Citrus Sinensis ID: 025861

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MKVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQHHDGYEEIPSGPESA
ccHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEccccccccEEEEccccEEcccEEEEEEccEEEEccccccccccccccccccEEEEccEEEEEEEEEEEEEEccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEEEEEEcccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEEHHHcccccEEEEEccccccccEEEEEEcccEEcccccccccccccccccccEEEEEcEEEEcEEEEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHccccccccc
MKVSANVIYLSGvglategwpegmydgLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTrdgqrqkvsiYDLVVGDIVhlsigdqvpadgifiSGYSLLidesslsgesepmyicdenpfllagtkvqdgSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCipvkksepklqhhdgyeeipsgpesa
MKVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKqslqfrdldreKKKIFiqvtrdgqrqkvsIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVkksepklqhhdgyeeipsgpesa
MKVSANVIYLSGVGLATEGWPEGMYDGLGiilsillvvmvTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQHHDGYEEIPSGPESA
****ANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSL****EPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPV***********************
MKVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRD**REKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQHHD************
MKVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQHHDG***********
MKVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDES*LSGE**PMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQHHDGYEEIPS*****
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
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MKVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQHHDGYEEIPSGPESA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
Q2QY12 1039 Probable calcium-transpor yes no 0.858 0.204 0.606 4e-72
Q2RAS0 1017 Probable calcium-transpor yes no 0.858 0.208 0.606 4e-72
Q9M2L4 1025 Putative calcium-transpor yes no 0.603 0.145 0.832 6e-71
O22218 1030 Calcium-transporting ATPa no no 0.603 0.144 0.825 3e-70
Q8RUN1 1043 Calcium-transporting ATPa no no 0.619 0.146 0.774 7e-68
O64806 1015 Putative calcium-transpor no no 0.611 0.148 0.761 3e-65
Q2QMX9 1020 Calcium-transporting ATPa no no 0.603 0.146 0.748 2e-64
O81108 1014 Calcium-transporting ATPa no no 0.611 0.148 0.748 3e-64
Q37145 1020 Calcium-transporting ATPa no no 0.611 0.148 0.741 2e-61
Q6ATV4 1033 Calcium-transporting ATPa no no 0.655 0.156 0.652 2e-59
>sp|Q2QY12|ACA4_ORYSJ Probable calcium-transporting ATPase 4, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0136900 PE=3 SV=1 Back     alignment and function desciption
 Score =  271 bits (692), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 168/226 (74%), Gaps = 14/226 (6%)

Query: 12  GVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ 71
            VGLATEGWP+GMYDGLGIILSI LVVMVTA+SDYKQSLQF++LD EKKKIFI VTRDG+
Sbjct: 188 AVGLATEGWPKGMYDGLGIILSIFLVVMVTAVSDYKQSLQFKELDNEKKKIFIHVTRDGR 247

Query: 72  RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLA 131
           RQK+SIYDLVVGDIVHLSIGDQVPADG++I GYSLLIDESSLSGES+P+Y+  + PF+LA
Sbjct: 248 RQKISIYDLVVGDIVHLSIGDQVPADGLYIHGYSLLIDESSLSGESDPVYVSQDKPFILA 307

Query: 132 GTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------------VGILVLTV 178
           GTKVQDGS KM+VT VGMRTEWGKLM TL+EG  D                 +G++   +
Sbjct: 308 GTKVQDGSAKMIVTAVGMRTEWGKLMSTLSEGGEDETPLQVKLNGVATIIGKIGLVFAIL 367

