67899999999999999999974

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.48  E-value=5.6e-05  Score=62.18  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -+.+|+|||||||||++.+|.-.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~   46 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVG   46 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHH
Confidence            36789999999999999998743

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.46  E-value=0.00031  Score=64.31  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ...++|+|++|+|||||++.++|
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~   25 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAG   25 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.46  E-value=6.5e-05  Score=60.57  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            578999999999999999998654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.45  E-value=5.5e-05  Score=60.88  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+++|+|++||||||+++.|+..+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.44  E-value=0.00086  Score=56.12  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+.|.||+|+||||+++.++..+
T Consensus        41 ~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.44  E-value=6.2e-05  Score=68.00  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i   35 (247)
                      -+++|+||||||||||+++++|..   +|.+..
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            478999999999999999999853   576654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.44  E-value=7.3e-05  Score=59.66  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +..++++||+||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578899999999999999998654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.43  E-value=7.5e-05  Score=59.53  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+++|.|++||||||+++.|+..+.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999998654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.43  E-value=0.00055  Score=62.99  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|.+|+|||||++.+.|.
T Consensus       196 ~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          196 IQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ceeEEecCCCCCHHHHHHHHhCC
Confidence            46799999999999999999964

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.43  E-value=9.7e-05  Score=59.89  Aligned_cols=31  Identities=29%  Similarity=0.223  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~   34 (247)
                      ..++|.|++||||||+++.|+..+... |.+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~   35 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELK-RDVY   35 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTT-SCEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhc-CCEE
Confidence            688999999999999999999876653 3443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.41  E-value=0.00014  Score=67.57  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.+.|-
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.40  E-value=9.3e-05  Score=58.55  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++|+|++|+|||||++.++|..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999853

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.40  E-value=7.2e-05  Score=63.80  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|++||||||+++.|++.+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc
Confidence            568999999999999999999865

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.38  E-value=7.6e-05  Score=67.81  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ...++|+|+||+|||||++.++|.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            356899999999999999999987

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.37  E-value=4e-05  Score=72.36  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      +++++||||+||||+++++++.+.+..|.+.+.+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            6889999999999999999999977766665544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.36  E-value=0.00011  Score=63.48  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |+.++.|+|++||||||+.+.|+.
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            778899999999999999999997

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.36  E-value=0.00081  Score=62.39  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.|.+.
T Consensus        34 ~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           34 LSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             EEEEEESCGGGTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56889999999999999999865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.36  E-value=0.00011  Score=63.73  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      +..+.|.||+||||||+++.++..++  .+.+.+.
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is   65 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID   65 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence            46789999999999999999987543  2445444

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.0014  Score=62.74  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.|.+-
T Consensus       168 lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          168 LSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCHHHHHHHHHHh
Confidence            56899999999999999999865

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.35  E-value=9.3e-05  Score=66.62  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      -++|+||+||||||+++.+.+...+.++.+.+.+
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            4689999999999999999988888888887754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.34  E-value=0.00011  Score=61.54  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..+++|+|++||||||+++.|++.+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3679999999999999999999743

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.33  E-value=0.00018  Score=62.96  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCc
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.|.||+|+||||+++.+++.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.33  E-value=0.00017  Score=64.84  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |.+-++|+|.+|+|||||++.++|-
T Consensus         1 m~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            1 MGFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            6678999999999999999999983

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.33  E-value=0.00012  Score=59.37  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +++++|+|++||||||+++.|+..+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.32  E-value=0.00014  Score=58.86  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ...++|.|+.||||||+++.|+..+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999887

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.31  E-value=0.00013  Score=58.53  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+++|+|++||||||+++.|+..+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.31  E-value=0.00017  Score=64.28  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      |+.+++|+||+||||||+.+.|+..+.
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence            456899999999999999999998664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.30  E-value=0.0036  Score=54.87  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.+.|.||+|+||||+++.++..+
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            468899999999999999999875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.30  E-value=0.00013  Score=58.57  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ..++|+|++||||||+.+.|+..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999975

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.29  E-value=0.00022  Score=59.78  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      .++.+.||.||||||++-.++.-+...+..|.+.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            4678899999999997766665544444466665

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.28  E-value=0.00012  Score=59.59  Aligned_cols=22  Identities=36%  Similarity=0.700  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+||+|||||||++.|..-.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5799999999999999987654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.28  E-value=0.00014  Score=61.38  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +++++|.|++||||||+++.|+..+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            47899999999999999999988543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.28  E-value=0.00015  Score=58.95  Aligned_cols=26  Identities=31%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ...++|.|+.||||||+++.|+..+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            36799999999999999999997654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.27  E-value=0.00014  Score=59.57  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .++|+||+||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.27  E-value=0.00016  Score=58.64  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+++|.|++||||||+++.|+..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999998654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.26  E-value=0.00028  Score=56.74  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.|.||+|+||||+++.++..+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.26  E-value=6.1e-05  Score=66.44  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=28.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      +.+.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   83 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN   83 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence            68999999999999999999987766655444443

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.25  E-value=0.0011  Score=58.49  Aligned_cols=117  Identities=12%  Similarity=0.147  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-hCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLY-RHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~-g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      ++.|.||+|||||||+-.++ ...+. .+|.+.+..-.-     .+.+           ..++++|+....-...... -
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~-----s~~~-----------~ra~~lGvd~d~llv~~~~-~   92 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF-----GITP-----------AYLRSMGVDPERVIHTPVQ-S   92 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC-----CCCH-----------HHHHHTTCCGGGEEEEECS-B
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc-----hhhH-----------HHHHHhCCCHHHeEEEcCC-C
Confidence            57899999999999965554 33332 145555543211     0111           1356667654321111100 1


Q ss_pred             hhhHHHHHHHHh--hcCCCCCEEEEeCCCcccH----H-----------hHHHHHHHHHHH----HHhCCCeEEEEE
Q 025844           82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQIEL----F-----------THVPVLRNFVDH----LKSRNFNVCAVY  137 (247)
Q Consensus        82 ~~~~~~~la~al--~~~~~p~~lilDEPt~LD~----~-----------~~~~~~~~ll~~----l~~~~~~ii~v~  137 (247)
                      .+.+..+++..+  +....|+++++|--+++=+    .           .+...+.+.+++    +++.+.+++++.
T Consensus        93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN  169 (333)
T 3io5_A           93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN  169 (333)
T ss_dssp             HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence            111113344454  3323799999998877311    0           222222243433    456788888874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.24  E-value=0.00015  Score=59.91  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++.|+||+||||+|.++.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.24  E-value=0.00016  Score=57.67  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .++|.|+.||||||+++.|+..++
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999998664

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.23  E-value=9.6e-05  Score=58.70  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+++|.|++||||||+.+.|+..+
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            578999999999999999998654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.23  E-value=0.00016  Score=59.20  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .++|+||+||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.22  E-value=0.00022  Score=66.72  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      -.++|+||||+|||||++++++...  .+.+.+.+.+.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~  100 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  100 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence            3589999999999999999999875  57788877543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.22  E-value=0.00016  Score=59.69  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+||+||||||+++.|+..+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            568899999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.21  E-value=0.00017  Score=57.37  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|++||||||+++.++..+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            357899999999999999998553

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.21  E-value=0.00019  Score=59.53  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|++||||||+++.|+..+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            578999999999999999999654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.20  E-value=0.00018  Score=60.59  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -.+.|.||+|+||||+++++++.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcC
Confidence            3578999999999999999998764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.19  E-value=0.0049  Score=60.38  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++|+|..+||||||++.|.|.-
T Consensus        53 ~I~vvG~~saGKSSllnaL~g~~   75 (772)
T 3zvr_A           53 QIAVVGGQSAGKSSVLENFVGRD   75 (772)
T ss_dssp             EEEEEECTTTCHHHHHHHHHSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999953

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.19  E-value=0.00021  Score=58.40  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++++|+|+.||||||+.+.++..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.18  E-value=0.00021  Score=55.91  Aligned_cols=23  Identities=43%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.18  E-value=0.00021  Score=61.62  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +++++|.|++||||||+++.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999995

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.16  E-value=0.00017  Score=61.36  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +..++|+|++||||||+.+.|+..+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            36789999999999999999997644

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.16  E-value=0.00022  Score=58.67  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|++||||||+++.|+..+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            568899999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.16  E-value=0.00023  Score=59.92  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++.++|+||+||||||+++.|+..+
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999998654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.15  E-value=0.00028  Score=57.05  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|++|+|||||++.+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999999986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00032  Score=57.36  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      ..++|+|+.|||||||++.+++..... .++.+.+.++
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~   67 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV   67 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence            578999999999999999999875433 4555555444

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.14  E-value=0.00056  Score=67.20  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .++|+||+||||||++..+.+...+
T Consensus       111 ~vii~gpTGSGKTtllp~ll~~~~~  135 (773)
T 2xau_A          111 IMVFVGETGSGKTTQIPQFVLFDEM  135 (773)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5789999999999998888665433

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.14  E-value=0.00023  Score=57.82  Aligned_cols=26  Identities=27%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..+++|.|+.||||||+++.|+..+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36799999999999999999997654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.14  E-value=0.0028  Score=55.39  Aligned_cols=34  Identities=9%  Similarity=0.178  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      .+.|.|++|+|||||+..++...-..++.+.+..
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s  103 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  103 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            5789999999999999888754333334454443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.14  E-value=0.00027  Score=56.68  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999973

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.13  E-value=0.0026  Score=55.44  Aligned_cols=22  Identities=23%  Similarity=0.170  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      -++.|.||+|||||||+..++.
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998885

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.0051  Score=55.90  Aligned_cols=25  Identities=24%  Similarity=0.577  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.+.||+|+|||++.+++++...
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             CceEEeCCCCCCHHHHHHHHHHhhC
Confidence            4688999999999999999998653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.12  E-value=0.0028  Score=54.37  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+.|.||+|+||||+++.++..+.
T Consensus        69 ~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999998887664

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.11  E-value=0.00025  Score=59.14  Aligned_cols=24  Identities=38%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++.|+||+||||||.++.|+..+
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.09  E-value=0.00021  Score=64.02  Aligned_cols=29  Identities=34%  Similarity=0.502  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G   31 (247)
                      +-++|+|++|+|||||++.|.|......+
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~   66 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDLYPER   66 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            56799999999999999999887544433

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.08  E-value=0.0003  Score=54.24  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.08  E-value=0.00028  Score=58.47  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.07  E-value=0.00031  Score=55.18  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+++|.|+.||||||+.+.|+..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.06  E-value=8.5e-05  Score=64.60  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +++++|.||+||||||+++.++..+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            36899999999999999999997553

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.05  E-value=0.00035  Score=61.78  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      |+..++|+||+||||||+.+.|+..+.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999998653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.04  E-value=0.004  Score=54.82  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      .+.|.||+|+||||+++.++..+......+.+.+
T Consensus        72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~  105 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG  105 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence            6889999999999999999988764434444443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.03  E-value=0.00033  Score=57.43  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.03  E-value=0.0018  Score=69.23  Aligned_cols=119  Identities=16%  Similarity=0.171  Sum_probs=64.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -++.|.||+|+|||||+..++--....++.+.+...+-.               +... .++.+|+....-.+.+.+ ..
T Consensus      1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~---------------~~~l-~a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A         1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA---------------LDPI-YARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC---------------CCHH-HHHHTTCCTTTCEEECCS-SH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc---------------cCHH-HHHHcCCCchhceeecCC-hH
Confidence            468899999999999998887654455666666532110               0000 034444322111111111 11


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHh-------------H----HHHHHHHHHHHHhCCCeEEEEEec
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYLL  139 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~-------------~----~~~~~~ll~~l~~~~~~ii~v~l~  139 (247)
                      +.. .++++.++....|+++++||-..+-+..             .    .+.+.++...+.+.+.+++.++..
T Consensus      1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A         1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp             HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence            122 4445555432389999999987633321             2    223335555555667888777543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.02  E-value=0.00037  Score=54.22  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.+.+-
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            56899999999999999999864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.99  E-value=0.00034  Score=54.04  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            56899999999999999999764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.99  E-value=0.0004  Score=57.18  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|++||||||+++.|+..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999998765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.99  E-value=0.00042  Score=59.64  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+.++++|++|+|||||++.++|..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC
Confidence            4678999999999999999999853

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.98  E-value=0.00041  Score=53.55  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999974

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.98  E-value=0.00045  Score=53.48  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            56899999999999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=96.97  E-value=0.0027  Score=64.80  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.|.+.
T Consensus       297 lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          297 VNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Confidence            56899999999999999999874

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.97  E-value=0.00037  Score=55.32  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.97  E-value=0.00047  Score=53.21  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++++|+.|+|||||++.+.+-.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            568999999999999999998753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.97  E-value=0.00044  Score=53.31  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.97  E-value=0.00045  Score=53.44  Aligned_cols=23  Identities=13%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.96  E-value=0.00047  Score=53.82  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.95  E-value=0.00081  Score=53.60  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.+.+-
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            67899999999999999877753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.94  E-value=0.00054  Score=54.30  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            668999999999999999999863

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.93  E-value=0.0005  Score=54.13  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.93  E-value=0.00043  Score=56.72  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +++++|+|++||||||+.+.++..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.93  E-value=0.00056  Score=52.92  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|+.|+|||||++.+.+
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            6789999999999999999976

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.92  E-value=0.00044  Score=53.95  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.92  E-value=0.00051  Score=52.91  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|+.|+|||||++.+.+
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            5689999999999999999986

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.92  E-value=0.0027  Score=55.24  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G   31 (247)
                      .+.|.||+|+|||++++.+.......++
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~   54 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACSARSDR   54 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHSSCSSS
T ss_pred             cEEEECCCCchHHHHHHHHHHhCcccCC
Confidence            4789999999999999999987654333

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.91  E-value=0.0012  Score=54.62  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      ++|-|.-|+||||+.-.++..+...+.+|.+...|+.
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   39 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD   39 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4558999999999999999988877778999999985

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.91  E-value=0.00045  Score=61.83  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~   23 (247)
                      -+.+|+|||||||||++.+|+
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            367899999999999999987

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.91  E-value=0.00073  Score=55.53  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSL   22 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l   22 (247)
                      |++++.+.|++||||||++..+
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~   25 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSM   25 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHH
Confidence            5678999999999999998664

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.91  E-value=0.00032  Score=55.20  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|++|+|||||++.+.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999998873

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.89  E-value=0.00055  Score=53.29  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999863

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.88  E-value=0.00061  Score=53.15  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999863

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.0022  Score=58.91  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.+.||+|+|||++.+++++...
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            5789999999999999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.86  E-value=0.0006  Score=54.09  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            67899999999999999999873

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.86  E-value=0.0006  Score=56.75  Aligned_cols=24  Identities=29%  Similarity=0.606  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|+|+.||||||+.+.|+..+
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            568899999999999999999764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.86  E-value=0.00061  Score=53.02  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999974

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.86  E-value=0.00071  Score=55.43  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      +.++|+|+.|+|||||++.+++..... ..+...+.+
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d   74 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGD   74 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECC
Confidence            678999999999999999998765443 344444444

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.85  E-value=0.00062  Score=53.67  Aligned_cols=23  Identities=22%  Similarity=0.301  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999974

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.85  E-value=0.00066  Score=54.03  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.83  E-value=0.00061  Score=52.43  Aligned_cols=21  Identities=29%  Similarity=0.339  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      -++++|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999986