Query: 179 AFQIIIVEFLGALASTVP-LSWHLWLLCILIGAVSMPIAVVIKCIP 223
            F +++V FL     TV  L W+      ++   +  + +++  +P
Sbjct: 368 TFLVLLVRFLIDKGMTVGLLKWYSTDALTIVNYFATAVTIIVVAVP 413
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8
>sp|Q2RAS0|ACA5_ORYSJ Probable calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os11g0140400 PE=3 SV=1 Back     alignment and function description
>sp|Q9M2L4|ACA11_ARATH Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=3 SV=1 Back     alignment and function description
>sp|O22218|ACA4_ARATH Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1 Back     alignment and function description
>sp|Q8RUN1|ACA3_ORYSJ Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1 Back     alignment and function description
>sp|O64806|ACA7_ARATH Putative calcium-transporting ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=ACA7 PE=3 SV=2 Back     alignment and function description
>sp|Q2QMX9|ACA1_ORYSJ Calcium-transporting ATPase 1, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0586600 PE=2 SV=1 Back     alignment and function description
>sp|O81108|ACA2_ARATH Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1 Back     alignment and function description
>sp|Q37145|ACA1_ARATH Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3 Back     alignment and function description
>sp|Q6ATV4|ACA2_ORYSJ Calcium-transporting ATPase 2, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os03g0616400 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
242084534 1037 hypothetical protein SORBIDRAFT_08g00126 0.854 0.203 0.626 1e-71
413924830 1042 hypothetical protein ZEAMMB73_648201 [Ze 0.862 0.204 0.603 4e-71
242067357 1037 hypothetical protein SORBIDRAFT_05g00238 0.854 0.203 0.613 4e-71
346703260 1041 hypothetical_protein [Oryza brachyantha] 0.854 0.202 0.613 8e-71
357161044 1035 PREDICTED: probable calcium-transporting 0.854 0.203 0.622 1e-70
18483249 1037 type IIB calcium ATPase [Medicago trunca 0.716 0.170 0.7 1e-70
356572014 1035 PREDICTED: putative calcium-transporting 0.611 0.145 0.835 2e-70
125533331 1039 hypothetical protein OsI_35040 [Oryza sa 0.858 0.204 0.610 2e-70
115487236 1039 Os12g0136900 [Oryza sativa Japonica Grou 0.858 0.204 0.606 2e-70
346703357 1010 hypothetical_protein [Oryza glaberrima] 0.858 0.209 0.606 2e-70
>gi|242084534|ref|XP_002442692.1| hypothetical protein SORBIDRAFT_08g001260 [Sorghum bicolor] gi|241943385|gb|EES16530.1| hypothetical protein SORBIDRAFT_08g001260 [Sorghum bicolor] Back     alignment and taxonomy information
 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/225 (62%), Positives = 170/225 (75%), Gaps = 14/225 (6%)

Query: 13  VGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQR 72
           VGLA+EGWP+GMYDGLGIILSILLVVMVTA+SDY+QSLQF++LD EKKKIFI VTRDG R
Sbjct: 188 VGLASEGWPKGMYDGLGIILSILLVVMVTAVSDYRQSLQFKELDNEKKKIFIHVTRDGCR 247

Query: 73  QKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAG 132
           QK+SIYDLVVGDIVHLSIGDQVPADG++I GYSLLIDESSLSGESEP+YI  + PF+LAG
Sbjct: 248 QKISIYDLVVGDIVHLSIGDQVPADGLYIHGYSLLIDESSLSGESEPVYISQDKPFILAG 307

Query: 133 TKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------------VGILVLTVA 179
           TKVQDGS KMLVT VGMRTEWG+LM TL+EG  D                 +G+L  T+ 
Sbjct: 308 TKVQDGSAKMLVTAVGMRTEWGRLMSTLSEGGEDETPLQVKLNGVATIIGKIGLLFATLT 367

Query: 180 FQIIIVEFLGALASTVPLS-WHLWLLCILIGAVSMPIAVVIKCIP 223
           F +++V FL     TV LS W+      ++   +  + +++  +P
Sbjct: 368 FVVLMVRFLIEKGLTVGLSKWYSTDALTIVNYFATAVTIIVVAVP 412

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|413924830|gb|AFW64762.1| hypothetical protein ZEAMMB73_648201 [Zea mays] Back     alignment and taxonomy information
>gi|242067357|ref|XP_002448955.1| hypothetical protein SORBIDRAFT_05g002380 [Sorghum bicolor] gi|241934798|gb|EES07943.1| hypothetical protein SORBIDRAFT_05g002380 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|346703260|emb|CBX25358.1| hypothetical_protein [Oryza brachyantha] Back     alignment and taxonomy information
>gi|357161044|ref|XP_003578960.1| PREDICTED: probable calcium-transporting ATPase 4, plasma membrane-type-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|18483249|gb|AAL73984.1|AF466149_1 type IIB calcium ATPase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356572014|ref|XP_003554165.1| PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type-like [Glycine max] Back     alignment and taxonomy information
>gi|125533331|gb|EAY79879.1| hypothetical protein OsI_35040 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115487236|ref|NP_001066105.1| Os12g0136900 [Oryza sativa Japonica Group] gi|110832728|sp|Q2QY12.1|ACA4_ORYSJ RecName: Full=Probable calcium-transporting ATPase 4, plasma membrane-type; AltName: Full=Ca(2+)-ATPase isoform 4 gi|77552962|gb|ABA95758.1| Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed [Oryza sativa Japonica Group] gi|113648612|dbj|BAF29124.1| Os12g0136900 [Oryza sativa Japonica Group] gi|125578434|gb|EAZ19580.1| hypothetical protein OsJ_35157 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|346703357|emb|CBX25454.1| hypothetical_protein [Oryza glaberrima] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2082528 1025 ACA11 "autoinhibited Ca2+-ATPa 0.615 0.148 0.782 2.3e-87
TAIR|locus:2062673 1030 ACA4 ""autoinhibited Ca(2+)-AT 0.615 0.147 0.769 1.1e-84
TAIR|locus:2059201 1015 ACA7 "auto-regulated Ca2+-ATPa 0.611 0.148 0.708 1.4e-68
TAIR|locus:2120096 1014 ACA2 "calcium ATPase 2" [Arabi 0.611 0.148 0.695 2e-68
TAIR|locus:2029794 1020 ACA1 "autoinhibited Ca2+-ATPas 0.611 0.148 0.688 5.2e-66
TAIR|locus:2123924 1069 ACA10 "autoinhibited Ca(2+)-AT 0.700 0.161 0.461 1.8e-53
TAIR|locus:2175579 1074 ACA8 ""autoinhibited Ca2+ -ATP 0.607 0.139 0.516 9.2e-52
TAIR|locus:2094726 1086 ACA9 "autoinhibited Ca(2+)-ATP 0.696 0.158 0.461 1.2e-49
TAIR|locus:2087363 1033 AT3G63380 [Arabidopsis thalian 0.627 0.150 0.435 4e-43
TAIR|locus:2084578 1017 AT3G22910 [Arabidopsis thalian 0.607 0.147 0.456 2.7e-42
TAIR|locus:2082528 ACA11 "autoinhibited Ca2+-ATPase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 607 (218.7 bits), Expect = 2.3e-87, Sum P(2) = 2.3e-87
 Identities = 119/152 (78%), Positives = 132/152 (86%)

Query:    12 GVGLATEGWPEGMYDGLGXXXXXXXXXXXTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ 71
             GVG+ATEG+P+GMYDG G           TAISDYKQSLQFRDLDREKKKI IQVTRDG 
Sbjct:   183 GVGVATEGFPKGMYDGTGILLSIILVVMVTAISDYKQSLQFRDLDREKKKIIIQVTRDGS 242

Query:    72 RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLA 131
             RQ+VSI+DLVVGD+VHLSIGDQVPADGIFISGY+L IDESSLSGESEP ++  E PFLL+
Sbjct:   243 RQEVSIHDLVVGDVVHLSIGDQVPADGIFISGYNLEIDESSLSGESEPSHVNKEKPFLLS 302