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.83  E-value=0.00058  Score=59.22  Aligned_cols=25  Identities=28%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..+.|.||+|+||||+++++++.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHhC
Confidence            3688999999999999999998753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.83  E-value=0.00079  Score=53.30  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +-++|+|++|+|||||++.+.|...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5689999999999999999998654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0027  Score=58.12  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.+.||+|+|||++++++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0022  Score=58.85  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +-++.+.||+|+|||++.+++++...
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            35788999999999999999998753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.81  E-value=0.00076  Score=52.71  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.79  E-value=0.00073  Score=53.22  Aligned_cols=23  Identities=39%  Similarity=0.609  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.79  E-value=0.00073  Score=53.50  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.78  E-value=0.0034  Score=58.41  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.+.|.||+|+|||+++++++...
T Consensus       239 ~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          239 RGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECcCCCCHHHHHHHHHHHh
Confidence            358899999999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.77  E-value=0.00077  Score=53.22  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.77  E-value=0.0013  Score=54.35  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEecc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNL   38 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g-~l~~~~G~v~i~g~   38 (247)
                      -.+.|.|++|+|||||+.-++- .....++.+.+...
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~   67 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL   67 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence            3678999999999999876542 12222345655543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.76  E-value=0.00085  Score=52.74  Aligned_cols=23  Identities=30%  Similarity=0.664  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999854

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.76  E-value=0.0061  Score=53.08  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+.|.||+|+||||+++.++...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            47899999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.00091  Score=53.24  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|+.|+|||||++.+.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            6789999999999999999987

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.75  E-value=0.00083  Score=52.61  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+.|.||+|+||||+++.++..+.
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.75  E-value=0.0009  Score=52.34  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.75  E-value=0.00087  Score=53.77  Aligned_cols=23  Identities=17%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.75  E-value=0.00081  Score=53.39  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.74  E-value=0.0009  Score=56.35  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|||||||++.+.|.
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999974

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.00097  Score=52.84  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|+.|+|||||++.+.+
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999999995

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.73  E-value=0.00087  Score=53.21  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999863

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.72  E-value=0.00095  Score=52.34  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999863

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.72  E-value=0.0031  Score=55.75  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++.|.||+|+|||||+..++..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            4679999999999999999853

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.71  E-value=0.00098  Score=53.21  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.71  E-value=0.001  Score=53.00  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            56899999999999999999864

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.70  E-value=0.045  Score=49.95  Aligned_cols=34  Identities=9%  Similarity=0.210  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEec
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVN   37 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g   37 (247)
                      .+.|.|++|+|||||+..++...... +..|.+..
T Consensus       202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s  236 (444)
T 2q6t_A          202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS  236 (444)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            57899999999999999988765432 33555543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.69  E-value=0.00072  Score=60.79  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +.++|+|++|+|||||++.+++.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999986

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.69  E-value=0.00079  Score=57.51  Aligned_cols=23  Identities=39%  Similarity=0.699  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.|.+-
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            67899999999999999998764

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.68  E-value=0.00027  Score=66.10  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +.+|+|+|||||||++.+|..+
T Consensus        62 ~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           62 FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            6789999999999999999765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.68  E-value=0.00098  Score=53.46  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.68  E-value=0.00068  Score=54.63  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.++|.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            56899999999999999998653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.68  E-value=0.00096  Score=56.76  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.++|-
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            56899999999999999999974

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.68  E-value=0.00094  Score=52.71  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            66899999999999999999974

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.67  E-value=0.0011  Score=58.30  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +..++|+||+|||||||...++..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            3578999999999999999999765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.67  E-value=0.001  Score=52.21  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|+.|+|||||++.+.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            5689999999999999999984

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.66  E-value=0.0011  Score=53.34  Aligned_cols=23  Identities=13%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            56899999999999999999974

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.66  E-value=0.00079  Score=53.53  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.66  E-value=0.001  Score=53.97  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .+.|.||+|+||||+++.++..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            6789999999999999999876543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.66  E-value=0.0011  Score=52.51  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999863

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.65  E-value=0.001  Score=59.52  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..++|+||+||||||+.++|++.+.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3588999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.65  E-value=0.0011  Score=51.82  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.65  E-value=0.0011  Score=52.56  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.64  E-value=0.0012  Score=53.02  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            66899999999999999999874

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.64  E-value=0.0012  Score=52.65  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.64  E-value=0.0011  Score=52.74  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999873

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.63  E-value=0.0013  Score=52.65  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999973

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.0036  Score=57.79  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.+.||+|+|||++.+++++...
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             CceEeeCCCCCcHHHHHHHHHhccC
Confidence            4688999999999999999998654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.63  E-value=0.0012  Score=54.82  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i   35 (247)
                      ..+++.|+.||||||+++.|+..+...+-++..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~   39 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL   39 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence            578899999999999999999988765445543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.62  E-value=0.0011  Score=54.59  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|+.|+|||||++.+.+
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6789999999999999999986

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.62  E-value=0.0011  Score=52.75  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.62  E-value=0.0012  Score=53.13  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.62  E-value=0.0012  Score=52.97  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.+.|.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.0012  Score=53.59  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.+.+-
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.61  E-value=0.0013  Score=53.02  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.60  E-value=0.0012  Score=53.08  Aligned_cols=23  Identities=39%  Similarity=0.637  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999853

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0039  Score=57.09  Aligned_cols=25  Identities=16%  Similarity=0.383  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.+.||+|+|||++.+++++...
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             CCCceECCCCchHHHHHHHHHHHhC
Confidence            5789999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.58  E-value=0.0012  Score=53.64  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|++|+|||||++.+.+-
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999975

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.57  E-value=0.0013  Score=53.26  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999973

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.57  E-value=0.093  Score=48.49  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEec
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVN   37 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g   37 (247)
                      -.+.|.|++|+|||||+..++-..... ++.|.+..
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s  278 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM  278 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence            357899999999999988877544333 44555554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.57  E-value=0.00096  Score=52.26  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .+.|.||+|+||||+++.++..+..
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999987644

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.57  E-value=0.0011  Score=51.95  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999873

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.55  E-value=0.0013  Score=57.41  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ..++|+|++|+|||||++.+.|.
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999974

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.55  E-value=0.0013  Score=53.19  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+-++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3678999999999999999999753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.55  E-value=0.0011  Score=53.00  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|+.|+|||||++.+.+
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999976

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=96.54  E-value=0.0038  Score=51.39  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             CCeEEEEEc-CCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         1 ~~~~~~iiG-pnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      |..+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus         1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   43 (237)
T 1g3q_A            1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM   43 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence            555666665 568999999999998887666689999888853

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.54  E-value=0.0017  Score=57.15  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+++|.||+|||||||...++..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            3578899999999999999999765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.53  E-value=0.0023  Score=53.90  Aligned_cols=31  Identities=26%  Similarity=0.320  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~   34 (247)
                      .+.|.||+|+|||++++.++.......+.+.
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~   61 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSSRWQGPFI   61 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTSTTTTSCEE
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcCccCCCeE
Confidence            4679999999999999999988765444443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.53  E-value=0.0013  Score=52.76  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|+.|+|||||++.+.+
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            6789999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.53  E-value=0.0016  Score=51.93  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            56899999999999999999864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.53  E-value=0.0016  Score=52.17  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999863

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.52  E-value=0.0012  Score=60.03  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.++.++|++||||||+.+.++..+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578899999999999999998643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.52  E-value=0.0012  Score=52.45  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.51  E-value=0.0017  Score=53.40  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i   35 (247)
                      |...++|=|+-||||||.++.|+..+.. +..+..
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~   34 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   34 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEE
Confidence            5556789999999999999999998853 344443

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.50  E-value=0.0049  Score=65.09  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~   38 (247)
                      .+.|.||+|+|||||+..++......++.+.+...
T Consensus       734 lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~  768 (1706)
T 3cmw_A          734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA  768 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence            67899999999999999998877666667766543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.49  E-value=0.0015  Score=52.54  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999973

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.49  E-value=0.0015  Score=53.24  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|+.|+|||||++.+.+
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            5689999999999999999986

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.48  E-value=0.0018  Score=51.88  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+-++++|++|+|||||++.+.+-.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcC
Confidence            3568999999999999999888743

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.0093  Score=52.45  Aligned_cols=25  Identities=8%  Similarity=-0.031  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.|.||+|+|||++++.++..+.
T Consensus        46 ~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           46 KLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             CEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.47  E-value=0.0017  Score=52.68  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++|+|+.|+|||||++.+.+-.
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            568999999999999999999753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.45  E-value=0.001  Score=52.34  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=10.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++|+|+.|+|||||++.+.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5689999999999999998874

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.45  E-value=0.0018  Score=53.64  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +|.+||+|.-||||||..+.+..+
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~~   32 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAAR   32 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHC
Confidence            589999999999999999999873

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.44  E-value=0.0016  Score=54.32  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..++|.|+.||||||+++.|+..++
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            5688999999999999999998774

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.43  E-value=0.0019  Score=51.34  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999964

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.41  E-value=0.0027  Score=56.49  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=19.9

Q ss_pred             EEEE--EcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLV--IGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~i--iGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+.|  .||+|+|||||++.++....
T Consensus        52 ~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           52 NMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            3455  89999999999999987654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.41  E-value=0.0011  Score=56.21  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..++|.|+.||||||+++.|+..+.
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5789999999999999999998764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.40  E-value=0.002  Score=54.99  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.++++|.+|+|||||++.+.|-..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            3688999999999999999997644

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.40  E-value=0.0019  Score=54.38  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-.+|+||+||||||.++.|+..+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            357999999999999999998654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.39  E-value=0.01  Score=63.54  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -++.|.||+|+|||||+..++......++.+.+....-..+           . +    ..+.+|+....-.+.... -.
T Consensus       384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~-----------~-~----~a~~lGvd~~~L~I~~~~-~~  446 (2050)
T 3cmu_A          384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-----------P-I----YARKLGVDIDNLLCSQPD-TG  446 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC-----------H-H----HHHHTTCCTTTCEEECCS-SH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH-----------H-H----HHHHcCCCHHHeEEeCCC-CH
Confidence            36789999999999999988876655556666654322111           0 0    134455432211111000 11


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCcccH--H-----------hHHHHHHHHHHHH----HhCCCeEEEEE
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL--F-----------THVPVLRNFVDHL----KSRNFNVCAVY  137 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~--~-----------~~~~~~~~ll~~l----~~~~~~ii~v~  137 (247)
                      ..+ ..+++.+.....|+++++|.-..+-+  .           .+...+.+.++.|    ++.+.+++++.
T Consensus       447 e~i-l~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlin  517 (2050)
T 3cmu_A          447 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN  517 (2050)
T ss_dssp             HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHH-HHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            122 33444443222799999999987432  0           1222222555555    35688887763

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.38  E-value=0.016  Score=50.07  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..+.+-||+|+||||+++.++..+
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHh
Confidence            356677889999999999999776

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.37  E-value=0.0055  Score=60.36  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -.+.+.||+|+|||||.+++++.+.
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4788999999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.37  E-value=0.0025  Score=56.63  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -.++|+||.|||||||...|+..+.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            3789999999999999999998763

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.37  E-value=0.0022  Score=51.73  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            56899999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.36  E-value=0.0021  Score=54.70  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.+.|-
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999974

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=96.36  E-value=0.0039  Score=52.03  Aligned_cols=42  Identities=14%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             CCeEEEEEc-CCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         1 ~~~~~~iiG-pnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      |.-+++|.| .-|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus         1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   43 (260)
T 3q9l_A            1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL   43 (260)
T ss_dssp             -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            555666655 567999999999998887766689999998854

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.34  E-value=0.0016  Score=54.91  Aligned_cols=30  Identities=20%  Similarity=0.154  Sum_probs=25.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT   32 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~   32 (247)
                      ..++|.|++||||||+++.|+..+...+-+
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~   57 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQNGID   57 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence            568899999999999999999988764333

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.33  E-value=0.00085  Score=54.55  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .+-++|+|+.|+|||||++.+.+-
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            367899999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	3e-41

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  139 bits (351), Expect = 3e-41
 Identities = 51/225 (22%), Positives = 103/225 (45%), Gaps = 7/225 (3%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           + +G AGSGK+T      R+ E   +    VNLD   +   Y  ++D+RE +++E++M E
Sbjct: 4   VFVGTAGSGKTTLTGEFGRYLEDNYKV-AYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
            G GPNG ++   + L +  +++L + L    ++DY++ D PGQ+E F         +++
Sbjct: 63  -GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121

Query: 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE 185
           L         VY+ D + +     +      +L   ++L    +  L+K+DL++ +++  
Sbjct: 122 L----PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 177

Query: 186 DYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE-YSMVSFMPL 229
                E    L+   +        +   +  ++ E    V  + L
Sbjct: 178 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.96
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.96
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.96
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.96
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.94
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.93
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.92
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.92
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.91
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.89
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.87
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.47
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.32
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.55
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.51
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.51
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.46
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.4
d1okkd2	207	GTPase domain of the signal recognition particle r	98.38
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.35
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.3
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.27
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.26
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.25
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.18
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.16
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.16
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.13
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.13
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.12
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.09
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.07
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.06
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.06
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.04
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.97
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.93
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.89
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.84
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.84
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.83
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.82
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.81
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.79
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.79
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.78
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.77
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.76
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.75
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.74
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.73
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.73
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.71
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.71
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.69
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.67
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.66
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.65
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.65
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.63
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.58
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.55
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.55
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.55
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.54
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.54
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.53
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.5
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.49
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.47
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.47
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.46
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.46
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.46
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.44
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.43
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.42
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.41
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.41
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.39
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.39
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.38
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.38
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.31
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.29
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.28
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.27
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.27
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.27
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.26
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.26
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.22
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.21
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.21
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.19
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.18
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.18
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.17
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.17
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.16
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.13
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.09
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.09
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.08
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.07
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.06
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.98
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.96
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.94
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.94
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.93
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.93
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.92
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.9
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.9
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.88
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.84
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.83
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.82
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.8
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.8
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.77
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.76
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.75
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.74
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.74
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.7
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.68
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.67
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.61
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.6
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.6
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.55
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.53
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.53
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.52
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.51
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.51
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.5
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.48
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.48
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.47
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.46
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.46
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.45
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.42
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.41
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.38
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.37
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.37
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.37
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.35
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.35
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.34
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.32
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.31
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.28
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.27
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.26
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.24
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.22
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.18
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.17
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.13
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.09
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.05
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.02
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.94
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.9
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.86
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.85
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.83
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.78
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.75
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.72
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.71
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.67
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.62
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.58
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.47
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.43
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.42
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.4
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.39
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.32
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.32
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.21
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.06
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.04
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.97
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.96
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.95
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.91
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.7
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.67
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.57
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.48
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.29
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.06
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.97
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.97
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.68
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.57
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.44
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.33
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.14
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.08
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.0
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.59
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.08
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.99
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.61
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.53
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.5
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.43
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.91
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.39
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.22
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	88.93
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	87.89
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	87.71
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.64
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.63
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.5
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.43
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.02
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	86.86
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.62
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.07
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	85.72
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.13
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.38
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	84.33
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	83.75
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.59
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	82.1
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	81.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	81.75
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	81.06

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=9.3e-31  Score=221.60  Aligned_cols=154  Identities=16%  Similarity=0.223  Sum_probs=125.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----CCCCCC-------CcccChhhhHh-------------
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS-------------   58 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----~~~~~y-------~~~~~v~e~i~-------------   58 (247)
                      +++|+||||||||||+|+|+|+++|++|+|.++|.+..     ...++|       .+.+||+|++.             
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~  105 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR  105 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHHH
Confidence            67899999999999999999999999999999997653     233444       45679999975             


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNV  133 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~i  133 (247)
                       ++++++.+|+.+......  ..+++|+  +++||||++.  +|++||+||||+ ||+.++..+. +++++++++ |.++
T Consensus       106 ~v~~~l~~~gl~~~~~~~~--~~LSGG~kQRvaiAral~~--~P~illlDEPts~LD~~~~~~i~-~~i~~l~~~~g~tv  180 (240)
T d2onka1         106 RVREMAEKLGIAHLLDRKP--ARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI  180 (240)
T ss_dssp             HHHHHHHTTTCTTTTTCCG--GGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred             HHHHHHHhcCcHhhhhCCh--hhCCHHHHHHHHHHHHHhc--cCCceEecCccccCCHHHHHHHH-HHHHHHHHhcCCeE
Confidence             788999999988766553  4577765  4999999999  999999999999 9999999998 999998654 8888


Q ss_pred             EEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      ++|    +|.+.+...+++               ++.++.+..++...
T Consensus       181 i~v----tHd~~~~~~~ad---------------ri~vm~~G~ii~~G  209 (240)
T d2onka1         181 LHV----THDLIEAAMLAD---------------EVAVMLNGRIVEKG  209 (240)
T ss_dssp             EEE----ESCHHHHHHHCS---------------EEEEEETTEEEEEE
T ss_pred             EEE----eCCHHHHHHhCC---------------EEEEEECCEEEEEe
Confidence            766    587877777777               55566666665543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=6.9e-31  Score=222.56  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCC-------CCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~-------y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..     +.++       .++.+||+|++.            
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  112 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE  112 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHH
Confidence            3789999999999999999999999999999999987532     2233       345789999885            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (247)
                          ++++++.++|.+......  ..+++|+  +++||++|+.  +|++|||||||+ ||+.++..+. ++++++++ .|
T Consensus       113 ~~~~~~~~l~~~~l~~~~~~~~--~~LSGGq~QRvaiAraL~~--~P~iLllDEPts~LD~~~~~~i~-~ll~~l~~~~g  187 (239)
T d1v43a3         113 IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK  187 (239)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhhhcCCh--hhCCHHHHHHHHHHhhhcc--CCCceeecCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                678999999987655553  3566654  5999999999  999999999999 9999999999 99999865 48


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      .|+++|    +|.+.+...+++               .+.++.+..++...
T Consensus       188 ~tii~v----THd~~~a~~~~d---------------ri~vm~~G~iv~~G  219 (239)
T d1v43a3         188 VTTIYV----THDQVEAMTMGD---------------RIAVMNRGQLLQIG  219 (239)
T ss_dssp             CEEEEE----ESCHHHHHHHCS---------------EEEEEETTEEEEEE
T ss_pred             CeEEEE----eCCHHHHHHhCC---------------EEEEEECCEEEEEc
Confidence            999776    588888888777               56677777666554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.97  E-value=1.6e-30  Score=219.03  Aligned_cols=161  Identities=14%  Similarity=0.178  Sum_probs=130.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..            |+...++.+||+|++.            
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~  106 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccHHH
Confidence            3789999999999999999999999999999999988743            3333456789999985            


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (247)
                       +.++++.+++.+......  ..+++|+  +++|||||+.  +|++||+||||+ ||+.++..+. ++++++.+ .|.++
T Consensus       107 ~~~~~l~~~~l~~~~~~~~--~~LSGG~~QRvaiAraL~~--~P~iLllDEPts~LD~~~~~~i~-~~l~~l~~~~g~ti  181 (229)
T d3d31a2         107 RVLDTARDLKIEHLLDRNP--LTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV  181 (229)
T ss_dssp             HHHHHHHHTTCTTTTTSCG--GGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhcchhhHhCCh--hhCCHHHhcchhhhhhhhc--cCCceeecCCCcCCCHHHHHHHH-HHHHHHHhcCCcEE
Confidence             788999999988765553  4577665  4999999999  999999999999 9999999998 99999864 58888


Q ss_pred             EEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhhc
Q 025844          134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYL  188 (247)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~  188 (247)
                      +++    +|.+.+...+++               .+.++.+..++... .-++++
T Consensus       182 i~v----tHd~~~~~~~~d---------------rv~vm~~G~iv~~g-~~~el~  216 (229)
T d3d31a2         182 LHI----THDQTEARIMAD---------------RIAVVMDGKLIQVG-KPEEIF  216 (229)
T ss_dssp             EEE----ESCHHHHHHHCS---------------EEEEESSSCEEEEE-CHHHHH
T ss_pred             EEE----cCCHHHHHHhCC---------------EEEEEECCEEEEEc-CHHHHH
Confidence            766    577777777776               56677777777654 334433

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=4.2e-31  Score=223.10  Aligned_cols=155  Identities=14%  Similarity=0.109  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCC-------CCcccChhhhHh------------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~-------y~~~~~v~e~i~------------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     +.++       ..+.+|++|++.            
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~  106 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  106 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------CH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHH
Confidence            4789999999999999999999999999999999987642     2233       345678888875            


Q ss_pred             ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 025844           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN  130 (247)
Q Consensus        59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~  130 (247)
                          ++++++.+++.+...+..  ..+++|+  +++|||+|+.  +|++||+||||+ ||+.++..++ ++++++. +.|
T Consensus       107 ~~~~v~~~l~~~~l~~~~~~~~--~~LSGGqkQRvaiAraL~~--~P~illlDEPts~LD~~~~~~i~-~~l~~l~~~~g  181 (232)
T d2awna2         107 INQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG  181 (232)
T ss_dssp             HHHHHHHHHHHC-----------------------CHHHHHHT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCChhhhhCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHHhcC
Confidence                788999999987665553  4577765  4999999999  999999999999 9999999998 8888875 468


Q ss_pred             CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      .|+++|    +|.+.+...+++               .+-++.+..++...
T Consensus       182 ~tii~v----THd~~~a~~~~d---------------ri~vm~~G~iv~~G  213 (232)
T d2awna2         182 RTMIYV----THDQVEAMTLAD---------------KIVVLDAGRVAQVG  213 (232)
T ss_dssp             CEEEEE----ESCHHHHHHHCS---------------EEEEEETTEEEEEE
T ss_pred             CEEEEE----eCCHHHHHHhCC---------------EEEEEECCEEEEEe
Confidence            998776    477777777777               44566666555443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.96  E-value=3.3e-30  Score=218.54  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=125.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------C-------CCCCCCcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------A-------ENFDYPVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~-------~~~~y~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+|+|+|+++|++|+|+++|.++.           .       |+....+.+||+|++.      
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~  109 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR  109 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc
Confidence            478999999999999999999999999999999996641           1       2333356789999985      


Q ss_pred             ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (247)
Q Consensus        59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (247)
                                ++++++.+++.+......  ..+++|+  +++|||||+.  +|++||+||||+ ||+.++..++ +++++
T Consensus       110 ~~~~~e~~~~v~~~l~~~~l~~~~~~~p--~~LSGGqkQRv~IAraL~~--~P~iLllDEPt~~LD~~~~~~i~-~~l~~  184 (240)
T d1g2912         110 KVPRQEIDQRVREVAELLGLTELLNRKP--RELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKK  184 (240)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCGGGTTCCG--GGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEecCCCcccCHHHHHHHH-HHHHH
Confidence                      788999999987655443  4577765  4999999999  999999999999 9999999999 99999


Q ss_pred             HHhC-CCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      +.++ |.++++|    +|.+.+...+|+               .+-|+.+..++...
T Consensus       185 l~~~~g~tvi~v----THd~~~~~~~~d---------------rv~vm~~G~iv~~G  222 (240)
T d1g2912         185 LQRQLGVTTIYV----THDQVEAMTMGD---------------RIAVMNRGVLQQVG  222 (240)
T ss_dssp             HHHHHTCEEEEE----ESCHHHHHHHCS---------------EEEEEETTEEEEEE
T ss_pred             HHhccCCEEEEE----cCCHHHHHHhCC---------------EEEEEECCEEEEEc
Confidence            8654 9999777    588877777777               45566666665543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.3e-31  Score=223.04  Aligned_cols=143  Identities=15%  Similarity=0.226  Sum_probs=119.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------------CCCCCCcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------------~~~~y~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...                 |+....+.+||+|++.       
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~  111 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  111 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999987532                 2333345678999885       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               +.++++.+||.+......  ..+++|+  +++|||||+.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       112 ~~~~~~~~~v~~~L~~vgL~~~~~~~~--~~LSGG~~QRvaiAraL~~--~P~lLllDEPt~~LD~~~~~~i~-~~l~~l  186 (240)
T d3dhwc1         112 TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI  186 (240)
T ss_dssp             CCTTHHHHHHHHHHHHHSTTTTTSSCB--SCCCHHHHHHHHHHHHHHT--CCSEEEEESGGGSSCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHhhhhcc--CCCeEEeccccccCCHHHhhHHH-HHHHHH
Confidence                     789999999987755443  3567664  4999999999  999999999999 9999999999 999998


Q ss_pred             HhC-CCeEEEEEecccccccchhHHhhhh
Q 025844          127 KSR-NFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      +++ |.++++|    +|.+.....+|+.+
T Consensus       187 ~~~~g~tvi~v----THdl~~~~~~~dri  211 (240)
T d3dhwc1         187 NRRLGLTILLI----THEMDVVKRICDCV  211 (240)
T ss_dssp             HHHHCCEEEEE----BSCHHHHHHHCSEE
T ss_pred             HhccCCEEEEE----cCCHHHHHHhCCEE
Confidence            764 9999777    58888888887743

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.96  E-value=4.4e-30  Score=217.81  Aligned_cols=155  Identities=19%  Similarity=0.163  Sum_probs=125.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----------CCCCC-------CCcccChhhhHh-------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFD-------YPVAMDIRELIS-------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----------~~~~~-------y~~~~~v~e~i~-------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..          .++++       .++.+||+|++.       
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~  111 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhc
Confidence            378999999999999999999999999999999997642          12233       355789999985       


Q ss_pred             ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                               ++++++.+||.+......  ..+++|+  +++|||||+.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       112 ~~~~~~~~~v~~~l~~~gL~~~~~~~p--~~LSGGqkQRvaiARaL~~--~P~llllDEPt~~LD~~~~~~i~-~~i~~l  186 (242)
T d1oxxk2         112 MSKEEIRKRVEEVAKILDIHHVLNHFP--RELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV  186 (242)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcChHhhhhCCh--hhCCHHHHhHHHHHhHHhh--cccceeecCCccCCCHHHHHHHH-HHHHHH
Confidence                     789999999987655553  4577665  4999999999  999999999999 9999999999 999998


Q ss_pred             Hh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      .+ .|.++++|    +|.+.+...+|+               .+-++.+..++...
T Consensus       187 ~~~~g~tvi~v----THd~~~~~~~~d---------------ri~vm~~G~iv~~g  223 (242)
T d1oxxk2         187 QSRLGVTLLVV----SHDPADIFAIAD---------------RVGVLVKGKLVQVG  223 (242)
T ss_dssp             HHHHCCEEEEE----ESCHHHHHHHCS---------------EEEEEETTEEEEEE
T ss_pred             HhccCCEEEEE----ECCHHHHHHhCC---------------EEEEEECCEEEEEc
Confidence            65 48998777    477777777766               55667776666544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=2.8e-29  Score=211.67  Aligned_cols=141  Identities=18%  Similarity=0.180  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------CCCCCCcccChhhhHh------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------~~~~y~~~~~v~e~i~------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|+++|.+...                  |+....+.+||+|++.      
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~  111 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHh
Confidence            3789999999999999999999999999999999987632                  2222345778988864      


Q ss_pred             -------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (247)
Q Consensus        59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (247)
                                   +.++++.++|.+.....++ ..+++|+  +++|||||+.  +|++||+||||+ ||+.++..++ ++
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-~~LSGGqkQRvaIAraL~~--~P~lLllDEPTs~LD~~~~~~i~-~~  187 (230)
T d1l2ta_         112 YRGAMSGEERRKRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALAN--NPPIILADQPTGALDSKTGEKIM-QL  187 (230)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HH
T ss_pred             ccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-hhCCHHHHHHHHHHhhhhc--CCCEEEecCCccccCHHHHHHHH-HH
Confidence                         5678888888653222222 4577764  5999999999  999999999999 9999999999 99


Q ss_pred             HHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844          123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      ++++.+ .|.|+++|    +|.+.. ..+|+
T Consensus       188 l~~l~~~~g~tii~v----THd~~~-a~~~d  213 (230)
T d1l2ta_         188 LKKLNEEDGKTVVVV----THDINV-ARFGE  213 (230)
T ss_dssp             HHHHHHTTCCEEEEE----CSCHHH-HTTSS
T ss_pred             HHHHHHhhCCEEEEE----CCCHHH-HHhCC
Confidence            999865 48888777    355432 24555

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.3e-29  Score=213.59  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=116.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCCCcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y~~~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..             +...+++++++.|++.           
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~  108 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS  108 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHH
Confidence            4789999999999999999999999999999999987643             2233356778888874           


Q ss_pred             -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (247)
Q Consensus        59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (247)
                           ++++++.+++.+.....  ...+++|++  ++||++++.  +|+++||||||+ ||+.+++.+. +++++++++|
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~--~~~lSgG~~qrv~iA~al~~--~p~illLDEPt~gLD~~~~~~i~-~~i~~~~~~g  183 (238)
T d1vpla_         109 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG  183 (238)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHHHHhhh--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHhcC
Confidence                 56788888997765444  345676654  899999999  999999999999 9999999988 9999998889


Q ss_pred             CeEEEEEecccccccchhHHhh
Q 025844          131 FNVCAVYLLDSQFITDVTKFIS  152 (247)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (247)
                      .+|+++    +|.+.+...+|+
T Consensus       184 ~tii~~----tH~l~~~~~~~d  201 (238)
T d1vpla_         184 LTILVS----SHNMLEVEFLCD  201 (238)
T ss_dssp             CEEEEE----ECCHHHHTTTCS
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            998665    588887777777

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=2e-29  Score=214.26  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=121.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..               +....++.+|+++++.         
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~  112 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK  112 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCH
Confidence            4789999999999999999999999999999999988643               2223355788988874         


Q ss_pred             ------HHHHHHHc-CCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           59 ------LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        59 ------~~~~l~~~-~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                            ++++++.+ ++.+......  ..+++|++  ++||+|++.  +|++|||||||+ ||+.+++.++ ++++++++
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~LSGG~~Qrv~iAraL~~--~P~lLllDEPt~gLD~~~~~~i~-~~i~~l~~  187 (240)
T d1ji0a_         113 EGIKRDLEWIFSLFPRLKERLKQLG--GTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ  187 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSBS--SSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhChHHHHhCch--hhCCHHHHHHHHHHHHHHh--CCCEeeecCCCcCCCHHHHHHHH-HHHHHHHh
Confidence                  34555554 4554433332  34666654  999999999  999999999999 9999999999 99999988


Q ss_pred             CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      +|.+++++    +|.+.+...+++               .+.|+.+..++...
T Consensus       188 ~g~til~~----tH~l~~~~~~~d---------------rv~vl~~G~iv~~g  221 (240)
T d1ji0a_         188 EGTTILLV----EQNALGALKVAH---------------YGYVLETGQIVLEG  221 (240)
T ss_dssp             TTCCEEEE----ESCHHHHHHHCS---------------EEEEEETTEEEEEE
T ss_pred             CCCEEEEE----eCCHHHHHHhCC---------------EEEEEECCEEEEEc
Confidence            89998766    477777777777               55667776666544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=7.9e-29  Score=212.55  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------------------CCCCCCcccChhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIRE   55 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------------------~~~~y~~~~~v~e   55 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...                           |+....+.+++.+
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~e  108 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  108 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcch
Confidence            4789999999999999999999999999999999987531                           2333355678888