Query:   132 GTKVQDGSVKMLVTTVGMRTEWGKLMETLNEG 163
             GTKVQ+GS KMLVTTVGMRTEWGKLM+TL+EG
Sbjct:   303 GTKVQNGSAKMLVTTVGMRTEWGKLMDTLSEG 334
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005388 "calcium-transporting ATPase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0006754 "ATP biosynthetic process" evidence=IEA
GO:0006812 "cation transport" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0070588 "calcium ion transmembrane transport" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IGI
GO:0043069 "negative regulation of programmed cell death" evidence=IGI
GO:0055081 "anion homeostasis" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
TAIR|locus:2062673 ACA4 ""autoinhibited Ca(2+)-ATPase, isoform 4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059201 ACA7 "auto-regulated Ca2+-ATPase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120096 ACA2 "calcium ATPase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029794 ACA1 "autoinhibited Ca2+-ATPase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123924 ACA10 "autoinhibited Ca(2+)-ATPase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175579 ACA8 ""autoinhibited Ca2+ -ATPase, isoform 8"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094726 ACA9 "autoinhibited Ca(2+)-ATPase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087363 AT3G63380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084578 AT3G22910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M2L4ACA11_ARATH3, ., 6, ., 3, ., 80.83220.60320.1453yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb08g001260.1
hypothetical protein (1038 aa)
(Sorghum bicolor)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
TIGR01517 944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 2e-64
pfam00122222 pfam00122, E1-E2_ATPase, E1-E2 ATPase 4e-34
COG0474 917 COG0474, MgtA, Cation transport ATPase [Inorganic 2e-28
TIGR01517944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 8e-21
TIGR01494 543 TIGR01494, ATPase_P-type, ATPase, P-type (transpor 2e-18
TIGR01522 884 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium- 4e-17
TIGR01647 754 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e 8e-16
TIGR01106 997 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux 1e-14
COG2217 713 COG2217, ZntA, Cation transport ATPase [Inorganic 1e-14
TIGR01525 556 TIGR01525, ATPase-IB_hvy, heavy metal translocatin 1e-13
TIGR01116 917 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic 1e-13
TIGR01511 572 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans 2e-11
TIGR01657 1054 TIGR01657, P-ATPase-V, P-type ATPase of unknown pu 4e-11
PRK15122 903 PRK15122, PRK15122, magnesium-transporting ATPase; 1e-10
TIGR01512 536 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb 2e-10
TIGR01524 867 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating 2e-10
TIGR01523 1053 TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu 1e-09
PRK10517 902 PRK10517, PRK10517, magnesium-transporting ATPase 8e-09
PRK11033 741 PRK11033, zntA, zinc/cadmium/mercury/lead-transpor 2e-08
pfam00689175 pfam00689, Cation_ATPase_C, Cation transporting AT 4e-08
PRK10671 834 PRK10671, copA, copper exporting ATPase; Provision 2e-06
PRK14010 673 PRK14010, PRK14010, potassium-transporting ATPase 8e-06
COG2216 681 COG2216, KdpB, High-affinity K+ transport system, 2e-05
PRK01122 679 PRK01122, PRK01122, potassium-transporting ATPase 2e-05
TIGR01497 675 TIGR01497, kdpB, K+-transporting ATPase, B subunit 7e-05
TIGR01652 1057 TIGR01652, ATPase-Plipid, phospholipid-translocati 9e-05
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information 
 Score =  215 bits (548), Expect = 2e-64
 Identities = 85/162 (52%), Positives = 114/162 (70%), Gaps = 1/162 (0%)

Query: 7   VIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQV 66
           V+ L   G        G  +G+ I++S++LVV+VTA++DYK+ LQFR L+REK    I V
Sbjct: 112 VLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAV 171

Query: 67  TRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYI-CDE 125
            R GQ Q++SI+D+VVGDIV LS GD VPADG+FISG SL IDESS++GES+P+     +
Sbjct: 172 IRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGPVQ 231

Query: 126 NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDS 167
           +PFLL+GT V +GS +MLVT VG+ +  GKLM  L +   DS
Sbjct: 232 DPFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRQAGEDS 273