Q ss_pred             hHh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844           56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (247)
Q Consensus        56 ~i~-----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~  115 (247)
                      ++.                 +.++++.+++.+.....++ ..+++|+  +++||++|+.  +|++||+||||+ ||+.++
T Consensus       109 nv~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-~~LSGG~~QRv~iAraL~~--~P~llilDEPT~gLD~~~~  185 (258)
T d1b0ua_         109 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-VHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPELV  185 (258)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-GGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHHH
T ss_pred             hhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-ccccHHHHHHHHHHHHHhc--CCCEEEeccccccCCHHHH
Confidence            874                 6788999999764322222 4567664  4999999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      ..++ +++++++++|.++++|    +|.+.....+|+               .+-|+.+..++...
T Consensus       186 ~~i~-~ll~~l~~~g~til~v----tHdl~~~~~~ad---------------ri~vm~~G~iv~~g  231 (258)
T d1b0ua_         186 GEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS---------------HVIFLHQGKIEEEG  231 (258)
T ss_dssp             HHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCS---------------EEEEEETTEEEEEE
T ss_pred             HHHH-HhhhhhcccCCceEEE----eCCHHHHHHhCC---------------EEEEEECCEEEEEc
Confidence            9999 8999998889888766    577777777776               56677777666544

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=1.5e-28  Score=210.46  Aligned_cols=154  Identities=19%  Similarity=0.189  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~---------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...               |.....+++|+.|++.         
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~  110 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES  110 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhcccc
Confidence            4789999999999999999999999999999999987642               1122244678888763         


Q ss_pred             --------------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844           59 --------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (247)
Q Consensus        59 --------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~  115 (247)
                                          +.++++.+++.+.....  ...+++|+  ++.||++++.  +|++|||||||+ ||+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~Qrv~iAraL~~--~P~llilDEPt~gLD~~~~  186 (254)
T d1g6ha_         111 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA  186 (254)
T ss_dssp             HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred             chhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc--hhhCCcHHHHHHHHHHHHHh--CcCchhhcCCcccCCHHHH
Confidence                                45677788887665443  24567664  4999999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccc
Q 025844          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  180 (247)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~  180 (247)
                      +.++ +++++++++|.+|+++    +|.+.+...+|+               ++.|+.+..++..
T Consensus       187 ~~i~-~~i~~l~~~g~til~v----sHdl~~~~~~~D---------------rv~vm~~G~iv~~  231 (254)
T d1g6ha_         187 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYID---------------HLYVMFNGQIIAE  231 (254)
T ss_dssp             HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCS---------------EEEEEETTEEEEE
T ss_pred             HHHH-HHHHHHHHCCCEEEEE----eCcHHHHHHhCC---------------EEEEEeCCEEEEE
Confidence            9999 9999998889998766    577877777777               5556666666543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=8.7e-27  Score=192.83  Aligned_cols=128  Identities=16%  Similarity=0.158  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCCCcccChhhhHh--------------HH
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------LE   60 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y~~~~~v~e~i~--------------~~   60 (247)
                      +++|+||||||||||+++|+|+++|++|+|.++|.++..         +...+++.+++++++.              +.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~  108 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM  108 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHH
Confidence            689999999999999999999999999999999987642         2223345677887764              45


Q ss_pred             HHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844           61 DVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (247)
Q Consensus        61 ~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (247)
                      +.++.+++.+....   ...+++|+  ++.||++++.  +|+++||||||+ ||+.+++.++ +.+.++.+++..+++++
T Consensus       109 ~~l~~~~~~~~~~~---~~~LSgG~~qrv~ia~al~~--~~~llllDEPt~gLD~~~~~~i~-~~l~~~~~~~~~~ii~~  182 (200)
T d1sgwa_         109 DALESVEVLDLKKK---LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIISS  182 (200)
T ss_dssp             HHHHHTTCCCTTSB---GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEEE
T ss_pred             HHHHHcCCcccccc---cCcCCCcHHHHHHHHHHHhc--CCCEEEEcCcccccCHHHHHHHH-HHHHHHHhCCCEEEEEE
Confidence            66677776443222   34577765  4899999999  999999999999 9999999999 66666654433444444

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.93  E-value=8.9e-26  Score=191.79  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++| +|     .-|+++++.           
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~  108 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED  108 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecccccccchhh
Confidence            4689999999999999999999999999999999987632       33444 22     337888864           


Q ss_pred             HHHHHHHcCCCCCCchh-hhH--------HhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844           59 LEDVMEELGLGPNGGLI-YCM--------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        59 ~~~~l~~~~L~~~~~~~-~~~--------~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (247)
                      +.+.++..++....... ...        ..+++|+  +++||||++.  +|+++||||||+ ||+.+.+.++ +.++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~--~p~ililDEpts~LD~~~~~~i~-~~l~~l  185 (242)
T d1mv5a_         109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL  185 (242)
T ss_dssp             HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred             HHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHHHH
Confidence            34555555443211100 000        1256654  4999999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      . ++.|+++|    +|.+... ..++               +|-|+.+..++...
T Consensus       186 ~-~~~Tvi~i----tH~l~~~-~~~D---------------~i~vl~~G~iv~~G  219 (242)
T d1mv5a_         186 M-KGRTTLVI----AHRLSTI-VDAD---------------KIYFIEKGQITGSG  219 (242)
T ss_dssp             H-TTSEEEEE----CCSHHHH-HHCS---------------EEEEEETTEECCCS
T ss_pred             c-CCCEEEEE----ECCHHHH-HhCC---------------EEEEEECCEEEEEC
Confidence            5 47888766    4554322 2233               66778777777655

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.5e-26  Score=196.44  Aligned_cols=130  Identities=18%  Similarity=0.129  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++|      ..+.|+++++.          +
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~  109 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV  109 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCccccHHHH
Confidence            3689999999999999999999999999999999988643       12222      22458888875          3


Q ss_pred             HHHHHHcCCC------CCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~------~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .+.++..++.      |.+...   .....+++|+  +++||||++.  +|+++||||||+ ||+.+.+.++ +.++++.
T Consensus       110 ~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~--~p~ililDEpts~LD~~~~~~i~-~~l~~l~  186 (241)
T d2pmka1         110 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC  186 (241)
T ss_dssp             HHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhc--ccchhhhhCCccccCHHHHHHHH-HHHHHHh
Confidence            3344433321      211100   0012456654  4999999999  999999999999 9999999999 8888885


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      + ++|+++|
T Consensus       187 ~-~~Tvi~i  194 (241)
T d2pmka1         187 K-GRTVIII  194 (241)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCEEEEE
Confidence            4 7888776

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.9e-26  Score=192.25  Aligned_cols=144  Identities=17%  Similarity=0.218  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~----------   58 (247)
                      -+++|+||||||||||+++|+|+. |++|+|.+.|.+...              +....+...++.+++.          
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  104 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE  104 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHHH
Confidence            478999999999999999999975 688999999987532              1111122335555543          


Q ss_pred             -HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcC-----CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY-----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (247)
Q Consensus        59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~-----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (247)
                       ++++++.+++.+..+...  ..+++|+  +++||+++++.     .+|+++||||||+ ||+.++..+. +++++++++
T Consensus       105 ~~~~~~~~~~l~~~~~~~~--~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~  181 (231)
T d1l7vc_         105 LLNDVAGALALDDKLGRST--NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQ  181 (231)
T ss_dssp             HHHHHHHHTTCTTTTTSBG--GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHT
T ss_pred             HHHHHHHhcCCHhHhCcCh--hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhC
Confidence             678888999987655543  3567664  48999999741     1568999999999 9999998888 999999888


Q ss_pred             CCeEEEEEecccccccchhHHhhhh
Q 025844          130 NFNVCAVYLLDSQFITDVTKFISGC  154 (247)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s~~  154 (247)
                      |.+|+++    +|.+.+...+++.+
T Consensus       182 g~tii~v----tHdl~~~~~~~dri  202 (231)
T d1l7vc_         182 GLAIVMS----SHDLNHTLRHAHRA  202 (231)
T ss_dssp             TCEEEEC----CCCHHHHHHHCSBC
T ss_pred             CCEEEEE----eCCHHHHHHHCCEE
Confidence            9888655    68888888887744

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-26  Score=197.93  Aligned_cols=154  Identities=16%  Similarity=0.158  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~-----------   58 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.++|      ..+.|+++++.           
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~  120 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE  120 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcccchHHH
Confidence            3689999999999999999999999999999999987632       12222      11347888875           


Q ss_pred             H---------HHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 L---------EDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 ~---------~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                      .         .+.++.+  ++....+..  ...+++|+  +++||||++.  +|+++||||||+ ||+.+...++ ++++
T Consensus       121 ~~~~~~~~~~~~~i~~l~~g~~~~i~~~--~~~LSGGqkQRvaiARal~~--~p~ililDEpTs~LD~~~~~~i~-~~l~  195 (251)
T d1jj7a_         121 ITAAAVKSGAHSFISGLPQGYDTEVDEA--GSQLSGGQRQAVALARALIR--KPCVLILDDATSALDANSQLQVE-QLLY  195 (251)
T ss_dssp             HHHHHHHHTCHHHHHTSTTGGGCBCCSS--CSSSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHhccccchhhHhcc--CccCChhHceEEEEeecccc--CCcEEEecCcCcccChhhHHHHH-HHHH
Confidence            1         1222222  111111110  12366654  4999999999  999999999999 9999999988 8888


Q ss_pred             HHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844          125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       125 ~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~  181 (247)
                      ++.+ .++|+++|    +|.+.. ...++               .|-|+.+.-++...
T Consensus       196 ~l~~~~~~Tvi~i----tH~l~~-~~~aD---------------rI~vl~~G~iv~~G  233 (251)
T d1jj7a_         196 ESPERYSRSVLLI----TQHLSL-VEQAD---------------HILFLEGGAIREGG  233 (251)
T ss_dssp             TCGGGGGCEEEEE----CSCHHH-HHTCS---------------EEEEEETTEEEEEE
T ss_pred             HHhhhcCCEEEEE----eCCHHH-HHhCC---------------EEEEEECCEEEEEC
Confidence            7754 47888777    355431 22333               55667666665544

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.92  E-value=8.8e-26  Score=192.98  Aligned_cols=128  Identities=17%  Similarity=0.131  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------   58 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.++..       ..++| +|     .-++++++.           
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~  121 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ  121 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHH
Confidence            3689999999999999999999999999999999987643       12233 11     335666653           


Q ss_pred             HHHHHHHcCCC-----------CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844           59 LEDVMEELGLG-----------PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (247)
Q Consensus        59 ~~~~l~~~~L~-----------~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (247)
                      +.++++..++.           ...+..  ...+++|+  +++||||++.  +|++|||||||+ ||+.+...++ +.++
T Consensus       122 i~~a~~~~~l~~~i~~l~~gl~t~~~~~--~~~LSGGqkQRvaiARal~~--~p~ililDEpts~LD~~~~~~i~-~~l~  196 (253)
T d3b60a1         122 IEEAARMAYAMDFINKMDNGLDTIIGEN--GVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALD  196 (253)
T ss_dssp             HHHHHHTTTCHHHHHHSTTGGGSBCCTT--SCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhHHHHHHhccccchhhhcCC--CCCcCHHHHHHHHHHHHHhc--CCCEEEeccccccCCHHHHHHHH-HHHH
Confidence            33333333221           111100  12356554  4999999999  999999999999 9999999998 8888


Q ss_pred             HHHhCCCeEEEE
Q 025844          125 HLKSRNFNVCAV  136 (247)
Q Consensus       125 ~l~~~~~~ii~v  136 (247)
                      ++.+ ++|+++|
T Consensus       197 ~l~~-~~Tvi~i  207 (253)
T d3b60a1         197 ELQK-NRTSLVI  207 (253)
T ss_dssp             HHHT-TSEEEEE
T ss_pred             Hhcc-CCEEEEE
Confidence            8854 7788776

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.91  E-value=2e-25  Score=190.84  Aligned_cols=130  Identities=15%  Similarity=0.115  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~   59 (247)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.|...       +.++|      ....|+++++.          +
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~  124 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV  124 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHH
Confidence            3689999999999999999999999999999999987642       22333      22458999885          4


Q ss_pred             HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844           60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (247)
                      .++++..++..      .+-..   ..-..+++|+  +++||||++.  +|+++||||||+ ||+.+...++ +.++.+.
T Consensus       125 ~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~--~p~ililDEpts~LD~~t~~~i~-~~l~~l~  201 (255)
T d2hyda1         125 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVLS  201 (255)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHHh
Confidence            55666555421      11000   0012355554  4999999999  999999999999 9999998888 8888875


Q ss_pred             hCCCeEEEE
Q 025844          128 SRNFNVCAV  136 (247)
Q Consensus       128 ~~~~~ii~v  136 (247)
                      + +.|+|+|
T Consensus       202 ~-~~TvI~i  209 (255)
T d2hyda1         202 K-DRTTLIV  209 (255)
T ss_dssp             T-TSEEEEE
T ss_pred             c-CCEEEEE
Confidence            4 6787766

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.6e-24  Score=183.42  Aligned_cols=131  Identities=20%  Similarity=0.192  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHh---------HHHHHHHcCCC----
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLG----   69 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~----   69 (247)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.-.-....++...-++++++.         ..++++..++.    
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~  142 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDIT  142 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHH
Confidence            36899999999999999999999999999999988421111112222337888774         34444443321    


Q ss_pred             --CCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           70 --PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        70 --~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                        +.+...   .....+++|+  +++||||++.  +|+++||||||+ ||+.+...+++.++..+ ..+.++++|
T Consensus       143 ~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~--~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~i  214 (281)
T d1r0wa_         143 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILV  214 (281)
T ss_dssp             TSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEE
T ss_pred             hchhhhhhhhhhhccCCCHHHHHHHHHHHHHHh--CccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEE
Confidence              111000   0011356554  4999999999  999999999999 99999888873344443 346777666

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=1.5e-21  Score=162.85  Aligned_cols=230  Identities=22%  Similarity=0.374  Sum_probs=170.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .+++|+||.|||||||++.|..+.. ..+.+.+.|.||+..+.+|....+.++.+...+.++.. .+++++...|.....
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG-YGPNGAIVESYDRLM   78 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTT-CCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhh-hccCCchhhhhHhHH
Confidence            4789999999999999999998765 56788899999999988888888899988888888654 566666666655555


Q ss_pred             hhHHHHHHH---HhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhH
Q 025844           83 DNLDDWLAE---ELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS  159 (247)
Q Consensus        83 ~~~~~~la~---al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (247)
                      ... .++.+   ....  +++++++|.|++.++.........+.+.    ...-+++++.|+....++..+.+..+....
T Consensus        79 ~~~-~~~~~~~~~~~~--~~~~~~id~~g~~~~~~~~~~~~~~~~~----~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~  151 (244)
T d1yrba1          79 EKF-NEYLNKILRLEK--ENDYVLIDTPGQMETFLFHEFGVRLMEN----LPYPLVVYISDPEILKKPNDYCFVRFFALL  151 (244)
T ss_dssp             TTH-HHHHHHHHHHHH--HCSEEEEECCSSHHHHHHSHHHHHHHHT----SSSCEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHhhcc--ccceeeeccccchhHHHHHHHHHHHHhh----ccCceEEEEeccccccCchhHhhHHHHHHH
Confidence            555 22222   2334  7899999999997776665544233322    122245567899999999999999999889