This model describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes. In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by TIGR01116 and TIGR01522. This model is well separated from those. Length = 944
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase Back     alignment and domain information
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus Back     alignment and domain information
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit Back     alignment and domain information
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
COG2217 713 ZntA Cation transport ATPase [Inorganic ion transp 100.0
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 100.0
PRK11033 741 zntA zinc/cadmium/mercury/lead-transporting ATPase 100.0
TIGR01647 755 ATPase-IIIA_H plasma-membrane proton-efflux P-type 100.0
PRK10671 834 copA copper exporting ATPase; Provisional 100.0
TIGR01511 562 ATPase-IB1_Cu copper-(or silver)-translocating P-t 100.0
TIGR01512 536 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo 100.0
TIGR01522 884 ATPase-IIA2_Ca golgi membrane calcium-translocatin 100.0
TIGR01517 941 ATPase-IIB_Ca plasma-membrane calcium-translocatin 100.0
PRK10517 902 magnesium-transporting ATPase MgtA; Provisional 100.0
PRK01122 679 potassium-transporting ATPase subunit B; Provision 100.0
TIGR01524 867 ATPase-IIIB_Mg magnesium-translocating P-type ATPa 100.0
TIGR01525 556 ATPase-IB_hvy heavy metal translocating P-type ATP 100.0
TIGR01497 675 kdpB K+-transporting ATPase, B subunit. One sequen 100.0
PRK15122 903 magnesium-transporting ATPase; Provisional 100.0
KOG0204 1034 consensus Calcium transporting ATPase [Inorganic i 100.0
TIGR01116 917 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium 100.0
PRK14010 673 potassium-transporting ATPase subunit B; Provision 100.0
TIGR01523 1053 ATPase-IID_K-Na potassium and/or sodium efflux P-t 100.0
TIGR01106 997 ATPase-IIC_X-K sodium or proton efflux -- potassiu 100.0
PF00122230 E1-E2_ATPase: E1-E2 ATPase p-type cation-transport 100.0
KOG0202 972 consensus Ca2+ transporting ATPase [Inorganic ion 99.98
COG0474 917 MgtA Cation transport ATPase [Inorganic ion transp 99.97
TIGR01657 1054 P-ATPase-V P-type ATPase of unknown pump specifici 99.97
KOG0205 942 consensus Plasma membrane H+-transporting ATPase [ 99.97
TIGR01494 499 ATPase_P-type ATPase, P-type (transporting), HAD s 99.97
KOG0208 1140 consensus Cation transport ATPase [Inorganic ion t 99.94
KOG0203 1019 consensus Na+/K+ ATPase, alpha subunit [Inorganic 99.9
COG2216 681 KdpB High-affinity K+ transport system, ATPase cha 99.9
TIGR01652 1057 ATPase-Plipid phospholipid-translocating P-type AT 99.88
KOG0209 1160 consensus P-type ATPase [Inorganic ion transport a 99.85
PLN03190 1178 aminophospholipid translocase; Provisional 99.84
KOG0210 1051 consensus P-type ATPase [Inorganic ion transport a 99.53
KOG0206 1151 consensus P-type ATPase [General function predicti 99.32
COG0474 917 MgtA Cation transport ATPase [Inorganic ion transp 92.59
KOG4383 1354 consensus Uncharacterized conserved protein [Funct 91.89
KOG02041034 consensus Calcium transporting ATPase [Inorganic i 85.59
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3e-41  Score=324.06  Aligned_cols=231  Identities=24%  Similarity=0.263  Sum_probs=186.9

Q ss_pred             chhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEE-CCeEEEEeCCCc
Q 025861            2 KVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR-DGQRQKVSIYDL   80 (247)
Q Consensus         2 gl~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r-~g~~~~v~~~~l   80 (247)
                      |++.|+++|.+..+..    .+|.++..+++++.++.++|.+.+.++++.+++|.++.|+ ++++++ ||++++|+.+++
T Consensus       156 a~~~A~~~s~~~~~~~----~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~-~A~~~~~~~~~~~v~v~~v  230 (713)
T COG2217         156 ATIGAYAYSLYATLFP----VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPK-TATVVRGDGEEEEVPVEEV  230 (713)
T ss_pred             HHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-EEEEEecCCcEEEEEHHHC
Confidence            5566777776655444    3556666666668889999999999999999999999996 676655 566899999999


Q ss_pred             ccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhh
Q 025861           81 VVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL  160 (247)
Q Consensus        81 v~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~  160 (247)
                      ++||++.|+|||+||+||++++|++ .+|||++||||.|+.|++||. |++||.|.+|..+++|+++|.+|+++||++++
T Consensus       231 ~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs~PV~k~~Gd~-V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LV  308 (713)
T COG2217         231 QVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGESLPVEKKPGDE-VFAGTVNLDGSLTIRVTRVGADTTLARIIRLV  308 (713)
T ss_pred             CCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCCCCEecCCCCE-EeeeEEECCccEEEEEEecCccCHHHHHHHHH
Confidence            9999999999999999999999999 799999999999999999999 99999999999999999999999999999999