Q ss_pred             HHhhccCCeeeeecccccccchhhhhhhcc--cCHHHHHHHhhcccchhHHHHHHHHHHHhhhc-CCeeeEEeeccChH-
Q 025844          160 AMVQLELPHVNILSKMDLVTNKKEIEDYLN--PESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKES-  235 (247)
Q Consensus       160 ~~~~~~~p~i~vlsk~dll~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-  235 (247)
                      ...+++.|.+.|+||+|+++.+ ..+....  .....+...+.. ....+..+.+.+...++++ +.+.+.|+|+.+++ 
T Consensus       152 ~~~~~~~~~ivvinK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geG  229 (244)
T d1yrba1         152 IDLRLGATTIPALNKVDLLSEE-EKERHRKYFEDIDYLTARLKL-DPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG  229 (244)
T ss_dssp             HHHHHTSCEEEEECCGGGCCHH-HHHHHHHHHHCHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred             HHHHhCCCceeeeeccccccHH-HHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCC
Confidence            9999999999999999999865 3333222  133344343433 3346678888888887775 55999999999888 


Q ss_pred             --HHHHHhhh
Q 025844          236 --RLLSQIMK  243 (247)
Q Consensus       236 --~l~~~id~  243 (247)
                        +|+..|++
T Consensus       230 i~~L~~~l~e  239 (244)
T d1yrba1         230 FEDLETLAYE  239 (244)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence              78777765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.47  E-value=7e-15  Score=116.33  Aligned_cols=120  Identities=17%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC--CCCCC-------c----ccChhhhHhHHHHHHHcCCCCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDYP-------V----AMDIRELISLEDVMEELGLGPN   71 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~--~~~y~-------~----~~~v~e~i~~~~~l~~~~L~~~   71 (247)
                      ++|+||||||||||++.++|.++++.|.+.+.+.+....  ...+.       .    .........    ...++.  .
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~   76 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKL----VGSYGV--N   76 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSE----ETTEEE--C
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhh----hhhhhc--C
Confidence            689999999999999999999999999999887553221  01110       0    000000000    000000  0


Q ss_pred             CchhhhHHhhhh-hHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           72 GGLIYCMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        72 ~~~~~~~~~l~~-~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                         ....+.... ..+.++++++..  +|+++++|||+..+... ..+...+.+.+...+.+++++
T Consensus        77 ---~~~~~~~~~~~~~~~l~~~~~~--~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~il~~  136 (178)
T d1ye8a1          77 ---VQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVAT  136 (178)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSEEEEE
T ss_pred             ---cchhhhhhhhhHHHHHHHHHhc--CCCceeecCCCccchhh-HHHHHHHHHHhccCCCEEEEE
Confidence               000111111 122677888888  99999999998744433 333424444454456777655

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=6.9e-07  Score=72.59  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=66.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +++++++||+|+||||.+--|+-++.-.+.+|.+...|..+          +.-.-.++.+.+.+++.-.....  -+.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R----------~gA~eQL~~~a~~l~v~~~~~~~--~~d~   76 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR----------AAAVEQLQVWGQRNNIPVIAQHT--GADS   76 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC----------HHHHHHHHHHHHHTTCCEECCST--TCCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc----------ccchhhhhhhhhhcCCccccccc--CCCH
Confidence            57899999999999999888887777666688887766421          21222345566666664211000  0001


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCC-c-ccHHhHHHHHHHHHHHHH
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPG-Q-IELFTHVPVLRNFVDHLK  127 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt-~-LD~~~~~~~~~~ll~~l~  127 (247)
                      ..-+...+..+-..  +-+++|+|.|+ + .|.....++. ++.+..+
T Consensus        77 ~~~l~~~~~~a~~~--~~d~ilIDTaGr~~~d~~~~~el~-~l~~~~~  121 (211)
T d2qy9a2          77 ASVIFDAIQAAKAR--NIDVLIADTAGRLQNKSHLMEELK-KIVRVMK  121 (211)
T ss_dssp             HHHHHHHHHHHHHT--TCSEEEECCCCCGGGHHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHHc--CCCEEEeccCCCccccHHHHHHHH-HHHHHHh
Confidence            11111222223345  78999999999 3 7777666655 6655554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=6.9e-07  Score=72.70  Aligned_cols=110  Identities=16%  Similarity=0.168  Sum_probs=65.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +++++++||+|+||||.+--|+-++...+.+|.+...|..+          +.-.-.++.+.+.++..-......  ...
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R----------~gA~eQL~~~a~~l~i~~~~~~~~--~d~   78 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR----------AAAIEQLKIWGERVGATVISHSEG--ADP   78 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC----------HHHHHHHHHHHHHHTCEEECCSTT--CCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc----------cchhHHHHHHhhhcCccccccCCC--CcH
Confidence            58899999999999999888887776666678887766421          111222445555556532210000  001


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l  126 (247)
                      ..-...+.+.+...  +-+++|+|.|+-  -|.....++. .+.+..
T Consensus        79 ~~~~~~~~~~~~~~--~~d~ilIDTaGr~~~d~~~~~el~-~~~~~~  122 (213)
T d1vmaa2          79 AAVAFDAVAHALAR--NKDVVIIDTAGRLHTKKNLMEELR-KVHRVV  122 (213)
T ss_dssp             HHHHHHHHHHHHHT--TCSEEEEEECCCCSCHHHHHHHHH-HHHHHG
T ss_pred             HHHHHHHHHHHHHc--CCCEEEEeccccccchHHHHHHHH-HHHhhh
Confidence            11111333445556  789999999993  7766655554 554444

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.51  E-value=7.7e-07  Score=69.39  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .|+|+|++|+|||||++.++|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999974

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=6.7e-06  Score=64.69  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .++|+|++|||||||++.|+|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5899999999999999999974

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.40  E-value=1.9e-06  Score=69.87  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l   81 (247)
                      +.+++++||+|+||||.+--|+-+++..+.+|.+...|..+          +...-.++.+-+.+|+.-......  +.+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R----------~ga~eQL~~~a~~l~v~~~~~~~~--~~~   79 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR----------PAALEQLQQLGQQIGVPVYGEPGE--KDV   79 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS----------HHHHHHHHHHHHHHTCCEECCTTC--CCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc----------cchhHHHHHhccccCcceeecccc--hhh
Confidence            47899999999999999888887777666788888776421          222222444555666542111000  011


Q ss_pred             hhhHHHHHHHHhhcCCCCCEEEEeCCCc--cc
Q 025844           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IE  111 (247)
Q Consensus        82 ~~~~~~~la~al~~~~~p~~lilDEPt~--LD  111 (247)
                      ..-...++..+...  +.+++|+|.|+-  .|
T Consensus        80 ~~~~~~a~~~~~~~--~~d~IlIDTaGr~~~~  109 (211)
T d1j8yf2          80 VGIAKRGVEKFLSE--KMEIIIVDTAGRHGYG  109 (211)
T ss_dssp             HHHHHHHHHHHHHT--TCSEEEEECCCSCCTT
T ss_pred             hHHHHHHHHHhhcc--CCceEEEecCCcCccc
Confidence            11122344444556  889999999993  55

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.38  E-value=1.5e-06  Score=70.41  Aligned_cols=109  Identities=17%  Similarity=0.085  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .+++++||+||||||.+--|+.++...+.+|.+...|..+  .+      -.|  .++.+-+.+++.-......  ....
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R--~g------A~e--QL~~~a~~l~i~~~~~~~~--~d~~   74 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR--AA------GGT--QLSEWGKRLSIPVIQGPEG--TDPA   74 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS--TT------HHH--HHHHHHHHHTCCEECCCTT--CCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc--cc------chh--hHhhcccccCceEEeccCC--ccHH
Confidence            5789999999999999888888877666788888776522  11      112  2344555556542110000  0011


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l  126 (247)
                      .-....+..+-..  +-+++|+|.|+-  -|.....++. ++.+..
T Consensus        75 ~~~~~~~~~~~~~--~~d~ilIDTaGr~~~d~~l~~el~-~~~~~~  117 (207)
T d1okkd2          75 ALAYDAVQAMKAR--GYDLLFVDTAGRLHTKHNLMEELK-KVKRAI  117 (207)
T ss_dssp             HHHHHHHHHHHHH--TCSEEEECCCCCCTTCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHC--CCCEEEcCccccchhhHHHHHHHH-HHHHHh
Confidence            1111222333345  789999999994  7766555544 444443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=4.2e-07  Score=71.00  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++|+|++|+|||||++.|+|-
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.30  E-value=2.5e-06  Score=68.97  Aligned_cols=109  Identities=18%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .+++++||+|+||||.+--|+.++...+.+|.+...|..+          +.-.-.++.+-+.+++.-.....  .+...
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R----------~gA~eQL~~~a~~l~v~~~~~~~--~~~~~   78 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR----------PAAREQLRLLGEKVGVPVLEVMD--GESPE   78 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC----------HHHHHHHHHHHHHHTCCEEECCT--TCCHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc----------chHHHHHHHHHHhcCCccccccc--cchhh
Confidence            5678999999999999988888777666677777665421          11111234455555553211000  00011


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL  126 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l  126 (247)
                      .........+-..  +-+++|+|.|+-  .|.....++. ++.+..
T Consensus        79 ~~~~~~~~~~~~~--~~d~vlIDTaGr~~~d~~~~~el~-~~~~~~  121 (207)
T d1ls1a2          79 SIRRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL  121 (207)
T ss_dssp             HHHHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHhhc--cCcceeecccccchhhhhhHHHHH-HHHhhc
Confidence            1111122222334  789999999993  7877666654 555444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.8e-07  Score=71.71  Aligned_cols=41  Identities=15%  Similarity=0.006  Sum_probs=34.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      |.=+++|+|++|||||||++.|...+...+.++.+...+..
T Consensus         1 m~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           1 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            54578999999999999999999988877777877766654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.26  E-value=2.5e-06  Score=66.71  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -++|+|+.+||||||++.|+|.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.25  E-value=2.8e-06  Score=69.51  Aligned_cols=39  Identities=13%  Similarity=0.230  Sum_probs=30.8

Q ss_pred             CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        98 ~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +..++|+||++. -++.....+...+++.|.+.+..++++
T Consensus       114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~t  153 (224)
T d1ewqa2         114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFA  153 (224)
T ss_dssp             TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEe
Confidence            678999999998 888888888878899987655554333

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.18  E-value=3.3e-06  Score=68.73  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +++|+|..+||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            4899999999999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=3.8e-07  Score=71.49  Aligned_cols=21  Identities=29%  Similarity=0.233  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |+|+|++|+|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999763

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=3.8e-06  Score=70.52  Aligned_cols=37  Identities=5%  Similarity=0.141  Sum_probs=29.4

Q ss_pred             CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        98 ~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .+.++++|||-+ |+|...+.+. ++++...+ +.-++++
T Consensus       241 ~~~~~~iDEpe~~Lhp~~~~~l~-~~l~~~~~-~~Qviit  278 (308)
T d1e69a_         241 PSPFYVLDEVDSPLDDYNAERFK-RLLKENSK-HTQFIVI  278 (308)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHH-HHHHHHTT-TSEEEEE
T ss_pred             cCchhhhhhccccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence            778999999998 9999998888 88887754 4455444

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.1e-07  Score=70.72  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      .+.|.||+|+|||||++.+++.+...++.+.+.+.++
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~   39 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE   39 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4789999999999999999999988877777766554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=9.4e-06  Score=66.66  Aligned_cols=50  Identities=12%  Similarity=0.120  Sum_probs=32.7

Q ss_pred             HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844           87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (247)
Q Consensus        87 ~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (247)
                      ..+.+.+-...+..++|+||++. -++.....+...+++.+... +..++++
T Consensus       109 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~t  160 (234)
T d1wb9a2         109 TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA  160 (234)
T ss_dssp             HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEe
Confidence            33444443332667999999998 88877777776788888654 3444433

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=8.8e-06  Score=64.20  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .++|+|++|||||||++.|.|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999873

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=5.8e-06  Score=66.41  Aligned_cols=70  Identities=17%  Similarity=0.303  Sum_probs=41.7

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeee-eecccc
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMD  176 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~-vlsk~d  176 (247)
                      +..|-|+|.||.-|.      ..+.++.+...+..+++|.   +..=-.+..     .-.......++.|++- ++||+|
T Consensus        66 ~~~i~iiDtPGh~df------~~~~~~~~~~aD~avlVvd---a~~Gv~~qt-----~~~~~~~~~~gi~~iiv~iNK~D  131 (204)
T d2c78a3          66 KRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVS---AADGPMPQT-----REHILLARQVGVPYIVVFMNKVD  131 (204)
T ss_dssp             SCEEEEEECCCSGGG------HHHHHHHHTTCSSEEEEEE---TTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECGG
T ss_pred             CeEEEEEeCCCchhh------HHHHHHHHHHCCEEEEEEE---CCCCCcHHH-----HHHHHHHHHcCCCeEEEEEEecc
Confidence            678999999996553      3366677766666666553   322111211     1122333456788654 589999


Q ss_pred             cccch
Q 025844          177 LVTNK  181 (247)
Q Consensus       177 ll~~~  181 (247)
                      ++..+
T Consensus       132 ~~~~~  136 (204)
T d2c78a3         132 MVDDP  136 (204)
T ss_dssp             GCCCH
T ss_pred             cCCCH
Confidence            97644

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.09  E-value=7.7e-07  Score=68.67  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      +++|+|++|||||||++.|...++..+.+|.+.-.+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            7899999999999999999998888776777765443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.07  E-value=2e-06  Score=68.21  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++++|.-.+|||||++.|.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            47999999999999999999854

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=2.1e-05  Score=60.47  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +|+|+|.+|+|||||++.|+|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999973

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.06  E-value=1.1e-06  Score=66.12  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |+-++.|.||+||||||+++.|..
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            788899999999999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.04  E-value=9.5e-07  Score=67.28  Aligned_cols=34  Identities=35%  Similarity=0.537  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      |+.+++|.||+||||||+++.|+..+.   +.+.+.+
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            778899999999999999999997653   3455444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.97  E-value=1.3e-05  Score=65.22  Aligned_cols=103  Identities=17%  Similarity=0.344  Sum_probs=57.4

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCe-eeeecccc
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMD  176 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~-i~vlsk~d  176 (247)
                      +..+-|+|+|+.-|.      ..+.++.+...+..+++|   |+..=..+...     -.+.....++.|+ +.++||+|
T Consensus        88 ~~~~~iiD~PGH~df------v~~~~~g~~~aD~ailVv---da~~G~~~Qt~-----e~~~~~~~~gv~~iiv~vNK~D  153 (222)
T d1zunb3          88 KRKFIIADTPGHEQY------TRNMATGASTCDLAIILV---DARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMD  153 (222)
T ss_dssp             SEEEEEEECCCSGGG------HHHHHHHHTTCSEEEEEE---ETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTT
T ss_pred             ceEEEEEeccchhhh------hhhhccccccCceEEEEe---ccccCcccchH-----HHHHHHHHcCCCEEEEEEEccc
Confidence            457999999997554      225555665555555544   44332233322     2233344567775 45679999


Q ss_pred             cccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC----eeeEEeeccChHH
Q 025844          177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESR  236 (247)
Q Consensus       177 ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~  236 (247)
                      +.+...                      ..|......+..+++..++    +.|+|+|..+++|
T Consensus       154 ~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~n  195 (222)
T d1zunb3         154 LNGFDE----------------------RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDN  195 (222)
T ss_dssp             TTTSCH----------------------HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTT
T ss_pred             cccccc----------------------eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCcc
Confidence            975431                      0122222333344444433    7899999877663

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.93  E-value=2e-06  Score=67.05  Aligned_cols=33  Identities=18%  Similarity=0.137  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~   34 (247)
                      ++++||-||+|||||||++.|+..+....-.+.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~   54 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVC   54 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhccccccce
Confidence            578999999999999999999987765443333

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.5e-06  Score=67.65  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |+|++||+|+.||||||.++.+..+
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHC
Confidence            8999999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=3.3e-06  Score=64.74  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.++|+||+|||||||++.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999999875