Q ss_pred             ccccccchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHH-hHhhhhhhheeeecccccCCCCcccc
Q 025861          161 NEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSEPKLQ  232 (247)
Q Consensus       161 ~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~il~ia~P~Al~l~~~P~a~~~~~~~  232 (247)
                      ++++.+|++.       ...+++.+++...+.+.+++++..  .+|..|+++. .+|+++|||||+++ +|.+...+.-.
T Consensus       309 e~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~--~~~~~a~~~a~avLVIaCPCALgLA-tP~ai~~g~g~  385 (713)
T COG2217         309 EEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG--GDWETALYRALAVLVIACPCALGLA-TPTAILVGIGR  385 (713)
T ss_pred             HHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHhheeeeCccHHHhH-HHHHHHHHHHH
Confidence            9999999654       344444444444443333333322  4677777776 48999999999999 99987766555


Q ss_pred             -cccceeecCC
Q 025861          233 -HHDGYEEIPS  242 (247)
Q Consensus       233 -~~~~~~~~~~  242 (247)
                       +++|+..++|
T Consensus       386 aA~~GILiK~g  396 (713)
T COG2217         386 AARRGILIKGG  396 (713)
T ss_pred             HHhCceEEeCh
Confidence             5555555544

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>PRK10517 magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>PRK01122 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase Back     alignment and domain information
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase Back     alignment and domain information
>TIGR01497 kdpB K+-transporting ATPase, B subunit Back     alignment and domain information
>PRK15122 magnesium-transporting ATPase; Provisional Back     alignment and domain information
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>PRK14010 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03190 aminophospholipid translocase; Provisional Back     alignment and domain information
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0206 consensus P-type ATPase [General function prediction only] Back     alignment and domain information
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4383 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
3n23_A 992 Crystal Structure Of The High Affinity Complex Betw 2e-10
3b8e_A 998 Crystal Structure Of The Sodium-Potassium Pump Leng 2e-10
2zxe_A 1028 Crystal Structure Of The Sodium - Potassium Pump In 3e-10
3b8c_A 885 Crystal Structure Of A Plasma Membrane Proton Pump 3e-08
3ixz_A 1034 Pig Gastric H+K+-Atpase Complexed With Aluminium Fl 5e-08
2dqs_A 995 Crystal Structure Of The Calcium Pump With Amppcp I 5e-08
1kju_A 994 Ca2+-Atpase In The E2 State Length = 994 5e-08
3ba6_A 994 Structure Of The Ca2e1p Phosphoenzyme Intermediate 6e-08
3tlm_A 992 Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp 9e-08
3j08_A 645 High Resolution Helical Reconstruction Of The Bacte 4e-07
3j09_A 723 High Resolution Helical Reconstruction Of The Bacte 5e-07
2hc8_A113 Structure Of The A. Fulgidus Copa A-Domain Length = 1e-06
3rfu_A 736 Crystal Structure Of A Copper-Transporting Pib-Type 2e-05
1mhs_A 920 Model Of Neurospora Crassa Proton Atpase Length = 9 2e-05
2kij_A124 Solution Structure Of The Actuator Domain Of The Co 3e-04
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992 Back     alignment and structure 
Iteration: 1

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 12  GVGLATEGWPEGMYDGLGXXXXXXXXXXXTAISDYKQSLQFRDLDREKKKIFIQ---VTR 68
           G+  ATE  P+   D L            T    Y Q  +   +    K +  Q   V R
Sbjct: 85  GIQAATEEEPQN--DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIR 142
Query: 69  DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMY----ICD 124
           +G++  ++  ++VVGD+V +  GD++PAD   IS     +D SSL+GESEP        +
Sbjct: 143 NGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTN 202
Query: 125 ENPF-----LLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 164
           ENP          T   +G+ + +V   G RT  G++  TL  G+
Sbjct: 203 ENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIA-TLASGL 246
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998 Back     alignment and structure
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028 Back     alignment and structure
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump Length = 885 Back     alignment and structure
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034 Back     alignment and structure
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995 Back     alignment and structure
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994 Back     alignment and structure
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994 Back     alignment and structure
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992 Back     alignment and structure
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 645 Back     alignment and structure
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 723 Back     alignment and structure
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain Length = 113 Back     alignment and structure
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase Length = 736 Back     alignment and structure
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase Length = 920 Back     alignment and structure
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper- Transporting Atpase Atp7a Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 1e-27
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 1e-27
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 1e-25
3b8c_A885 ATPase 2, plasma membrane-type; P-type ATPase, pro 1e-04
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 1e-23
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 2e-22
3ar4_A995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 1e-04
3rfu_A 736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 1e-12
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 2e-12
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 1e-11
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 5e-11
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Back     alignment and structure
 Score =  110 bits (277), Expect = 1e-27
 Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 46/237 (19%)