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.84  E-value=2e-05  Score=62.84  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++|+|.-.+|||||+..|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            589999999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.84  E-value=3.1e-06  Score=65.11  Aligned_cols=31  Identities=16%  Similarity=0.168  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~   34 (247)
                      +++|.|++||||||+++.|+..+...+.++.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            6889999999999999999988766554443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.83  E-value=2e-05  Score=63.90  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~   23 (247)
                      -++++|.-++|||||+..|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            48999999999999999885

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.83  E-value=3.8e-06  Score=64.01  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+||+||||||+++.|+.-+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999998654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.82  E-value=8.1e-06  Score=65.21  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++++|.-++|||||++.|.+.+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            48999999999999999998654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=5.4e-06  Score=63.27  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..+++|+||+||||||+.+.|+..+
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4688999999999999999999865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.8e-06  Score=66.56  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ++++||.|+.||||||+.+.|+..+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            68999999999999999999987764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=2.7e-05  Score=68.71  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .-++|+|.+|+|||||++.|.|.-.
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCc
Confidence            5589999999999999999999643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=5.1e-06  Score=62.23  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+.|+||+||||||+.+.|+..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999999765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.77  E-value=6.3e-06  Score=64.80  Aligned_cols=25  Identities=36%  Similarity=0.646  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+++|+||+||||||+++.|+..+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.76  E-value=7.6e-06  Score=65.40  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |.|++||.|+.||||||.++.+..+
T Consensus         1 M~~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHC
Confidence            8899999999999999999988643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.75  E-value=6.6e-06  Score=62.71  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35788999999999999999999874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=7.5e-06  Score=64.25  Aligned_cols=25  Identities=28%  Similarity=0.585  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+++|+||+||||||.++.|+..+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.73  E-value=7.8e-06  Score=62.35  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +++.|+|++||||||+.+.|+..+.
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            7899999999999999999997664

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.73  E-value=8.9e-06  Score=62.13  Aligned_cols=24  Identities=38%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -+++|.||+||||||+++.|+..+
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999765

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=5.9e-05  Score=61.89  Aligned_cols=21  Identities=43%  Similarity=0.480  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~   23 (247)
                      .-++++|.-++|||||+..|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            357999999999999999886

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.71  E-value=7.2e-06  Score=64.31  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++.++|+||+||||||+++.|+..+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999998765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.69  E-value=9.8e-06  Score=61.86  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..++|.||+||||||+++.|+..+
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHh
Confidence            458899999999999999999765

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=8.8e-06  Score=64.11  Aligned_cols=24  Identities=33%  Similarity=0.636  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -+++|+||+||||||.++.|+..+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999866

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=8.2e-06  Score=64.30  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      +.+++++|.+||||||+.+.|+..+....-++.+.+.|
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D   39 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   39 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence            56899999999999999999998766544445554433

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.4e-05  Score=68.26  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeccC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLD   39 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~v~i~g~d   39 (247)
                      +|++||.|++||||||+++.|..++...  +-+|.+...|
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            5899999999999999999999987632  3345555443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=9.9e-06  Score=69.77  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      +.++|.||+|||||||+..+...+...+.+|.+.-.||..
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss   94 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   94 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence            6799999999999999999999888777788888778754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.63  E-value=1.5e-05  Score=62.47  Aligned_cols=24  Identities=33%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++++||.|+.||||||+++.|..+
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            689999999999999999999754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=9.1e-06  Score=63.45  Aligned_cols=26  Identities=27%  Similarity=0.370  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .+++|+||+||||||+++.|....+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            46779999999999999999876653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=1.7e-05  Score=61.31  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+||+||||||.++.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.55  E-value=2e-05  Score=62.85  Aligned_cols=26  Identities=35%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            1 MG-YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         1 ~~-~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      |+ ++++|-||+||||||.++.|+..+
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            53 567888999999999999999765

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.55  E-value=2.1e-05  Score=64.88  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 025844            5 QLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~   23 (247)
                      ++|+|.-++|||||+..|.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHH
Confidence            8999999999999999884

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.55  E-value=1.9e-05  Score=62.09  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++.|+||+||||||.++.|+..+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.55  E-value=0.00029  Score=61.81  Aligned_cols=99  Identities=23%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~   83 (247)
                      .+.|.||.||||||++..+...+.....+|.-.. ||-...++......+               .+.         -..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dPiE~~~~~~~q~~v---------------~~~---------~~~  214 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIEFDIDGIGQTQV---------------NPR---------VDM  214 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCCSCCSSSEEEEC---------------BGG---------GTB
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cCcccccCCCCeeee---------------cCC---------cCC
Confidence            5789999999999999999987765556665553 332211111000000               000         112


Q ss_pred             hHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        84 ~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      .+..++..++-+  +||++++.|....  .+..    ..+ +.+..|..|+..
T Consensus       215 ~~~~~l~~~lR~--dPDvi~igEiRd~--~ta~----~a~-~aa~tGhlV~tT  258 (401)
T d1p9ra_         215 TFARGLRAILRQ--DPDVVMVGEIRDL--ETAQ----IAV-QASLTGHLVMST  258 (401)
T ss_dssp             CHHHHHHHHGGG--CCSEEEESCCCSH--HHHH----HHH-HHHHTTCEEEEE
T ss_pred             CHHHHHHHHHhh--cCCEEEecCcCCh--HHHH----HHH-HHHhcCCeEEEE
Confidence            243566666667  9999999998842  2222    222 344567766443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.54  E-value=2e-05  Score=61.24  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .++|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999765

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.54  E-value=2e-05  Score=60.76  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      |.-.+.++|++||||||+.+.++..+
T Consensus         1 M~~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           1 MTEPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            54456789999999999999998654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.50  E-value=2.6e-05  Score=59.95  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v   33 (247)
                      -+++|.|++||||||+++.|+..+...+-.+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~   32 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN   32 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            3567899999999999999998876543333

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.6e-05  Score=61.82  Aligned_cols=26  Identities=23%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      +++.++|++||||||+.+.|+..+..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            67889999999999999999976643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-05  Score=60.64  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |+-.++|+||+||||||+++.|...
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHh
Confidence            6667899999999999999998854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.47  E-value=2.5e-05  Score=61.01  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+||+||||||.++.|+..+
T Consensus         6 iil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5589999999999999999643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=2.9e-05  Score=60.09  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=3e-05  Score=60.08  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999765

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=8.3e-06  Score=62.99  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+|+|||||||||++.+|.-.+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            34678999999999999998554

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.44  E-value=3.2e-05  Score=59.23  Aligned_cols=22  Identities=41%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999999775

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.8e-05  Score=60.79  Aligned_cols=25  Identities=28%  Similarity=0.543  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .=+++|.||+||||||..+.|+.-+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3478999999999999999999754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.42  E-value=3.7e-05  Score=60.57  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-++|+||+||||||+++.|+..+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.41  E-value=5.3e-05  Score=64.92  Aligned_cols=33  Identities=33%  Similarity=0.495  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      .+.|.||.|||||||+++|.+.+++...-+.+.
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivtiE  200 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE  200 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence            378999999999999999999999877666664

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.41  E-value=0.0005  Score=57.15  Aligned_cols=89  Identities=16%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -++-|.||+||||||||..++...+..+|.+.+....-     .+.+           ++++.+|+.+..-........ 
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~-----~~~~-----------~~a~~~Gvd~d~i~~~~~~~~-  120 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH-----ALDP-----------VYARALGVNTDELLVSQPDNG-  120 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-----CCCH-----------HHHHHTTCCGGGCEEECCSSH-
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc-----cCCH-----------HHHHHhCCCchhEEEEcCCCH-
Confidence            36789999999999999998887666667666554321     1211           367777877653222111111 


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~  109 (247)
                      +.. ..++..+....+++++|+|--++
T Consensus       121 E~~-~~~~~~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         121 EQA-LEIMELLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             HHH-HHHHHHHHTTTCCSEEEEECTTT
T ss_pred             HHH-HHHHHHHHhcCCCcEEEEecccc
Confidence            122 33455555433689999998876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.39  E-value=3e-05  Score=60.76  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +++++|-|+.||||||+++.|+..+.
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.39  E-value=3.5e-05  Score=62.91  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.++.+.||+||||||+.+.+++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35688999999999999999999764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=3.9e-05  Score=59.62  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +.++.++|++||||||+++.+..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=3.9e-05  Score=59.59  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+||+||||||+++.|+..+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999999754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=4.4e-05  Score=58.49  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +++|+|+.|||||||++.|+|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=4.5e-05  Score=58.33  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++++|++||||||+.+.++..+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4577999999999999999765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=4.6e-05  Score=59.69  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCc
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ++|+||+||||||+.+.|....+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            57999999999999999976543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=5.2e-05  Score=59.65  Aligned_cols=22  Identities=36%  Similarity=0.700  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+||+||||||+++.|....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5699999999999999998654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.29  E-value=5.2e-05  Score=64.99  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      +.++|.||+|||||||+..+...+...+-+|.+.-.||..
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss   91 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   91 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence            6799999999999999999998766566678887777754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.28  E-value=5.8e-05  Score=63.01  Aligned_cols=20  Identities=40%  Similarity=0.635  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~   23 (247)
                      -++|+|+.|||||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47999999999999999994

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.27  E-value=6.4e-05  Score=56.06  Aligned_cols=20  Identities=30%  Similarity=0.366  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025844            5 QLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ++|+|++|||||||++.+.+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999975

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00083  Score=54.75  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .++.|.|++|+|||||+-.++-
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            3567999999999999877654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.27  E-value=0.00077  Score=53.84  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      .++.|.||+|||||||+.-++-...-..+.+.+.
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~i   60 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACANKERAILF   60 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcccccee
Confidence            4688999999999999988876544444455554

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.26  E-value=5.8e-05  Score=58.11  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -++|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999873

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=7.4e-05  Score=60.78  Aligned_cols=30  Identities=17%  Similarity=0.210  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v   33 (247)
                      ..+++|++|+|||||++.|.|-.....|.|
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence            568999999999999999988655545554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00036  Score=57.59  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -.+.+.||+|+|||++++.++..+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcC
Confidence            3578999999999999999998653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=7.4e-05  Score=64.61  Aligned_cols=57  Identities=11%  Similarity=0.229  Sum_probs=37.7

Q ss_pred             HhhhhhHH----HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           79 EHLEDNLD----DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        79 ~~l~~~~~----~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      ..+++|.+    +++..++....++++++||||++ ||+..+..+. ++++++...+.-+|++
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~-~~l~~~~~~~~Q~I~i  392 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI  392 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhCCCCEEEEE
Confidence            34455543    23333444443678999999999 9999998888 8887775444445554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.21  E-value=5.5e-05  Score=57.73  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -++++|++|||||||++.+.+-
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=8.6e-05  Score=55.18  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++++|++|+|||||++.+.+-
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999999973

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.18  E-value=0.00012  Score=57.90  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCcCCCceEEEec
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVN   37 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v~i~g   37 (247)
                      .++.|.|++|+|||||+.-++ .........+.+..
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s   62 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT   62 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence            467899999999999986543 33333334566554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00011  Score=55.31  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|+.|+|||||++.|+|-
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999974

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.17  E-value=9.3e-05  Score=55.45  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++++|++|+|||||++.+.+-
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            34789999999999999999874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0001  Score=58.91  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +++|+||+|||||||++.|....+
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            577999999999999999987644

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00011  Score=56.80  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|+.|+|||||++.|+|-
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            45899999999999999999873

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.09  E-value=0.0031  Score=50.17  Aligned_cols=42  Identities=12%  Similarity=0.013  Sum_probs=31.5

Q ss_pred             CCCEEEEeCCCc-c-cHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025844           98 DDDYLVFDCPGQ-I-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLD  140 (247)
Q Consensus        98 ~p~~lilDEPt~-L-D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d  140 (247)
                      ..+++++|+-.. . .......++ .++..+.+.|..++++.-..
T Consensus        97 ~~dll~iDDi~~i~~~~~~~~~lf-~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2          97 SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEEESSC
T ss_pred             hccchhhhhhhhhcCchHHHHHHH-HHHHHHhhccceEEEecCCc
Confidence            789999999987 3 455556666 88998888888887765433

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00014  Score=61.19  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++++||-|+.|||||||++.|...+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999886554

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0011  Score=54.73  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=50.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      .++-|.||+||||||+|-.++...+..+|.+.+....-     .+.           .+.++.+|+.+..-.....+. .
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~-----~~~-----------~~~a~~~Gvd~d~v~~~~~~~-~  117 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-----ALD-----------PIYARKLGVDIDNLLCSQPDT-G  117 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-----CCC-----------HHHHHHTTCCGGGCEEECCSS-H
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc-----ccC-----------HHHHHHhCCCHHHEEEecCCC-H
Confidence            47889999999999999888776655566655443221     111           124566666543211111111 1


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCcc
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQI  110 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~L  110 (247)
                      +.. ..+...+....+++++++|--+++
T Consensus       118 E~~-~~~i~~l~~~~~~~liViDSi~al  144 (263)
T d1u94a1         118 EQA-LEICDALARSGAVDVIVVDSVAAL  144 (263)
T ss_dssp             HHH-HHHHHHHHHHTCCSEEEEECGGGC
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEECcccc
Confidence            111 223334433226789999988764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.07  E-value=3.7e-05  Score=64.87  Aligned_cols=37  Identities=19%  Similarity=0.114  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d   39 (247)
                      -++||.|++||||||+++.+...++..+-++.+...|
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            3799999999999999999998876554454444333

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.06  E-value=0.00013  Score=55.32  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +=++++|++|||||||++.+.+
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            3478999999999999999876

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.99  E-value=0.00021  Score=54.40  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +-++|+|.+|||||||++.+.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56889999999999999999873

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.98  E-value=6.2e-05  Score=61.46  Aligned_cols=30  Identities=17%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceE
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v   33 (247)
                      ..+++|++|+|||||++.|.|-.....|.|
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v  128 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEI  128 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC---------
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence            467999999999999999997654444444

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0002  Score=57.89  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      .+.+.||+|+||||++++++..+.   +++...
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~---~~~~~~   83 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG---YDILEQ   83 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT---CEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH---hhhhcc
Confidence            578999999999999999998653   444444

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.0014  Score=54.43  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=52.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~   82 (247)
                      -++-+.||+||||||+|-.++...+..+|.+.|.+..-     .+.           .+.++++|+.+..-.....+. .
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~-----~~~-----------~e~a~~~GvD~d~il~~~~~~-~  123 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH-----ALD-----------PDYAKKLGVDTDSLLVSQPDT-G  123 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC-----CCC-----------HHHHHHHTCCGGGCEEECCSS-H
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc-----cCC-----------HHHHHHhCCCHHHeEEecCCC-H
Confidence            46789999999999998777766666667665543211     111           134566676654222211111 1


Q ss_pred             hhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (247)
Q Consensus        83 ~~~~~~la~al~~~~~p~~lilDEPt~  109 (247)
                      +.. ..++..+....+++++|+|--++
T Consensus       124 E~~-~~~~~~l~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         124 EQA-LEIADMLIRSGALDIVVIDSVAA  149 (269)
T ss_dssp             HHH-HHHHHHHHHTTCEEEEEEECSTT
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEecccc
Confidence            222 34455555433678999999876

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.94  E-value=0.002  Score=52.58  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeccC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD   39 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~g~d   39 (247)
                      -.+.|.|++|+|||||+.-++-. ..-.+..|.+...+
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            35789999999999998888743 23334466665544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.0002  Score=56.30  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -|+|+|++|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999863

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.00017  Score=56.61  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      +++|-|+-||||||+++.|...++..+-+|.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            578999999999999999998876544455443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00015  Score=58.27  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETV   29 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~   29 (247)
                      +.+.||+|+||||+.++++..+...
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCC
Confidence            6789999999999999999876543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0001  Score=56.35  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .-++|+|++++|||||++.|.|.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999874

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.90  E-value=0.00022  Score=57.05  Aligned_cols=23  Identities=39%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCc
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.+.||+|+||||++++++..+.
T Consensus        48 lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            57999999999999999997653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.88  E-value=0.00028  Score=56.32  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+++.+.|.+||||||+.+.|...+
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3789999999999999999998654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.88  E-value=0.00028  Score=56.89  Aligned_cols=28  Identities=18%  Similarity=0.354  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G   31 (247)
                      .+.|.||+|+||||+++.++..++...+
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            5789999999999999999988765443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00026  Score=56.89  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+.+.||+|+||||+.+++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            367899999999999999998643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.83  E-value=0.00028  Score=53.40  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      =++++|++|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            367999999999999999875

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.82  E-value=0.0025  Score=50.30  Aligned_cols=42  Identities=26%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             CCeEEEEE-cCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         1 ~~~~~~ii-GpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      |.-+++|. +.-|+||||+.-.++..+.-.+.+|.+.+.|+..
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~   43 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM   43 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            66678888 7789999999999998887666689888888643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0004  Score=52.60  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.9

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            1 MG-YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         1 ~~-~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |+ |-++|+|+.|+|||||++.+.+-
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhC
Confidence            54 78999999999999999998763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.80  E-value=0.00029  Score=58.04  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .-++|+|.+|+|||||++.|.|-
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            46889999999999999999984

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=7.8e-05  Score=56.08  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      ++++|++|+|||||++.|+|-
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999973

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00032  Score=55.96  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            5789999999999999999754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.76  E-value=0.00028  Score=53.83  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|++|+|||||++.+.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999999865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00042  Score=52.52  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |-++++|++|+|||||++.+.+-
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            66899999999999999998863

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00023  Score=56.89  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .++|-|+-||||||+++.|+..+.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00037  Score=53.08  Aligned_cols=21  Identities=19%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      =++++|+.|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            478999999999999999876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.70  E-value=0.00047  Score=55.40  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .++||.|+.||||||.++.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999965

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.0005  Score=52.27  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |=++++|+.|+|||||++.+.+-
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            45889999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.68  E-value=0.00044  Score=56.59  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ..+.+.||+|+|||++++++++..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            357899999999999999999754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.00042  Score=58.55  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.+.+.||+|+|||+|.|++++.+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            457899999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00052  Score=52.24  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +|=++|+|.+|+|||||++.+.+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            36789999999999999998875

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0004  Score=55.31  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      .+++|-|+-||||||+++.|...+...+-.+.+.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            3577889999999999999999887655455443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00052  Score=51.89  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      =++++|++|+|||||++.+++-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999998763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00061  Score=52.07  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|++|+|||||++.+.+
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578999999999999998876

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00061  Score=51.42  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .=++++|++|+|||||++.+.+
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4478999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00071  Score=51.37  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |=++++|+.|+|||||++.+.+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCcCHHHHHHHHhCC
Confidence            56899999999999999998864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0023  Score=54.80  Aligned_cols=66  Identities=14%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             EEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccc
Q 025844          101 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  180 (247)
Q Consensus       101 ~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~  180 (247)
                      +=|+|.||..|....      ....++-.+..+++|.-.+.....        ...........+.|.+-++||+|.+..
T Consensus        98 inliDtPGh~dF~~e------v~~al~~~D~allVVda~eGv~~q--------T~~~~~~a~~~~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          98 INLIDSPGHVDFSSE------VTAALRVTDGALVVVDTIEGVCVQ--------TETVLRQALGERIKPVVVINKVDRALL  163 (341)
T ss_dssp             EEEECCCCCCSSCHH------HHHHHHTCSEEEEEEETTTBSCHH--------HHHHHHHHHHTTCEEEEEEECHHHHHH
T ss_pred             EEEEcCCCcHHHHHH------HHHHHhhcCceEEEEecccCcchh--------HHHHHHHHHHcCCCeEEEEECcccccc
Confidence            457999998887643      333454445566555433222111        112233456788999999999998653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00075  Score=51.15  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++++|..|+|||||++.+.+
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5578999999999999998875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0017  Score=55.68  Aligned_cols=20  Identities=40%  Similarity=0.655  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~   23 (247)
                      +.+|+|||||||||++.+|+
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999985

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00062  Score=52.44  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +=++|+|+.|+|||||++.+.+
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3478999999999999999885

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.51  E-value=0.00066  Score=54.58  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++.|.||.|+|||||++.++.-.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHC
Confidence            57899999999999999887544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00071  Score=51.97  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++.|.||+|||||||+..++...
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999998887543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0012  Score=50.38  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      |-++++|..|+|||||++.+.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCc
Confidence            568999999999999999998653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00077  Score=51.21  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|+.|+|||||++.+.+
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5578999999999999999885

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00073  Score=50.84  Aligned_cols=22  Identities=14%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|..|+|||||++.+.+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHh
Confidence            4578999999999999999885

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00068  Score=51.26  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      =++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00066  Score=54.01  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCc
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.+.||+|+||||++++++..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            46899999999999999986543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00054  Score=55.08  Aligned_cols=22  Identities=41%  Similarity=0.764  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            5799999999999999998753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00083  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|++|+|||||++.+.+
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4578999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.00072  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +=++|+|..|+|||||++.+.+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4478999999999999998875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.00075  Score=55.21  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.+.+.||+|+||||+++.+++.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            357899999999999999999754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00087  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|++|+|||||++.+.+
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4588999999999999988764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.45  E-value=0.0011  Score=52.51  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      ||.+...=|.-|+||||+.-.++..+.-.+-+|.+.+.|+..
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            555555558999999999999998887666689888888754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00064  Score=53.58  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVR   30 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~   30 (247)
                      .++|-|+.||||||+++.|+..+...+
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~g   30 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQLG   30 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            366889999999999999998876543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.41  E-value=0.00044  Score=53.13  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~   23 (247)
                      +=++++|++|+|||||++.+.
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            457899999999999999874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00051  Score=52.38  Aligned_cols=23  Identities=22%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +|=++++|+.|+|||||++.+.+
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            57789999999999999887653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00081  Score=53.37  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +.+.||+|+||||++++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            5689999999999999999754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.00099  Score=51.83  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|+.|+|||||++.+.+
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            5588999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0011  Score=49.88  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++++|+.|+|||||++.+.+
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578999999999999998875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.37  E-value=0.0006  Score=55.14  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ++.+.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            345679999999999999997753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.001  Score=50.74  Aligned_cols=23  Identities=13%  Similarity=0.208  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ++=++|+|++|+|||||++.+.+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            45578999999999999998875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.35  E-value=0.00041  Score=58.87  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      -+.+.||+|+||||++|.+++++++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            4789999999999999999999876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0011  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|.+|+|||||++.+.+
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999998875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0012  Score=49.81  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=21.2

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHh
Q 025844            1 MG-YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         1 ~~-~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |+ |=++++|..|+|||||++.+.+
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Confidence            54 7789999999999999999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.00097  Score=50.40  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +=++|+|.+|+|||||++.+.+
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5588999999999999999875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0012  Score=49.93  Aligned_cols=22  Identities=14%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|.+|+|||||++.+.+
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5578999999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0011  Score=54.42  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -.+.+.||+|+|||++++++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            468899999999999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.30  E-value=0.0006  Score=51.95  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +-++++|++|+|||||++.+.+
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4478999999999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.001  Score=50.77  Aligned_cols=21  Identities=33%  Similarity=0.494  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      =++++|..|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999886

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0011  Score=50.24  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025844            5 QLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ++++|+.|+|||||++.+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999886

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0012  Score=50.00  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++++|+.|+|||||++.+.+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5678999999999999999885

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0011  Score=50.07  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      =++++|+.|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999987753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0012  Score=50.36  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +=++|+|..|+|||||++.+.+
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578999999999999998875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0012  Score=54.41  Aligned_cols=25  Identities=28%  Similarity=0.636  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..+.+.||+|+|||++.+++++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHhC
Confidence            4688999999999999999998763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0014  Score=49.69  Aligned_cols=22  Identities=32%  Similarity=0.685  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |-++++|..|+|||||++.+.+
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6688999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0015  Score=49.63  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++++|..|+|||||++.+.+
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999998874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.17  E-value=0.011  Score=48.58  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .+++|.|+.|.|||||.+.+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999988653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0016  Score=49.22  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|+.|+|||||++.+.+
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0016  Score=53.89  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      |.+-+||||-+-+|||||++++++-
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCC
Confidence            7788999999999999999999974

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0015  Score=50.17  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      =++|+|..|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0016  Score=51.97  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      +-.++|=|+-||||||+++.|+..+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            456789999999999999999987754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.05  E-value=0.0019  Score=51.43  Aligned_cols=29  Identities=28%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCcCCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRR   31 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~~~G   31 (247)
                      |=+.++|++|||||||++.+. +...|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            567899999999999999874 44445544

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.02  E-value=0.002  Score=48.79  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++|+|..|+|||||++.+.+
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5678999999999999999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.00  E-value=0.0012  Score=57.01  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i   35 (247)
                      -++++.||+|+||||+++++++.+.   |.+.-
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~  184 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELCG---GKALN  184 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC---CEEEC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC---CCEEE
Confidence            4789999999999999999999864   55543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0021  Score=49.24  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025844            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         2 ~~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ++=++++|..|+|||||++.+..
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            45578999999999999987764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0012  Score=50.16  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=9.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      |=++++|..|+|||||++.+.+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578999999999999987764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0018  Score=49.85  Aligned_cols=20  Identities=35%  Similarity=0.576  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~   23 (247)
                      =++++|.+|+|||||++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999883

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0019  Score=50.97  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025844            4 AQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ++.|.||+|||||||+..++-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            678999999999999987763

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0021  Score=49.35  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +=++++|+.|+|||||++.+.+-
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            55789999999999999988753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0022  Score=49.38  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +=++|+|..|+|||||++.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            4488999999999999998774

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0022  Score=50.97  Aligned_cols=25  Identities=32%  Similarity=0.586  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .++|=|+-||||||+++.|+..++.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHh
Confidence            5779999999999999999988865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0022  Score=49.60  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .=++++|+.|+|||||++.+.+
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3478999999999999988775

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.85  E-value=0.0027  Score=48.40  Aligned_cols=28  Identities=29%  Similarity=0.287  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G   31 (247)
                      =++++|..|+|||||++.+..-..|+.|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            4789999999999999988755455554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.83  E-value=0.0018  Score=57.43  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      --+.++||+|||||-|+|.|++.+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578999999999999999999773

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.78  E-value=0.0028  Score=49.21  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ..+.+.|++|+||||++-.+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4688999999999999877664

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.75  E-value=0.0027  Score=49.27  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .++.|.||+|+||||+.-.+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999977763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.72  E-value=0.003  Score=48.10  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .++++-|+=|||||||+|.++.-+..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhccc
Confidence            47889999999999999999976543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0025  Score=52.98  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+|+|+||-++|||||++.+.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            589999999999999999999854

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.67  E-value=0.0026  Score=53.00  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      +-+||+|.+.||||||++++++--
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            458999999999999999999853

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.62  E-value=0.0032  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~   23 (247)
                      -++.|.||+|||||||+--++
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            468899999999999987665

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.58  E-value=0.003  Score=52.92  Aligned_cols=21  Identities=33%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      +||+|.+-+|||||+++|+|-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999986

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0039  Score=49.36  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .++.|.||+|||||||+..++.
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999988874

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0039  Score=47.61  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      +=++++|..|+|||||++.+..
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            3478999999999999998864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.016  Score=45.27  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCC---ceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHH
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME   79 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~---G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~   79 (247)
                      .-+.+-||+|+||||+.+.++..+....   -++...+  |....      +.|.+   ++++.+.+...|..       
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~--~~~~~------I~Id~---IR~i~~~~~~~~~~-------   77 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID--PEGEN------IGIDD---IRTIKDFLNYSPEL-------   77 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC--CSSSC------BCHHH---HHHHHHHHTSCCSS-------
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEe--CCcCC------CCHHH---HHHHHHHHhhCccc-------
Confidence            3567899999999999999998653211   1233221  11111      11221   33444444444321       


Q ss_pred             hhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHH
Q 025844           80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD  124 (247)
Q Consensus        80 ~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~  124 (247)
                                     .  +.+++|+||.-.|...++..+. +.++
T Consensus        78 ---------------~--~~KviIId~ad~l~~~aqNaLL-K~LE  104 (198)
T d2gnoa2          78 ---------------Y--TRKYVIVHDCERMTQQAANAFL-KALE  104 (198)
T ss_dssp             ---------------S--SSEEEEETTGGGBCHHHHHHTH-HHHH
T ss_pred             ---------------C--CCEEEEEeCccccchhhhhHHH-HHHh
Confidence                           1  5689999999888887775554 4433

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.40  E-value=0.0045  Score=47.63  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g   24 (247)
                      .++.|.|++|+||||++-.+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999866653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0038  Score=49.22  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      ..+.+.||+|+||||+.+.++..+-
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcc
Confidence            4678999999999999999998654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.32  E-value=0.0047  Score=48.45  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      -++.|.|++|+|||||+.-++-.
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            46889999999999999888743

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0075  Score=48.06  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      ++.|.|.=|||||||++.+...  ..+.++.+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI   35 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVI   35 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEE
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEE
Confidence            5789999999999999998874  223356554

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.21  E-value=0.0073  Score=51.11  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCc
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      +.+.||+|+|||.+.+.+++-+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhc
Confidence            44579999999999999998654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.006  Score=51.34  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+.++||+|+|||.|.+.|+..+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            577999999999999999998753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.04  E-value=0.0039  Score=51.03  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=21.5

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.+++++||--.+.+...     .+++.+...+..++++
T Consensus       206 ~~~~i~vDE~QD~~~~~~-----~~l~~~~~~~~~~~~~  239 (306)
T d1uaaa1         206 KIRYLLVDEYQDTNTSQY-----ELVKLLVGSRARFTVV  239 (306)
T ss_dssp             TCSEEEESCGGGCBHHHH-----HHHHHHHTTTCCEEEE
T ss_pred             HhhHHHHHHHHHhhHHHH-----hhhhhcccCCCcceEe
Confidence            678999999866887654     3444554444455433

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.97  E-value=0.0048  Score=51.02  Aligned_cols=15  Identities=40%  Similarity=0.592  Sum_probs=12.8

Q ss_pred             EEEEcCCCCcHHHHH
Q 025844            5 QLVIGPAGSGKSTYC   19 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl   19 (247)
                      +.|.|++||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            568999999999754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.96  E-value=0.0062  Score=50.50  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+|.-+||||||+++|.|.-
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999964

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0053  Score=53.12  Aligned_cols=30  Identities=33%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHH-hCCcCCCceEEE
Q 025844            5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHI   35 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v~i   35 (247)
                      +.|+|++||||||+++.+. ..+.. ++.+.+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~-g~~~ii   83 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLR-GDRMVI   83 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT-TCEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhC-CCCEEE
Confidence            5899999999999987544 44433 334444

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0053  Score=49.20  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      .+.+-||+|+||||+.+.++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcC
Confidence            4678899999999999999876543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0086  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -+.++||+|.|||+++..++.-+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            467999999999999999997543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.0079  Score=49.56  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      ++|+|.-+||||||+++|.|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999964

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.0088  Score=49.29  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -+.++||+|+|||++++.++.-+.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHH
Confidence            367999999999999999997543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.57  E-value=0.008  Score=49.47  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++.+.||.++|||||+++|..++
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            578899999999999999999987

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.018  Score=49.23  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=22.0

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (247)
                      +.+++|+||-.++|.....    .++..+ ..+..+|++
T Consensus       261 ~~d~lIIDEaSmv~~~l~~----~ll~~~-~~~~~lILv  294 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMS----RLIDAL-PDHARVIFL  294 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHH----HHHHTC-CTTCEEEEE
T ss_pred             ccceeeehhhhccCHHHHH----HHHHHh-cCCCEEEEE
Confidence            4689999999998875432    344444 345566544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.29  E-value=0.011  Score=48.82  Aligned_cols=20  Identities=15%  Similarity=0.164  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~   23 (247)
                      -++|+|+.|||||||+..|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37999999999999999984

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.06  E-value=0.014  Score=49.39  Aligned_cols=35  Identities=17%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g   37 (247)
                      ..|+|=|+=||||||+++.|+..+...+..+.+..
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            34788999999999999999999887655666654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.97  E-value=0.02  Score=48.50  Aligned_cols=33  Identities=18%  Similarity=0.042  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      ..|.|=|+=||||||+++.|+..+.... .+.+.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            4577889999999999999999887654 44443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.97  E-value=0.0085  Score=47.33  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -|+++.||+++|||+++.+|.+++.
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHhC
Confidence            5789999999999999999998863

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.68  E-value=0.015  Score=49.90  Aligned_cols=23  Identities=43%  Similarity=0.756  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      .+.++||+|+|||-+.|.|+.++
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeeeCCCCccHHHHHHHHHhhc
Confidence            36789999999999999999875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.02  Score=46.35  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=34.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~   41 (247)
                      |+-++.+.|.=|.||||+.-.++..+...+.+|.+...||+
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34456789999999999998888887777778999999985

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.44  E-value=0.026  Score=40.79  Aligned_cols=34  Identities=9%  Similarity=0.084  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCcCCC-ceEEEe
Q 025844            3 YAQLVIGPAGSGKSTYCSSLY-RHCETVR-RTMHIV   36 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~~~-G~v~i~   36 (247)
                      |++.+.|-+||||||+.++|. -+++..+ +.|.+-
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll   42 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIF   42 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence            789999999999999999995 5555443 456544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.33  E-value=0.032  Score=45.00  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceE
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v   33 (247)
                      +.|.|+.|+||+++.+.|...-.......
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~   54 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPF   54 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCE
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCccccc
Confidence            67899999999999999987655544333

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.14  E-value=0.02  Score=48.06  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      .+.++||+|+|||.+.+.|+..+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            467889999999999999998764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.08  E-value=0.023  Score=48.02  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcC
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCET   28 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~   28 (247)
                      |+|=|+=||||||+++.|+..+..
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEECCcCCCHHHHHHHHHHHhCC
Confidence            788999999999999999987653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.025  Score=46.91  Aligned_cols=26  Identities=15%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETV   29 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~   29 (247)
                      -.+|+|++|+|||||+..++.....+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            36899999999999999998765443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.023  Score=43.63  Aligned_cols=36  Identities=14%  Similarity=0.105  Sum_probs=30.2

Q ss_pred             EEEEcCC-CCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844            5 QLVIGPA-GSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (247)
Q Consensus         5 ~~iiGpn-GSGKSTLl~~l~g~l~~~~G~v~i~g~d~   40 (247)
                      +.|.|.+ |+||||+.-.|+..+...+-+|.+...|+
T Consensus         4 ~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            5789997 99999999999999888777888875544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.08  E-value=0.031  Score=48.23  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025844            5 QLVIGPAGSGKSTYCSSLYR   24 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g   24 (247)
                      ..++||+|.|||+++..++.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            57899999999999876664

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.99  E-value=0.059  Score=43.84  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~   25 (247)
                      .-++|+|.+-+|||||++.|.|-
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEEecCccchhhhhhhhhcc
Confidence            45899999999999999999984

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.61  E-value=0.069  Score=42.77  Aligned_cols=40  Identities=30%  Similarity=0.446  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~   43 (247)
                      .++|.|.=|+||||+.-.|+..+...+-+|.+...||+..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~   42 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD   42 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            4567899999999999999888776666899999998643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.53  E-value=0.078  Score=43.53  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEe
Q 025844            4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIV   36 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~   36 (247)
                      -++|+|++|+|||||+..++.. .+.+.+-+.+.
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~  103 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  103 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE
Confidence            3689999999999998777654 33344434333

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.50  E-value=0.075  Score=42.63  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~   42 (247)
                      -++.+.|.=|+||||+.-.|+-.+...+.+|.+...||+.
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4677889999999999888877766666689999999863

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.43  E-value=0.68  Score=33.90  Aligned_cols=19  Identities=26%  Similarity=0.618  Sum_probs=15.8

Q ss_pred             hccCCeeeeecccccccch
Q 025844          163 QLELPHVNILSKMDLVTNK  181 (247)
Q Consensus       163 ~~~~p~i~vlsk~dll~~~  181 (247)
                      ..+.|.+.|+||+|+++..
T Consensus       119 ~~~~p~iiv~NK~D~~~~~  137 (184)
T d2cxxa1         119 ELDIPTIVAVNKLDKIKNV  137 (184)
T ss_dssp             HTTCCEEEEEECGGGCSCH
T ss_pred             HcCCCEEEEEeeeehhhhH
Confidence            4588999999999998654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.91  E-value=0.058  Score=38.60  Aligned_cols=30  Identities=10%  Similarity=0.114  Sum_probs=20.9

Q ss_pred             CCCEEEEeCCCcccHHhHHHHHHHHHHHHHh
Q 025844           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~  128 (247)
                      +-+++|+||--.++..+...+. .+++.++.
T Consensus        94 ~~~~vIiDE~H~~~~~~~~~~~-~~l~~~~~  123 (136)
T d1a1va1          94 AYDIIICDECHSTDATSILGIG-TVLDQAET  123 (136)
T ss_dssp             CCSEEEEETTTCCSHHHHHHHH-HHHHHTTT
T ss_pred             cCCEEEEecccccCHHHHHHHH-HHHHHHHH
Confidence            6799999999778776654444 55555543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.22  E-value=0.1  Score=42.20  Aligned_cols=42  Identities=31%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC
Q 025844            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~   43 (247)
                      |+. ++|-|.=|.||||+.-.|+..+...+-+|.+.+.||+..
T Consensus         2 Mr~-IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~   43 (289)
T d2afhe1           2 MRQ-CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD   43 (289)
T ss_dssp             CEE-EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred             ccE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            543 457899999999998888776655555899999999653

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=88.93  E-value=0.15  Score=41.77  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=22.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      ++|+|++|+|||||+..+.-....+...+.+.
T Consensus        70 ~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~  101 (276)
T d1fx0a3          70 ELIIGDRQTGKTAVATDTILNQQGQNVICVYV  101 (276)
T ss_dssp             CBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred             EeeccCCCCChHHHHHHHHhhhcccCceeeee
Confidence            57999999999999987655545444444443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=87.89  E-value=0.099  Score=48.25  Aligned_cols=25  Identities=16%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.|.|.+|||||+-+|.+..++.
T Consensus        87 QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999877663

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.71  E-value=0.077  Score=41.79  Aligned_cols=19  Identities=21%  Similarity=0.454  Sum_probs=14.6

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 025844            5 QLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~   23 (247)
                      +.+++|.|||||+..-..+
T Consensus        61 ~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHH
T ss_pred             EEEEecCCChHHHHHHHHH
Confidence            5688999999998654444

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.64  E-value=0.1  Score=48.32  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.|.|.+|||||+-+|.+..++.
T Consensus       126 QsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999987763

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.63  E-value=0.064  Score=37.74  Aligned_cols=33  Identities=15%  Similarity=0.275  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHH-HHHHHhCCcCCCceEEEe
Q 025844            4 AQLVIGPAGSGKSTY-CSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         4 ~~~iiGpnGSGKSTL-l~~l~g~l~~~~G~v~i~   36 (247)
                      .+.|.+|.|||||+. +..+..........+.+.
T Consensus         9 ~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~   42 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLPQILAECARRRLRTLVL   42 (140)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEcCCCCChhHHHHHHHHHHhhhcCceeeee
Confidence            456789999999944 344444443333444443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.50  E-value=0.13  Score=43.06  Aligned_cols=16  Identities=31%  Similarity=0.630  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCcHHHHH
Q 025844            4 AQLVIGPAGSGKSTYC   19 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl   19 (247)
                      +..+.|.+|+|||||-
T Consensus        16 valffGLSGTGKTTLs   31 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEEECTTSCHHHHT
T ss_pred             EEEEEccCCCCccccc
Confidence            4578999999999974

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.43  E-value=0.11  Score=48.15  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++.|-|.+|||||+-+|.+..++
T Consensus        92 Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478899999999999999998876

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.14  Score=42.68  Aligned_cols=16  Identities=31%  Similarity=0.630  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCcHHHHH
Q 025844            4 AQLVIGPAGSGKSTYC   19 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl   19 (247)
                      +..+.|.+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3568999999999975

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=86.86  E-value=1.4  Score=32.16  Aligned_cols=60  Identities=15%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             hhccCCeeeeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChH---HHH
Q 025844          162 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES---RLL  238 (247)
Q Consensus       162 ~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~l~  238 (247)
                      -..+.|++.|+||+|+......                      ....+...+.+-+........+|+|+.++.   .|+
T Consensus       117 ~~~~~~~i~v~nK~D~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~  174 (186)
T d1mkya2         117 ERRGRASVVVFNKWDLVVHREK----------------------RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMI  174 (186)
T ss_dssp             HHTTCEEEEEEECGGGSTTGGG----------------------CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHH
T ss_pred             HHcCCceeeeccchhhhcchhh----------------------hhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHH
Confidence            4568899999999999764410                      011111222222333444677788887666   666


Q ss_pred             HHhhh
Q 025844          239 SQIMK  243 (247)
Q Consensus       239 ~~id~  243 (247)
                      ..|++
T Consensus       175 ~~i~~  179 (186)
T d1mkya2         175 DAMNL  179 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.62  E-value=0.13  Score=48.26  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.|.|.+|||||+-+|.+..++.
T Consensus       124 QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         124 QSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999998887763

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.07  E-value=0.35  Score=36.88  Aligned_cols=28  Identities=32%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~   36 (247)
                      +.|+|+++||||.+...+++.    .+.+.+.
T Consensus         2 iLVtGGarSGKS~~AE~l~~~----~~~~~Yi   29 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD----APQVLYI   29 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS----CSSEEEE
T ss_pred             EEEECCCCccHHHHHHHHHhc----CCCcEEE
Confidence            689999999999999988743    4455554

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=85.72  E-value=0.15  Score=47.73  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l~   27 (247)
                      -++.|-|.+|||||.-+|.+..++.
T Consensus       122 Q~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         122 QSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999888887764

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.13  E-value=0.2  Score=41.85  Aligned_cols=16  Identities=31%  Similarity=0.634  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCcHHHHH
Q 025844            4 AQLVIGPAGSGKSTYC   19 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl   19 (247)
                      +..+.|-+|+|||||.
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3568999999999997

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.38  E-value=0.3  Score=36.72  Aligned_cols=18  Identities=28%  Similarity=0.481  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 025844            5 QLVIGPAGSGKSTYCSSL   22 (247)
Q Consensus         5 ~~iiGpnGSGKSTLl~~l   22 (247)
                      ..+.+|.|||||...-.+
T Consensus        26 ~lv~~pTGsGKT~i~~~~   43 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMI   43 (200)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHH
Confidence            357899999999743333

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=84.33  E-value=0.19  Score=46.54  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (247)
Q Consensus         3 ~~~~iiGpnGSGKSTLl~~l~g~l   26 (247)
                      -++.|.|++|||||+-.|.+..++
T Consensus        95 Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          95 QSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            468899999999999999988765

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.75  E-value=0.14  Score=39.06  Aligned_cols=14  Identities=29%  Similarity=0.470  Sum_probs=12.1

Q ss_pred             EEEEcCCCCcHHHH
Q 025844            5 QLVIGPAGSGKSTY   18 (247)
Q Consensus         5 ~~iiGpnGSGKSTL   18 (247)
                      +.+.+|.|||||+.
T Consensus        43 ~il~apTGsGKT~~   56 (202)
T d2p6ra3          43 LLLAMPTAAGKTLL   56 (202)
T ss_dssp             EEEECSSHHHHHHH
T ss_pred             EEEEcCCCCchhHH
Confidence            46899999999975

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.59  E-value=0.38  Score=34.98  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCcHHH-HHHHHHhCCcCCCceEEEec
Q 025844            1 MGYAQLVIGPAGSGKST-YCSSLYRHCETVRRTMHIVN   37 (247)
Q Consensus         1 ~~~~~~iiGpnGSGKST-Ll~~l~g~l~~~~G~v~i~g   37 (247)
                      |.+...++||=.||||| |++.+..+ +..+.++.+.+
T Consensus         1 ~G~L~~i~GpMfsGKTteLi~~~~~~-~~~~~kv~~ik   37 (139)
T d2b8ta1           1 IGWIEFITGPMFAGKTAELIRRLHRL-EYADVKYLVFK   37 (139)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             CcEEEEEEccccCHHHHHHHHHHHHH-HHCCCcEEEEE
Confidence            56788999999999999 67776554 33345666654

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.10  E-value=0.54  Score=36.30  Aligned_cols=30  Identities=7%  Similarity=0.077  Sum_probs=22.1

Q ss_pred             CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844           98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (247)
Q Consensus        98 ~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (247)
                      +.+++++||--. +|......+. ++++.+.+
T Consensus       151 ~l~~lVlDEad~lld~~f~~~v~-~I~~~~~~  181 (212)
T d1qdea_         151 KIKMFILDEADEMLSSGFKEQIY-QIFTLLPP  181 (212)
T ss_dssp             TCCEEEEETHHHHHHTTCHHHHH-HHHHHSCT
T ss_pred             cceEEeehhhhhhcccchHHHHH-HHHHhCCC
Confidence            689999999998 8865555554 77777643

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.90  E-value=0.32  Score=39.84  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025844            4 AQLVIGPAGSGKSTYCSSLY   23 (247)
Q Consensus         4 ~~~iiGpnGSGKSTLl~~l~   23 (247)
                      -++|+|++|+||||++..+.
T Consensus        70 r~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHH
Confidence            35899999999999987554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=81.75  E-value=2.3  Score=30.60  Aligned_cols=18  Identities=6%  Similarity=0.145  Sum_probs=15.0

Q ss_pred             hccCCeeeeecccccccc
Q 025844          163 QLELPHVNILSKMDLVTN  180 (247)
Q Consensus       163 ~~~~p~i~vlsk~dll~~  180 (247)
                      ..+.|.+-|+||+|++++
T Consensus       107 ~~~~pviiv~NK~Dl~~~  124 (171)
T d1mkya1         107 KSTVDTILVANKAENLRE  124 (171)
T ss_dssp             HHTCCEEEEEESCCSHHH
T ss_pred             cccccccccchhhhhhhh
Confidence            467899999999999753

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=81.06  E-value=0.2  Score=40.20  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=16.0

Q ss_pred             EEEEEcCCCCcHHH-HH-HHHHhCC
Q 025844            4 AQLVIGPAGSGKST-YC-SSLYRHC   26 (247)
Q Consensus         4 ~~~iiGpnGSGKST-Ll-~~l~g~l   26 (247)
                      .+.|.+|.|||||+ ++ .++....
T Consensus        11 ~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2          11 LTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46789999999997 33 4444433