Query: 10  LSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQ------SLQ-FRDLDREKKKI 62
             G+  ATE  P      LG++  +  VV+VT    Y Q       +  F+++  ++   
Sbjct: 119 AYGIQAATEDEPANDNLYLGVV--LSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQAL- 175

Query: 63  FIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEP--- 119
              V RDG++  ++   +V GD+V +  GD++PAD   IS +   +D SSL+GESEP   
Sbjct: 176 ---VIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTR 232

Query: 120 -MYICDENPF-----LLAGTKVQDGSVKMLVTTVGMRTEWGK---LMETLNEGM------ 164
                 ENP          T   +G+ + +V   G RT  G+   L   L  G       
Sbjct: 233 SPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIE 292

Query: 165 ---FDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVV 218
              F   +    + L V+F      F+ +L     +  + WL  ++   + + +A V
Sbjct: 293 IEHFIHIITGVAVFLGVSF------FILSL-----ILGYSWLEAVIF-LIGIIVANV 337
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736 Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Length = 113 Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723 Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645 Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
3rfu_A 736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 100.0
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 100.0
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 100.0
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 100.0
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 100.0
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 100.0
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 100.0
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 100.0
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 99.97
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 99.97
2jmz_A186 Hypothetical protein MJ0781; unknown function; NMR 86.37
2lcj_A185 PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi 80.69
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Back     alignment and structure
Probab=100.00  E-value=7.4e-39  Score=311.01  Aligned_cols=233  Identities=20%  Similarity=0.253  Sum_probs=183.3

Q ss_pred             CchhhHHHHHHHHhhhcC----------CCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEE-
Q 025861            1 MKVSANVIYLSGVGLATE----------GWPEGMYDGLGII-LSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR-   68 (247)
Q Consensus         1 lgl~~a~~~s~~~~~~~~----------~~~~~~~~~~~i~-~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r-   68 (247)
                      +|+.+|+++|++..+...          +....|||+++++ ++++++.+++...+.++++.+++|.++.++ +++++| 
T Consensus       154 l~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~-~a~vv~~  232 (736)
T 3rfu_A          154 MGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPE-SAHRIKE  232 (736)
T ss_dssp             HHHHHHHHHHHHHHHCGGGSCSSSSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCC-EEEEEET
T ss_pred             HHHHHHHHHHHHHHhcccccccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEec
Confidence            467788888887665311          1234688887555 668888999999999999999999998885 777777 


Q ss_pred             CCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEec
Q 025861           69 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVG  148 (247)
Q Consensus        69 ~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g  148 (247)
                      ||++++|++++|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|++++. +|+||.|.+|.++++|+++|
T Consensus       233 dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VDES~LTGES~Pv~K~~gd~-v~~Gt~~~~G~~~~~v~~~G  310 (736)
T 3rfu_A          233 DGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPVAKEASAK-VIGATINQTGSFVMKALHVG  310 (736)
T ss_dssp             TEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSCE-EEECSSSTTCSSCEEECTTCE-ECTTCEEESCCCCEEECCCS
T ss_pred             CCEEEEEEHhhCCCCCEEEECCCCcccccEEEEECce-EeeecccCCccccEEeccCCc-CCCceEeccceEEEEEEEec
Confidence            9999999999999999999999999999999999998 799999999999999999998 99999999999999999999


Q ss_pred             cccccchhhhhhccccccchh-------HHHHHHHHHHHHHHHHHHHhHhhccCCccHHHH-HHHHhHhhhhhhheeeec
Q 025861          149 MRTEWGKLMETLNEGMFDSWL-------FVGILVLTVAFQIIIVEFLGALASTVPLSWHLW-LLCILIGAVSMPIAVVIK  220 (247)
Q Consensus       149 ~~T~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~il~ia~P~Al~l~  220 (247)
                      .+|.++||.+++++++.+|++       +..+++.+++++.++.++++++.. ....|..+ ..++.+++++|||||.++
T Consensus       311 ~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~-~~~~~~~~l~~ai~vlviacPcaL~la  389 (736)
T 3rfu_A          311 SDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLG-PQPALSYGLIAAVSVLIIACPCALGLA  389 (736)
T ss_dssp             TTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSSSTTHHHHHHHHHHHHHCCSTHHHH
T ss_pred             hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchHHHHHHHHHHhHHHhhhhHHHHH
Confidence            999999999999988777653       444555444444444444443332 22223334 444568999999999999


Q ss_pred             ccccCCCCcccc-ccccee
Q 025861          221 CIPVKKSEPKLQ-HHDGYE  238 (247)
Q Consensus       221 ~~P~a~~~~~~~-~~~~~~  238 (247)
                       +|++...+... ..+++.
T Consensus       390 -~p~a~~~~~~~~a~~gil  407 (736)
T 3rfu_A          390 -TPMSIMVGVGKGAQSGVL  407 (736)
T ss_dssp             -HHHHHHHHHHHHHHTTEE
T ss_pred             -HHHHHHHHHHHHhhccee
Confidence             99875544333 334443
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Back     alignment and structure
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A Back     alignment and structure
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1wpga1115 b.82.7.1 (A:125-239) Calcium ATPase, transduction 3e-15
d1wpga4472 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP 3e-08
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 67.4 bits (164), Expect = 3e-15
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 16/112 (14%)

Query: 65  QVTRDGQR--QKVSIYDLVVGDIVHLSIGDQVPADGIFISGY--SLLIDESSLSGESEPM 120
           +V R  ++  Q++   D+V GDIV +++GD+VPAD   +S    +L +D+S L+GES  +
Sbjct: 4   KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 63

Query: 121 YICDE------------NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL 160
               E               L +GT +  G    +V T G+ TE GK+ + +
Sbjct: 64  IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 115
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1wpga1115 Calcium ATPase, transduction domain A {Rabbit (Ory 99.95
d1wpga4 472 Calcium ATPase, transmembrane domain M {Rabbit (Or 96.23
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.95  E-value=3.7e-29  Score=187.93  Aligned_cols=98  Identities=36%  Similarity=0.556  Sum_probs=89.2

Q ss_pred             eEEEEECCeE--EEEeCCCcccCcEEEEcCCCeeeceEEEEeeC--ceEEeccccCCCCcceeecCC------------C
Q 025861           63 FIQVTRDGQR--QKVSIYDLVVGDIVHLSIGDQVPADGIFISGY--SLLIDESSLSGESEPMYICDE------------N  126 (247)
Q Consensus        63 ~~~v~r~g~~--~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~--~~~vdes~lTGEs~pv~k~~~------------~  126 (247)
                      .++|+|+|++  ++|+++||+|||+|.+++||++||||++++++  ++.+|||+|||||.|+.|.++            .
T Consensus         2 ~~kV~R~g~~~v~~I~~~eLv~GDiv~l~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~~~~~~~~~~   81 (115)
T d1wpga1           2 MGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKK   81 (115)
T ss_dssp             EEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCCTTCCGGGCT
T ss_pred             ceEEEECCCceEEEEeHHHCCCCCEEEECCCCEEeeceEEEEeeccceEEEEeecccceEEEEeeccccccccccccccc
Confidence            5789999985  78999999999999999999999999998754  468999999999999999752            4


Q ss_pred             CEEEecceEeeceEEEEEEEeccccccchhhhhh
Q 025861          127 PFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL  160 (247)
Q Consensus       127 ~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~  160 (247)
                      |++|+||.+.+|+++++|++||.+|.+|||.+++
T Consensus        82 n~lf~GT~V~~G~~~~~V~~tG~~T~~G~i~~~i  115 (115)
T d1wpga1          82 NMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM  115 (115)
T ss_dssp             TEECTTCEEEECEEEEEEEECGGGSHHHHHHHHH
T ss_pred             ceEEeccEEEeeeEEEEEEEEccccHHHHHHHhC
Confidence            6899999999999999999999999999998764
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure