Citrus Sinensis ID: 025863

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQIIHL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEccEEEEcccEEEEEEEEEcccccEEEEEcccccccccccccccEEEccccccccccEEEEcccEEEEEEEcccccHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEccHccccccccccHHHHHcccccccccHHHHHHHHHHHHccEEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEcEcccccccEEEccHHHHHHEHcccEEHHEEEcc
Coil and Loop (DISEMBL)
MKSAVAITSKIHLNlnlrrnhlysplsrsiflgkakpvfqspplirthssnpnpnpimassskpeqarappalplptppvakfkvglcqlsvtaDKERNIAHARRAIEEAAEKGAKLillpeiwnspyshdsfpvyaedidaggdaspstAMLSEVARLLKITIVggsipersgdrlyntccvfgsdgklIAKHRKihlfdidipgkitfiesksltagetptivDTGLMFLLFYNGLISFSQIIHL
Flexible Loop (DISEMBL)
MKSAVAITSkihlnlnlrrNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVggsipersgdrlYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLIsfsqiihl
Low Complexity Region (SEG)
MKSAVAITSKIhlnlnlrrnhlYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARappalplptppVAKFKVGLCQLSVTADKErniaharraieeaaekgaklillPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQIIHL
Disordered region (IsUnstruct)
*****AITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPV*****************************************VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA********AMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQII**
Disordered Region (DISOPRED)
*********KIHLNLNLRRNHL***********************************************************KFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQIIHL
Disordered Region (DISEMBL)
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPI*************PALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQIIHL
Disordered Region (DISPRO)
*KSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHS**************PEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQIIHL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVxxxxxxxxxxxxxxxxxxxxxGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQIIHL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q6IR61	276	Omega-amidase NIT2-A OS=X	N/A	no	0.578	0.518	0.513	3e-36
Q9NQR4	276	Omega-amidase NIT2 OS=Hom	yes	no	0.566	0.507	0.524	6e-36
Q497B0	276	Omega-amidase NIT2 OS=Rat	yes	no	0.578	0.518	0.513	7e-36
Q2T9R6	276	Omega-amidase NIT2 OS=Bos	yes	no	0.578	0.518	0.506	7e-36
Q5R4L6	275	Omega-amidase NIT2 OS=Pon	yes	no	0.578	0.52	0.513	1e-35
Q6INI7	276	Omega-amidase NIT2-B OS=X	N/A	no	0.578	0.518	0.5	1e-35
Q9JHW2	276	Omega-amidase NIT2 OS=Mus	yes	no	0.578	0.518	0.506	2e-35
Q28IE5	276	Omega-amidase NIT2 OS=Xen	yes	no	0.578	0.518	0.5	3e-35
Q10166	322	UPF0012 hydrolase C26A3.1	yes	no	0.574	0.440	0.531	4e-35
Q4VBV9	277	Omega-amidase NIT2 OS=Dan	yes	no	0.578	0.516	0.486	2e-34

>sp|Q6IR61|NIT2A_XENLA Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 102/148 (68%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +AKFK+ L Q  V+  K  N+  A + I+EAA+KGA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MAKFKLSLVQFLVSPVKSDNLNRACKLIKEAAQKGAQIVALPECFNSPYGTTYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST +LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTELLSQVAKECGIYLIGGSIPEEDCGKLYNTCAVFGPDGTLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKI F ES++L+ G++ ++ DT
Sbjct: 116 FDIDVPGKIRFQESETLSPGDSFSVFDT 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 3

>sp|Q9NQR4|NIT2_HUMAN Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 98/145 (67%), Gaps = 5/145 (3%)

Query: 83  FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           F++ L QL +++ K  N+  A   I EAA +GAK++ LPE +NSPY    FP YAE I  
Sbjct: 4   FRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKI-- 61

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
                 ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDI
Sbjct: 62  ---PGESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDI 118

Query: 203 DIPGKITFIESKSLTAGETPTIVDT 227
           D+PGKITF ESK+L+ G++ +  DT
Sbjct: 119 DVPGKITFQESKTLSPGDSFSTFDT 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively. Overexpression decreases the colony-forming capacity of cultured cells by arresting cells in the G2 phase of the cell cycle.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q497B0|NIT2_RAT Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1

 Score =  150 bits (380), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 100/148 (67%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           ++ F++ L QL V++ K  NI  A   + EAA++GA ++ LPE +NSPY  + FP YAE 
Sbjct: 1   MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKITF ESK+L+ G++ +  DT
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDT 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q2T9R6|NIT2_BOVIN Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1

 Score =  150 bits (379), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 104/148 (70%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +A F++ L QL V++ K  N+  A   I EA+++GA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HL
Sbjct: 61  IP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKITF ES++L+ G++ ++ DT
Sbjct: 116 FDIDVPGKITFQESETLSPGDSFSLFDT 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5R4L6|NIT2_PONAB Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 98/148 (66%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +A F++ L QL +++    N+  A   I EAA +GAK++ LPE +NSPY    FP YAE 
Sbjct: 1   MASFRLALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHL
Sbjct: 61  I-----PGESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKITF ESK+L+ G++    DT
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFCTFDT 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 101/148 (68%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +AKF++ L Q  V+  K  N+  A + I+EAA+KGA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MAKFRLSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST +LS+VA+   I ++GGSIPE    + YNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTELLSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKI F ES++L+ G++ ++ DT
Sbjct: 116 FDIDVPGKIRFQESETLSPGDSFSVFDT 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9JHW2|NIT2_MOUSE Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           ++ F++ L QL V++ K  N+  A   + EAA++GA ++ LPE +NSPY    FP YAE 
Sbjct: 1   MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKITF ESK+L+ G++ +  DT
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDT 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 101/148 (68%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +AKF++ L Q  V+  K  N+  A + I+EAA+KGA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MAKFRLSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKI F ES++L+ G++ ++ +T
Sbjct: 116 FDIDVPGKIRFQESETLSPGDSFSVFET 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q10166|YAUB_SCHPO UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26A3.11 PE=3 SV=1

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 99/145 (68%), Gaps = 3/145 (2%)

Query: 83  FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           F++GL QL+ T DK  N+  AR  + EAA+ G+ +I+LPEI+NSPY    F  YAE I+ 
Sbjct: 44  FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE- 102

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
             ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDI
Sbjct: 103 --ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDI 160

Query: 203 DIPGKITFIESKSLTAGETPTIVDT 227
           DIPG ++F ES SL+ G+  T+VDT
Sbjct: 161 DIPGGVSFRESDSLSPGDAMTMVDT 185

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|Q4VBV9|NIT2_DANRE Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 101/148 (68%), Gaps = 5/148 (3%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           ++KF++ + QL V+  K  N+  A+  ++EAA +GAK+++LPE +NSPY    F  YAE 
Sbjct: 1   MSKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGTGFFKEYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST +LSE A+   I +VGGSIPE  G +LYNTC VFG DG L+  HRKIHL
Sbjct: 61  I-----PGESTQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGTLLVTHRKIHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKI F ES++L+ G++ ++ +T
Sbjct: 116 FDIDVPGKIRFQESETLSPGKSLSMFET 143

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
343887307	418	carbon-nitrogen hydrolase family protein	0.919	0.543	0.911	1e-116
224092113	370	predicted protein [Populus trichocarpa]	0.890	0.594	0.719	5e-80
357465811	357	Omega-amidase NIT2 [Medicago truncatula]	0.813	0.563	0.751	1e-75
7573371	318	putative protein [Arabidopsis thaliana]	0.692	0.537	0.842	6e-75
296081697	307	unnamed protein product [Vitis vinifera]	0.688	0.553	0.852	6e-75
225429638	364	PREDICTED: omega-amidase NIT2-like [Viti	0.724	0.491	0.788	1e-74
226531330	356	uncharacterized protein LOC100280276 [Ze	0.732	0.508	0.735	1e-74
414865106	308	TPA: hypothetical protein ZEAMMB73_29600	0.732	0.587	0.735	2e-74
195607250	311	hypothetical protein [Zea mays]	0.700	0.556	0.748	8e-74
223973447	356	unknown [Zea mays]	0.732	0.508	0.735	2e-73

>gi|343887307|dbj|BAK61853.1| carbon-nitrogen hydrolase family protein [Citrus unshiu]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/249 (91%), Positives = 227/249 (91%), Gaps = 22/249 (8%)

Query: 1   MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS 60
           MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS
Sbjct: 1   MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS 60

Query: 61  SSKPEQARAPPALPLPTPPVAK----------------------FKVGLCQLSVTADKER 98
           SSKPEQARAPPALPLPTPPVAK                      FKVGLCQLSVTADKER
Sbjct: 61  SSKPEQARAPPALPLPTPPVAKAISHFAYFLNLDDCYLCSVVALFKVGLCQLSVTADKER 120

Query: 99  NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158
           NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR
Sbjct: 121 NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 180

Query: 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 218
           LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA
Sbjct: 181 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 240

Query: 219 GETPTIVDT 227
           GETPTIVDT
Sbjct: 241 GETPTIVDT 249

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092113|ref|XP_002309478.1| predicted protein [Populus trichocarpa] gi|222855454|gb|EEE93001.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 172/239 (71%), Positives = 191/239 (79%), Gaps = 19/239 (7%)

Query: 1   MKSAVAITSKI----HLNLNLRRNHLYSPLSR---SIFLGKAKPVFQSPPLIRTHSSNPN 53
           MKSA++ T+ +    +L+L L  NH  SPLSR   S+F  K+   F  P L+  ++S  N
Sbjct: 1   MKSAISSTTTLLSSKNLSLKLHLNH--SPLSRLPSSLFRSKSNTHF--PSLLPRNNSTHN 56

Query: 54  P-----NPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIE 108
                  PIMASS  PEQARAPPAL     PV  FK+GLCQLSVTADKERNIAHAR+AIE
Sbjct: 57  QKSQIHTPIMASSFMPEQARAPPAL---PLPVPPFKIGLCQLSVTADKERNIAHARKAIE 113

Query: 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168
           EAA KGAKL++LPEIWNSPYS+D FPVYAEDIDAGG+ASPSTAMLSE A LLK+TIVGGS
Sbjct: 114 EAAAKGAKLVMLPEIWNSPYSNDCFPVYAEDIDAGGEASPSTAMLSEAAGLLKVTIVGGS 173

Query: 169 IPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
           IPERSGDRLYNTCCVF SDGKL AKHRKIHLFDIDIPGKITFIESK+LTAGETPTIVDT
Sbjct: 174 IPERSGDRLYNTCCVFDSDGKLKAKHRKIHLFDIDIPGKITFIESKTLTAGETPTIVDT 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465811|ref|XP_003603190.1| Omega-amidase NIT2 [Medicago truncatula] gi|355492238|gb|AES73441.1| Omega-amidase NIT2 [Medicago truncatula]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/209 (75%), Positives = 179/209 (85%), Gaps = 8/209 (3%)

Query: 20  NHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSS-KPEQARAPPALPLPTP 78
           NH  + +S + FL   K +F      + HSS   P+PIMA+SS   E AR+PPA+PLPTP
Sbjct: 19  NHTRNRISNNPFLFSNKTLF----FRQIHSS---PSPIMAASSINSELARSPPAIPLPTP 71

Query: 79  PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAE 138
           P+  FK+GLCQLSVT+DK++NIAHAR AI++AA KGAKLILLPEIWNSPYS+DSFPVYAE
Sbjct: 72  PLTNFKIGLCQLSVTSDKDKNIAHARTAIQDAAAKGAKLILLPEIWNSPYSNDSFPVYAE 131

Query: 139 DIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIH 198
           DIDAGGDASPSTAMLSE++ LLKITIVGGSIPERSGDRLYNTCCVFG+DGKL AKHRKIH
Sbjct: 132 DIDAGGDASPSTAMLSELSSLLKITIVGGSIPERSGDRLYNTCCVFGTDGKLKAKHRKIH 191

Query: 199 LFDIDIPGKITFIESKSLTAGETPTIVDT 227
           LFDIDIPGKITFIES +LTAG+TPTIVDT
Sbjct: 192 LFDIDIPGKITFIESLTLTAGDTPTIVDT 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7573371|emb|CAB87677.1| putative protein [Arabidopsis thaliana]

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/171 (84%), Positives = 160/171 (93%)

Query: 58  MASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKL 117
           MASS  PEQAR P ALPLP PP+ KF +GLCQLSVT+DK+RNI+HA++AIEEAA KGAKL
Sbjct: 1   MASSFNPEQARVPSALPLPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKL 60

Query: 118 ILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRL 177
           +LLPEIWNSPYS+DSFPVYAE+IDAGGDASPSTAMLSEV++ LKITI+GGSIPER GDRL
Sbjct: 61  VLLPEIWNSPYSNDSFPVYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRL 120

Query: 178 YNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTG 228
           YNTCCVFGSDG+L AKHRKIHLFDIDIPGKITF+ESK+LTAGETPTIVDTG
Sbjct: 121 YNTCCVFGSDGELKAKHRKIHLFDIDIPGKITFMESKTLTAGETPTIVDTG 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081697|emb|CBI20702.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 145/170 (85%), Positives = 160/170 (94%)

Query: 58  MASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKL 117
           M+SS KPEQAR PPA+P PTPP++KFK+GLCQLSVTADKERNIAHAR+AIEEA EKGA+L
Sbjct: 1   MSSSFKPEQARVPPAIPPPTPPLSKFKIGLCQLSVTADKERNIAHARKAIEEAVEKGAQL 60

Query: 118 ILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRL 177
           +LLPEIWNSPYS+DSFPVYAEDIDAG DASPSTAMLSEV+  LKITIVGGSIPER GD+L
Sbjct: 61  VLLPEIWNSPYSNDSFPVYAEDIDAGSDASPSTAMLSEVSHALKITIVGGSIPERCGDQL 120

Query: 178 YNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
           YNTCCVFGSDGKL AKHRKIHLFDI+IPGKITF+ESK+LTAG +PTIVDT
Sbjct: 121 YNTCCVFGSDGKLKAKHRKIHLFDINIPGKITFMESKTLTAGGSPTIVDT 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429638|ref|XP_002279687.1| PREDICTED: omega-amidase NIT2-like [Vitis vinifera]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/189 (78%), Positives = 166/189 (87%), Gaps = 10/189 (5%)

Query: 49  SSNPNP----------NPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKER 98
           +S PNP          +  M+SS KPEQAR PPA+P PTPP++KFK+GLCQLSVTADKER
Sbjct: 39  TSTPNPFHTQLRTAKISASMSSSFKPEQARVPPAIPPPTPPLSKFKIGLCQLSVTADKER 98

Query: 99  NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158
           NIAHAR+AIEEA EKGA+L+LLPEIWNSPYS+DSFPVYAEDIDAG DASPSTAMLSEV+ 
Sbjct: 99  NIAHARKAIEEAVEKGAQLVLLPEIWNSPYSNDSFPVYAEDIDAGSDASPSTAMLSEVSH 158

Query: 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 218
            LKITIVGGSIPER GD+LYNTCCVFGSDGKL AKHRKIHLFDI+IPGKITF+ESK+LTA
Sbjct: 159 ALKITIVGGSIPERCGDQLYNTCCVFGSDGKLKAKHRKIHLFDINIPGKITFMESKTLTA 218

Query: 219 GETPTIVDT 227
           G +PTIVDT
Sbjct: 219 GGSPTIVDT 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226531330|ref|NP_001146676.1| uncharacterized protein LOC100280276 [Zea mays] gi|219888265|gb|ACL54507.1| unknown [Zea mays] gi|414865104|tpg|DAA43661.1| TPA: hypothetical protein ZEAMMB73_296008 [Zea mays] gi|414865105|tpg|DAA43662.1| TPA: hypothetical protein ZEAMMB73_296008 [Zea mays]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 159/185 (85%), Gaps = 4/185 (2%)

Query: 43  PLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAH 102
           PL R  +    PNP    S +PE+AR+PPAL LPTPP++KFKV LCQLSVTADK RNIAH
Sbjct: 39  PLHRIAAMASAPNP----SFRPEEARSPPALELPTPPLSKFKVALCQLSVTADKNRNIAH 94

Query: 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162
           AR AIE+AA +GAKL+LLPEIWN PYS+DSFP YAEDI+AGGDA+PS +M+SEVAR+L++
Sbjct: 95  ARAAIEKAASEGAKLVLLPEIWNGPYSNDSFPEYAEDIEAGGDAAPSFSMMSEVARILQV 154

Query: 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP 222
           T+VGGSI ERSG+ LYNTCC+FGSDGKL  KHRKIHLFDIDIPGKITF ESK+LTAG+ P
Sbjct: 155 TLVGGSIAERSGNNLYNTCCIFGSDGKLKGKHRKIHLFDIDIPGKITFKESKTLTAGQNP 214

Query: 223 TIVDT 227
           T+VDT
Sbjct: 215 TVVDT 219

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414865106|tpg|DAA43663.1| TPA: hypothetical protein ZEAMMB73_296008 [Zea mays]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 159/185 (85%), Gaps = 4/185 (2%)

Query: 43  PLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAH 102
           PL R  +    PNP    S +PE+AR+PPAL LPTPP++KFKV LCQLSVTADK RNIAH
Sbjct: 39  PLHRIAAMASAPNP----SFRPEEARSPPALELPTPPLSKFKVALCQLSVTADKNRNIAH 94

Query: 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162
           AR AIE+AA +GAKL+LLPEIWN PYS+DSFP YAEDI+AGGDA+PS +M+SEVAR+L++
Sbjct: 95  ARAAIEKAASEGAKLVLLPEIWNGPYSNDSFPEYAEDIEAGGDAAPSFSMMSEVARILQV 154

Query: 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP 222
           T+VGGSI ERSG+ LYNTCC+FGSDGKL  KHRKIHLFDIDIPGKITF ESK+LTAG+ P
Sbjct: 155 TLVGGSIAERSGNNLYNTCCIFGSDGKLKGKHRKIHLFDIDIPGKITFKESKTLTAGQNP 214

Query: 223 TIVDT 227
           T+VDT
Sbjct: 215 TVVDT 219

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195607250|gb|ACG25455.1| hypothetical protein [Zea mays]

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 156/179 (87%), Gaps = 6/179 (3%)

Query: 49  SSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIE 108
           +S PNP      S +PE+AR+PPAL LPTPP++KFKV LCQLSVTADK RNIAHAR AIE
Sbjct: 2   ASAPNP------SFRPEEARSPPALELPTPPLSKFKVALCQLSVTADKNRNIAHARAAIE 55

Query: 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168
           +AA +GAKL+LLPEIWN PYS+DSFP YAEDI+AGGDA+PS +M+SEVAR L++T+VGGS
Sbjct: 56  KAASEGAKLVLLPEIWNGPYSNDSFPEYAEDIEAGGDAAPSFSMMSEVARSLQVTLVGGS 115

Query: 169 IPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
           I ERSG+ LYNTCC+FGSDGKL  KHRKIHLFDIDIPGKITF ESK+LTAG+ PT+VDT
Sbjct: 116 IAERSGNNLYNTCCIFGSDGKLKGKHRKIHLFDIDIPGKITFKESKTLTAGQNPTVVDT 174

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223973447|gb|ACN30911.1| unknown [Zea mays]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 157/185 (84%), Gaps = 4/185 (2%)

Query: 43  PLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAH 102
           PL R  +    PN    SS +PE+AR+PPAL LP PP++KFKV LCQLSVTADK RNIAH
Sbjct: 39  PLRRVTAMASAPN----SSFRPEEARSPPALELPIPPLSKFKVALCQLSVTADKSRNIAH 94

Query: 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162
           AR AIE+AA  GAKL++LPEIWN PYS+DSFP YAEDI+AGGDA+PS +MLSEVAR L+I
Sbjct: 95  ARAAIEKAASDGAKLVVLPEIWNGPYSNDSFPEYAEDIEAGGDAAPSFSMLSEVARSLQI 154

Query: 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP 222
           T+VGGSI ERSG+ LYNTCCVFGSDG+L  KHRKIHLFDIDIPGKITF ESK+LTAG++P
Sbjct: 155 TLVGGSIAERSGNNLYNTCCVFGSDGQLKGKHRKIHLFDIDIPGKITFKESKTLTAGQSP 214

Query: 223 TIVDT 227
           T+VDT
Sbjct: 215 TVVDT 219

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2143039	369	AT5G12040 [Arabidopsis thalian	0.825	0.552	0.600	1.9e-58
UNIPROTKB|Q2T9R6	276	NIT2 "Omega-amidase NIT2" [Bos	0.578	0.518	0.452	2.4e-28
RGD|1310494	276	Nit2 "nitrilase family, member	0.578	0.518	0.459	3.9e-28
UNIPROTKB|F1SKY2	283	NIT2 "Uncharacterized protein"	0.578	0.505	0.459	5e-28
UNIPROTKB|F1MJ59	276	NIT2 "Omega-amidase NIT2" [Bos	0.578	0.518	0.452	6.4e-28
UNIPROTKB|F1PTD1	283	NIT2 "Uncharacterized protein"	0.578	0.505	0.459	6.4e-28
UNIPROTKB|Q9NQR4	276	NIT2 "Omega-amidase NIT2" [Hom	0.578	0.518	0.452	6.4e-28
MGI|MGI:1261838	276	Nit2 "nitrilase family, member	0.578	0.518	0.459	6.4e-28
UNIPROTKB|H7C579	266	NIT2 "Omega-amidase NIT2" [Hom	0.566	0.526	0.462	8.2e-28
POMBASE|SPAC26A3.11	322	SPAC26A3.11 "amidohydrolase" [	0.574	0.440	0.468	4.5e-27

TAIR|locus:2143039 AT5G12040 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 128/213 (60%), Positives = 147/213 (69%)

Query:    24 SPLSRSI-----FLGKAKPVFQSPPLIRTHSSNPNP----NPIMASSSKPEQARXXXXXX 74
             +PLSR I     FL K  P   +   ++  SS+ +     +  MASS  PEQAR      
Sbjct:    20 NPLSRFISLKSNFLPKLSPRSITSHTLKLPSSSTSALRSISSSMASSFNPEQARVPSALP 79

Query:    75 XXXXXVAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFP 134
                  + KF +GLCQLSVT+DK+                       PEIWNSPYS+DSFP
Sbjct:    80 LPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFP 139

Query:   135 VYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194
             VYAE+IDAGGDASPSTAMLSEV++ LKITI+GGSIPER GDRLYNTCCVFGSDG+L AKH
Sbjct:   140 VYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCVFGSDGELKAKH 199

Query:   195 RKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
             RKIHLFDIDIPGKITF+ESK+LTAGETPTIVDT
Sbjct:   200 RKIHLFDIDIPGKITFMESKTLTAGETPTIVDT 232

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q2T9R6 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 67/148 (45%), Positives = 89/148 (60%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HL
Sbjct:    61 IP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
             FDID+PGKITF ES++L+ G++ ++ DT
Sbjct:   116 FDIDVPGKITFQESETLSPGDSFSLFDT 143

GO:0005737 "cytoplasm" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

RGD|1310494 Nit2 "nitrilase family, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 68/148 (45%), Positives = 88/148 (59%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             ++ F++ L QL V++ K                        PE +NSPY  + FP YAE 
Sbjct:     1 MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct:    61 IP--GE---STKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
             FDID+PGKITF ESK+L+ G++ +  DT
Sbjct:   116 FDIDVPGKITFQESKTLSPGDSFSTFDT 143

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

UNIPROTKB|F1SKY2 NIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 68/148 (45%), Positives = 88/148 (59%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     8 MATFRLALIQLHVSSVKSDNLTRACGFIQEAAKQGAKIISLPECFNSPYGTKYFPEYAEK 67

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   GD   ST  LSEVA+   + ++GGSIPE    +LYNTC VFG DG L+AK+RK+HL
Sbjct:    68 IP--GD---STQKLSEVAKECGVYVIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKLHL 122

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
             FDID+PGKITF ESK+L+ G++ +  DT
Sbjct:   123 FDIDVPGKITFQESKTLSPGDSFSTFDT 150

GO:0005813 "centrosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|F1MJ59 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 67/148 (45%), Positives = 88/148 (59%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HL
Sbjct:    61 IP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
             FDID+PGKITF ES++L+ G++ +  DT
Sbjct:   116 FDIDVPGKITFQESETLSPGDSFSSFDT 143

GO:0005813 "centrosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|F1PTD1 NIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 68/148 (45%), Positives = 87/148 (58%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +A F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     8 MATFRLALIQLQVSSIKSENLARACGLVREAARQGAKVVSLPECFNSPYGTKYFPEYAEK 67

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   + ++GGSIPE    +LYNTC VFG DG L+ K+RK+HL
Sbjct:    68 IP--GE---STQKLSEVAKECSVYLIGGSIPEEDAGKLYNTCAVFGPDGTLLVKYRKLHL 122

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
             FDIDIPGKITF ESK+LT G++ +  DT
Sbjct:   123 FDIDIPGKITFHESKTLTPGDSFSTFDT 150

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

UNIPROTKB|Q9NQR4 NIT2 "Omega-amidase NIT2" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 67/148 (45%), Positives = 87/148 (58%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             +  F++ L QL +++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHL
Sbjct:    61 IP--GE---STQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
             FDID+PGKITF ESK+L+ G++ +  DT
Sbjct:   116 FDIDVPGKITFQESKTLSPGDSFSTFDT 143

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

MGI|MGI:1261838 Nit2 "nitrilase family, member 2" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 68/148 (45%), Positives = 87/148 (58%)

Query:    80 VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
             ++ F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct:     1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60

Query:   140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
             I   G+   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct:    61 IP--GE---STQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115

Query:   200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
             FDID+PGKITF ESK+L+ G++ +  DT
Sbjct:   116 FDIDVPGKITFQESKTLSPGDSFSTFDT 143

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0050152 "omega-amidase activity" evidence=IEA

UNIPROTKB|H7C579 NIT2 "Omega-amidase NIT2" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 67/145 (46%), Positives = 86/145 (59%)

Query:    83 FKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAEDIDA 142
             F++ L QL +++ K                        PE +NSPY    FP YAE I  
Sbjct:    98 FRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIP- 156

Query:   143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
              G+   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDI
Sbjct:   157 -GE---STQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDI 212

Query:   203 DIPGKITFIESKSLTAGETPTIVDT 227
             D+PGKITF ESK+L+ G++ +  DT
Sbjct:   213 DVPGKITFQESKTLSPGDSFSTFDT 237

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

POMBASE|SPAC26A3.11 SPAC26A3.11 "amidohydrolase" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 68/145 (46%), Positives = 84/145 (57%)

Query:    83 FKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAEDIDA 142
             F++GL QL+ T DK                        PEI+NSPY    F  YAE I+ 
Sbjct:    44 FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE- 102

Query:   143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
               ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDI
Sbjct:   103 --ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDI 160

Query:   203 DIPGKITFIESKSLTAGETPTIVDT 227
             DIPG ++F ES SL+ G+  T+VDT
Sbjct:   161 DIPGGVSFRESDSLSPGDAMTMVDT 185

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VI1497	hypothetical protein (370 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIV.3012.1	aspartate transaminase (EC-2.6.1.1) (403 aa)						•			0.899
	gw1.VI.2755.1	aspartate transaminase (EC-2.6.1.1) (397 aa)						•			0.899
	gw1.I.2445.1	L-aspartate oxidase (601 aa)						•			0.899
	gw1.97.87.1	hypothetical protein (637 aa)						•			0.899
	grail3.0013044701	aspartate transaminase (EC-2.6.1.1) (466 aa)						•			0.899
	eugene3.06620001	hypothetical protein (2230 aa)						•			0.899
	eugene3.00150904	glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (412 aa)						•			0.899
	eugene3.00130573	glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (411 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_XVIII0241	SubName- Full=Putative uncharacterized protein; (407 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_XVIII0158	aspartate transaminase (EC-2.6.1.1) (466 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
cd07572	265	cd07572, nit, Nit1, Nit 2, and related proteins, a	1e-70
cd07583	253	cd07583, nitrilase_5, Uncharacterized subgroup of	1e-39
cd07197	253	cd07197, nitrilase, Nitrilase superfamily, includi	1e-36
pfam00795	172	pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	6e-33
COG0388	274	COG0388, COG0388, Predicted amidohydrolase [Genera	1e-31
cd07573	284	cd07573, CPA, N-carbamoylputrescine amidohydrolase	1e-27
cd07581	255	cd07581, nitrilase_3, Uncharacterized subgroup of	6e-26
cd07580	268	cd07580, nitrilase_2, Uncharacterized subgroup of	3e-23
PLN02798	286	PLN02798, PLN02798, nitrilase	2e-20
cd07576	254	cd07576, R-amidase_like, Pseudomonas sp	1e-19
cd07584	258	cd07584, nitrilase_6, Uncharacterized subgroup of	1e-18
cd07585	261	cd07585, nitrilase_7, Uncharacterized subgroup of	2e-18
cd07564	297	cd07564, nitrilases_CHs, Nitrilases, cyanide hydra	2e-18
TIGR03381	279	TIGR03381, agmatine_aguB, N-carbamoylputrescine am	1e-17
cd07577	259	cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642	1e-16
cd07574	280	cd07574, nitrilase_Rim1_like, Uncharacterized subg	3e-15
cd07568	287	cd07568, ML_beta-AS_like, mammalian-like beta-alan	4e-15
cd07586	269	cd07586, nitrilase_8, Uncharacterized subgroup of	3e-12
PLN02747	296	PLN02747, PLN02747, N-carbamolyputrescine amidase	4e-12
TIGR04048	301	TIGR04048, nitrile_sll0784, putative nitrilase, sl	2e-11
cd07570	261	cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe	5e-11
cd07587	363	cd07587, ML_beta-AS, mammalian-like beta-alanine s	5e-11
PLN00202	405	PLN00202, PLN00202, beta-ureidopropionase	5e-10
PLN02504	346	PLN02504, PLN02504, nitrilase	8e-10
PRK13981	540	PRK13981, PRK13981, NAD synthetase; Provisional	1e-09
cd07579	279	cd07579, nitrilase_1_R2, Second nitrilase domain o	2e-09
cd07578	258	cd07578, nitrilase_1_R1, First nitrilase domain of	2e-09
cd07569	302	cd07569, DCase, N-carbamyl-D-amino acid amidohydro	2e-08
cd07567	299	cd07567, biotinidase_like, biotinidase and vanins	6e-08
cd07575	252	cd07575, Xc-1258_like, Xanthomonas campestris XC12	2e-06
cd07571	270	cd07571, ALP_N-acyl_transferase, Apolipoprotein N-	4e-06
PRK02628	679	PRK02628, nadE, NAD synthetase; Reviewed	9e-06
cd07566	295	cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t	2e-05
cd07582	294	cd07582, nitrilase_4, Uncharacterized subgroup of	2e-04
PRK00302	505	PRK00302, lnt, apolipoprotein N-acyltransferase; R	0.001
TIGR00546	391	TIGR00546, lnt, apolipoprotein N-acyltransferase	0.002

>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

 Score =  217 bits (555), Expect = 1e-70
 Identities = 70/148 (47%), Positives = 100/148 (67%), Gaps = 5/148 (3%)

Query: 84  KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAG 143
           +V L Q++ TADKE N+A A+  IEEAA +GAKL++LPE +N P   D+F +   + +  
Sbjct: 1   RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGD 60

Query: 144 GDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFD 201
           G   P+   LSE+A+   I +VGGSIPER     ++YNT  VF  DG+L+A++RKIHLFD
Sbjct: 61  G---PTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFD 117

Query: 202 IDIPGKITFIESKSLTAGETPTIVDTGL 229
           +D+PG I++ ES +LT G+   +VDT  
Sbjct: 118 VDVPGGISYRESDTLTPGDEVVVVDTPF 145

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265

>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  136 bits (346), Expect = 1e-39
 Identities = 58/149 (38%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           K+ L QL +   D E NI      IEEAA  GA LI+LPE+WN+ Y  D          A
Sbjct: 1   KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDD-----LYELA 55

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
             D   + + LSE+A+   + IV GS+ E+ G +LYNT  V   DG+LIA +RKIHLF  
Sbjct: 56  DEDGGETVSFLSELAKKHGVNIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLF-- 113

Query: 203 DIPGKITFI-ESKSLTAGETPTIVDTGLM 230
                   + E K LTAG+   + +    
Sbjct: 114 ------GLMGEDKYLTAGDELEVFELDGG 136

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 253

>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

 Score =  129 bits (326), Expect = 1e-36
 Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 23/155 (14%)

Query: 85  VGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF---PVYAEDI 140
           +   QL+    D E N+A A R I+EAAE+GA LI+LPE++ + YS +S       AE++
Sbjct: 1   IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEEL 60

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
           D      P+   L+E+A+ L I IV G I E+ GD+LYNT  V   DG++I K+RKIHLF
Sbjct: 61  D-----GPTLEALAELAKELGIYIVAG-IAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLF 114

Query: 201 DIDIPGKITFIESKSLTAGETPTIVDT-----GLM 230
           D        F E +  + G+   + DT     GL+
Sbjct: 115 D--------FGERRYFSPGDEFPVFDTPGGKIGLL 141

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy. Length = 253

>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase

 Score =  117 bits (295), Expect = 6e-33
 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 15/151 (9%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY--AEDI 140
           KV L QL     D E N+      IEEAA +GA L++LPE++   Y+H +      AE I
Sbjct: 1   KVALVQLPPSAFDLEANLQKLLELIEEAARQGADLVVLPELFIPGYAHGATEYLELAEAI 60

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
                   +   LS +AR   IT+V G IPE+ G  LYNT  +   DG+L+ K+RK HL 
Sbjct: 61  P-----GETLQFLSALARKNGITVVAG-IPEKDGGGLYNTLVLIDPDGELLGKYRKRHLV 114

Query: 201 DIDIPGKITFIESKSLTAGETPT-IVDTGLM 230
            +       ++E      G     + DT + 
Sbjct: 115 PV-----GEWVERPLFGPGGATFPVFDTPVG 140

This family contains hydrolases that break carbon-nitrogen bonds. The family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins. Length = 172

>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]

 Score =  116 bits (293), Expect = 1e-31
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI 140
             +V   Q++    D   N+A   R I EAA +GA L++ PE++ + Y  +      E  
Sbjct: 2   MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAA 61

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
                   +   L+ +A    + IVGG +PER    LYN   +   DG+++ K+RK+HLF
Sbjct: 62  AE--AGEETLEFLAALAEEGGVIIVGGPLPEREK--LYNNAALIDPDGEILGKYRKLHLF 117

Query: 201 DIDIPGKITFIESKSLTAGETPTIV 225
           D        + E +  T G+   +V
Sbjct: 118 D------AFYEERRFFTPGDEGVVV 136

Length = 274

>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

 Score =  106 bits (267), Expect = 1e-27
 Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 17/129 (13%)

Query: 83  FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY-----SHDSFPVYA 137
             V L Q++ + D E N+A A   + EAA +GA+++ L E++ +PY       D F   A
Sbjct: 1   VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFD-LA 59

Query: 138 EDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLY-NTCCVFGSDGKLIAKHRK 196
           E    G    P+TA    +A+ L + I   S+ E+ G+ LY N+  V  +DG L+  +RK
Sbjct: 60  EPPIPG----PTTARFQALAKELGVVIP-VSLFEKRGNGLYYNSAVVIDADGSLLGVYRK 114

Query: 197 IHLFDIDIP 205
           +H     IP
Sbjct: 115 MH-----IP 118

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer. Length = 284

>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score =  101 bits (254), Expect = 6e-26
 Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 14/146 (9%)

Query: 85  VGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY--AEDIDA 142
           V L Q + + DKE N+   RR + EAA  GA L++ PE   + +          AE +D 
Sbjct: 1   VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLD- 59

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFGSDGKLIAKHRKIHLFD 201
                P  + L+ +AR L IT+V G + E +GD R+YNT  V G DG++IA +RKIHL+D
Sbjct: 60  ----GPFVSALARLARELGITVVAG-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYD 114

Query: 202 IDIPGKITFIESKSLTAGETPTIVDT 227
                   F ES ++  G+    V  
Sbjct: 115 -----AFGFRESDTVAPGDELPPVVF 135

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 255

>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAED 139
           +V   Q      D + N+A +   I EAA+ GA L++LPE+ N+ Y   S D     AE+
Sbjct: 1   RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEE 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           +  G     ST   +E+A  L + IV G   ER GDRLYN+  + G DG +I  +RK HL
Sbjct: 61  VPDG----ASTRAWAELAAELGLYIVAG-FAERDGDRLYNSAVLVGPDG-VIGTYRKAHL 114

Query: 200 FDIDIPGKITFIESKSLTAG-ETPTIVDT 227
           ++          E      G     + DT
Sbjct: 115 WN---------EEKLLFEPGDLGLPVFDT 134

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 268

>gnl|CDD|215428 PLN02798, PLN02798, nitrilase

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 76  PTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV 135
                +  +V + Q++ T D   N A   R  +EAA  GAKL+ LPE ++     D   +
Sbjct: 4   AATAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESL 63

Query: 136 -YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD--RLYNTCCVFGSDGKLIA 192
             AE +D      P       +AR   + +  G   E+  D   LYNT  +    G++ +
Sbjct: 64  AIAEPLDG-----PIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRS 118

Query: 193 KHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
            +RKIHLFD+D+PG     ES     G+T   VD+
Sbjct: 119 SYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDS 153

Length = 286

>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 21/154 (13%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY-SHDSFPVYAEDID 141
           ++ L Q      D   N+A    A   AA  GA L++ PE++ + Y   D+    AE  D
Sbjct: 1   RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPAD 60

Query: 142 AGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFD 201
                 P+   L  +AR   I IV G  PER+G  +YN   +   DG ++A +RK HLF 
Sbjct: 61  G-----PALQALRAIARRHGIAIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG 114

Query: 202 IDIPGKITFIESKSLTAGETPTIVD-----TGLM 230
                     E  + T G+   +V+      GL+
Sbjct: 115 DS--------ERAAFTPGDRFPVVELRGLRVGLL 140

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer. Length = 254

>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 84  KVGLCQL-SVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-PVYAEDID 141
           KV L Q+ SV  D + N+  A    +EAA +GA LI  PE+  + Y  D   P   E  +
Sbjct: 1   KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSE 60

Query: 142 AGGDASPSTAMLSEVARLLKITIVGGSIPERSGD--RLYNTCCVFGSDGKLIAKHRKIHL 199
                 P+  + SE+A+ L + IV G   E+ G   ++YN+  V   +G+ +  +RKIHL
Sbjct: 61  PID--GPTVRLFSELAKELGVYIVCG-FVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHL 117

Query: 200 FDIDIPGKITFIESKSLTAGETP 222
           + ++   K  F E +     +TP
Sbjct: 118 WGLE---KQYFREGEQYPVFDTP 137

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 84  KVGLCQLSVTA-DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           ++ L Q      DK RN+A   R   +AA +GA+L+  PE+  + Y+H      A   +A
Sbjct: 1   RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVR----ALSREA 56

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDI 202
                PST  LS++AR   +TI+ G I E++GDR YNT  V   DG L+ ++RK+HLF  
Sbjct: 57  EVPDGPSTQALSDLARRYGLTILAGLI-EKAGDRPYNTYLVCLPDG-LVHRYRKLHLFR- 113

Query: 203 DIPGKITFIESKSLTAGETPTIVDTG 228
                    E   + AG+   +  T 
Sbjct: 114 --------REHPYIAAGDEYPVFATP 131

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 261

>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

 Score = 81.8 bits (203), Expect = 2e-18
 Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 17/128 (13%)

Query: 83  FKVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIW-----------NSPYSH 130
            KV   Q + V  D    +  A R IEEAA  GA+L++ PE +                 
Sbjct: 1   VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGR 60

Query: 131 DSFPVYAED-IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189
           + F  Y E+ ++  G   P    L+E AR   I +V G   ER G  LYNT  +   DG+
Sbjct: 61  ELFARYYENSVEVDG---PELERLAEAARENGIYVVLGVS-ERDGGTLYNTQLLIDPDGE 116

Query: 190 LIAKHRKI 197
           L+ KHRK+
Sbjct: 117 LLGKHRKL 124

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1. Length = 297

>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 9/122 (7%)

Query: 84  KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY----SHDSFPVYAED 139
            V   Q++ + D E NIA A R + EAA +GA++ILLPE++  PY      + +   A+ 
Sbjct: 2   TVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQP 61

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           +    +  P+      +A+ L + I   S  E++G+  YN+  +  +DG ++  +RK H+
Sbjct: 62  V----EGHPAIKRFQALAKELGVVIP-VSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHI 116

Query: 200 FD 201
            D
Sbjct: 117 PD 118

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one [Central intermediary metabolism, Polyamine biosynthesis]. Length = 279

>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAED 139
           KVG  Q +    + E+N+      I+      A LI+LPE++N+ Y   S +     AE 
Sbjct: 1   KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAES 57

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I  G    P+T  L E+AR     IV G +PER GD+ YN+  V G +G  I  +RK HL
Sbjct: 58  IPDG----PTTRFLQELARETGAYIVAG-LPERDGDKFYNSAVVVGPEG-YIGIYRKTHL 111

Query: 200 FD 201
           F 
Sbjct: 112 FY 113

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 259

>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 18/155 (11%)

Query: 83  FKVGLCQLSVT--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSP---YSHDSFPVYA 137
            +V   Q  +   A  E   A     + EAA  GA L++ PE +         ++     
Sbjct: 1   VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLD 60

Query: 138 EDIDAGGD-ASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRK 196
           E I A         A+ SE+AR   I I+ GS+P R   RLYN   +FG DG  I    K
Sbjct: 61  EAIRALAALTPDYVALFSELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGT-IGHQDK 119

Query: 197 IHLFDIDIPGKITFIESK--SLTAGETPTIVDTGL 229
           +H         +T  E +   ++ G+   + DT L
Sbjct: 120 LH---------MTPFEREEWGISGGDKLKVFDTDL 145

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 280

>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score = 72.5 bits (178), Expect = 4e-15
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 82  KFKVGLCQLSVTA--------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY--SHD 131
             +VGL Q S            KE  I      I EAAE GA+++ L EI+  PY  +  
Sbjct: 3   IVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQ 62

Query: 132 SFPVY--AEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189
               Y  AE+I  G    P+T   + +A+   + ++     +  G  LYNT  V  +DG 
Sbjct: 63  DTKWYEFAEEIPNG----PTTKRFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGT 118

Query: 190 LIAKHRKIHL 199
            + K+RK H+
Sbjct: 119 YLGKYRKNHI 128

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 287

>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 27/152 (17%)

Query: 84  KVGLCQL-SVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           +V + Q+  V  D E N+      IE A E+GA L++ PE+  + Y+             
Sbjct: 1   RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYN------------- 47

Query: 143 GGDASPSTAMLSEVARLLK-------ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195
            GD     AM ++  RL         I +V G + E    R YN+      DG+++  HR
Sbjct: 48  LGDLVYEVAMHADDPRLQALAEASGGICVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHR 106

Query: 196 KIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
           K++L     P    F E +    G      DT
Sbjct: 107 KVYL-----PTYGLFEEGRYFAPGSHLRAFDT 133

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 269

>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 79  PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYA 137
              K  V   Q + + D+  N+  A R + EA  KGA +IL+ E++   Y    F     
Sbjct: 3   MGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYY----FCQAQR 58

Query: 138 EDIDAGGDASPSTAMLSEVARLLKI--TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195
           ED             ++ + +L K    ++  S  E + +  YN+  +  +DG  +  +R
Sbjct: 59  EDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYR 118

Query: 196 KIHLFD 201
           K H+ D
Sbjct: 119 KSHIPD 124

Length = 296

>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 17/128 (13%)

Query: 83  FKVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF---PV--- 135
            +    Q+S V    E  +A    AI EAA KG +LI+ PE +   Y + SF   PV   
Sbjct: 3   VRAAAVQISPVLFSLEGTLAKVLEAIAEAAGKGVQLIVFPETFVPYYPYFSFVQPPVLMG 62

Query: 136 ------YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189
                 Y + +   G   P T  ++E AR   + +V G + ER    LYNT  +F +DG+
Sbjct: 63  KEHLRLYEQAVVVPG---PVTDAVAEAAREHGMVVVLG-VNERDHGSLYNTQLIFDADGE 118

Query: 190 LIAKHRKI 197
           L+ K RKI
Sbjct: 119 LVLKRRKI 126

This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165 [Unknown function, Enzymes of unknown specificity]. Length = 301

>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 31/134 (23%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPE--IWN-SPYSH---DSFPVY 136
           ++ L QL+ T  D E N      AI EA  +GA L++ PE  +    P        F   
Sbjct: 1   RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDF--- 57

Query: 137 AEDIDAGGDASPSTAMLSEVARLLK----ITIVGGSIPERSGDRLYNTCCVFGSDGKLIA 192
              ++A      +   L E+A          +VG  +P R   +LYN   V   +GK++ 
Sbjct: 58  ---LEA------AEEALEELAAATADLDIAVVVG--LPLRHDGKLYNAAAVL-QNGKILG 105

Query: 193 KHRKIHL-----FD 201
              K  L     FD
Sbjct: 106 VVPKQLLPNYGVFD 119

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to classes 7 and 8. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase forms a homooctamer. Length = 261

>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 51/174 (29%), Positives = 70/174 (40%), Gaps = 36/174 (20%)

Query: 64  PEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEE--------AAEKGA 115
           PEQ R P  +          +VGL Q  +       IA  R AI +        AA  G 
Sbjct: 55  PEQTRPPRIV----------RVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGV 104

Query: 116 KLILLPEIWNSPY---SHDSFP--VYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP 170
            +I   E W  P+   + +  P   +AE  + G    P+T    E+A+   + IV   I 
Sbjct: 105 NIICFQEAWTMPFAFCTREKLPWCEFAESAEDG----PTTKFCQELAKKYNMVIVS-PIL 159

Query: 171 ERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET 221
           ER    GD ++NT  V  + G ++ K RK H     IP    F ES     G T
Sbjct: 160 ERDEEHGDTIWNTAVVISNSGNVLGKSRKNH-----IPRVGDFNESTYYMEGNT 208

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 363

>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 60/220 (27%), Positives = 89/220 (40%), Gaps = 40/220 (18%)

Query: 21  HLYSPLSRSIF---LGKAKPVFQSPPLIRTHSSNPNPNPIMAS-SSKPEQARAPPALPLP 76
            L+  +SR +     G+   +   P   +  S   + +      ++  EQ RAP  +   
Sbjct: 31  ELFQEVSRLLLGLNCGRPVEMIALPEAAKALSKAHDFDLQAFRFTADKEQLRAPRVV--- 87

Query: 77  TPPVAKFKVGLCQLSVTADKERNIAHARRAI--------EEAAEKGAKLILLPEIWNSPY 128
                  +VGL Q S+        A  +RAI        + A   G  ++ L E W  P+
Sbjct: 88  -------RVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPF 140

Query: 129 S----HDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTC 181
           +       +  +AE +D       ST  L E+AR   + IV   I ER    G+ L+NT 
Sbjct: 141 AFCTREKRWCEFAEPVDG-----ESTKFLQELARKYNMVIVS-PILERDVNHGETLWNTA 194

Query: 182 CVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET 221
            V G++G +I KHRK H     IP    F ES     G T
Sbjct: 195 VVIGNNGNIIGKHRKNH-----IPRVGDFNESTYYMEGNT 229

Length = 405

>gnl|CDD|178120 PLN02504, PLN02504, nitrilase

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 21/124 (16%)

Query: 91  SVTADKERNIAHARRAIEEAAEKGAKLILLPEIW----------------NSPYSHDSFP 134
           +V  D    +  A R I EAA  G++L++ PE +                 SP   + F 
Sbjct: 34  TVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFR 93

Query: 135 VY-AEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAK 193
            Y A  ID  G   P    L+ +A   K+ +V G I ER G  LY T   F   G+ + K
Sbjct: 94  KYHASAIDVPG---PEVDRLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDPQGQYLGK 149

Query: 194 HRKI 197
           HRK+
Sbjct: 150 HRKL 153

Length = 346

>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 28/133 (21%)

Query: 83  FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS------HDSFPV 135
            ++ L QL+ T  D   N A    A  EAA+ GA L+L PE++ S Y         +F  
Sbjct: 1   LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAF-- 58

Query: 136 YAEDIDAGGDASPSTAMLSEVARLLK--ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAK 193
               + A        A L  +A        ++ G  P R G +LYN   +    G+++A 
Sbjct: 59  ----LAA------CEAALERLAAATAGGPAVLVGH-PWREGGKLYNAAALL-DGGEVLAT 106

Query: 194 HRKIHL-----FD 201
           +RK  L     FD
Sbjct: 107 YRKQDLPNYGVFD 119

Length = 540

>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 18/146 (12%)

Query: 84  KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAG 143
           ++ + Q + T D   N+A   R   EA   GA+L++ PE+  +     +        +A 
Sbjct: 1   RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA-------SEAE 53

Query: 144 GDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID 203
            D  P+ + L  +AR L++ +V G   E  GD LYN+  + G +G L+  +RK HL    
Sbjct: 54  SDTGPAVSALRRLARRLRLYLVAG-FAEADGDGLYNSAVLVGPEG-LVGTYRKTHL---- 107

Query: 204 IPGKITFIESKSLTAGETPTIVDTGL 229
                   E    T G+T  + D  L
Sbjct: 108 -----IEPERSWATPGDTWPVYDLPL 128

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 279

>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 14/115 (12%)

Query: 92  VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAEDIDAGGDASP 148
              +KERNI       EEAA  GA+LI+ PE+  + Y          + E I       P
Sbjct: 11  EMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPI-----PGP 65

Query: 149 STAMLSEVARLLKITIVGGSIPE---RSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
           +TA  +E+AR     IV G +PE   RSG   YN+  + G  G +I +HRK H +
Sbjct: 66  TTARFAELAREHDCYIVVG-LPEVDSRSG-IYYNSAVLIGPSG-VIGRHRKTHPY 117

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 96  KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY----AEDIDA---GGDASP 148
           +E  +A     +EEAA +GA+L++ PE+  + +    FP +      ++D+       +P
Sbjct: 20  RESVVARLIALLEEAASRGAQLVVFPELALTTF----FPRWYFPDEAELDSFFETEMPNP 75

Query: 149 STAMLSEVARLLKITIVGG---SIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
            T  L + A+ L I    G      +    R +NT  +    GK++ K+RK+HL
Sbjct: 76  ETQPLFDRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHL 129

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers. Length = 302

>gnl|CDD|143591 cd07567, biotinidase_like, biotinidase and vanins (class 4 nitrilases)

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)

Query: 97  ERNIAHARRAIEEAAEKGAKLILLPE--IWNSPYSHDSFPVYAEDIDAGG---------- 144
           E+N+      I+ AA++GA +I+ PE  +    ++      + ED+              
Sbjct: 23  EKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDPD 82

Query: 145 --DASPSTAMLSEVARLLKITIVGGSIPER------------SGDRLYNTCCVFGSDGKL 190
             D +     LS  AR   I +V  ++ E+             G   YNT  VF  DG L
Sbjct: 83  RFDYTEVLQRLSCAARENSIYVVA-NLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTL 141

Query: 191 IAKHRKIHLF---DIDIPGK---ITF 210
           IA++RK +LF     D+P +   +TF
Sbjct: 142 IARYRKYNLFGEPGFDVPPEPEIVTF 167

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking free cysteamine are less susceptible to intestinal inflammation, and expression of vanin-1 and -3 is induced as part of the inflammatory-regenerative differentiation program of human epidermis. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 4. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 299

>gnl|CDD|143599 cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 21/146 (14%)

Query: 84  KVGLCQLS-VTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           K+ L Q   V  D E N+AH    IE+  EK   LI+LPE++ + +S ++  + AE ++ 
Sbjct: 2   KIALIQTDLVWEDPEANLAHFEEKIEQLKEK-TDLIVLPEMFTTGFSMNAEAL-AEPMN- 58

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS-DGKLIAKHRKIHLFD 201
                P+   +   A+     I  GS+  + G + YN    F + DG+ +  + K HLF 
Sbjct: 59  ----GPTLQWMKAQAKKKGAAIT-GSLIIKEGGKYYNR-LYFVTPDGE-VYHYDKRHLF- 110

Query: 202 IDIPGKITFI-ESKSLTAGETPTIVD 226
                      E K  TAG    IV+
Sbjct: 111 -------RMAGEHKVYTAGNERVIVE 129

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer. Length = 252

>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases)

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 25/147 (17%)

Query: 93  TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAM 152
              ++  +        E A++   L++ PE         + P   +          + A 
Sbjct: 18  PEQRQATLDRYLDLTRELADEKPDLVVWPE--------TALPFDLQRDP------DALAR 63

Query: 153 LSEVARLLKITIVGGSI-PERSGDRLYNTCCVFGSDGKLIAKHRKIHL----------FD 201
           L+  AR +   ++ G+   E  G R YN+  +    G ++ ++ K HL            
Sbjct: 64  LARAARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDL 123

Query: 202 IDIPGKITFIESKSLTAGETPTIVDTG 228
           +   G +  +     + G  P  +  G
Sbjct: 124 LRFLGLLFDLPMGDFSPGTGPQPLLLG 150

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9. Length = 270

>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED--I 140
           +V      V  AD   N A        AA+ G  L + PE+  S YS D   ++ +D  +
Sbjct: 14  RVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDD--LFLQDTLL 71

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIA 192
           DA  DA     ++   A L  + +VG   P R   RLYN   V    G+++ 
Sbjct: 72  DAVEDA--LATLVEASADLDPLLVVG--APLRVRHRLYNCAVVI-HRGRILG 118

Length = 679

>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 19/121 (15%)

Query: 95  DKERNIAHA----RRAIEEAAEKGAKLILLPEIWNSPYSHDSF----PVYAEDIDAGGDA 146
             E N++ A     +  + A  K   +++LPE+  + Y+  S     P Y E   +G   
Sbjct: 13  QVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKP-YLEPTTSG--- 68

Query: 147 SPSTAMLSEVARLLK-ITIVGGSIPERSGD---RLYNTCCVFGSDGKLIAKHRKIHLFDI 202
            PS     EVA+      ++G   PE+  +   +LYN+  V   +G+++  +RK  L+  
Sbjct: 69  -PSFEWAREVAKKFNCHVVIG--YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYT 125

Query: 203 D 203
           D
Sbjct: 126 D 126

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3. Length = 295

>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 26/123 (21%)

Query: 93  TADKERNIAHARRAIEEA-----AEKGAKLILLPEIWNSPYSHDSFP------VYAED-- 139
            AD   NI      I+ A          +L++LPE     Y+   FP      V+  D  
Sbjct: 16  RADILANIDRINEQIDAAVGFSGPGLPVRLVVLPE-----YALQGFPMGEPREVWQFDKA 70

Query: 140 -IDAGGDASPSTAMLSEVARLLKITIVGG---SIPERSGDRLYNTCCVFGSDGKLIAKHR 195
            ID  G   P T  L E A+ L + I        P+  G   +NT  +    G++I ++R
Sbjct: 71  AIDIPG---PETEALGEKAKELNVYIAANAYERDPDFPG-LYFNTAFIIDPSGEIILRYR 126

Query: 196 KIH 198
           K++
Sbjct: 127 KMN 129

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 294

>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 26/136 (19%)

Query: 73  LPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIE------EAAEKGAKLILLPEIWNS 126
            P P P +   KV L Q ++    + + A     ++        A   A LI+ PE    
Sbjct: 213 TPAPEPAL---KVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPALGPADLIIWPET--- 266

Query: 127 PYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI---PERSGDRLYNTCCV 183
                + P   ED+            L ++AR     ++ G+     ++     YN+  V
Sbjct: 267 -----AIPFLLEDL-----PQAFLKALDDLAREKGSALITGAPRAENKQGRYDYYNSIYV 316

Query: 184 FGSDGKLIAKHRKIHL 199
            G    ++ ++ K HL
Sbjct: 317 LG-PYGILNRYDKHHL 331

Length = 505

>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 68  RAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEE------AAEKGAKLILLP 121
               A P+P P      V L Q ++  D + +       +E        A +   L++ P
Sbjct: 148 ELKSATPVPGP---TLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVEKPDLVVWP 204

Query: 122 EIWNSPYSHDSFPVYAEDIDAGGDASPSTAM--LSEVARLLKITIVGGSIPERSGD--RL 177
           E         +FP   E+       SP      L  +     I I+ G+     G     
Sbjct: 205 E--------TAFPFDLEN-------SPQKLADRLKLLVLSKGIPILIGAPDAVPGGPYHY 249

Query: 178 YNTCCVFGSDGKLIAKHRKIHLF 200
           YN+  +    G+++ ++ K+ L 
Sbjct: 250 YNSAYLVDPGGEVVQRYDKVKLV 272

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property [Protein fate, Protein modification and repair]. Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	100.0
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	99.97
PLN00202	405	beta-ureidopropionase	99.96
PLN02798	286	nitrilase	99.96
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	99.96
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	99.96
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	99.96
PRK10438	256	C-N hydrolase family amidase; Provisional	99.96
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	99.95
PLN02747	296	N-carbamolyputrescine amidase	99.95
PLN02504	346	nitrilase	99.95
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	99.95
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	99.95
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	99.95
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	99.95
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	99.95
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	99.95
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	99.95
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	99.95
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	99.94
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	99.94
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	99.94
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	99.94
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	99.94
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	99.94
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	99.94
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	99.94
COG0388	274	Predicted amidohydrolase [General function predict	99.94
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.93
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	99.93
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	99.93
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	99.93
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	99.93
PRK13981	540	NAD synthetase; Provisional	99.92
PRK02628	679	nadE NAD synthetase; Reviewed	99.92
PRK13287	333	amiF formamidase; Provisional	99.92
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	99.92
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	99.91
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.91
PRK13286	345	amiE acylamide amidohydrolase; Provisional	99.91
KOG0805	337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.89
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	99.88
KOG0808	387	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.87
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	99.85
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	99.84
PRK13825	388	conjugal transfer protein TraB; Provisional	99.74
COG0815	518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	99.63
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	98.81
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	86.96
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	85.41
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	83.09
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	81.26

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=4e-32  Score=250.53  Aligned_cols=197  Identities=25%  Similarity=0.394  Sum_probs=163.8

Q ss_pred             cceeccCCCCccCChhhhhhcCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCceEEEEEecccc--------cCHHHH
Q 025863           28 RSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT--------ADKERN   99 (247)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kValvQ~~i~--------~d~~~n   99 (247)
                      +||+||++...+++|.   .+     ...+....|..+..+.++. ++.....+.||||++|+++.        +|.++|
T Consensus        18 ~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~n   88 (363)
T cd07587          18 KRILYGEEVKPLELPE---SA-----LDLAKENDFELKGYKFEAA-PEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAI   88 (363)
T ss_pred             HHHHcCCCCccCCCCH---HH-----HHHHHhcCceEEEeecCCC-hhhcCCCceEEEEEEeccccccccCccccCHHHH
Confidence            6899999999999997   44     3456677899999988765 55555566799999999854        489999


Q ss_pred             HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC-----cchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-
Q 025863          100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-  173 (247)
Q Consensus       100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~-----~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-  173 (247)
                      ++++.+++++|+++|+|||||||+|++||....     +...++...    +++.++.|+++|++++++|++| +.+++ 
T Consensus        89 l~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~----~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~  163 (363)
T cd07587          89 HDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAE----DGPTTKFCQELAKKYNMVIVSP-ILERDE  163 (363)
T ss_pred             HHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccC----CChHHHHHHHHHHHcCcEEEEe-eeeeec
Confidence            999999999999999999999999999986432     122333332    3589999999999999999988 66665 


Q ss_pred             --CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceecccccc
Q 025863          174 --GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       174 --~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                        ++++|||+++|+++|+++++|+|+||+++     ..+.|+.+|.+|+. +.+|+++++|+|+   +||||...|
T Consensus       164 ~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~-----~~~~E~~~f~~G~~~~~vf~t~~griG~---~ICyD~~fP  231 (363)
T cd07587         164 EHGDTIWNTAVVISNSGNVLGKSRKNHIPRV-----GDFNESTYYMEGNTGHPVFETQFGKIAV---NICYGRHHP  231 (363)
T ss_pred             CCCCcEEEEEEEECCCCCEEeeeeeEecCCC-----CCccceeEEecCCCCCceEEcCCceEEE---EEecccCCc
Confidence              36899999999999999999999999763     25789999999986 7899999999988   999998654

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=99.97  E-value=1.8e-29  Score=221.72  Aligned_cols=157  Identities=45%  Similarity=0.694  Sum_probs=136.1

Q ss_pred             EEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863           84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT  163 (247)
Q Consensus        84 kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~  163 (247)
                      |||++|+++.+|.++|++++++++++|+++|+|||||||++++||...+.......   ....++..+.++++|++++++
T Consensus         1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~i~   77 (265)
T cd07572           1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAE---EEGDGPTLQALSELAKEHGIW   77 (265)
T ss_pred             CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhc---cccCChHHHHHHHHHHHCCeE
Confidence            69999999889999999999999999999999999999999999976543332000   011357899999999999999


Q ss_pred             EEEeeeeeecC--CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceec
Q 025863          164 IVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISF  241 (247)
Q Consensus       164 Iv~Gs~~e~~~--~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICy  241 (247)
                      +++|+++++++  +++||++++++|+|+++..|+|+||++..+|.+..+.|..+|++|++..+|+++++|+|+   +|||
T Consensus        78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~~~~~~~~~~ig~---~IC~  154 (265)
T cd07572          78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEVVVVDTPFGKIGL---GICY  154 (265)
T ss_pred             EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcceEEecCCceEEE---EEEe
Confidence            99997777766  899999999999999999999999988777876678899999999999999999999988   9999


Q ss_pred             ccccc
Q 025863          242 SQIIH  246 (247)
Q Consensus       242 D~~~~  246 (247)
                      |...+
T Consensus       155 D~~~p  159 (265)
T cd07572         155 DLRFP  159 (265)
T ss_pred             ccCcH
Confidence            97643

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>PLN00202 beta-ureidopropionase

Probab=99.96  E-value=2.3e-29  Score=234.93  Aligned_cols=196  Identities=27%  Similarity=0.416  Sum_probs=154.0

Q ss_pred             cceecc----CCCCccCChhhhhhcCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCceEEEEEecccc--------cC
Q 025863           28 RSIFLG----KAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT--------AD   95 (247)
Q Consensus        28 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kValvQ~~i~--------~d   95 (247)
                      +||+||    ++...+++|..+-..        +....|......+... .+.....+.||||++|.++.        .+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~rValiQ~~i~~~~~~~~~~~  107 (405)
T PLN00202         37 SRLLLGLNCGRPVEMIALPEAAKAL--------SKAHDFDLQAFRFTAD-KEQLRAPRVVRVGLIQNSIALPTTAPFADQ  107 (405)
T ss_pred             HHHHhCcccCCccccCCCCHHHHHH--------HHhcCceEEEeeecCC-HhHcCCCCeEEEEEEecccccCCCCcccCC
Confidence            679999    999999998754333        1112355555444332 22333355699999999973        48


Q ss_pred             HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCC----CcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeee
Q 025863           96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHD----SFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPE  171 (247)
Q Consensus        96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~----~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e  171 (247)
                      .++|++++.+++++|++.|+|||||||+|++||...    .+.+.++.++     ++..+.++++|++++++|++| +.+
T Consensus       108 ~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-----g~~~~~l~~lA~~~~i~Iv~G-~~e  181 (405)
T PLN00202        108 KRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-----GESTKFLQELARKYNMVIVSP-ILE  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-----CHHHHHHHHHHHHCCeEEEEE-eee
Confidence            999999999999999999999999999999998542    1333444432     588999999999999999999 666


Q ss_pred             ec---CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceecccccc
Q 025863          172 RS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       172 ~~---~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                      ++   ++++|||+++|+++|+++++|||+||++++     .+.|+.+|.+|+. ..+|++++||+|+   +||||...|
T Consensus       182 ~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g-----~~~E~~~f~~G~~g~~vf~t~~gkiGv---~ICYD~~FP  252 (405)
T PLN00202        182 RDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVG-----DFNESTYYMEGNTGHPVFETAFGKIAV---NICYGRHHP  252 (405)
T ss_pred             eecCCCCcEEEEEEEECCCCcEEEEEecccCCCCC-----CccccceeecCCCCceEEEeCCCeEEE---EEccccccH
Confidence            54   357999999999999999999999997642     4679999999986 6899999999988   999997643

>PLN02798 nitrilase

Probab=99.96  E-value=4.1e-29  Score=223.12  Aligned_cols=160  Identities=29%  Similarity=0.394  Sum_probs=135.8

Q ss_pred             CCCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCC-CCCCCCCCcchhhhhhccCCCChHHHHHHHHHH
Q 025863           79 PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIW-NSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA  157 (247)
Q Consensus        79 ~~~~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~-l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~A  157 (247)
                      +.++||||++|+++.+|.++|++++++++++|+++|+|||||||++ ++|+...+...+.+..     .++..+.++++|
T Consensus         7 ~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~-----~~~~~~~l~~~A   81 (286)
T PLN02798          7 AGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPL-----DGPIMQRYRSLA   81 (286)
T ss_pred             ccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccC-----CCHHHHHHHHHH
Confidence            3457999999999889999999999999999999999999999984 4677644333333332     257899999999


Q ss_pred             HhcCcEEEEeeeeee--cCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEecc
Q 025863          158 RLLKITIVGGSIPER--SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFY  235 (247)
Q Consensus       158 r~~~i~Iv~Gs~~e~--~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~  235 (247)
                      +++++++++|+.+++  +++++||++++|+|+|++++.|+|+|||+..+|++..+.|..+|.+|++..+|+++++|+|+ 
T Consensus        82 ~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~-  160 (286)
T PLN02798         82 RESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGL-  160 (286)
T ss_pred             HHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEE-
Confidence            999999998866665  46789999999999999999999999988767876666798999999999999999999988 


Q ss_pred             ccceecccccc
Q 025863          236 NGLISFSQIIH  246 (247)
Q Consensus       236 ~~lICyD~~~~  246 (247)
                        +||||..-|
T Consensus       161 --~IC~D~~fp  169 (286)
T PLN02798        161 --TVCYDLRFP  169 (286)
T ss_pred             --EEEEcccCh
Confidence              999997643

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=99.96  E-value=5.2e-29  Score=220.54  Aligned_cols=151  Identities=28%  Similarity=0.424  Sum_probs=129.0

Q ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc----hhhhhhccCCCChHHHHHHHHHHH
Q 025863           83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP----VYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        83 ~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~----~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      ||||++|+++.+|.++|++++++++++|+++|+|||||||++++||...+..    ..++..+    .++.++.++++|+
T Consensus         1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~----~~~~~~~l~~~a~   76 (279)
T TIGR03381         1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVE----GHPAIKRFQALAK   76 (279)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCC----CChHHHHHHHHHH
Confidence            6899999998899999999999999999999999999999999999654321    1122111    2478999999999


Q ss_pred             hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEecccc
Q 025863          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNG  237 (247)
Q Consensus       159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~  237 (247)
                      +++++|++| +++++++++||++++|+|+|++++.|+|+||+.     ...+.|..+|++|+ .+.+|+++++|+|+   
T Consensus        77 ~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~E~~~f~~G~~~~~~f~~~~~~ig~---  147 (279)
T TIGR03381        77 ELGVVIPVS-FFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPD-----GPGYQEKFYFRPGDTGFKVWDTRYGRIGV---  147 (279)
T ss_pred             HcCcEEEEe-eeecCCCceEEeEEEECCCCCEEEEEEeeecCC-----CCCcccceeEccCCCCCceEecCCceEEE---
Confidence            999999999 677788899999999999999999999999954     23457888999998 47999999999988   


Q ss_pred             ceecccccc
Q 025863          238 LISFSQIIH  246 (247)
Q Consensus       238 lICyD~~~~  246 (247)
                      +||||...|
T Consensus       148 ~IC~D~~fp  156 (279)
T TIGR03381       148 GICWDQWFP  156 (279)
T ss_pred             EEEcCCcCh
Confidence            999998654

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.96  E-value=1.3e-28  Score=215.30  Aligned_cols=147  Identities=39%  Similarity=0.604  Sum_probs=128.8

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i  162 (247)
                      |||++|+++. .|.++|++++.+++++|+++|+|||||||++++||...+....++..     .++..+.++++|+++++
T Consensus         1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~-----~~~~~~~l~~~a~~~~~   75 (253)
T cd07583           1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADED-----GGETVSFLSELAKKHGV   75 (253)
T ss_pred             CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhccc-----CchHHHHHHHHHHHcCc
Confidence            6999999987 89999999999999999999999999999999999765433222222     35889999999999999


Q ss_pred             EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceecc
Q 025863          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFS  242 (247)
Q Consensus       163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD  242 (247)
                      ++++|+..+.+++++||++++|+|+|+++..|+|+||+++       +.|..+|.+|+++.+|+++++|+|+   +||||
T Consensus        76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~-------~~e~~~~~~G~~~~v~~~~~~rig~---~IC~D  145 (253)
T cd07583          76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL-------MGEDKYLTAGDELEVFELDGGKVGL---FICYD  145 (253)
T ss_pred             EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC-------cCchhhccCCCCceEEEeCCeEEEE---EEEec
Confidence            9999976677788999999999999999999999999663       3688899999999999999999988   99999


Q ss_pred             ccc
Q 025863          243 QII  245 (247)
Q Consensus       243 ~~~  245 (247)
                      ..-
T Consensus       146 ~~~  148 (253)
T cd07583         146 LRF  148 (253)
T ss_pred             ccc
Confidence            754

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=99.96  E-value=4e-28  Score=216.22  Aligned_cols=153  Identities=30%  Similarity=0.426  Sum_probs=128.3

Q ss_pred             CceEEEEEecccc--------cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc----chhhhhhccCCCChH
Q 025863           81 AKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF----PVYAEDIDAGGDASP  148 (247)
Q Consensus        81 ~~~kValvQ~~i~--------~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~----~~~~e~~~~~~~~~~  148 (247)
                      ++||||++|+++.        .+.++|++++.+++++|+++|+|||||||++++||...+.    .+.++...    .++
T Consensus         2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~----~~~   77 (287)
T cd07568           2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIP----NGP   77 (287)
T ss_pred             ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCC----CCh
Confidence            4699999999965        7889999999999999999999999999999999864321    11222221    357


Q ss_pred             HHHHHHHHHHhcCcEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEE
Q 025863          149 STAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVD  226 (247)
Q Consensus       149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~  226 (247)
                      .++.|+++|+++++++++| +.+++ ++++||++++|+|+|++++.|+|+||++++     .+.|..+|.+|+ ...+|+
T Consensus        78 ~~~~l~~~a~~~~i~ii~g-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~-----~~~e~~~f~~G~~~~~~f~  151 (287)
T cd07568          78 TTKRFAALAKEYNMVLILP-IYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVG-----GFWEKFYFRPGNLGYPVFD  151 (287)
T ss_pred             HHHHHHHHHHHCCEEEEEE-eEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCC-----ccceeeeecCCCCCCceEE
Confidence            8999999999999999998 55554 578999999999999999999999996642     467888999998 489999


Q ss_pred             eCCeEEeccccceecccccc
Q 025863          227 TGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       227 ~~~grig~~~~lICyD~~~~  246 (247)
                      ++++|+|+   +||||...|
T Consensus       152 ~~~~~iG~---~ICyD~~fp  168 (287)
T cd07568         152 TAFGKIGV---YICYDRHFP  168 (287)
T ss_pred             cCCceEEE---EEEecccCc
Confidence            99999988   999998754

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=99.96  E-value=5.1e-28  Score=213.07  Aligned_cols=146  Identities=22%  Similarity=0.316  Sum_probs=122.0

Q ss_pred             CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        80 ~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      |++||||++|+++. +|.++|++++.++++++  .|+|||||||++++||...+.   .+...    .++..+.|+++|+
T Consensus         1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~---~~~~~----~~~~~~~l~~~A~   71 (256)
T PRK10438          1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAA---ASSLP----QDDVVAWMTAKAQ   71 (256)
T ss_pred             CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccch---hhccc----cchHHHHHHHHHH
Confidence            34699999999975 89999999999999986  699999999999999976432   12221    2468899999999


Q ss_pred             hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccc
Q 025863          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGL  238 (247)
Q Consensus       159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~l  238 (247)
                      ++++.+ +|+..+++++++|||+++|+|+|. +..|+|+|||++       +.|..+|++|++..+|+++++|+|+   +
T Consensus        72 ~~~~~i-~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~iG~---~  139 (256)
T PRK10438         72 QTNALI-AGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM-------ADEHLHYKAGNARVIVEWRGWRILP---L  139 (256)
T ss_pred             HcCeEE-EEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEE---E
Confidence            999854 565656667789999999999997 579999999763       3688999999999999999999988   9


Q ss_pred             eecccccc
Q 025863          239 ISFSQIIH  246 (247)
Q Consensus       239 ICyD~~~~  246 (247)
                      ||||...|
T Consensus       140 ICyD~~fP  147 (256)
T PRK10438        140 VCYDLRFP  147 (256)
T ss_pred             EEeecCCH
Confidence            99998754

>cd07576 R-amidase_like Pseudomonas sp

Probab=99.95  E-value=1.1e-27  Score=209.15  Aligned_cols=146  Identities=30%  Similarity=0.454  Sum_probs=127.6

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch-hhhhhccCCCChHHHHHHHHHHHhcC
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK  161 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~-~~e~~~~~~~~~~~~~~l~~~Ar~~~  161 (247)
                      |||++|+++. +|.++|++++.+++++|+++|+|||||||++++||...+... ..+.     ..++.++.++++|++++
T Consensus         1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~~~~   75 (254)
T cd07576           1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEP-----ADGPALQALRAIARRHG   75 (254)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcc-----cCChHHHHHHHHHHHcC
Confidence            6999999985 899999999999999999999999999999999997654321 1111     13578999999999999


Q ss_pred             cEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceec
Q 025863          162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISF  241 (247)
Q Consensus       162 i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICy  241 (247)
                      +++++| +++++++++||++++|+++|+++..|+|+||++        +.|..+|.+|++..+|+++++|+|+   +|||
T Consensus        76 ~~ii~G-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~--------~~E~~~~~~G~~~~v~~~~~~kig~---~IC~  143 (254)
T cd07576          76 IAIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG--------DSERAAFTPGDRFPVVELRGLRVGL---LICY  143 (254)
T ss_pred             CEEEEe-ccccCCCceEEEEEEECCCCCEeeEEEeeccCC--------cchhhhccCCCCceEEEECCeEEEE---EEee
Confidence            999999 778888899999999999999999999999965        2688899999999999999999988   9999


Q ss_pred             ccccc
Q 025863          242 SQIIH  246 (247)
Q Consensus       242 D~~~~  246 (247)
                      |..-|
T Consensus       144 D~~fp  148 (254)
T cd07576         144 DVEFP  148 (254)
T ss_pred             cCCCC
Confidence            97643

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>PLN02747 N-carbamolyputrescine amidase

Probab=99.95  E-value=1.5e-27  Score=213.82  Aligned_cols=154  Identities=25%  Similarity=0.342  Sum_probs=129.5

Q ss_pred             CCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc----chhhhhhccCCCChHHHHHHHH
Q 025863           80 VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF----PVYAEDIDAGGDASPSTAMLSE  155 (247)
Q Consensus        80 ~~~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~----~~~~e~~~~~~~~~~~~~~l~~  155 (247)
                      .+++|||++|+++.+|.++|++++.+++++|++.|+|||||||++++||.....    ....+..+    .++.++.+++
T Consensus         4 ~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~----~~~~~~~l~~   79 (296)
T PLN02747          4 GRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYE----GHPTIARMQK   79 (296)
T ss_pred             CcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCC----CChHHHHHHH
Confidence            357999999999889999999999999999999999999999999999865321    11112111    2478899999


Q ss_pred             HHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEec
Q 025863          156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLF  234 (247)
Q Consensus       156 ~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~  234 (247)
                      +|++++++|++| .++++++++||++++|+|+|+++++|+|.||+.     ...+.|..+|++|+. ..+|+++++|+|+
T Consensus        80 ~a~~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~e~~~~~~G~~~~~~~~~~~~rig~  153 (296)
T PLN02747         80 LAKELGVVIPVS-FFEEANNAHYNSIAIIDADGTDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFDTKFAKIGV  153 (296)
T ss_pred             HHHHcCeEEEee-eeecCCCceEEEEEEECCCCCCcceEEEEecCC-----CCCccceeeecCCCCCCeeEEcCCccEEE
Confidence            999999999998 667778899999999999999999999999943     234568888999974 7999999999988


Q ss_pred             cccceecccccc
Q 025863          235 YNGLISFSQIIH  246 (247)
Q Consensus       235 ~~~lICyD~~~~  246 (247)
                         +||||...|
T Consensus       154 ---~IC~D~~fp  162 (296)
T PLN02747        154 ---AICWDQWFP  162 (296)
T ss_pred             ---EEEccccch
Confidence               999998754

>PLN02504 nitrilase

Probab=99.95  E-value=2.9e-27  Score=217.05  Aligned_cols=156  Identities=26%  Similarity=0.368  Sum_probs=128.7

Q ss_pred             CCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC-cc------------hhhhh-hcc
Q 025863           78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-FP------------VYAED-IDA  142 (247)
Q Consensus        78 ~~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~-~~------------~~~e~-~~~  142 (247)
                      +.+++||||++|+++. .|.++|++++++++++|++.|+|||||||++++||.... +.            ..... ..+
T Consensus        20 ~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a   99 (346)
T PLN02504         20 ASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASA   99 (346)
T ss_pred             ccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhc
Confidence            3456799999999975 899999999999999999999999999999999996421 11            11000 011


Q ss_pred             CCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC--
Q 025863          143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--  220 (247)
Q Consensus       143 ~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~--  220 (247)
                      ...+++.++.|+++|++++++|++| ..+++++++||++++|+++|+++.+|+|+|++.         .|+.+|.+|.  
T Consensus       100 ~~~~g~~i~~l~~~A~~~~i~iv~G-~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~---------~E~~~f~~G~g~  169 (346)
T PLN02504        100 IDVPGPEVDRLAAMAGKYKVYLVMG-VIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA---------LERLIWGFGDGS  169 (346)
T ss_pred             ccCCCHHHHHHHHHHHHcCCEEEEe-eeecCCCceEEEEEEECCCCCEEeEEeeccCCc---------ccceeeecCCCC
Confidence            1234688999999999999999999 567788899999999999999999999999843         5888899887  


Q ss_pred             CCeEEEeCCeEEeccccceecccccc
Q 025863          221 TPTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       221 ~~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                      ++.+|+++++|+|+   +||||...|
T Consensus       170 ~~~vf~~~~griG~---lICyD~~fP  192 (346)
T PLN02504        170 TIPVYDTPIGKIGA---VICWENRMP  192 (346)
T ss_pred             CCceEEcCCceEEE---EEeccchhH
Confidence            57899999999988   999997654

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.95  E-value=2.3e-27  Score=211.57  Aligned_cols=142  Identities=30%  Similarity=0.468  Sum_probs=123.7

Q ss_pred             EEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863           84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT  163 (247)
Q Consensus        84 kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~  163 (247)
                      |||++|+++..|+++|++++++++++|+++|+|||||||++++||....  ..++..     .++.++.++++|++++++
T Consensus         1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~--~~~~~~-----~~~~~~~l~~lA~~~~i~   73 (279)
T cd07579           1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA--SEAESD-----TGPAVSALRRLARRLRLY   73 (279)
T ss_pred             CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH--HhcccC-----CCHHHHHHHHHHHHcCeE
Confidence            6999999987899999999999999999999999999999999996431  122221     357899999999999999


Q ss_pred             EEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceeccc
Q 025863          164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQ  243 (247)
Q Consensus       164 Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD~  243 (247)
                      +++| ..+++++++||++++|+++| ++..|+|+||++         .|..+|.+|++..+|+++++|+|+   +||||.
T Consensus        74 iv~G-~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~---------~E~~~f~~G~~~~v~~~~~~kiG~---~ICyD~  139 (279)
T cd07579          74 LVAG-FAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE---------PERSWATPGDTWPVYDLPLGRVGL---LIGHDA  139 (279)
T ss_pred             EEEe-ceEccCCcEEEEEEEEeCCe-eEEEEecccCCC---------cchhhccCCCCCeeEEcCceeEEE---EEeccc
Confidence            9999 56777889999999999999 679999999964         488899999999999999999988   999997


Q ss_pred             ccc
Q 025863          244 IIH  246 (247)
Q Consensus       244 ~~~  246 (247)
                      .-|
T Consensus       140 ~fP  142 (279)
T cd07579         140 LFP  142 (279)
T ss_pred             cCc
Confidence            643

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=99.95  E-value=5.6e-27  Score=208.22  Aligned_cols=154  Identities=28%  Similarity=0.401  Sum_probs=127.6

Q ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch-hhhhhccCCCChHHHHHHHHHHHhcC
Q 025863           83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK  161 (247)
Q Consensus        83 ~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~-~~e~~~~~~~~~~~~~~l~~~Ar~~~  161 (247)
                      ||||++|+++.+|.++|++++.+++++|++.|+|||||||++++||...+... ..+... ....++.++.++++|++++
T Consensus         1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~la~~~~   79 (284)
T cd07573           1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAE-PPIPGPTTARFQALAKELG   79 (284)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhcc-ccCCCHHHHHHHHHHHHCC
Confidence            69999999999999999999999999999999999999999999997654211 111100 0123578899999999999


Q ss_pred             cEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEeccccce
Q 025863          162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNGLI  239 (247)
Q Consensus       162 i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~lI  239 (247)
                      +++++|+ .+++ ++++||++++|+|+|+++..|+|.||+.     ...+.|..+|.+|+ +..+|+++++++|+   +|
T Consensus        80 i~iv~g~-~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~---~I  150 (284)
T cd07573          80 VVIPVSL-FEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPD-----DPGYYEKFYFTPGDTGFKVFDTRYGRIGV---LI  150 (284)
T ss_pred             EEEEecc-eeeCCCCcEEEEEEEECCCCCEEeEEeeeccCC-----CCcccccceecCCCCCCceEecCCceEEE---EE
Confidence            9999995 4554 5689999999999999999999999843     22457888999999 79999999999988   99


Q ss_pred             ecccccc
Q 025863          240 SFSQIIH  246 (247)
Q Consensus       240 CyD~~~~  246 (247)
                      |||...|
T Consensus       151 C~D~~fp  157 (284)
T cd07573         151 CWDQWFP  157 (284)
T ss_pred             eccccch
Confidence            9998654

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=99.95  E-value=5.1e-27  Score=211.15  Aligned_cols=157  Identities=22%  Similarity=0.292  Sum_probs=127.6

Q ss_pred             ceEEEEEecccc-c--CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc-------hhhhhhccCCCChHHHH
Q 025863           82 KFKVGLCQLSVT-A--DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-------VYAEDIDAGGDASPSTA  151 (247)
Q Consensus        82 ~~kValvQ~~i~-~--d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~-------~~~e~~~~~~~~~~~~~  151 (247)
                      +||||++|+++. .  +.++|++++.+++++|++.|+|||||||++++||......       .+.+.    ...++.++
T Consensus         3 ~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~   78 (302)
T cd07569           3 QVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFET----EMPNPETQ   78 (302)
T ss_pred             eEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhh----cCCChhHH
Confidence            599999999864 3  8899999999999999999999999999999998643211       11111    12357889


Q ss_pred             HHHHHHHhcCcEEEEeeeeee-cCC---eeEEEEEEEccCCcEEEEEeccccCCCC--CCCC-cccccccccccCC-CCe
Q 025863          152 MLSEVARLLKITIVGGSIPER-SGD---RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGK-ITFIESKSLTAGE-TPT  223 (247)
Q Consensus       152 ~l~~~Ar~~~i~Iv~Gs~~e~-~~~---~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~-~~~~E~~~f~~G~-~~~  223 (247)
                      .++++|+++++++++| ++++ .++   ++||++++|+++|++++.|+|+||++++  +|.. ..+.|..+|.+|+ ++.
T Consensus        79 ~l~~~a~~~~i~iv~G-~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~  157 (302)
T cd07569          79 PLFDRAKELGIGFYLG-YAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFP  157 (302)
T ss_pred             HHHHHHHHhCeEEEEe-ceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCc
Confidence            9999999999999999 6664 344   8999999999999999999999997754  2211 1345888999999 889


Q ss_pred             EEEeCCeEEeccccceecccccc
Q 025863          224 IVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       224 vf~~~~grig~~~~lICyD~~~~  246 (247)
                      +|+++++|+|+   +||||..-|
T Consensus       158 v~~~~~~rig~---~IC~D~~fp  177 (302)
T cd07569         158 VFRVPGGIMGM---CICNDRRWP  177 (302)
T ss_pred             eEecCCceEEE---EEeeccccc
Confidence            99999999988   999998654

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=99.95  E-value=3.9e-27  Score=211.51  Aligned_cols=149  Identities=33%  Similarity=0.418  Sum_probs=125.1

Q ss_pred             eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc-----------chhhhhhccCCCChHHH
Q 025863           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-----------PVYAEDIDAGGDASPST  150 (247)
Q Consensus        83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~-----------~~~~e~~~~~~~~~~~~  150 (247)
                      ||||++|+++. +|.++|++++++++++|+++|+|||||||++++||...++           ....+..  ....++.+
T Consensus         1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   78 (297)
T cd07564           1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENS--VEVDGPEL   78 (297)
T ss_pred             CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhC--cCCCCHHH
Confidence            68999999864 8999999999999999999999999999999999975321           1111111  11235889


Q ss_pred             HHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC--CCeEEEeC
Q 025863          151 AMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTG  228 (247)
Q Consensus       151 ~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~--~~~vf~~~  228 (247)
                      +.|+++|++++++|++| ..+++++++||++++|+|+|+++++|+|+||+.         .|..+|.+|+  +..+|+++
T Consensus        79 ~~l~~~a~~~~i~iv~G-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~---------~E~~~~~~g~~~~~~v~~~~  148 (297)
T cd07564          79 ERLAEAARENGIYVVLG-VSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH---------AERLVWGQGDGSGLRVVDTP  148 (297)
T ss_pred             HHHHHHHHHcCcEEEEe-eEeccCCceEEEEEEEcCCCCEeeeeeccCCCc---------hhhhhcccCCCCCceEEecC
Confidence            99999999999999999 567778899999999999999999999999843         6888899886  57899999


Q ss_pred             CeEEeccccceecccccc
Q 025863          229 LMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       229 ~grig~~~~lICyD~~~~  246 (247)
                      ++|+|+   +||||..-|
T Consensus       149 ~~kig~---~ICyD~~fP  163 (297)
T cd07564         149 IGRLGA---LICWENYMP  163 (297)
T ss_pred             CceEEE---EEEhhcCCH
Confidence            999988   999998643

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=99.95  E-value=2.6e-27  Score=197.26  Aligned_cols=152  Identities=34%  Similarity=0.509  Sum_probs=122.2

Q ss_pred             EEEEEeccc---ccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCC-----CCcchhhhhhccCCCChHHHHHHHH
Q 025863           84 KVGLCQLSV---TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-----DSFPVYAEDIDAGGDASPSTAMLSE  155 (247)
Q Consensus        84 kValvQ~~i---~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~-----~~~~~~~e~~~~~~~~~~~~~~l~~  155 (247)
                      |||++|+++   ..|.++|++++.+++++|+++++|||||||++++||..     ....+..+....  ..++.++.+.+
T Consensus         1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~   78 (186)
T PF00795_consen    1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEP--LDGPYLERLAE   78 (186)
T ss_dssp             EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBH--STSHHHHHHHH
T ss_pred             CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccc--cccHHHHHHHH
Confidence            799999995   48999999999999999999999999999999999932     222222111111  01589999999


Q ss_pred             HHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccc-cccccccC-CCCeEEEeC-----
Q 025863          156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFI-ESKSLTAG-ETPTIVDTG-----  228 (247)
Q Consensus       156 ~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~-E~~~f~~G-~~~~vf~~~-----  228 (247)
                      +|+++++++++| +++.+++++||++++|+++|+++++|+|+||++++     .+. |+.+|.+| ....+|+++     
T Consensus        79 ~a~~~~~~i~~G-~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~-----~~~P~~~~~~~g~~~~~~~~~~~~~~~  152 (186)
T PF00795_consen   79 LAKENGITIVAG-IPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFG-----EYIPERRYFSPGGDPFPVFETPVFDFG  152 (186)
T ss_dssp             HHHHHTSEEEEE-EEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTT-----TTTTHHHHSBEESSESEEEEETETEET
T ss_pred             HHHhcCCccccc-ccccccccccceeEEEEeeecccccccceeeeccc-----cccccceeeeeccceeeeeecceeeec
Confidence            999999999999 78889999999999999999999999999996543     233 77888887 446677765     


Q ss_pred             CeEEeccccceecccccc
Q 025863          229 LMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       229 ~grig~~~~lICyD~~~~  246 (247)
                      ++|+|+   +||||...+
T Consensus       153 g~~ig~---~ICyd~~fp  167 (186)
T PF00795_consen  153 GGRIGV---LICYDLRFP  167 (186)
T ss_dssp             TEEEEE---EEGGGGGSH
T ss_pred             cceEEE---EEEcccCCh
Confidence            699988   999997653

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.95  E-value=5.6e-27  Score=205.50  Aligned_cols=148  Identities=30%  Similarity=0.446  Sum_probs=124.4

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch-hhhhhccCCCChHHHHHHHHHHHhcC
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK  161 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~-~~e~~~~~~~~~~~~~~l~~~Ar~~~  161 (247)
                      |||++|+++. +|.++|++++++++++|++.|+|||||||++++||..++... ..+...  ...++.++.++++|++++
T Consensus         1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~   78 (258)
T cd07584           1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSE--PIDGPTVRLFSELAKELG   78 (258)
T ss_pred             CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhcc--CCCCcHHHHHHHHHHHcC
Confidence            6899999865 899999999999999999999999999999999997654321 111101  113578899999999999


Q ss_pred             cEEEEeeeeeecC--CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccce
Q 025863          162 ITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLI  239 (247)
Q Consensus       162 i~Iv~Gs~~e~~~--~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lI  239 (247)
                      +++++| .++.++  +++||++++|+|+|+++..|+|+||++         .|..+|.+|++..+|+++++|+|+   +|
T Consensus        79 i~i~~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~g~---~I  145 (258)
T cd07584          79 VYIVCG-FVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG---------LEKQYFREGEQYPVFDTPFGKIGV---MI  145 (258)
T ss_pred             eEEEEe-ehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc---------hhhhhccCCCCCeeEEcCCceEEE---EE
Confidence            999999 455543  689999999999999999999999964         477789999999999999999988   99


Q ss_pred             ecccccc
Q 025863          240 SFSQIIH  246 (247)
Q Consensus       240 CyD~~~~  246 (247)
                      |||...|
T Consensus       146 C~D~~fp  152 (258)
T cd07584         146 CYDMGFP  152 (258)
T ss_pred             EcCccCh
Confidence            9998654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=99.95  E-value=5.8e-27  Score=205.77  Aligned_cols=150  Identities=27%  Similarity=0.387  Sum_probs=122.2

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i  162 (247)
                      |||++|+++. +|.++|++++.+++++|+++|+|||||||++++||...+..........   ..+.++.+.+.++++++
T Consensus         1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~---~~~~~~~la~~~~~~~i   77 (261)
T cd07570           1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA---AEEALEELAAATADLDI   77 (261)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH---HHHHHHHHHHhcccCCc
Confidence            6999999975 8999999999999999999999999999999999975432211111110   12455566666666799


Q ss_pred             EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceecc
Q 025863          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFS  242 (247)
Q Consensus       163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD  242 (247)
                      ++++| .++++++++||++++| ++|+++..|+|+||++++     .+.|..+|.+|+...+|+++++|+|+   +||||
T Consensus        78 ~ii~G-~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~~ig~---~IC~D  147 (261)
T cd07570          78 AVVVG-LPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYG-----VFDEKRYFTPGDKPDVLFFKGLRIGV---EICED  147 (261)
T ss_pred             EEEEe-ceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCc-----cccccccCccCCCCCeEEECCEEEEE---Eeecc
Confidence            99999 5677788999999999 699999999999996542     45788999999999999999999988   99999


Q ss_pred             cccc
Q 025863          243 QIIH  246 (247)
Q Consensus       243 ~~~~  246 (247)
                      ..-|
T Consensus       148 ~~fp  151 (261)
T cd07570         148 LWVP  151 (261)
T ss_pred             cCCC
Confidence            8643

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.95  E-value=1.1e-26  Score=203.18  Aligned_cols=148  Identities=35%  Similarity=0.547  Sum_probs=126.5

Q ss_pred             EEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc--chhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863           85 VGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (247)
Q Consensus        85 ValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~--~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i  162 (247)
                      ||++|++..+|.++|++++++++++|+++|+|||||||++++||..++.  ....+.+     .+++++.++++|+++++
T Consensus         1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~-----~~~~~~~l~~~a~~~~i   75 (255)
T cd07581           1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPL-----DGPFVSALARLARELGI   75 (255)
T ss_pred             CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccC-----CCHHHHHHHHHHHHcCe
Confidence            6899999889999999999999999999999999999999999976542  2222322     35789999999999999


Q ss_pred             EEEEeeeeeecC-CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC--CeEEEeCCeEEeccccce
Q 025863          163 TIVGGSIPERSG-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET--PTIVDTGLMFLLFYNGLI  239 (247)
Q Consensus       163 ~Iv~Gs~~e~~~-~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~--~~vf~~~~grig~~~~lI  239 (247)
                      ++++| .+++++ +++||++++|+++|+++.+|+|+||++.     ..+.|..+|++|++  ..+++++++|+|+   +|
T Consensus        76 ~iv~G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~kig~---~I  146 (255)
T cd07581          76 TVVAG-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDA-----FGFRESDTVAPGDELPPVVFVVGGVKVGL---AT  146 (255)
T ss_pred             EEEEE-eeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCC-----CCcCcccccCCCCCCCceEEecCCceEEE---EE
Confidence            99999 566654 4899999999999999999999999652     24678889999998  7889999999988   99


Q ss_pred             ecccccc
Q 025863          240 SFSQIIH  246 (247)
Q Consensus       240 CyD~~~~  246 (247)
                      |||...|
T Consensus       147 C~D~~~p  153 (255)
T cd07581         147 CYDLRFP  153 (255)
T ss_pred             EecccCH
Confidence            9998643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.94  E-value=1.5e-26  Score=202.66  Aligned_cols=144  Identities=28%  Similarity=0.420  Sum_probs=124.3

Q ss_pred             eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (247)
Q Consensus        83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~  161 (247)
                      ||||++|+++. +|++.|++++++++++|++ |+|||||||++++||..++. ..++..     .++.++.++++|++++
T Consensus         1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-~~~~~~-----~~~~~~~l~~la~~~~   73 (252)
T cd07575           1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-ALAEPM-----NGPTLQWMKAQAKKKG   73 (252)
T ss_pred             CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-Hhhccc-----CChHHHHHHHHHHHCC
Confidence            69999999986 8999999999999999987 99999999999999975432 223322     3588999999999999


Q ss_pred             cEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceec
Q 025863          162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISF  241 (247)
Q Consensus       162 i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICy  241 (247)
                      +.+++| +++++++++||++++++++|++ ..|+|.||+++       ..|..+|++|++..+|+++++|+|+   +|||
T Consensus        74 i~i~~~-~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~-------~~e~~~~~~G~~~~~~~~~~~~ig~---~IC~  141 (252)
T cd07575          74 AAITGS-LIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRM-------AGEHKVYTAGNERVIVEYKGWKILL---QVCY  141 (252)
T ss_pred             eEEEEE-EEEccCCceEEEEEEECCCCCE-EEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEE---EEEe
Confidence            988876 7777888999999999999986 49999999763       2688899999999999999999988   9999


Q ss_pred             cccc
Q 025863          242 SQII  245 (247)
Q Consensus       242 D~~~  245 (247)
                      |..-
T Consensus       142 D~~~  145 (252)
T cd07575         142 DLRF  145 (252)
T ss_pred             ccCC
Confidence            9654

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.94  E-value=1.7e-26  Score=202.99  Aligned_cols=147  Identities=31%  Similarity=0.439  Sum_probs=122.7

Q ss_pred             eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (247)
Q Consensus        83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~  161 (247)
                      +|||++|++.. +|.++|++++.+++++|++.|+|||||||++++||...+..........  ..++..+.++++|++++
T Consensus         1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~--~~~~~~~~l~~~a~~~~   78 (258)
T cd07578           1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEP--IPGPTTARFAELAREHD   78 (258)
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhccc--CCCHHHHHHHHHHHHcC
Confidence            58999999975 8999999999999999999999999999999999976543222211111  12478899999999999


Q ss_pred             cEEEEeeeeeec--CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEeccccc
Q 025863          162 ITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNGL  238 (247)
Q Consensus       162 i~Iv~Gs~~e~~--~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~l  238 (247)
                      +++++| .+++.  ++++||++++|+++| ++..|+|+||+.         .|..+|.+|+ ...+|+++++|+|+   +
T Consensus        79 i~ii~G-~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~---------~e~~~~~~g~~~~~v~~~~~~rig~---~  144 (258)
T cd07578          79 CYIVVG-LPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI---------SEPKWAADGDLGHQVFDTEIGRIAL---L  144 (258)
T ss_pred             cEEEEe-cceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc---------ccccccCCCCCCceEEECCCccEEE---E
Confidence            999999 55554  478999999999998 789999999853         5778899998 57899999999988   9


Q ss_pred             eeccccc
Q 025863          239 ISFSQII  245 (247)
Q Consensus       239 ICyD~~~  245 (247)
                      ||||...
T Consensus       145 IC~D~~f  151 (258)
T cd07578         145 ICMDIHF  151 (258)
T ss_pred             EeeCCCc
Confidence            9999753

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.94  E-value=1.7e-26  Score=202.72  Aligned_cols=145  Identities=33%  Similarity=0.479  Sum_probs=125.3

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i  162 (247)
                      |||++|+++. +|+++|++++++++++|++.|+|||||||++++||...+.......    ...++.++.++++|+++++
T Consensus         1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~~~   76 (261)
T cd07585           1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAE----VPDGPSTQALSDLARRYGL   76 (261)
T ss_pred             CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcc----cCCChHHHHHHHHHHHcCc
Confidence            6999999986 8999999999999999999999999999999999986543222111    1235789999999999999


Q ss_pred             EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceecc
Q 025863          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFS  242 (247)
Q Consensus       163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD  242 (247)
                      ++++| +++++++++||++++|+++|. +..|+|.||++         .|..+|++|++..+|+++++|+|+   +||||
T Consensus        77 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~---------~E~~~~~~G~~~~v~~~~~~rig~---~IC~D  142 (261)
T cd07585          77 TILAG-LIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR---------REHPYIAAGDEYPVFATPGVRFGI---LICYD  142 (261)
T ss_pred             EEEEe-ccccCCCceeEEEEEECCCCc-EeEEeeecCCc---------cccceEcCCCCCceEEcCCceEEE---EEEcC
Confidence            99999 567778899999999999997 68999999954         578899999999999999999988   99999


Q ss_pred             cccc
Q 025863          243 QIIH  246 (247)
Q Consensus       243 ~~~~  246 (247)
                      ...|
T Consensus       143 ~~~p  146 (261)
T cd07585         143 NHFP  146 (261)
T ss_pred             CcCc
Confidence            8654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.94  E-value=1.6e-26  Score=204.05  Aligned_cols=148  Identities=32%  Similarity=0.440  Sum_probs=124.9

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI  162 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i  162 (247)
                      |||++|+++. ++.++|++++.+++++|++.|+|||||||++++||...+.....+... ....++.++.++++|+++++
T Consensus         1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~   79 (268)
T cd07580           1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAE-EVPDGASTRAWAELAAELGL   79 (268)
T ss_pred             CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhc-cCCCCchHHHHHHHHHHcCc
Confidence            6999999987 899999999999999999999999999999999997655322211110 01124688999999999999


Q ss_pred             EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceec
Q 025863          163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISF  241 (247)
Q Consensus       163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICy  241 (247)
                      ++++| +++++++++||++++++++|. +..|+|+||++         .|..+|++|++ ..+|+++++|+|+   +|||
T Consensus        80 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~---------~e~~~f~~G~~~~~v~~~~~~~ig~---~IC~  145 (268)
T cd07580          80 YIVAG-FAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN---------EEKLLFEPGDLGLPVFDTPFGRIGV---AICY  145 (268)
T ss_pred             EEEee-cccccCCceEEEEEEECCCCc-EEEEEEecCCc---------hhcceecCCCCCCceEEcCCCcEEE---EEEC
Confidence            99999 677778899999999999995 78999999964         58889999998 8999999999988   9999


Q ss_pred             ccccc
Q 025863          242 SQIIH  246 (247)
Q Consensus       242 D~~~~  246 (247)
                      |...|
T Consensus       146 D~~fp  150 (268)
T cd07580         146 DGWFP  150 (268)
T ss_pred             cccch
Confidence            97643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=99.94  E-value=2.7e-26  Score=206.69  Aligned_cols=150  Identities=27%  Similarity=0.336  Sum_probs=121.1

Q ss_pred             eEEEEEecccc-cCH-------HHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch--hhhhhc-----------
Q 025863           83 FKVGLCQLSVT-ADK-------ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV--YAEDID-----------  141 (247)
Q Consensus        83 ~kValvQ~~i~-~d~-------~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~--~~e~~~-----------  141 (247)
                      .|+|++|..+. .+.       ++|++++++++++|++.|+|||||||++++||...++..  .++.+.           
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (299)
T cd07567           1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD   80 (299)
T ss_pred             CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence            47899999863 444       899999999999999999999999999999998655322  111110           


Q ss_pred             -cCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-----------C-CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCc
Q 025863          142 -AGGDASPSTAMLSEVARLLKITIVGGSIPERS-----------G-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKI  208 (247)
Q Consensus       142 -~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-----------~-~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~  208 (247)
                       ....+++.++.|+++|++++++|++| +.++.           + +++|||+++|+++|+++.+|||+|||        
T Consensus        81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf--------  151 (299)
T cd07567          81 PDRFDYTEVLQRLSCAARENSIYVVAN-LGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF--------  151 (299)
T ss_pred             ccccCchHHHHHHHHHHHHhCeEEEec-cccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc--------
Confidence             00123588999999999999999999 55542           2 36999999999999999999999995        


Q ss_pred             ccccccccccCC-CCeEEEeCCe-EEeccccceecccccc
Q 025863          209 TFIESKSLTAGE-TPTIVDTGLM-FLLFYNGLISFSQIIH  246 (247)
Q Consensus       209 ~~~E~~~f~~G~-~~~vf~~~~g-rig~~~~lICyD~~~~  246 (247)
                        .|..+|.+|+ ++.+|++++| |+|+   +||||...|
T Consensus       152 --~E~~~~~~G~~~~~vf~t~~g~kiGv---lICyD~~FP  186 (299)
T cd07567         152 --GEPGFDVPPEPEIVTFDTDFGVTFGI---FTCFDILFK  186 (299)
T ss_pred             --ccccccCCCCCCceEEECCCCCEEEE---EEEeeccch
Confidence              4788899996 5899999986 9988   999997654

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=99.94  E-value=2.2e-26  Score=204.15  Aligned_cols=151  Identities=27%  Similarity=0.426  Sum_probs=123.3

Q ss_pred             eEEEEEecccc--cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCC---CCCcc---hhhhhhccCCCChHHHHHHH
Q 025863           83 FKVGLCQLSVT--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS---HDSFP---VYAEDIDAGGDASPSTAMLS  154 (247)
Q Consensus        83 ~kValvQ~~i~--~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~---~~~~~---~~~e~~~~~~~~~~~~~~l~  154 (247)
                      ||||++|+++.  .|.++|++++++++++|+++|+|||||||++++||.   ..+..   .......  ...++.++.++
T Consensus         1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~   78 (280)
T cd07574           1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALA--ALTPDYVALFS   78 (280)
T ss_pred             CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHH--HHHHHHHHHHH
Confidence            69999999975  799999999999999999999999999999998742   22111   1111111  01357899999


Q ss_pred             HHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEec
Q 025863          155 EVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLF  234 (247)
Q Consensus       155 ~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~  234 (247)
                      ++|++++++|++|++++++++++||++++++|+|.+ .+|+|+||++++       .|..+|.+|++..+|+++++|+|+
T Consensus        79 ~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e-------~~~~~~~~G~~~~v~~~~~~~ig~  150 (280)
T cd07574          79 ELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE-------REEWGISGGDKLKVFDTDLGKIGI  150 (280)
T ss_pred             HHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh-------hhcccccCCCCceEEecCCccEEE
Confidence            999999999999976677788999999999999987 999999997632       344568999999999999999988


Q ss_pred             cccceecccccc
Q 025863          235 YNGLISFSQIIH  246 (247)
Q Consensus       235 ~~~lICyD~~~~  246 (247)
                         +||||...|
T Consensus       151 ---~IC~D~~fp  159 (280)
T cd07574         151 ---LICYDSEFP  159 (280)
T ss_pred             ---EEecccccH
Confidence               999997643

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=99.94  E-value=6.4e-26  Score=196.92  Aligned_cols=148  Identities=39%  Similarity=0.557  Sum_probs=126.8

Q ss_pred             EEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863           85 VGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT  163 (247)
Q Consensus        85 ValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~  163 (247)
                      ||++|+++. ++.++|++++++++++|+++|+|||||||++++||...+.........  .......+.++++|++++++
T Consensus         1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~i~   78 (253)
T cd07197           1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAE--ELDGPTLEALAELAKELGIY   78 (253)
T ss_pred             CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcc--cCCchHHHHHHHHHHHhCeE
Confidence            689999987 999999999999999999999999999999999997654322110010  11357899999999999999


Q ss_pred             EEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceeccc
Q 025863          164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQ  243 (247)
Q Consensus       164 Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD~  243 (247)
                      +++|+ .+++++++||++++++++|+++..|+|.||++        +.|..+|++|++..+|+++++|+|+   +||||.
T Consensus        79 ii~G~-~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~--------~~E~~~~~~g~~~~~f~~~~~~ig~---~IC~d~  146 (253)
T cd07197          79 IVAGI-AEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD--------FGERRYFSPGDEFPVFDTPGGKIGL---LICYDL  146 (253)
T ss_pred             EEeee-EEccCCceEEEEEEECCCCeEEEEEEEeecCC--------CcccceecCCCCCceEEcCCceEEE---EEEecC
Confidence            99994 57778899999999999999999999999954        4788899999999999999999988   999998


Q ss_pred             ccc
Q 025863          244 IIH  246 (247)
Q Consensus       244 ~~~  246 (247)
                      ..+
T Consensus       147 ~~~  149 (253)
T cd07197         147 RFP  149 (253)
T ss_pred             CCc
Confidence            754

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.94  E-value=5.1e-26  Score=199.87  Aligned_cols=142  Identities=35%  Similarity=0.556  Sum_probs=121.7

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc---hhhhhhccCCCChHHHHHHHHHHHh
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP---VYAEDIDAGGDASPSTAMLSEVARL  159 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~---~~~e~~~~~~~~~~~~~~l~~~Ar~  159 (247)
                      |||++|+++. +|.++|++++.+++++|.   +|||||||++++||......   ..++..    ..++.++.++++|++
T Consensus         1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~~~----~~~~~~~~l~~~a~~   73 (259)
T cd07577           1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAESI----PDGPTTRFLQELARE   73 (259)
T ss_pred             CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhccc----CCChHHHHHHHHHHH
Confidence            6999999976 899999999999999883   99999999999999764322   122221    135789999999999


Q ss_pred             cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEeccccc
Q 025863          160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNGL  238 (247)
Q Consensus       160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~l  238 (247)
                      +++++++| +++++++++||++++|+++| ++..|+|+||++         .|..+|.+|+ +..+|+++++|+|+   +
T Consensus        74 ~~i~ii~G-~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~ig~---~  139 (259)
T cd07577          74 TGAYIVAG-LPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY---------EEKLFFEPGDTGFRVFDIGDIRIGV---M  139 (259)
T ss_pred             hCcEEEec-ceeccCCceEEEEEEECCCc-cEeeEeeccCCh---------hhhccccCCCCCCceEEeCCcEEEE---E
Confidence            99999999 67778889999999999999 999999999964         5788999999 68999999999988   9


Q ss_pred             eecccccc
Q 025863          239 ISFSQIIH  246 (247)
Q Consensus       239 ICyD~~~~  246 (247)
                      ||||...|
T Consensus       140 IC~D~~fp  147 (259)
T cd07577         140 ICFDWYFP  147 (259)
T ss_pred             EEcCcccc
Confidence            99998754

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=99.94  E-value=1.1e-25  Score=199.49  Aligned_cols=150  Identities=30%  Similarity=0.511  Sum_probs=127.1

Q ss_pred             ceEEEEEeccc-ccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHHHHHHHHHH
Q 025863           82 KFKVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        82 ~~kValvQ~~i-~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      .||||++|+++ ..|.++|++++.+++++|+++|||||||||++++||...+  +.......    ..++.++.++++++
T Consensus         2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~----~~~~~~~~l~~~a~   77 (274)
T COG0388           2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAE----AGEETLEFLAALAE   77 (274)
T ss_pred             ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhc----cCChHHHHHHHHHH
Confidence            58999999997 5999999999999999999999999999999999998875  11111211    13689999999999


Q ss_pred             hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC-eEEEeCCeEEecccc
Q 025863          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDTGLMFLLFYNG  237 (247)
Q Consensus       159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~-~vf~~~~grig~~~~  237 (247)
                      +.++++++|+.+++.  ..||++++++++|++++.|+|+|||+.      .+.|+.+|.+|++. .+|+++++|+|+   
T Consensus        78 ~~~~~ivg~~~~~~~--~~~~~~~~i~~~G~ii~~y~K~hl~~~------~~~e~~~~~~G~~~~~v~~~~~~kig~---  146 (274)
T COG0388          78 EGGVIIVGGPLPERE--KLYNNAALIDPDGEILGKYRKLHLFDA------FYEERRFFTPGDEGVVVFETDGGKIGL---  146 (274)
T ss_pred             hCCeEEEEeeeeccc--cceeeEEEEcCCCcEEeEEeeecCCCC------ccchhhhccCCCccceeEEeCCceEEE---
Confidence            888888888655544  899999999999999999999999762      35799999999987 599999999988   


Q ss_pred             ceecccccc
Q 025863          238 LISFSQIIH  246 (247)
Q Consensus       238 lICyD~~~~  246 (247)
                      +||||..-|
T Consensus       147 ~IC~D~~fP  155 (274)
T COG0388         147 LICYDLRFP  155 (274)
T ss_pred             EEEeeccCH
Confidence            999998643

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.93  E-value=3.2e-26  Score=202.73  Aligned_cols=170  Identities=38%  Similarity=0.490  Sum_probs=154.2

Q ss_pred             CCCCCCCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCC-CCcchhhhhhccCCCChHHH
Q 025863           73 LPLPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-DSFPVYAEDIDAGGDASPST  150 (247)
Q Consensus        73 ~~~~~~~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~-~~~~~~~e~~~~~~~~~~~~  150 (247)
                      .+.......++++|++|.... .+..+|++.++..+++|++.|++||||||.++.||.+ +.+..++|.+.+....++..
T Consensus         4 ~~~~~~~~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~   83 (298)
T KOG0806|consen    4 VYEHAVILPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSR   83 (298)
T ss_pred             ccccCCcccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhH
Confidence            345555677899999999987 5899999999999999999999999999999999999 88888888887533357999


Q ss_pred             HHHHHHHHhcCcEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCC
Q 025863          151 AMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGL  229 (247)
Q Consensus       151 ~~l~~~Ar~~~i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~  229 (247)
                      +.++++|+++++++++|++++.. +++.||++.+++++|+.++.|||.|||+.++|+...+.|...|.+|..++++++..
T Consensus        84 ~~ls~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~  163 (298)
T KOG0806|consen   84 QGLSEVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSY  163 (298)
T ss_pred             HHhHHHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCC
Confidence            99999999999999999887766 68999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeccccceeccccc
Q 025863          230 MFLLFYNGLISFSQII  245 (247)
Q Consensus       230 grig~~~~lICyD~~~  245 (247)
                      ||+|+   .||||-.-
T Consensus       164 gkfGi---~IC~Di~F  176 (298)
T KOG0806|consen  164 GKFGI---FICFDIRF  176 (298)
T ss_pred             CceEE---EEEecccc
Confidence            99988   99999753

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=99.93  E-value=2.7e-25  Score=199.38  Aligned_cols=145  Identities=21%  Similarity=0.304  Sum_probs=119.5

Q ss_pred             eEEEEEeccc-----ccCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHHHHH
Q 025863           83 FKVGLCQLSV-----TADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTAML  153 (247)
Q Consensus        83 ~kValvQ~~i-----~~d~~~n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~~~l  153 (247)
                      ++||++|+++     .+|.++|++++.+++++|++  .|+|||||||++++||..+.  ..+.++..     .++.++.+
T Consensus         1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~~-----~~~~~~~l   75 (291)
T cd07565           1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACTV-----PGPETDIF   75 (291)
T ss_pred             CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccCC-----CChhHHHH
Confidence            4799999997     37999999999999999986  59999999999999997532  22233322     35889999


Q ss_pred             HHHHHhcCcEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeC-
Q 025863          154 SEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTG-  228 (247)
Q Consensus       154 ~~~Ar~~~i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~-  228 (247)
                      +++|+++++++++| +.++++   +++||++++|+|+|+++.+|+|+|||.   |       ...|.+|++ ..+|++. 
T Consensus        76 ~~lA~~~~i~i~~g-~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~---~-------~e~~~~G~~~~~v~~~~~  144 (291)
T cd07565          76 AEACKEAKVWGVFS-IMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV---P-------IEPWYPGDLGTPVCEGPK  144 (291)
T ss_pred             HHHHHHCCeEEEEE-eeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC---C-------cccccCCCCCceeeECCC
Confidence            99999999999998 566653   689999999999999999999999953   1       224789997 8899986 


Q ss_pred             CeEEeccccceecccccc
Q 025863          229 LMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       229 ~grig~~~~lICyD~~~~  246 (247)
                      ++|+|+   +||||...|
T Consensus       145 g~riG~---~ICyD~~fP  159 (291)
T cd07565         145 GSKIAL---IICHDGMYP  159 (291)
T ss_pred             CCEEEE---EEEcCCCCc
Confidence            559988   999998654

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.93  E-value=2.1e-25  Score=196.67  Aligned_cols=146  Identities=27%  Similarity=0.355  Sum_probs=120.4

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc-hhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLK  161 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~-~~~e~~~~~~~~~~~~~~l~~~Ar~~~  161 (247)
                      |||++|++.. +|.++|++++++++++|+++|+|||||||++++||...+.. +.+..     ..++.++.|++.++  +
T Consensus         1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~--~   73 (269)
T cd07586           1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVAMH-----ADDPRLQALAEASG--G   73 (269)
T ss_pred             CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhhcc-----cchHHHHHHHHHcC--C
Confidence            6999999976 89999999999999999999999999999999999865421 11111     12466777777763  7


Q ss_pred             cEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEecccccee
Q 025863          162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLIS  240 (247)
Q Consensus       162 i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lIC  240 (247)
                      +++++|+ ++.. ++++||++++| ++|+++++|+|+||+.     ...+.|..+|++|++..+|+++++|+|+   +||
T Consensus        74 ~~ii~G~-~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~-----~~~~~e~~~~~~G~~~~vf~~~~~~ig~---~IC  143 (269)
T cd07586          74 ICVVFGF-VEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPT-----YGLFEEGRYFAPGSHLRAFDTRFGRAGV---LIC  143 (269)
T ss_pred             CEEEEeC-eEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCC-----CCccceeeeecCCCcceEEEeCCeEEEE---EEE
Confidence            9999995 5555 58999999999 8999999999999843     2345788899999999999999999988   999


Q ss_pred             cccccc
Q 025863          241 FSQIIH  246 (247)
Q Consensus       241 yD~~~~  246 (247)
                      ||...+
T Consensus       144 ~D~~fp  149 (269)
T cd07586         144 EDAWHP  149 (269)
T ss_pred             eccCCc
Confidence            998754

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=99.93  E-value=3.1e-25  Score=199.52  Aligned_cols=150  Identities=23%  Similarity=0.316  Sum_probs=116.4

Q ss_pred             EEEEEecccc-cCHHHHHHHHHHHHHHHHH----CCCeEEEcCCCCCCCCCCCCcc---hhhhhhccCCCChHHHHHHHH
Q 025863           84 KVGLCQLSVT-ADKERNIAHARRAIEEAAE----KGAKLILLPEIWNSPYSHDSFP---VYAEDIDAGGDASPSTAMLSE  155 (247)
Q Consensus        84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~----~gadLVVfPE~~l~g~~~~~~~---~~~e~~~~~~~~~~~~~~l~~  155 (247)
                      |||++|+++. +|.++|++++++++++|++    .++|||||||++++||...+..   .+++...    .++..+.+++
T Consensus         1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~----~g~~~~~l~~   76 (295)
T cd07566           1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTT----SGPSFEWARE   76 (295)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcC----CCHHHHHHHH
Confidence            6999999976 8999999999999999988    8999999999999999765432   2222221    3588999999


Q ss_pred             HHHhcCcEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccc-cccc------cCCCCe--
Q 025863          156 VARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIES-KSLT------AGETPT--  223 (247)
Q Consensus       156 ~Ar~~~i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~-~~f~------~G~~~~--  223 (247)
                      +|++++++|++| ++++.+   +++|||+++|+|+|+++++|+|+|||+++.+  ..+.|. .+|.      +|++..  
T Consensus        77 lAk~~~i~Iv~G-~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~--~~~~e~~~~~~~~~~~~~G~~~~~~  153 (295)
T cd07566          77 VAKKFNCHVVIG-YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEE--WGCEENPGGFQTFPLPFAKDDDFDG  153 (295)
T ss_pred             HHHhcCCEEEEe-eeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcc--cccCCCCCccccccccccccccccc
Confidence            999999999999 556543   4899999999999999999999999875321  011222 1222      777643  


Q ss_pred             EEEeCCeEEeccccceeccc
Q 025863          224 IVDTGLMFLLFYNGLISFSQ  243 (247)
Q Consensus       224 vf~~~~grig~~~~lICyD~  243 (247)
                      ++.+.++|+|+   +||||.
T Consensus       154 ~~~~~~~kiG~---~ICyDl  170 (295)
T cd07566         154 GSVDVTLKTSI---GICMDL  170 (295)
T ss_pred             cccCCcceeEE---EEEecC
Confidence            23445789988   999997

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=99.93  E-value=1.9e-25  Score=198.10  Aligned_cols=145  Identities=20%  Similarity=0.295  Sum_probs=122.0

Q ss_pred             eEEEEEecccc-c------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHH
Q 025863           83 FKVGLCQLSVT-A------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE  155 (247)
Q Consensus        83 ~kValvQ~~i~-~------d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~  155 (247)
                      +|||++|+++. .      |.++|++++.+++++|+++|+|||||||++++||..         .     .++.++.+++
T Consensus         1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~---------~-----~~~~~~~l~~   66 (270)
T cd07571           1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ---------R-----DPDALARLAR   66 (270)
T ss_pred             CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc---------c-----CHHHHHHHHH
Confidence            58999999975 3      789999999999999999999999999999999851         1     2488999999


Q ss_pred             HHHhcCcEEEEeeeeeecC--CeeEEEEEEEccCCcEEEEEeccccCCCC--CCCCcc--------cccccccccCCCCe
Q 025863          156 VARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKIT--------FIESKSLTAGETPT  223 (247)
Q Consensus       156 ~Ar~~~i~Iv~Gs~~e~~~--~~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~--------~~E~~~f~~G~~~~  223 (247)
                      +|+++++++++| ..++++  +++||++++|+|+|+++.+|+|+||++++  .|....        ..|..+|.+|++..
T Consensus        67 ~ak~~~i~ii~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~  145 (270)
T cd07571          67 AARAVGAPLLTG-APRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQ  145 (270)
T ss_pred             HHHhcCCeEEEe-eeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCCC
Confidence            999999999999 455554  48999999999999999999999997653  111100        14778899999999


Q ss_pred             EEEeCC-eEEeccccceeccccc
Q 025863          224 IVDTGL-MFLLFYNGLISFSQII  245 (247)
Q Consensus       224 vf~~~~-grig~~~~lICyD~~~  245 (247)
                      +|++++ +|+|+   +||||..-
T Consensus       146 vf~~~~~~r~g~---~IC~D~~f  165 (270)
T cd07571         146 PLLLGGGVRVGP---LICYESIF  165 (270)
T ss_pred             ccccCCCceEEE---EEEeeeeC
Confidence            999999 99988   99999754

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>PRK13981 NAD synthetase; Provisional

Probab=99.92  E-value=1.1e-24  Score=210.50  Aligned_cols=148  Identities=27%  Similarity=0.364  Sum_probs=124.6

Q ss_pred             eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHh--
Q 025863           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL--  159 (247)
Q Consensus        83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~--  159 (247)
                      ||||++|+++. +|.+.|++++.+++++|+++|+|||||||++++||...++....+..      ....+.+.+++++  
T Consensus         1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~------~~~~~~l~~La~~~~   74 (540)
T PRK13981          1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL------AACEAALERLAAATA   74 (540)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH------HHHHHHHHHHHHhcC
Confidence            69999999975 89999999999999999999999999999999999875532222211      2344566777766  


Q ss_pred             cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccce
Q 025863          160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLI  239 (247)
Q Consensus       160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lI  239 (247)
                      +++++++| .++++++++||++++|+ +|++++.|+|+||+++     ..|.|..+|++|++..+|+++++|+|+   +|
T Consensus        75 ~~i~ii~G-~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~-----~~~~E~~~f~~G~~~~~~~~~g~rigv---~I  144 (540)
T PRK13981         75 GGPAVLVG-HPWREGGKLYNAAALLD-GGEVLATYRKQDLPNY-----GVFDEKRYFAPGPEPGVVELKGVRIGV---PI  144 (540)
T ss_pred             CCCEEEEe-CcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCC-----CCcCccccccCCCCceEEEECCEEEEE---EE
Confidence            79999999 56778889999999997 7999999999999654     256899999999999999999999988   99


Q ss_pred             ecccccc
Q 025863          240 SFSQIIH  246 (247)
Q Consensus       240 CyD~~~~  246 (247)
                      |||...+
T Consensus       145 C~D~~~p  151 (540)
T PRK13981        145 CEDIWNP  151 (540)
T ss_pred             ehhhcCC
Confidence            9998654

>PRK02628 nadE NAD synthetase; Reviewed

Probab=99.92  E-value=1.5e-24  Score=214.28  Aligned_cols=152  Identities=25%  Similarity=0.279  Sum_probs=127.4

Q ss_pred             CceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHh
Q 025863           81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL  159 (247)
Q Consensus        81 ~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~  159 (247)
                      ..||||++|+++. +|++.|++++.+++++|+++|||||||||++++||...+........+.   ..+.++.|++.+++
T Consensus        11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~---~~~~l~~L~~~a~~   87 (679)
T PRK02628         11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA---VEDALATLVEASAD   87 (679)
T ss_pred             CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh---hHHHHHHHHHHHhh
Confidence            4699999999987 8999999999999999999999999999999999987664322222211   24788899999999


Q ss_pred             cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC-----------------
Q 025863          160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-----------------  222 (247)
Q Consensus       160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~-----------------  222 (247)
                      +++++++| ++++.++++||++++|. +|++++.|+|+||+.+     ..|+|+++|++|+..                 
T Consensus        88 ~~i~ivvG-~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~-----~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~  160 (679)
T PRK02628         88 LDPLLVVG-APLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNY-----REFYEKRWFAPGDGARGETIRLCGQEVPFGTD  160 (679)
T ss_pred             cCEEEEEe-eEEEECCEEEEEEEEEc-CCEEEEEeccccCCCC-----CcccccccccCCCCCCCceEeecCeeeccCCc
Confidence            99999999 77777889999999997 7999999999999553     468899999999873                 


Q ss_pred             eEEEe---CCeEEeccccceeccccc
Q 025863          223 TIVDT---GLMFLLFYNGLISFSQII  245 (247)
Q Consensus       223 ~vf~~---~~grig~~~~lICyD~~~  245 (247)
                      .+|++   +++++|+   .||||.+-
T Consensus       161 ~vf~~~~~~g~kiGv---~IC~Dlwf  183 (679)
T PRK02628        161 LLFEAEDLPGFVFGV---EICEDLWV  183 (679)
T ss_pred             eeEEecccCCcEEEE---EEeccccc
Confidence            24655   5889988   99999864

>PRK13287 amiF formamidase; Provisional

Probab=99.92  E-value=5.3e-24  Score=194.49  Aligned_cols=150  Identities=22%  Similarity=0.339  Sum_probs=121.3

Q ss_pred             CCCCceEEEEEecccc-----cCHHHHHHHHHHHHHHHHHC--CCeEEEcCCCCCCCCCCCCcc--hhhhhhccCCCChH
Q 025863           78 PPVAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFP--VYAEDIDAGGDASP  148 (247)
Q Consensus        78 ~~~~~~kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~~--gadLVVfPE~~l~g~~~~~~~--~~~e~~~~~~~~~~  148 (247)
                      +..+.+|||++|+++.     .|.++|++++.+++++|++.  |+|||||||++++||..+.+.  +.+..+     +++
T Consensus         9 ~~~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~-----~g~   83 (333)
T PRK13287          9 KPIEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWTTEEFLCTV-----DGP   83 (333)
T ss_pred             CCCCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccchhhhcccC-----CCH
Confidence            4456799999999963     78999999999999999864  899999999999999766432  222222     358


Q ss_pred             HHHHHHHHHHhcCcEEEEeeeeeec-CC-eeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEE
Q 025863          149 STAMLSEVARLLKITIVGGSIPERS-GD-RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIV  225 (247)
Q Consensus       149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~-~~-~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf  225 (247)
                      .++.++++|+++++++++| +.++. ++ ++|||+++|+|+|+++.+|+|+||+.   |       ...|.+|+ ..++|
T Consensus        84 ~~~~l~~~a~~~~i~~~~g-~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~---p-------~~~~~pG~~~~~v~  152 (333)
T PRK13287         84 EVDAFAQACKENKVWGVFS-IMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV---P-------VEPWEPGDLGIPVC  152 (333)
T ss_pred             HHHHHHHHHHHcCeEEEEe-eEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC---c-------cccccCCCCCCceE
Confidence            8999999999999999998 44554 33 39999999999999999999999853   2       13478998 57899


Q ss_pred             EeCC-eEEeccccceecccccc
Q 025863          226 DTGL-MFLLFYNGLISFSQIIH  246 (247)
Q Consensus       226 ~~~~-grig~~~~lICyD~~~~  246 (247)
                      +++. .|+|+   +||||..-|
T Consensus       153 ~~~~g~kiG~---~ICyD~~fP  171 (333)
T PRK13287        153 DGPGGSKLAV---CICHDGMFP  171 (333)
T ss_pred             ECCCCceEEE---EEEecccch
Confidence            9874 59988   999998754

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=99.92  E-value=2.2e-24  Score=213.35  Aligned_cols=154  Identities=18%  Similarity=0.100  Sum_probs=121.8

Q ss_pred             CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        80 ~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      |+.||||++|++++ +|++.|++++.+.+++|+++|||||||||++++||.+.+.....+.++.   ..+.++.+.+.++
T Consensus         1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~---~~~~L~~La~~a~   77 (700)
T PLN02339          1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTH---SWECLAEILVGDL   77 (700)
T ss_pred             CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHH---HHHHHHHHHhhcc
Confidence            34799999999987 7999999999999999999999999999999999987553222222211   1245555555556


Q ss_pred             hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC---Ce------------
Q 025863          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET---PT------------  223 (247)
Q Consensus       159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~---~~------------  223 (247)
                      ++++.+++| +++..++++||+++++. +|++++.|+|+||+++     ..|+|+++|++|++   ..            
T Consensus        78 ~~~i~vvvG-~p~~~~~~lYN~a~vi~-~GkIlg~y~K~hLpny-----~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~  150 (700)
T PLN02339         78 TDGILCDIG-MPVIHGGVRYNCRVFCL-NRKILLIRPKMWLAND-----GNYRELRWFTAWKHKKKVEDFQLPEEIAEAT  150 (700)
T ss_pred             cCCeEEEEe-eeEEECCeEEEEEEEEe-CCEEEEEEecccCCCC-----CccccccccccCccCCcceeeccccchhhcc
Confidence            789999999 67777789999999995 7999999999999654     46899999999862   22            


Q ss_pred             ----------EEEeCCeEEeccccceecccccc
Q 025863          224 ----------IVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       224 ----------vf~~~~grig~~~~lICyD~~~~  246 (247)
                                +|++++.++|+   .||||.+-|
T Consensus       151 g~~~vpfg~~~~~~~g~~iGv---~ICeDlwfP  180 (700)
T PLN02339        151 SQKSVPFGDGYLQFLDTAVAA---ETCEELFTP  180 (700)
T ss_pred             CCceeccCcceeecCCeEEEE---EEecccCCC
Confidence                      33455678877   999998754

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.91  E-value=1.2e-23  Score=188.47  Aligned_cols=153  Identities=24%  Similarity=0.253  Sum_probs=117.5

Q ss_pred             EEEEEecccc-----cCHHHHHHHHHHHHHHHHH-----CCCeEEEcCCCCCCCCCCCCcc------hhhhhhccCCCCh
Q 025863           84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE-----KGAKLILLPEIWNSPYSHDSFP------VYAEDIDAGGDAS  147 (247)
Q Consensus        84 kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~-----~gadLVVfPE~~l~g~~~~~~~------~~~e~~~~~~~~~  147 (247)
                      +++.+|....     +|+++|++++.+++++|++     +|+|||||||++++||...+..      +.++.+     ++
T Consensus         2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~-----~~   76 (294)
T cd07582           2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDI-----PG   76 (294)
T ss_pred             eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccC-----CC
Confidence            4677888742     7999999999999999986     4799999999999999865432      112222     46


Q ss_pred             HHHHHHHHHHHhcCcEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCC---CCCCccccc-ccccccC-
Q 025863          148 PSTAMLSEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDID---IPGKITFIE-SKSLTAG-  219 (247)
Q Consensus       148 ~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~---vP~~~~~~E-~~~f~~G-  219 (247)
                      +.++.|+++|++++++|++|+ .++++   +++||++++|+|+|+++++|+|+||+..+   +|. ..+.| ..++.+| 
T Consensus        77 ~~~~~l~~~A~~~~i~iv~G~-~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~-~~~~~~~~~~g~g~  154 (294)
T cd07582          77 PETEALGEKAKELNVYIAANA-YERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPH-DVWDEYIEVYGYGL  154 (294)
T ss_pred             HHHHHHHHHHHHcCEEEEEee-eeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCcc-chhhhhcccCCCcc
Confidence            899999999999999999995 45543   68999999999999999999999997521   111 01122 1234555 


Q ss_pred             C-CCeEEEeCCeEEeccccceecccccc
Q 025863          220 E-TPTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       220 ~-~~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                      + .+.+++++++|+|+   +||||...|
T Consensus       155 ~~~~~v~~~~~~~iG~---~ICyD~~fp  179 (294)
T cd07582         155 DALFPVADTEIGNLGC---LACEEGLYP  179 (294)
T ss_pred             cccceeecCCCceEEE---EEeecccCh
Confidence            3 36889999999988   999997643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.91  E-value=1.1e-24  Score=186.27  Aligned_cols=154  Identities=33%  Similarity=0.417  Sum_probs=134.5

Q ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCC-CCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863           83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNS-PYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK  161 (247)
Q Consensus        83 ~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~-g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~  161 (247)
                      .+||++|+....|..+|+....+++.+|++.||++|.|||.+-- |-....-.++++.+     +++++++++++|+++|
T Consensus        16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l-----~~k~m~~y~elar~~n   90 (295)
T KOG0807|consen   16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPL-----DGKFMEQYRELARSHN   90 (295)
T ss_pred             ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceeccccc-----ChHHHHHHHHHHHhcC
Confidence            78999999999999999999999999999999999999998752 11222223455554     3799999999999999


Q ss_pred             cEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC-eEEEeCCeEEecccc
Q 025863          162 ITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDTGLMFLLFYNG  237 (247)
Q Consensus       162 i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~-~vf~~~~grig~~~~  237 (247)
                      ||+.+|...++.+   .+++|+.++|+.+|+++..|+|+|||+++|||+....|+.+-.||+.. +.++++.||+|.   
T Consensus        91 IwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGl---  167 (295)
T KOG0807|consen   91 IWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGL---  167 (295)
T ss_pred             eeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccce---
Confidence            9998886666654   689999999999999999999999999999999999999999999984 679999999988   


Q ss_pred             ceecccc
Q 025863          238 LISFSQI  244 (247)
Q Consensus       238 lICyD~~  244 (247)
                      .||||.=
T Consensus       168 aICYDiR  174 (295)
T KOG0807|consen  168 AICYDIR  174 (295)
T ss_pred             eeeeecc
Confidence            9999953

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=99.91  E-value=1.2e-23  Score=193.01  Aligned_cols=149  Identities=19%  Similarity=0.180  Sum_probs=118.5

Q ss_pred             CCceEEEEEecccc-----cCHHHHHHHHHHHHHHHH--HCCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHH
Q 025863           80 VAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAA--EKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPST  150 (247)
Q Consensus        80 ~~~~kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa--~~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~  150 (247)
                      ...++||++|++++     .|..+|++++.+++++|+  ..++|||||||++++||..+.  ..+.+..+     +++..
T Consensus        10 ~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~i-----~g~~~   84 (345)
T PRK13286         10 NDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETASTI-----PGEET   84 (345)
T ss_pred             CCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhcccC-----CCHHH
Confidence            34699999999843     688999999999999886  358999999999999965432  22223333     36889


Q ss_pred             HHHHHHHHhcCcEEEEeeeeee----cCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEE
Q 025863          151 AMLSEVARLLKITIVGGSIPER----SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVD  226 (247)
Q Consensus       151 ~~l~~~Ar~~~i~Iv~Gs~~e~----~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~  226 (247)
                      +.++++|+++++++++|...++    .++++|||+++|+++|+++.+|+|+|+|.          +...|.+|+...+|+
T Consensus        85 ~~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~----------~~e~~~pG~~~~v~~  154 (345)
T PRK13286         85 AIFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC----------PIEGWYPGDCTYVSE  154 (345)
T ss_pred             HHHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc----------hhhceecCCCCEEEe
Confidence            9999999999999988733233    13569999999999999999999999853          234578999988999


Q ss_pred             eCCe-EEeccccceecccccc
Q 025863          227 TGLM-FLLFYNGLISFSQIIH  246 (247)
Q Consensus       227 ~~~g-rig~~~~lICyD~~~~  246 (247)
                      ++.| |+|+   +||||...|
T Consensus       155 ~~~G~kiG~---lIC~D~~fP  172 (345)
T PRK13286        155 GPKGLKISL---IICDDGNYP  172 (345)
T ss_pred             CCCCcEEEE---EEEecccCh
Confidence            8755 9988   999998643

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.89  E-value=1e-22  Score=174.87  Aligned_cols=153  Identities=29%  Similarity=0.403  Sum_probs=132.2

Q ss_pred             CCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC----------------cch-hhhhh
Q 025863           79 PVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS----------------FPV-YAEDI  140 (247)
Q Consensus        79 ~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~----------------~~~-~~e~~  140 (247)
                      .++..||+++|.... .|..+.++++++++.+|++.|++||||||.++.||+...                +.. .++.+
T Consensus        14 ~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI   93 (337)
T KOG0805|consen   14 SSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI   93 (337)
T ss_pred             cccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence            456799999999865 788899999999999999999999999999999997542                111 22333


Q ss_pred             ccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC
Q 025863          141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE  220 (247)
Q Consensus       141 ~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~  220 (247)
                      +   ..++..++|..+|+++++++++| ..|+++-.+|.|+++|+|+|..++++||+.+         +-.|+-.|..|+
T Consensus        94 e---v~gpEv~~l~~la~~~~v~lv~G-~iEreg~TLYCt~~f~~p~g~~lGKHRKlmP---------TalERciWGqGD  160 (337)
T KOG0805|consen   94 E---VPGPEVERLAELAKKNNVYLVMG-AIEREGYTLYCTVLFFSPQGQFLGKHRKLMP---------TALERCIWGQGD  160 (337)
T ss_pred             c---CCChHHHHHHHHhhcCCeEEEEE-EEeccccEEEEEEEEECCCcccccccccccc---------chhhheeeccCC
Confidence            3   45799999999999999999999 6799999999999999999999999999987         347888888776


Q ss_pred             C--CeEEEeCCeEEeccccceeccccccC
Q 025863          221 T--PTIVDTGLMFLLFYNGLISFSQIIHL  247 (247)
Q Consensus       221 ~--~~vf~~~~grig~~~~lICyD~~~~~  247 (247)
                      +  .+||+|+.|+||-   +||||+.|||
T Consensus       161 GSTiPV~dT~iGKIG~---AICWEN~MPl  186 (337)
T KOG0805|consen  161 GSTIPVYDTPIGKIGA---AICWENRMPL  186 (337)
T ss_pred             Ccccceeecccchhce---eeecccccHH
Confidence            5  7999999999966   9999999986

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=99.88  E-value=1.8e-22  Score=187.73  Aligned_cols=148  Identities=19%  Similarity=0.260  Sum_probs=116.9

Q ss_pred             CceEEEEEeccccc-------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHH
Q 025863           81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML  153 (247)
Q Consensus        81 ~~~kValvQ~~i~~-------d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l  153 (247)
                      +++||+++|.++..       +.++|++++.+++++|.+ ++|+|||||+++++|..+.             .....+.+
T Consensus       158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l  223 (391)
T TIGR00546       158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL  223 (391)
T ss_pred             CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence            35899999999863       367899999999998876 8999999999998874221             12467889


Q ss_pred             HHHHHhcCcEEEEeeeeeecC-C--eeEEEEEEEccCCcEEEEEeccccCCCC--CCCCccc------cc---ccccccC
Q 025863          154 SEVARLLKITIVGGSIPERSG-D--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF------IE---SKSLTAG  219 (247)
Q Consensus       154 ~~~Ar~~~i~Iv~Gs~~e~~~-~--~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~------~E---~~~f~~G  219 (247)
                      +++++++++++++|+ .+.++ +  ++||++++++|+|+++.+|+|+||++++  +|.+..+      .+   ...|++|
T Consensus       224 ~~~a~~~~~~ii~G~-~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G  302 (391)
T TIGR00546       224 KLLVLSKGIPILIGA-PDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRG  302 (391)
T ss_pred             HHHHHhCCCEEEEec-ccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCC
Confidence            999999999999995 44333 3  7999999999999999999999997764  3311110      01   2478999


Q ss_pred             CCCeEEEeCCeEEeccccceecccccc
Q 025863          220 ETPTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       220 ~~~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                      ++..+++++++|+|+   +||||..-+
T Consensus       303 ~~~~~~~~~~~~~g~---~ICyE~~fp  326 (391)
T TIGR00546       303 PGPQVLKLPGGKIAP---LICYESIFP  326 (391)
T ss_pred             CCCCCCcCCCceeee---eEEeehhch
Confidence            999999999999977   999998653

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.87  E-value=5.8e-22  Score=171.38  Aligned_cols=195  Identities=25%  Similarity=0.376  Sum_probs=161.9

Q ss_pred             cceeccCCCCccCChhhhhhcCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCceEEEEEecccc--------cCHHHH
Q 025863           28 RSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT--------ADKERN   99 (247)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kValvQ~~i~--------~d~~~n   99 (247)
                      +|++||++-+.+.+|.   .+     -..++...|..+.+.+... .+.....+.++|+++|..+.        ....+.
T Consensus        28 ~r~lygr~lr~l~lp~---~a-----~~las~~df~lqgy~f~a~-keq~r~pr~vrvgliqn~i~lpttapv~eq~~ai   98 (387)
T KOG0808|consen   28 NRLLYGRSLRQLVLPE---SA-----KALASKHDFDLQGYSFSAD-KEQMRNPRVVRVGLIQNSIALPTTAPVSEQTRAI   98 (387)
T ss_pred             HHHHhCCchhhhcCch---HH-----HHhhcccCcceeeeeeccc-hhhhcCCcEEEEeeecccccCCCCCcHHHHHHHH
Confidence            6899999999999998   44     4457788899998888655 44444556799999999874        134556


Q ss_pred             HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCC-----CcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-
Q 025863          100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHD-----SFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-  173 (247)
Q Consensus       100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~-----~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-  173 (247)
                      .+++...|+.|+..|+++++|.|.|..+|.+.     .|.+++|..+    +++..+.++++|+++++.|+-. +.|++ 
T Consensus        99 h~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~----~gptt~flqklakkhdmvivsp-ilerd~  173 (387)
T KOG0808|consen   99 HDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVD----TGPTTKFLQKLAKKHDMVIVSP-ILERDI  173 (387)
T ss_pred             HHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccc----cCchHHHHHHHHhhCCeEEEeh-hhhccc
Confidence            77888889999999999999999999987543     2566777776    4699999999999999999876 77776 


Q ss_pred             --CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceecccc
Q 025863          174 --GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISFSQI  244 (247)
Q Consensus       174 --~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICyD~~  244 (247)
                        ++-++||+++|+.+|+++++.||.|.     |-..+|.|+.++..|+- .+||+|..|||++   -|||-.-
T Consensus       174 ehgdvlwntavvisn~g~vigk~rknhi-----prvgdfnestyymeg~lghpvfet~fgriav---nicygrh  239 (387)
T KOG0808|consen  174 EHGDVLWNTAVVISNNGNVIGKHRKNHI-----PRVGDFNESTYYMEGDLGHPVFETVFGRIAV---NICYGRH  239 (387)
T ss_pred             ccCceeeeeeEEEccCCceecccccccC-----CcccccCcceeEeecCCCCceeeeecceEEE---EeeccCC
Confidence              56799999999999999999999997     44469999999999984 8999999999988   9999653

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=99.85  E-value=1.1e-20  Score=177.36  Aligned_cols=141  Identities=19%  Similarity=0.252  Sum_probs=111.3

Q ss_pred             eEEEEEecccccC-------HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHH
Q 025863           83 FKVGLCQLSVTAD-------KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE  155 (247)
Q Consensus        83 ~kValvQ~~i~~d-------~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~  155 (247)
                      .+|+++|.|+.++       .+++++++.+++++|.+.++|+|||||.+++.+...              .++..+.+++
T Consensus       195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~  260 (418)
T PRK12291        195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE  260 (418)
T ss_pred             CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence            4999999998743       367899999999998888999999999998754211              1246677777


Q ss_pred             HHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCC--CCCCc---------ccccccccccCCCCeE
Q 025863          156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKI---------TFIESKSLTAGETPTI  224 (247)
Q Consensus       156 ~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~---------~~~E~~~f~~G~~~~v  224 (247)
                      .+  .++.+++|+ .+.+++++|||++++++ |+ +..|+|.||++++  +|-+.         .+.|...|++|++..+
T Consensus       261 ~~--~~~~ii~G~-~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~  335 (418)
T PRK12291        261 LS--HKITIITGA-LRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKFSD  335 (418)
T ss_pred             hc--cCCcEEEee-eeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCCcc
Confidence            74  578999994 45566789999999975 77 6899999998775  45211         1356678999999999


Q ss_pred             EEeCCeEEeccccceeccccc
Q 025863          225 VDTGLMFLLFYNGLISFSQII  245 (247)
Q Consensus       225 f~~~~grig~~~~lICyD~~~  245 (247)
                      +++++.|+|.   +||||.+-
T Consensus       336 ~~~~g~~ig~---lICYE~~F  353 (418)
T PRK12291        336 FTLDGVKFRN---AICYEATS  353 (418)
T ss_pred             eeeCCeEEEE---EEeeeecc
Confidence            9999999977   99999864

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=99.84  E-value=5.5e-21  Score=183.35  Aligned_cols=147  Identities=20%  Similarity=0.228  Sum_probs=112.7

Q ss_pred             ceEEEEEeccccc-------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHH
Q 025863           82 KFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLS  154 (247)
Q Consensus        82 ~~kValvQ~~i~~-------d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~  154 (247)
                      ++||+++|.++..       +.++|++++.++++++ ++++|+|||||.+++++..++             .++..+.++
T Consensus       219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~~~~-------------~~~~~~~l~  284 (505)
T PRK00302        219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLLEDL-------------PQAFLKALD  284 (505)
T ss_pred             CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCcccccccccc-------------cHHHHHHHH
Confidence            5899999999863       4678899999998854 578999999999987652110             135677899


Q ss_pred             HHHHhcCcEEEEeeeeeec--CC-eeEEEEEEEccCCcEEEEEeccccCCCC--CCCCccc--------ccccccccCC-
Q 025863          155 EVARLLKITIVGGSIPERS--GD-RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF--------IESKSLTAGE-  220 (247)
Q Consensus       155 ~~Ar~~~i~Iv~Gs~~e~~--~~-~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~--------~E~~~f~~G~-  220 (247)
                      ++++++++++++|+..+.+  ++ ++||+++++++ |+++.+|+|+||++++  +|.+..+        .+...|++|+ 
T Consensus       285 ~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~  363 (505)
T PRK00302        285 DLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPY  363 (505)
T ss_pred             HHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCC
Confidence            9999999999999543222  23 69999999998 7799999999997664  3322111        1123689998 


Q ss_pred             CCeEEEeCCeEEeccccceecccccc
Q 025863          221 TPTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       221 ~~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                      +..+++++++|+|+   +||||...|
T Consensus       364 ~~~v~~~~~~~ig~---~ICyE~~fp  386 (505)
T PRK00302        364 VQPPLLAKGLKLAP---LICYEIIFP  386 (505)
T ss_pred             CCCCcccCCceEEE---EEeehhcCh
Confidence            78899999999988   999998754

>PRK13825 conjugal transfer protein TraB; Provisional

Probab=99.74  E-value=3.1e-17  Score=152.60  Aligned_cols=140  Identities=14%  Similarity=0.095  Sum_probs=103.2

Q ss_pred             EEEEEecccccC-----HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863           84 KVGLCQLSVTAD-----KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        84 kValvQ~~i~~d-----~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      ++-.+++++.++     ..+...++.+.+++|.+.++|+|||||+++++|....              ..   .+.+.++
T Consensus       187 ~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~--------------~~---~~~~~l~  249 (388)
T PRK13825        187 GWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT--------------ER---LWRESLR  249 (388)
T ss_pred             CeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc--------------cH---HHHHHHH
Confidence            677788876522     1244556677777778889999999999998874211              01   2355568


Q ss_pred             hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCC--CCCCcccccccccccCC-CCeEEEeCCeEEecc
Q 025863          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFIESKSLTAGE-TPTIVDTGLMFLLFY  235 (247)
Q Consensus       159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~  235 (247)
                      ++++.+++|+ .+++++++||++++++++|.+ ..|+|+||++++  +|....+.|..++.+|. +..+|++++.|+|. 
T Consensus       250 ~~~i~II~G~-~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~-  326 (388)
T PRK13825        250 GSDVTVIAGA-AVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAP-  326 (388)
T ss_pred             hCCCeEEEEe-eecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEE-
Confidence            9999999995 456778899999999998864 599999997764  34222234777788774 34689999999987 


Q ss_pred             ccceeccccc
Q 025863          236 NGLISFSQII  245 (247)
Q Consensus       236 ~~lICyD~~~  245 (247)
                        +||||...
T Consensus       327 --lICYE~~F  334 (388)
T PRK13825        327 --LICYEQLL  334 (388)
T ss_pred             --EEeeeecC
Confidence              99999864

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=2.1e-15  Score=145.02  Aligned_cols=149  Identities=19%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             CCceEEEEEeccccc----CHHHHHHHHHHHHHH---HH--HCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHH
Q 025863           80 VAKFKVGLCQLSVTA----DKERNIAHARRAIEE---AA--EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPST  150 (247)
Q Consensus        80 ~~~~kValvQ~~i~~----d~~~n~~~i~~~i~~---Aa--~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~  150 (247)
                      ...++|+++|.++++    |.++..+.+...+..   +.  ..++|+|||||.+++-..        +..      .+..
T Consensus       225 ~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~--------~~~------~~~~  290 (518)
T COG0815         225 EPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDL--------TRH------PDAL  290 (518)
T ss_pred             CCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccch--------hhc------chHH
Confidence            345999999999873    344433333333322   22  378999999999986221        111      1335


Q ss_pred             HHHHHHHHhcCcEEEEeeeeee--cCC--eeEEEEEEEccCCcEEEEEeccccCCCC--CCCCcccc--------ccccc
Q 025863          151 AMLSEVARLLKITIVGGSIPER--SGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFI--------ESKSL  216 (247)
Q Consensus       151 ~~l~~~Ar~~~i~Iv~Gs~~e~--~~~--~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~~--------E~~~f  216 (247)
                      .++.+.+++.|+.+++| ..+.  .++  ++|||+++++++|+++.+|+|.||.||+  +|.+.-+.        ....|
T Consensus       291 ~~~~~~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f  369 (518)
T COG0815         291 ARLAEALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDF  369 (518)
T ss_pred             HHHHHHHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccc
Confidence            66888888999999999 3332  233  4899999999999999999999998776  44221110        12357


Q ss_pred             ccCCCCeEEEeCCe-EEeccccceecccccc
Q 025863          217 TAGETPTIVDTGLM-FLLFYNGLISFSQIIH  246 (247)
Q Consensus       217 ~~G~~~~vf~~~~g-rig~~~~lICyD~~~~  246 (247)
                      .+|+...++.+.++ +++.   +||||++-+
T Consensus       370 ~~G~~~~v~~~~~~~~~~~---~ICYE~~F~  397 (518)
T COG0815         370 SRGPGPQVLLLAGGPKIAP---LICYEAIFP  397 (518)
T ss_pred             cCCCCCcceecCCCceeec---eeeehhhch
Confidence            78999988888876 5866   999999753

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=98.81  E-value=1.2e-08  Score=95.72  Aligned_cols=131  Identities=26%  Similarity=0.298  Sum_probs=106.1

Q ss_pred             CCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHH
Q 025863           79 PVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA  157 (247)
Q Consensus        79 ~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~A  157 (247)
                      |++.++||.+++|.| .|.+.|.++|.+.|++|++.||.+-+=||+-.+||.+.+...-.+...      ..-+.+.++.
T Consensus         1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~------HswE~l~~l~   74 (706)
T KOG2303|consen    1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLL------HSWEMLAELV   74 (706)
T ss_pred             CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHH------HHHHHHHHHH
Confidence            456799999999998 799999999999999999999999999999999999876322222221      3445566665


Q ss_pred             H---hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC
Q 025863          158 R---LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP  222 (247)
Q Consensus       158 r---~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~  222 (247)
                      .   ..++.+.+| +|....+-.||+.+++- +|+|+....|+-|.+     ...++|.+||++=.+.
T Consensus        75 ~~~~~~~il~diG-mPv~hr~~ryNCrv~~~-n~kil~IRpKm~lan-----DgnyRE~RwFt~W~~~  135 (706)
T KOG2303|consen   75 ESPVTQDILCDIG-MPVMHRNVRYNCRVLFL-NRKILLIRPKMWLAN-----DGNYRESRWFTPWTRP  135 (706)
T ss_pred             cCCCCCCeeEecC-Cchhhhhhhhccceeec-CCeEEEEcccceecc-----CCCchhhccccccccc
Confidence            3   347888999 89988999999999884 899999999999954     3578999999875543

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=86.96  E-value=5.5  Score=35.62  Aligned_cols=71  Identities=17%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC-CeeEEEEEEE
Q 025863          106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVF  184 (247)
Q Consensus       106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~-~~~yNsa~li  184 (247)
                      ..+..+.+|||+|+.|-.+....         .        ..+...++.-|.+++++++.-...-.++ ..++=.+.++
T Consensus       161 ~~r~la~~GAdill~ps~~~~~~---------~--------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv  223 (291)
T cd07565         161 IARECAYKGAELIIRIQGYMYPA---------K--------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV  223 (291)
T ss_pred             HHHHHHHCCCeEEEECCcCCCCc---------c--------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence            44445568999999997653211         0        1334456777889999987432211122 2445567889


Q ss_pred             ccCCcEEEE
Q 025863          185 GSDGKLIAK  193 (247)
Q Consensus       185 ~p~G~il~~  193 (247)
                      +|+|+++..
T Consensus       224 dP~G~ila~  232 (291)
T cd07565         224 NFDGRTLGE  232 (291)
T ss_pred             CCCCCEEEe
Confidence            999998754

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=85.41  E-value=1.1  Score=40.48  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             HhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCC
Q 025863          158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFD  201 (247)
Q Consensus       158 r~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~  201 (247)
                      +.++-..+.+  +..++...||+.++|+-+|..+.+|+|.|++.
T Consensus       110 k~yns~~~~~--~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~  151 (298)
T KOG0806|consen  110 KLYNSCADSS--CPGDGLAKYRKNHLFDTDGPGVIRYRESHLLS  151 (298)
T ss_pred             cccCcccccC--CCcchhheeeeeEEeccCCccceeeeeeeccC
Confidence            5566655554  33556679999999999999999999999987

>cd07576 R-amidase_like Pseudomonas sp

Probab=83.09  E-value=9.9  Score=32.62  Aligned_cols=69  Identities=20%  Similarity=0.285  Sum_probs=40.6

Q ss_pred             HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC-eeEEEEEEEc
Q 025863          107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFG  185 (247)
Q Consensus       107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~-~~yNsa~li~  185 (247)
                      .+..+..|||+|+.|=.+...+.                 ......++.-|.+++++++.-...-.+++ .++=.+.+++
T Consensus       151 ~~~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~  213 (254)
T cd07576         151 VRALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAG  213 (254)
T ss_pred             HHHHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEEC
Confidence            34445679999999865432221                 02233456677899999875421111222 2334457889


Q ss_pred             cCCcEEE
Q 025863          186 SDGKLIA  192 (247)
Q Consensus       186 p~G~il~  192 (247)
                      |+|+++.
T Consensus       214 p~G~il~  220 (254)
T cd07576         214 PDGTVLA  220 (254)
T ss_pred             CCCCEeE
Confidence            9999764

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=81.26  E-value=16  Score=31.82  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=41.4

Q ss_pred             HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC-eeEEEEEEEcc
Q 025863          108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFGS  186 (247)
Q Consensus       108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~-~~yNsa~li~p  186 (247)
                      +..+.+|+|+|+.|=.+.......+   . +       .......++..|.+++++++.-...-.+++ .++=.+.+++|
T Consensus       154 r~~~~~ga~li~~ps~~~~~~~~~~---~-~-------~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p  222 (268)
T cd07580         154 RLLALQGADIVCVPTNWVPMPRPPE---G-G-------PPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP  222 (268)
T ss_pred             HHHHHcCCCEEEEcCcccccCCccc---c-c-------CcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence            4445679999999976643221100   0 0       012222345567789999875322112223 23345689999


Q ss_pred             CCcEEE
Q 025863          187 DGKLIA  192 (247)
Q Consensus       187 ~G~il~  192 (247)
                      +|+++.
T Consensus       223 ~G~~~~  228 (268)
T cd07580         223 DGWPLA  228 (268)
T ss_pred             CCCeee
Confidence            999764

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
2w1v_A	276	Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso		4e-29
1f89_A	291	Crystal Structure Of Saccharomyces Cerevisiae Nit3,		1e-24
1j31_A	262	Crystal Structure Of Hypothetical Protein Ph0642 Fr		4e-07
2vhh_A	405	Crystal Structure Of A Pyrimidine Degrading Enzyme		2e-06
3ivz_A	262	Crystal Structure Of Hyperthermophilic Nitrilase Le		5e-06
1ems_A	440	Crystal Structure Of The C. Elegans Nitfhit Protein		5e-05
3p8k_A	281	Crystal Structure Of A Putative Carbon-Nitrogen Fam		6e-05

>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276

Iteration: 1
 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 80  VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
           ++ F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct: 1   MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60
Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115
Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDT 227
           FDID+PGKITF ESK+L+ G++ +  DT
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDT 143

>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 121 PEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS--GDRLY 178
           PE +NSPYS D F  Y+E I+   + S S   LS +A   KI +VGG+IPE     D++Y
Sbjct: 52  PECFNSPYSTDQFRKYSEVINPK-EPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIY 110
Query: 179 NTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
           NT  +F  DGKLI KHRK+HLFD+DIP  I+F ES++L+ GE  T +DT
Sbjct: 111 NTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDT 159

>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 11/84 (13%)
Query: 121 PEIWNSPYSHDS----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
           PE++++ Y+ +S    F V A+ I  G     +T  L E+AR L + IV G+  E+SG+ 
Sbjct: 41  PELFDTGYNFESREEVFDV-AQQIPEG----ETTTFLXELARELGLYIVAGT-AEKSGNY 94
Query: 177 LYNTCCVFGSDGKLIAKHRKIHLF 200
           LYN+  V G  G  I K+RKIHLF
Sbjct: 95  LYNSAVVVGPRG-YIGKYRKIHLF 117

>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 122 EIWNSPY---SHDSFPV--YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS--- 173
           E W  P+   + + FP   +AE+ + G    P+T ML+E+A+   + I+  SI ER    
Sbjct: 120 EAWTMPFAFCTREKFPWCEFAEEAENG----PTTKMLAELAKAYNMVIIH-SILERDMEH 174
Query: 174 GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET 221
           G+ ++NT  V  + G+ + KHRK H     IP    F ES     G T
Sbjct: 175 GETIWNTAVVISNSGRYLGKHRKNH-----IPRVGDFNESTYYMEGNT 217

>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 11/84 (13%)
Query: 121 PEIWNSPYSHDS----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
           PE++++ Y+ ++    F + A+ I  G     +T  L +VAR   + IV G+  E+ GD 
Sbjct: 41  PELFDTGYNFETREEVFEI-AQKIPEG----ETTTFLMDVARDTGVYIVAGT-AEKDGDV 94
Query: 177 LYNTCCVFGSDGKLIAKHRKIHLF 200
           LYN+  V G  G  I K+RKIHLF
Sbjct: 95  LYNSAVVVGPRG-FIGKYRKIHLF 117

>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 178 YNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG 219
           +NT  +  SDG   A++ K+HLFD++IPGK+  +ES+   AG
Sbjct: 109 WNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAG 150

>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family Hydrolase From Staphylococcus Aureus Length = 281

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 121 PEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNT 180
           PE WN+ Y  +     A++     +   S + +  +A   K+ IV GS+     ++++NT
Sbjct: 60  PEXWNNGYDLEHLNEKADN-----NLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNT 114
Query: 181 CCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE 220
                  G+LI ++ K+HL    +P      E + LTAGE
Sbjct: 115 AFSVNKSGQLINEYDKVHL----VP---XLREHEFLTAGE 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	8e-73
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	1e-67
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	4e-61
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	1e-57
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	1e-51
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	6e-47
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	2e-46
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	1e-44
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	2e-40
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	2e-40
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	3e-40
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	4e-12
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	1e-10
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	9e-09
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	1e-07

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276

 Score =  222 bits (568), Expect = 8e-73
 Identities = 75/149 (50%), Positives = 98/149 (65%), Gaps = 5/149 (3%)

Query: 81  AKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI 140
           + F++ L QL V++ K  N+  A   + EAA++GA ++ LPE +NSPY    FP YAE I
Sbjct: 2   STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
                   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLF
Sbjct: 62  P-----GESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLF 116

Query: 201 DIDIPGKITFIESKSLTAGETPTIVDTGL 229
           DID+PGKITF ESK+L+ G++ +  DT  
Sbjct: 117 DIDVPGKITFQESKTLSPGDSFSTFDTPY 145

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291

 Score =  209 bits (535), Expect = 1e-67
 Identities = 73/151 (48%), Positives = 95/151 (62%), Gaps = 6/151 (3%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAE 138
           K KV L QLS +  DK  N+  A   IE A ++    KL++LPE +NSPYS D F  Y+E
Sbjct: 10  KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSE 69

Query: 139 DIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRK 196
            I+     S S   LS +A   KI +VGG+IPE     D++YNT  +F  DGKLI KHRK
Sbjct: 70  VINPKEP-STSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRK 128

Query: 197 IHLFDIDIPGKITFIESKSLTAGETPTIVDT 227
           +HLFD+DIP  I+F ES++L+ GE  T +DT
Sbjct: 129 VHLFDVDIPNGISFHESETLSPGEKSTTIDT 159

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440

 Score =  197 bits (503), Expect = 4e-61
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 77  TPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY 136
           T    +  + +CQ++   D E+N   A+  IE A EK  +++ LPE ++    + +  + 
Sbjct: 9   TMATGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQID 68

Query: 137 AEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD---RLYNTCCVFGSDGKLIAK 193
                             E+AR   I +  G +  +        +NT  +  SDG   A+
Sbjct: 69  LAMATDC----EYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAE 124

Query: 194 HRKIHLFDIDIPGKITFIESKSLTAG-ETPTIVDT 227
           + K+HLFD++IPGK+  +ES+   AG E    VDT
Sbjct: 125 YNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDT 159

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281

 Score =  184 bits (468), Expect = 1e-57
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 19/172 (11%)

Query: 58  MASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAK 116
           M SS       +        P  +  KV + QL +   D  +N     +  E+       
Sbjct: 1   MGSSHHHHHHSSGLV-----PRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVD 55

Query: 117 LILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR 176
           +++LPE+WN+ Y  +     A++         S + +  +A   K+ IV GS+     ++
Sbjct: 56  VVVLPEMWNNGYDLEHLNEKADNNL-----GQSFSFIKHLAEKYKVDIVAGSVSNIRNNQ 110

Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG-ETPTIVDT 227
           ++NT       G+LI ++ K+HL  +         E + LTAG         
Sbjct: 111 IFNTAFSVNKSGQLINEYDKVHLVPM-------LREHEFLTAGEYVAEPFQL 155

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score =  171 bits (436), Expect = 1e-51
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 26/193 (13%)

Query: 52  PNPNPIMASSSKPE-QARAPPALPLPTPPVAKFKVGLCQLSVTAD--------KERNIAH 102
           P     +A  +  + +     A    T      +VG  Q S+           +E     
Sbjct: 41  PTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNK 100

Query: 103 ARRAIEEAAEKGAKLILLPEIWNSPYS-----HDSFPVYAEDIDAGGDASPSTAMLSEVA 157
            +  I+ AAE G  ++   E W  P++        +  +AE+ + G    P+T ML+E+A
Sbjct: 101 VKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENG----PTTKMLAELA 156

Query: 158 RLLKITIVGGSIPE--RSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKS 215
           +   + I+   +      G+ ++NT  V  + G+ + KHRK H+  +       F ES  
Sbjct: 157 KAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVG-----DFNESTY 211

Query: 216 LTAGETP-TIVDT 227
              G T   + +T
Sbjct: 212 YMEGNTGHPVFET 224

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score =  155 bits (395), Expect = 6e-47
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 20/149 (13%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY---SHDSFPVYAED 139
           KV   Q++    + ++N + A + I+EA+++GA+L++LPE++++ Y   + +     A+ 
Sbjct: 3   KVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQK 62

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I  G     +T  L +VAR   + IV G+  E+ GD LYN+  V G  G  I K+RKIHL
Sbjct: 63  IPEG----ETTTFLMDVARDTGVYIVAGT-AEKDGDVLYNSAVVVGPRG-FIGKYRKIHL 116

Query: 200 FDIDIPGKITFIESKSLTAGETP-TIVDT 227
           F         + E      G+    + D 
Sbjct: 117 F---------YREKFFFEPGDLGFRVFDL 136

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score =  155 bits (394), Expect = 2e-46
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 77  TPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV 135
               +  ++ L Q +    D + N+     A   A+E+GA+L+L PE++   Y       
Sbjct: 15  VIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICA 74

Query: 136 YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195
                        + + L  +AR   I +V         ++   T  +    G+++A ++
Sbjct: 75  QVSAEQVD----AARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQ 130

Query: 196 KIHLFDIDIPGKITFIESKSLTAGET-PTIVDTG 228
           K+ L+  +        E  +   GE  P ++  G
Sbjct: 131 KVQLYGPE--------EKAAFVPGEQPPPVLSWG 156

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score =  150 bits (382), Expect = 1e-44
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 82  KFKVGLCQLSVTA---DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY--------SH 130
           +  + + Q    A    +E+ +      + +AA +GA  I+ PE+  + +          
Sbjct: 3   QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEA 62

Query: 131 DSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS---IPERSGDRLYNTCCVFGSD 187
           +    Y  ++       P    L E A  L I    G    + E    R +NT  +    
Sbjct: 63  ELDSFYETEMP-----GPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKS 117

Query: 188 GKLIAKHRKIHLFD---IDIPGKITFIESKSLTAGETP-TIVDT 227
           GK++ K+RKIHL      +       +E +    G+    + D 
Sbjct: 118 GKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDV 161

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334

 Score =  140 bits (355), Expect = 2e-40
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 77  TPPVAKFKVGLCQLSV-----TADKERNIAHARRAIE--EAAEKGAKLILLPEIWNSPYS 129
             P+  F V   Q  V       D + NI    R +   +A   G +LI+ PE      +
Sbjct: 8   GKPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLN 67

Query: 130 HDSFPV--YAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD---RLYNTCCVF 184
              +    +  D+         T + ++  +  K+  V  SI ER+ D     YNT  + 
Sbjct: 68  TAKWLSEEFLLDVP-----GKETELYAKACKEAKVYGVF-SIMERNPDSNKNPYNTAIII 121

Query: 185 GSDGKLIAKHRKIHLFDID---IPGKITF 210
              G++I K+RK+  ++      PG +  
Sbjct: 122 DPQGEIILKYRKLFPWNPIEPWYPGDLGM 150

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266

 Score =  138 bits (351), Expect = 2e-40
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI 140
             ++ L Q S    D   N  +    +E  A   + L++LPE + S +S+++    AED+
Sbjct: 3   DLRISLVQGSTRWHDPAGNRDYYGALLEPLAG-QSDLVILPETFTSGFSNEAIDK-AEDM 60

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
           D      P+ A +   A  L   I G S+  R+   ++N       DG  +  + K HLF
Sbjct: 61  D-----GPTVAWIRTQAARLGAAITG-SVQLRTEHGVFNRLLWATPDGA-LQYYDKRHLF 113

Query: 201 DIDIPGKITFIESKSLTAGETPTIVDTG 228
                      E     AG     V+  
Sbjct: 114 RFG-------NEHLRYAAGRERLCVEWK 134

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341

 Score =  140 bits (354), Expect = 3e-40
 Identities = 26/161 (16%), Positives = 44/161 (27%), Gaps = 27/161 (16%)

Query: 82  KFKVGLCQLSV-----TADKERNIAHARRAIE--EAAEKGAKLILLPEIWNSPYSHDS-- 132
              V +    +      A+   N       I   +    G  L++ PE       +D   
Sbjct: 12  TVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAE 71

Query: 133 FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI----PERSGDRLYNTCCVFGSDG 188
               A  I         T + S   R   +  V         E      YNT  +  ++G
Sbjct: 72  MMETAVAIP-----GEETEIFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNG 126

Query: 189 KLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGL 229
           +++ K+RKI  +                  G+T        
Sbjct: 127 EIVQKYRKIIPWC---------PIEGWYPGGQTYVSEGPKG 158

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED- 139
             ++G   ++ T  D E N+ +   AIEEA     +++ LPE+  + Y         ED 
Sbjct: 5   TIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYG-------CEDL 57

Query: 140 ------IDAGGDASPSTAMLSEVARLLK--ITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191
                  +       +     E+A         +G   P R     YN  C+   +G + 
Sbjct: 58  FLTDWVAET------AIEYCFEIAASCTDITVSLGL--PMRIAGITYNCVCLV-ENGIVK 108

Query: 192 AKHRKIHL 199
               K  L
Sbjct: 109 GFSAKQFL 116

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 28/128 (21%)

Query: 84  KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED--- 139
           +V  C    T  D   N A          + GA L + PE+  S YS        ED   
Sbjct: 14  RVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYS-------IEDVLL 66

Query: 140 ----IDAGGDASPSTAMLSEVARLLK----ITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191
               +DA          L ++         + +VG   P R   R+YN   V    G ++
Sbjct: 67  QDSLLDA------VEDALLDLVTESADLLPVLVVG--APLRHRHRIYN-TAVVIHRGAVL 117

Query: 192 AKHRKIHL 199
               K +L
Sbjct: 118 GVVPKSYL 125

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 46/170 (27%)

Query: 82  KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPE--IWNSPYSHDSFPVYAE 138
           + ++ L Q+  T  D   N     R    +AE+GA L+  PE  +   P          E
Sbjct: 4   QLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYP---------VE 54

Query: 139 D-------IDAGGDASPSTAMLSEVARLLKIT-------IVG--------GSIPERSGDR 176
           D       ++A      S   L E+A  L          +VG             +    
Sbjct: 55  DLALRSSFVEA------SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGA 108

Query: 177 LYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVD 226
             N   V    G++     K HL +  +     F E +    G+T  IV 
Sbjct: 109 PRNAAAVL-HRGRVALTFAKHHLPNYGV-----FDEFRYFVPGDTMPIVR 152

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 52/175 (29%)

Query: 82  KFKVGLCQLSVTA-DKERNIAHARRAIEEAAEKGAKLILLPE--IWNSPYSHDSFPVYAE 138
           K ++ L QL+VT  D   N+A    A + A + GA  ++ PE  +   P          E
Sbjct: 6   KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYP---------PE 56

Query: 139 D-------IDAGGDASPSTAMLSEVARLLK----ITIVGGSIPERSGD------------ 175
           D         A      S A L+E+A  LK    + ++ G  P R+              
Sbjct: 57  DLLLRPAFYAA------SDAALAELAAQLKPFAGLAVLVGH-PLRAPSADGNANRAIERG 109

Query: 176 ----RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVD 226
                 YN   +    G++   +RK  L + ++     F E +       P + +
Sbjct: 110 VPPVDTYNAASLI-VGGEVAGTYRKQDLPNTEV-----FDEKRYFATDAAPYVFE 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	100.0
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	99.98
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	99.98
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	99.97
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	99.97
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	99.97
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	99.97
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.96
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	99.95
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	99.95
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	99.94
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.94
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.94
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	99.93
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	99.93
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	87.53
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	81.9

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=100.00  E-value=7.3e-33  Score=243.98  Aligned_cols=159  Identities=48%  Similarity=0.769  Sum_probs=142.4

Q ss_pred             CCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHh
Q 025863           80 VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL  159 (247)
Q Consensus        80 ~~~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~  159 (247)
                      |++||||++|+++.+|.++|++++.+++++|++.++|||||||++++||..++...+++.++     ++.++.|+++|++
T Consensus         1 M~~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~-----~~~~~~l~~~a~~   75 (276)
T 2w1v_A            1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIP-----GESTQKLSEVAKE   75 (276)
T ss_dssp             CCEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSS-----SHHHHHHHHHHHH
T ss_pred             CCccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCC-----CHHHHHHHHHHHH
Confidence            45799999999988999999999999999999999999999999999998766544444432     5899999999999


Q ss_pred             cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccce
Q 025863          160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLI  239 (247)
Q Consensus       160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lI  239 (247)
                      +++++++|++++++++++||++++|+|+|+++..|+|+|||+.+||++..+.|..+|++|++..+|+++++|+|+   +|
T Consensus        76 ~~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~~v~~~~~~~ig~---~I  152 (276)
T 2w1v_A           76 SSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGL---GI  152 (276)
T ss_dssp             HTSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCCCEEECSSCEEEE---CC
T ss_pred             cCeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCceeEEeCCceEEE---EE
Confidence            999999997777778899999999999999999999999998777877778899999999999999999999988   99


Q ss_pred             ecccccc
Q 025863          240 SFSQIIH  246 (247)
Q Consensus       240 CyD~~~~  246 (247)
                      |||...+
T Consensus       153 CyD~~fp  159 (276)
T 2w1v_A          153 CYDMRFA  159 (276)
T ss_dssp             GGGGGCH
T ss_pred             EeccccH
Confidence            9998653

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=99.98  E-value=5.5e-32  Score=239.86  Aligned_cols=162  Identities=46%  Similarity=0.690  Sum_probs=131.7

Q ss_pred             CCCceEEEEEecc-cccCHHHHHHHHHHHHHHH--HHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCC--hHHHHHH
Q 025863           79 PVAKFKVGLCQLS-VTADKERNIAHARRAIEEA--AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDA--SPSTAML  153 (247)
Q Consensus        79 ~~~~~kValvQ~~-i~~d~~~n~~~i~~~i~~A--a~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~--~~~~~~l  153 (247)
                      |.++||||++|++ ..+|.+.|++++.+++++|  ++.|+|||||||++++||...++..+++.+.   ..  ++..+.|
T Consensus         7 m~~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l   83 (291)
T 1f89_A            7 LSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVIN---PKEPSTSVQFL   83 (291)
T ss_dssp             BSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCC---SSSCCHHHHHH
T ss_pred             ccccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChHHHHHHhhhhc---cCCCChHHHHH
Confidence            3456999999999 5689999999999999999  8889999999999999986544333334320   01  4899999


Q ss_pred             HHHHHhcCcEEEEeeeeeecC--CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeE
Q 025863          154 SEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMF  231 (247)
Q Consensus       154 ~~~Ar~~~i~Iv~Gs~~e~~~--~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~gr  231 (247)
                      +++|+++++++++|+++++++  +++||++++|+|+|++++.|+|+|||+..+|.+..+.|..+|++|++..+|+++++|
T Consensus        84 ~~~a~~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~~~v~~~~~~~  163 (291)
T 1f89_A           84 SNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGK  163 (291)
T ss_dssp             HHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCCEEEEETTEE
T ss_pred             HHHHHHcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCCCceEecCCee
Confidence            999999999999997777665  789999999999999999999999998778877778899999999999999999999


Q ss_pred             Eeccccceecccccc
Q 025863          232 LLFYNGLISFSQIIH  246 (247)
Q Consensus       232 ig~~~~lICyD~~~~  246 (247)
                      +|+   +||||...|
T Consensus       164 ig~---~ICyD~~fp  175 (291)
T 1f89_A          164 FGV---GICYDMRFP  175 (291)
T ss_dssp             EEE---CCGGGGGCH
T ss_pred             EEE---EEecccCch
Confidence            988   999998653

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=99.98  E-value=1.2e-31  Score=237.59  Aligned_cols=158  Identities=24%  Similarity=0.399  Sum_probs=139.0

Q ss_pred             CCCCCCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHH
Q 025863           74 PLPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAM  152 (247)
Q Consensus        74 ~~~~~~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~  152 (247)
                      +.+.+.+.+||||++|+++. +|.++|++++.+++++|++.|+|||||||++++||..+++...++..     .++.++.
T Consensus        12 ~~~~~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~-----~~~~~~~   86 (281)
T 3p8k_A           12 SGLVPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNN-----LGQSFSF   86 (281)
T ss_dssp             --CCCTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEET-----THHHHHH
T ss_pred             ccccccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhcc-----CcHHHHH
Confidence            34556777899999999986 89999999999999999999999999999999999876554454443     3689999


Q ss_pred             HHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC-eEEEe-CCe
Q 025863          153 LSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDT-GLM  230 (247)
Q Consensus       153 l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~-~vf~~-~~g  230 (247)
                      |+++|+++++++++|+..+++++++||++++|+|+|++++.|+|+||+++       |.|..+|++|++. .+|++ +++
T Consensus        87 l~~la~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~-------f~E~~~f~~G~~~~~v~~~~~~~  159 (281)
T 3p8k_A           87 IKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM-------LREHEFLTAGEYVAEPFQLSDGT  159 (281)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT-------TTGGGTCCCCSSCCCCEECTTCC
T ss_pred             HHHHHhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC-------cCccccCcCCCCCceeEEeCCCc
Confidence            99999999999999976677889999999999999999999999999762       5899999999998 99999 999


Q ss_pred             EEeccccceecccccc
Q 025863          231 FLLFYNGLISFSQIIH  246 (247)
Q Consensus       231 rig~~~~lICyD~~~~  246 (247)
                      |+|+   +||||...|
T Consensus       160 ~ig~---~IC~D~~fp  172 (281)
T 3p8k_A          160 YVTQ---LICYDLRFP  172 (281)
T ss_dssp             EEEE---EEGGGGGCT
T ss_pred             EEEE---EEecCCCCc
Confidence            9988   999998754

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=99.97  E-value=4.7e-31  Score=245.30  Aligned_cols=197  Identities=24%  Similarity=0.397  Sum_probs=148.8

Q ss_pred             cceeccCCC-CccCChhhhhhcCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCceEEEEEecccc--------cCHHH
Q 025863           28 RSIFLGKAK-PVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT--------ADKER   98 (247)
Q Consensus        28 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kValvQ~~i~--------~d~~~   98 (247)
                      +||+||++. +.+.+|.   ..     -..+...+|..+....... +....+.++||||++|+++.        .+.++
T Consensus        26 ~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rVAlvQ~~i~~~~~~~~~~d~~~   96 (405)
T 2vhh_A           26 KRILYGVEEDQTLELPT---SA-----KDIAEQNGFDIKGYRFTAR-EEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREA   96 (405)
T ss_dssp             HHHHSSSSSCCBCCCCH---HH-----HHHHHHTTCEEEEEECCCC-CCSSSCCCEEEEEEEECCCCSCSSSCHHHHHHH
T ss_pred             HHHhcCCccCccCCCCH---HH-----HHHhhhcCceEeeeeeccc-hhhhcCCCCCEEEEEeccccccccccccccHHH
Confidence            689999998 8888876   22     1234456777666666443 33344455799999999863        46889


Q ss_pred             HHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC-----cchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec
Q 025863           99 NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS  173 (247)
Q Consensus        99 n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~-----~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~  173 (247)
                      |++++.+++++|++.|+|||||||++++||....     +..+++...    .++.++.|+++|++++++|++| +.+++
T Consensus        97 nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~----~~~~~~~l~~lA~~~~i~Iv~G-~~e~~  171 (405)
T 2vhh_A           97 IWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAE----NGPTTKMLAELAKAYNMVIIHS-ILERD  171 (405)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTT----TSHHHHHHHHHHHHTTCEEEEE-EEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhcc----CCHHHHHHHHHHHHCCEEEEEe-ceecc
Confidence            9999999999999999999999999999985421     123333331    3589999999999999999999 56665


Q ss_pred             ---CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceecccccc
Q 025863          174 ---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       174 ---~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                         ++++||++++|+|+|++++.|+|+||++++     .|.|..+|.+|++ ..+|+++++|+|+   +||||...|
T Consensus       172 ~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g-----~f~E~~~f~~G~~~~~vf~~~~~riG~---~ICyD~~fP  240 (405)
T 2vhh_A          172 MEHGETIWNTAVVISNSGRYLGKHRKNHIPRVG-----DFNESTYYMEGNTGHPVFETEFGKLAV---NICYGRHHP  240 (405)
T ss_dssp             TTTTTEEEEEEEEECTTSCEEEEEECSCCCC---------------CCCCSCCCEEEETTEEEEE---CCGGGGGCH
T ss_pred             cCCCCcEEEEEEEECCCCeEEEEEecccCCCCC-----CcCcccceeCCCCCCeeEEECCEEEEE---EEeccccCh
Confidence               578999999999999999999999996642     5679999999985 8999999999988   999998654

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=99.97  E-value=8.1e-30  Score=223.08  Aligned_cols=146  Identities=34%  Similarity=0.572  Sum_probs=129.8

Q ss_pred             eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc---hhhhhhccCCCChHHHHHHHHHHH
Q 025863           83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP---VYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~---~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      ||||++|+++. +|.++|++++.+++++|++.|+|||||||++++||...+..   ..++..    .+++.++.++++|+
T Consensus         2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~----~~~~~~~~l~~~a~   77 (262)
T 3ivz_A            2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKI----PEGETTTFLMDVAR   77 (262)
T ss_dssp             CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCT----TTSHHHHHHHHHHH
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCcc----CCCHHHHHHHHHHH
Confidence            89999999987 99999999999999999999999999999999999876532   222221    13589999999999


Q ss_pred             hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEecccc
Q 025863          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNG  237 (247)
Q Consensus       159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~  237 (247)
                      ++++++++| +++++++++||++++++|+| ++..|+|+||+         +.|..+|++|+ +..+|+++++|+|+   
T Consensus        78 ~~~~~iv~G-~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~---------~~E~~~f~~G~~~~~v~~~~~~~ig~---  143 (262)
T 3ivz_A           78 DTGVYIVAG-TAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF---------YREKFFFEPGDLGFRVFDLGFMKVGV---  143 (262)
T ss_dssp             HHCCEEEEE-EEEEETTEEEEEEEEEETTE-EEEEEECSSCC---------GGGGGTCBCCCSCSCEEECSSCEEEE---
T ss_pred             HcCcEEEEe-EEEeeCCcEEEEEEEEcCCe-eEEEEeecccC---------CchhceEeCCCCCceEEEECCEEEEE---
Confidence            999999999 78888999999999999999 99999999993         47999999999 79999999999988   


Q ss_pred             ceecccccc
Q 025863          238 LISFSQIIH  246 (247)
Q Consensus       238 lICyD~~~~  246 (247)
                      +||||...|
T Consensus       144 ~IC~D~~fp  152 (262)
T 3ivz_A          144 MICFDWFFP  152 (262)
T ss_dssp             CCGGGGGSH
T ss_pred             EEecCCCch
Confidence            999997643

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=99.97  E-value=6.4e-30  Score=223.85  Aligned_cols=148  Identities=23%  Similarity=0.245  Sum_probs=128.6

Q ss_pred             CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        80 ~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      |++||||++|+++. +|.++|++++.+++++| +.|+|||||||++++||... ....++..     .++..+.++++|+
T Consensus         1 M~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~-~~~~a~~~-----~~~~~~~l~~~a~   73 (266)
T 2e11_A            1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNE-AIDKAEDM-----DGPTVAWIRTQAA   73 (266)
T ss_dssp             CCCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSG-GGGGCEET-----TSHHHHHHHHHHH
T ss_pred             CCccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChh-HHHhhccC-----CCHHHHHHHHHHH
Confidence            45699999999986 89999999999999999 88999999999999999532 22233332     3589999999999


Q ss_pred             hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccc
Q 025863          159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGL  238 (247)
Q Consensus       159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~l  238 (247)
                      ++++++++| ..+++++++||++++++|+|+++ .|+|+||+++       +.|..+|.+|++..+|+++++|+|+   +
T Consensus        74 ~~~~~iv~G-~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~ig~---~  141 (266)
T 2e11_A           74 RLGAAITGS-VQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF-------GNEHLRYAAGRERLCVEWKGWRINP---Q  141 (266)
T ss_dssp             HHTSEEEEE-EEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG-------GTTTTTSBCCCSCCCEEETTEEEEE---E
T ss_pred             HhCCEEEEe-eeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC-------cChhhhccCCCCceEEEECCEEEEE---E
Confidence            999999999 56667889999999999999999 9999999763       3689999999999999999999988   9


Q ss_pred             eecccccc
Q 025863          239 ISFSQIIH  246 (247)
Q Consensus       239 ICyD~~~~  246 (247)
                      ||||...|
T Consensus       142 ICyD~~fp  149 (266)
T 2e11_A          142 VCYDLRFP  149 (266)
T ss_dssp             EGGGGGCT
T ss_pred             EEeccCCH
Confidence            99998754

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=99.97  E-value=1.3e-30  Score=231.15  Aligned_cols=154  Identities=21%  Similarity=0.318  Sum_probs=132.7

Q ss_pred             CCCCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc-hhhhhhccCCCChHHHHHH
Q 025863           76 PTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAML  153 (247)
Q Consensus        76 ~~~~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~-~~~e~~~~~~~~~~~~~~l  153 (247)
                      +.....+||||++|+++. +|.++|++++.+++++|++.|+|||||||++++||...++. .+++..+     ++.++.+
T Consensus        14 ~~~~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~-----~~~~~~l   88 (283)
T 3hkx_A           14 LVIRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQV-----DAARSRL   88 (283)
T ss_dssp             SCCTTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHH-----HHHHHHH
T ss_pred             ceecCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccC-----CHHHHHH
Confidence            445566799999999987 69999999999999999999999999999999999765322 3344332     5899999


Q ss_pred             HHHHHhcCcEEEEeeeeeecC-CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeE
Q 025863          154 SEVARLLKITIVGGSIPERSG-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMF  231 (247)
Q Consensus       154 ~~~Ar~~~i~Iv~Gs~~e~~~-~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~gr  231 (247)
                      +++|+++++++++| .+++++ +++||++++|+|+|++++.|+|+|||++        .|..+|++|++ ..+|+++++|
T Consensus        89 ~~~a~~~~i~iv~G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--------~E~~~f~~G~~~~~v~~~~~~~  159 (283)
T 3hkx_A           89 RGIARDRGIALVWS-LPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP--------EEKAAFVPGEQPPPVLSWGGRQ  159 (283)
T ss_dssp             HHHHHHTTSEEEEC-CBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH--------HHHHHSCCCCSCCCEEEETTEE
T ss_pred             HHHHHHhCCEEEEE-EEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc--------CchhhccCCCCCceEEEECCEE
Confidence            99999999999999 567665 7899999999999999999999999652        58899999998 6899999999


Q ss_pred             Eeccccceecccccc
Q 025863          232 LLFYNGLISFSQIIH  246 (247)
Q Consensus       232 ig~~~~lICyD~~~~  246 (247)
                      +|+   +||||...|
T Consensus       160 ig~---~IC~D~~fp  171 (283)
T 3hkx_A          160 LSL---LVCYDVEFP  171 (283)
T ss_dssp             EEE---CCGGGGGSH
T ss_pred             EEE---EEecCcCCH
Confidence            988   999998643

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.96  E-value=2.7e-29  Score=234.95  Aligned_cols=159  Identities=28%  Similarity=0.388  Sum_probs=136.2

Q ss_pred             CCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC-cchhhhhhccCCCChHHHHHHHHHHH
Q 025863           80 VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-FPVYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        80 ~~~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~-~~~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      |.++|||++|+++..|.++|++++.+++++|++.|+|||||||+++++|...+ ....++..+     ++..+.|+++|+
T Consensus        12 ~~~~kVa~vQ~~~~~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~-----~~~~~~l~~~A~   86 (440)
T 1ems_A           12 TGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATD-----CEYMEKYRELAR   86 (440)
T ss_dssp             CSEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchhHHHHhhccCC-----CHHHHHHHHHHH
Confidence            35799999999998999999999999999999999999999999998875421 112233332     588999999999


Q ss_pred             hcCcEEEEeeee--ee-cCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeE-EEeCCeEEec
Q 025863          159 LLKITIVGGSIP--ER-SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTI-VDTGLMFLLF  234 (247)
Q Consensus       159 ~~~i~Iv~Gs~~--e~-~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~v-f~~~~grig~  234 (247)
                      ++++++++|+..  ++ +++++||++++|+++|++++.|+|+||++.++|++..|.|..+|++|++..+ |+++++|+|+
T Consensus        87 ~~~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~~~~~~~~~~~~iG~  166 (440)
T 1ems_A           87 KHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGL  166 (440)
T ss_dssp             HTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCCCCEEETTEEECC
T ss_pred             HcCeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCCCceeEECCCeeEEE
Confidence            999999999665  54 3578999999999999999999999999866787778899999999999887 9999999977


Q ss_pred             cccceecccccc
Q 025863          235 YNGLISFSQIIH  246 (247)
Q Consensus       235 ~~~lICyD~~~~  246 (247)
                         +||||...|
T Consensus       167 ---~ICyD~~fp  175 (440)
T 1ems_A          167 ---SICYDVRFP  175 (440)
T ss_dssp             ---CCGGGGGCH
T ss_pred             ---EEeccccCh
Confidence               999998754

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=99.95  E-value=6.5e-28  Score=214.42  Aligned_cols=159  Identities=21%  Similarity=0.237  Sum_probs=127.8

Q ss_pred             ceEEEEEecccc---cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchh----hhhhccCCCChHHHHHHH
Q 025863           82 KFKVGLCQLSVT---ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVY----AEDIDAGGDASPSTAMLS  154 (247)
Q Consensus        82 ~~kValvQ~~i~---~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~----~e~~~~~~~~~~~~~~l~  154 (247)
                      +||||++|+++.   +|.++|++++.+++++|++.|+|||||||++++||...++...    ....+ ....++.++.++
T Consensus         3 ~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~   81 (303)
T 1uf5_A            3 QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYE-TEMPGPVVRPLF   81 (303)
T ss_dssp             EEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSB-SSSSCTTTHHHH
T ss_pred             cEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHh-hcCCCHHHHHHH
Confidence            599999999976   6999999999999999999999999999999999964321000    01111 001357889999


Q ss_pred             HHHHhcCcEEEEeeeeeec-CC---eeEEEEEEEccCCcEEEEEeccccCCCC--CCCCccc--ccccccccCC-CCeEE
Q 025863          155 EVARLLKITIVGGSIPERS-GD---RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF--IESKSLTAGE-TPTIV  225 (247)
Q Consensus       155 ~~Ar~~~i~Iv~Gs~~e~~-~~---~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~--~E~~~f~~G~-~~~vf  225 (247)
                      ++|+++++++++| +++++ ++   ++||++++++++|+++..|+|+||++++  +|.. .|  .|..+|++|+ +..+|
T Consensus        82 ~~a~~~~~~iv~G-~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~-~~~~~E~~~f~~G~~~~~v~  159 (303)
T 1uf5_A           82 EKAAELGIGFNLG-YAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYR-PFQHLEKRYFEPGDLGFPVY  159 (303)
T ss_dssp             HHHHHHTCEEEEE-EEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTC-SSCCCHHHHCCCCSSCSCEE
T ss_pred             HHHHHhCeEEEEe-eeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccc-cccccchhhccCCCCCCceE
Confidence            9999999999999 55654 45   7999999999999999999999996332  3321 23  6888999999 88999


Q ss_pred             EeCCeEEeccccceecccccc
Q 025863          226 DTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       226 ~~~~grig~~~~lICyD~~~~  246 (247)
                      +++++|+|+   +||||...+
T Consensus       160 ~~~~~~ig~---~ICyD~~fp  177 (303)
T 1uf5_A          160 DVDAAKMGM---FIANDRRWP  177 (303)
T ss_dssp             EETTEEEEE---CCGGGGGCH
T ss_pred             ecCCceEEE---EEecCccCH
Confidence            999999988   999998653

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=99.95  E-value=3.3e-27  Score=230.51  Aligned_cols=151  Identities=21%  Similarity=0.258  Sum_probs=129.4

Q ss_pred             CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863           80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR  158 (247)
Q Consensus        80 ~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar  158 (247)
                      |+.||||++|+++. +|.+.|++++.+++++|+++|+|||||||++++||...++.. .+...     ++..+.++++|+
T Consensus         3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~-~~~~~-----~~~~~~l~~la~   76 (634)
T 3ilv_A            3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFL-TDWVA-----ETAIEYCFEIAA   76 (634)
T ss_dssp             -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGG-SHHHH-----HHHHHHHHHHHT
T ss_pred             CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhh-Chhhh-----HHHHHHHHHHHH
Confidence            56899999999987 799999999999999999999999999999999998876432 22222     477889999999


Q ss_pred             hc-CcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC---------------
Q 025863          159 LL-KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP---------------  222 (247)
Q Consensus       159 ~~-~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~---------------  222 (247)
                      ++ ++++++| ++++.++++||+++++ ++|++++.|+|+||+++     ..|.|..+|++|+..               
T Consensus        77 ~~~~i~ivvG-~p~~~~~~lyNsa~vi-~~G~il~~y~K~hL~~~-----~~f~E~r~f~pG~~~~~~~~~~~g~~~p~g  149 (634)
T 3ilv_A           77 SCTDITVSLG-LPMRIAGITYNCVCLV-ENGIVKGFSAKQFLANE-----GVHYETRWFTAWPRNHTTTFLYNDVKYPFG  149 (634)
T ss_dssp             TCTTSEEEEE-EEEEETTEEEEEEEEE-ETTEEEEEEECSSCCCS-----TTCCGGGTCCCCCTTCEEEEEETTEEEEEE
T ss_pred             hCCCCEEEEe-eeEeeCCCccEEEEEE-ECCeEEEEEcCEeCCCC-----CCcChhhhcCCCCccccceecccCcccccC
Confidence            96 9999999 7888899999999999 89999999999999665     367899999999875               


Q ss_pred             -eEEEeCCeEEeccccceecccccc
Q 025863          223 -TIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       223 -~vf~~~~grig~~~~lICyD~~~~  246 (247)
                       .+|+++++++|+   .||||.+-|
T Consensus       150 ~~vf~~~g~~iG~---~IC~D~~fP  171 (634)
T 3ilv_A          150 DVLYNVKDARIGF---EICEDAWRT  171 (634)
T ss_dssp             SCCEEETTEEEEE---CCTTC----
T ss_pred             CeEEEECCEEEEE---EEeccccCC
Confidence             689999999988   999998754

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=99.94  E-value=3.4e-26  Score=220.66  Aligned_cols=150  Identities=24%  Similarity=0.320  Sum_probs=122.1

Q ss_pred             CceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHH--
Q 025863           81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA--  157 (247)
Q Consensus        81 ~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~A--  157 (247)
                      .+||||++|+++. +|++.|++++++++++|+++|||||||||++++||.+.++........      ...+.+.+++  
T Consensus         5 MkmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~------~~~~~l~~la~~   78 (565)
T 4f4h_A            5 MKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYA------ASDAALAELAAQ   78 (565)
T ss_dssp             -CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHH------HHHHHHHHHHHH
T ss_pred             cceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHH------HHHHHHHHHHHH
Confidence            3699999999987 899999999999999999999999999999999999877533222221      2223333433  


Q ss_pred             --HhcCcEEEEeeeeeecC----------------CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccC
Q 025863          158 --RLLKITIVGGSIPERSG----------------DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAG  219 (247)
Q Consensus       158 --r~~~i~Iv~Gs~~e~~~----------------~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G  219 (247)
                        +..++++++| .+.+..                +++||+++++. +|++++.|+|+||     |++..|.|+++|.+|
T Consensus        79 ~~~~~~i~ivvG-~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~hL-----p~~~~f~E~r~f~~G  151 (565)
T 4f4h_A           79 LKPFAGLAVLVG-HPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDL-----PNTEVFDEKRYFATD  151 (565)
T ss_dssp             HTTSTTCEEEEE-EEEECC-----CCCCCCTTSCCCSEEEEEEEEE-TTEEEEEEECCSC-----CCSTTCCGGGTCCCC
T ss_pred             hhhcCCcEEEEe-eeeeecccccccccceecccCCCceEEEEEEEE-CCEEEEEEeeeec-----CCCcccceeccccCC
Confidence              3358999999 565432                35999999996 6999999999999     445678999999999


Q ss_pred             CCCeEEEeCCeEEeccccceecccccc
Q 025863          220 ETPTIVDTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       220 ~~~~vf~~~~grig~~~~lICyD~~~~  246 (247)
                      +...+|+++++++|+   .||||.+-|
T Consensus       152 ~~~~v~~~~g~~iGv---~IC~Dlwfp  175 (565)
T 4f4h_A          152 AAPYVFELNGVKFGV---VICEDVWHA  175 (565)
T ss_dssp             CCCCEEEETTEEEEE---CCGGGGGSS
T ss_pred             CcceeEEecCcEEEE---EEeehhccc
Confidence            999999999999988   999998643

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=99.94  E-value=1.7e-26  Score=223.74  Aligned_cols=149  Identities=23%  Similarity=0.294  Sum_probs=129.7

Q ss_pred             CceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHh
Q 025863           81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL  159 (247)
Q Consensus        81 ~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~  159 (247)
                      .+||||++|+++. +|.+.|++++.+++++|+++|+|||||||++++||...++....+..      ++..+.++++|++
T Consensus         3 ~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~~~~~~------~~~~~~l~~la~~   76 (590)
T 3n05_A            3 LQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFV------EASRTALRELAAR   76 (590)
T ss_dssp             EEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGGCHHHH------HHHHHHHHHHHHH
T ss_pred             CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhhCHHHH------HHHHHHHHHHHHh
Confidence            4799999999987 89999999999999999999999999999999999887654433332      3778889999998


Q ss_pred             c--C----cEEEEeeeeeec-C---------CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCe
Q 025863          160 L--K----ITIVGGSIPERS-G---------DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT  223 (247)
Q Consensus       160 ~--~----i~Iv~Gs~~e~~-~---------~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~  223 (247)
                      +  +    +++++|+ +++. +         +++||++++|+ +|++++.|+|+||++++     .|.|..+|++|++..
T Consensus        77 ~~~~~~~~i~ivvG~-~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~~L~~~~-----~f~E~r~f~~G~~~~  149 (590)
T 3n05_A           77 LAEEGFGELPVLVGY-LDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYG-----VFDEFRYFVPGDTMP  149 (590)
T ss_dssp             HHHTTCTTSCEEEEE-EEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCCCSSS-----SCCHHHHCCCCCEEE
T ss_pred             hhhccCCceEEEEee-EEEEcCcccccccccCCeeEEEEEEe-CCEEEEEEeCccCCCCC-----ccCccccccCCCcce
Confidence            8  6    9999994 5554 2         37999999998 99999999999996653     578999999999999


Q ss_pred             EEEeCCeEEeccccceeccccc
Q 025863          224 IVDTGLMFLLFYNGLISFSQII  245 (247)
Q Consensus       224 vf~~~~grig~~~~lICyD~~~  245 (247)
                      +|+++++|+|+   +||||.+.
T Consensus       150 v~~~~g~~iG~---~IC~D~~f  168 (590)
T 3n05_A          150 IVRLHGVDIAL---AICEDLWQ  168 (590)
T ss_dssp             EEEETTEEEEE---EEGGGGGS
T ss_pred             EEEECCEEEEE---Eeehhhcc
Confidence            99999999988   99999876

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=99.94  E-value=3.3e-26  Score=224.86  Aligned_cols=153  Identities=24%  Similarity=0.280  Sum_probs=131.4

Q ss_pred             CceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHh
Q 025863           81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL  159 (247)
Q Consensus        81 ~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~  159 (247)
                      ..||||++|+++. +|++.|++++.+++++|++.|+|||||||++++||...++....+.++.   ..+.++.|.++|++
T Consensus        11 g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~---~~~~l~~l~~~a~~   87 (680)
T 3sdb_A           11 GFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDA---VEDALLDLVTESAD   87 (680)
T ss_dssp             TEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHH---HHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHh---hHHHHHHHHHHhhc
Confidence            4699999999987 9999999999999999999999999999999999987664333222221   24788999999999


Q ss_pred             cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCe----------------
Q 025863          160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT----------------  223 (247)
Q Consensus       160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~----------------  223 (247)
                      +++++++| .+++.++++||++++++ +|++++.|+|+||+++     ..|.|.++|++|++..                
T Consensus        88 ~~i~ivvG-~p~~~~~~lyNsa~vi~-~G~il~~y~K~hL~~~-----~~f~E~r~F~~G~~~~~~i~~~g~~vpfg~~~  160 (680)
T 3sdb_A           88 LLPVLVVG-APLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTY-----REFYERRQMAPGDGERGTIRIGGADVAFGTDL  160 (680)
T ss_dssp             CSSEEEEE-EEEEETTEEEEEEEEEE-TTEEEEEEECSCCCEE-----TTEEGGGTEECCTTCCSEEEETTEEEEBSSCE
T ss_pred             CCcEEEEe-ceEEeCCCceEEEEEEe-CCCEEEEEeeecCCCC-----CccChhhhcCCCCCCCceeeecCcccccCCce
Confidence            99999999 68888899999999998 8999999999999765     3678999999998752                


Q ss_pred             EE---EeCCeEEeccccceecccccc
Q 025863          224 IV---DTGLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       224 vf---~~~~grig~~~~lICyD~~~~  246 (247)
                      +|   +++++++|+   .||||.+-|
T Consensus       161 vf~~~~~~g~riGv---~IC~Dl~fP  183 (680)
T 3sdb_A          161 LFAASDLPGFVLHV---EIAEDMFVP  183 (680)
T ss_dssp             EEEETTCTTCEEEE---EEGGGGGSS
T ss_pred             eEeeeccCCeEEEE---EEecccccc
Confidence            46   678999988   999998765

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=99.93  E-value=8.7e-26  Score=204.68  Aligned_cols=147  Identities=22%  Similarity=0.303  Sum_probs=120.4

Q ss_pred             CceEEEEEecccc-----cCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHHH
Q 025863           81 AKFKVGLCQLSVT-----ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTA  151 (247)
Q Consensus        81 ~~~kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~~  151 (247)
                      .+||||++|+++.     +|.++|++++.+++++|++  .++|||||||++++||..+.  ..+.++..     .++.++
T Consensus        12 ~~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~-----~~~~~~   86 (334)
T 2dyu_A           12 EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDV-----PGKETE   86 (334)
T ss_dssp             -CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCS-----SSHHHH
T ss_pred             CccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChhHHHHhhccC-----CCHHHH
Confidence            4699999999852     6899999999999999987  79999999999999975433  22333332     358999


Q ss_pred             HHHHHHHhcCcEEEEeeeeeec-CCe--eEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCe-EEEe
Q 025863          152 MLSEVARLLKITIVGGSIPERS-GDR--LYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPT-IVDT  227 (247)
Q Consensus       152 ~l~~~Ar~~~i~Iv~Gs~~e~~-~~~--~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~-vf~~  227 (247)
                      .|+++|+++++++++| +++++ +++  +||++++|+|+|+++..|+|+|||.          |...|.+|++.. +|++
T Consensus        87 ~l~~~a~~~~i~iv~G-~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf~----------e~~~f~~G~~~~~v~~~  155 (334)
T 2dyu_A           87 LYAKACKEAKVYGVFS-IMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWN----------PIEPWYPGDLGMPVCEG  155 (334)
T ss_dssp             HHHHHHHHHTCEEEEE-EEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCCT----------TTCCCCCCCSCCCCEEC
T ss_pred             HHHHHHHHhCeEEEEe-eEEECCCCCceeEEEEEEECCCCCEEEEEeeccCCC----------CcccCcCCCCCceeEEC
Confidence            9999999999999999 56665 344  9999999999999999999999853          456789998754 9998


Q ss_pred             C-CeEEeccccceecccccc
Q 025863          228 G-LMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       228 ~-~grig~~~~lICyD~~~~  246 (247)
                      + +.|+|+   +||||...|
T Consensus       156 ~~g~~iG~---~ICyD~~fp  172 (334)
T 2dyu_A          156 PGGSKLAV---CICHDGMIP  172 (334)
T ss_dssp             GGGCEEEE---EEGGGGGCH
T ss_pred             CCCCEEEE---EEECCCCch
Confidence            5 559988   999998643

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=99.93  E-value=4.7e-26  Score=207.07  Aligned_cols=148  Identities=19%  Similarity=0.191  Sum_probs=121.7

Q ss_pred             CCceEEEEEeccc-----ccCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHH
Q 025863           80 VAKFKVGLCQLSV-----TADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPST  150 (247)
Q Consensus        80 ~~~~kValvQ~~i-----~~d~~~n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~  150 (247)
                      ..+||||++|+++     .+|.++|++++.+++++|++  .++|||||||++++||....  +...++.+     .++.+
T Consensus        10 ~~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~-----~~~~~   84 (341)
T 2uxy_A           10 NDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAI-----PGEET   84 (341)
T ss_dssp             TTEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCS-----SSHHH
T ss_pred             CCccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCHHHHHHHhccC-----CCHHH
Confidence            3579999999995     26899999999999999987  79999999999999975432  22222222     36899


Q ss_pred             HHHHHHHHhcCcEEEEeeee-eecC----CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEE
Q 025863          151 AMLSEVARLLKITIVGGSIP-ERSG----DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIV  225 (247)
Q Consensus       151 ~~l~~~Ar~~~i~Iv~Gs~~-e~~~----~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf  225 (247)
                      +.|+++|+++++++++| +. ++.+    +++||++++|+|+|+++..|+|+|||.          |..+|.+|++..+|
T Consensus        85 ~~l~~~a~~~~i~iv~G-~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf~----------e~~~f~pG~~~~v~  153 (341)
T 2uxy_A           85 EIFSRACRKANVWGVFS-LTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWC----------PIEGWYPGGQTYVS  153 (341)
T ss_dssp             HHHHHHHHHHTCEEEEE-EEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCCT----------TTCCCBCCCCCCCE
T ss_pred             HHHHHHHHHhCcEEEEE-eeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccCC----------CccceeCCCCceEE
Confidence            99999999999999999 55 6542    349999999999999999999999953          55679999998899


Q ss_pred             EeC-CeEEeccccceecccccc
Q 025863          226 DTG-LMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       226 ~~~-~grig~~~~lICyD~~~~  246 (247)
                      +++ +.|+|+   +||||...|
T Consensus       154 ~~~~G~riG~---~ICyD~~fp  172 (341)
T 2uxy_A          154 EGPKGMKISL---IIXDDGNYP  172 (341)
T ss_dssp             ECGGGCEEEE---EEGGGGGSH
T ss_pred             ECCCCCEEEE---EEccCCcCc
Confidence            995 559988   999998653

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=87.53  E-value=2.7  Score=35.97  Aligned_cols=70  Identities=23%  Similarity=0.314  Sum_probs=44.0

Q ss_pred             HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeE-EEEEEE
Q 025863          106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLY-NTCCVF  184 (247)
Q Consensus       106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~y-Nsa~li  184 (247)
                      ..+..+..|+|+|+.|=.|..++.                 ..+...++.-|.+++++++.-...-.+++..| =.+.++
T Consensus       173 ~~r~l~~~Ga~li~~ps~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii  235 (283)
T 3hkx_A          173 MVRAAAARGAQLVLVPTALAGDET-----------------SVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVV  235 (283)
T ss_dssp             HHHHHHHTTCSEEEEECCCBSCCT-----------------HHHHTHHHHHHHHHTCEEEEECBEEEETTEEEECCCEEE
T ss_pred             HHHHHHHCCCCEEEECCCCCCccc-----------------HHHHHHHHHHHHHhCCEEEEEccccCCCCeEEeeEEEEE
Confidence            445556789999999976543221                 12334566778899999986532222333222 235889


Q ss_pred             ccCCcEEE
Q 025863          185 GSDGKLIA  192 (247)
Q Consensus       185 ~p~G~il~  192 (247)
                      +|+|+++.
T Consensus       236 ~p~G~vl~  243 (283)
T 3hkx_A          236 GPAGQPLG  243 (283)
T ss_dssp             CTTSCEEE
T ss_pred             CCCCCEEE
Confidence            99999875

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=81.90  E-value=5.9  Score=33.71  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC-eeEEEEEEEc
Q 025863          107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFG  185 (247)
Q Consensus       107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~-~~yNsa~li~  185 (247)
                      .+..+..|+|+|+.|=.|..        .. .        ..+...++.-|.+++++++.-...-.+++ .++=.+.+++
T Consensus       175 ~r~~~~~Gadli~~psa~~~--------~~-~--------~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~  237 (281)
T 3p8k_A          175 LRYPARSGAKIAFYVAQWPM--------SR-L--------QHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVIN  237 (281)
T ss_dssp             HHHHHHTTCCEEEEEECCBG--------GG-H--------HHHHHHHHHHHHHHTSEEEEEECEEECSSCEEECCCEEEC
T ss_pred             HHHHHHCCCCEEEECCCCCC--------cc-H--------HHHHHHHHHHHHHcCCEEEEEccCcCCCCcEEeeeEEEEC
Confidence            34455689999999964421        00 1        13444567778899999986432222333 3333468899


Q ss_pred             cCCcEEEE
Q 025863          186 SDGKLIAK  193 (247)
Q Consensus       186 p~G~il~~  193 (247)
                      |+|+++..
T Consensus       238 p~G~vl~~  245 (281)
T 3p8k_A          238 PNGDLVGE  245 (281)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEEEe
Confidence            99998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	4e-22
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	3e-21
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	5e-18
d1f89a_	281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	5e-16

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 89.8 bits (221), Expect = 4e-22
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 82  KFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDID 141
           +  + +CQ++   D E+N   A+  IE A EK  +++ LPE ++    + +  +      
Sbjct: 5   RHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT 64

Query: 142 AGGDASPSTAMLSEVARLLKITIVGGSIPER---SGDRLYNTCCVFGSDGKLIAKHRKIH 198
                        E+AR   I +  G +  +        +NT  +  SDG   A++ K+H
Sbjct: 65  DC----EYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLH 120

Query: 199 LFDIDIPGKITFIESKSLTAG 219
           LFD++IPGK+  +ES+   AG
Sbjct: 121 LFDLEIPGKVRLMESEFSKAG 141

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 88.2 bits (217), Expect = 3e-21
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 82  KFKVGLCQLSVTA---DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAE 138
           +  + + Q    A    +E+ +      + +AA +GA  I+ PE+  + +          
Sbjct: 3   QMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEA 62

Query: 139 DIDAGGDAS---PSTAMLSEVARLLKITIVGGS---IPERSGDRLYNTCCVFGSDGKLIA 192
           ++D+  +     P    L E A  L I    G    + E    R +NT  +    GK++ 
Sbjct: 63  ELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVG 122

Query: 193 KHRKIHLFD 201
           K+RKIHL  
Sbjct: 123 KYRKIHLPG 131

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 78.5 bits (192), Expect = 5e-18
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 84  KVGLCQL-SVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA 142
           KVG  Q+     + ++N + A + I+EA+++GAKL++LPE++++ Y+ +S     +    
Sbjct: 3   KVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQ 62

Query: 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
             +   +T  L E+AR L + IV G+  +       +   V       I K+RKIHLF
Sbjct: 63  IPE-GETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVG--PRGYIGKYRKIHLF 117

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 5e-16
 Identities = 63/129 (48%), Positives = 80/129 (62%), Gaps = 6/129 (4%)

Query: 82  KFKVGLCQLS-VTADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAE 138
           K KV L QLS  + DK  N+  A   IE A ++    KL++LPE +NSPYS D F  Y+E
Sbjct: 9   KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSE 68

Query: 139 DIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRK 196
            I+     S S   LS +A   KI +VGG+IPE     D++YNT  +F  DGKLI KHRK
Sbjct: 69  VINPKEP-STSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRK 127

Query: 197 IHLFDIDIP 205
           +HLFD+DIP
Sbjct: 128 VHLFDVDIP 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	99.96
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	99.96
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	99.95
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	99.94
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	86.85
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	85.61

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.8e-29  Score=218.12  Aligned_cols=165  Identities=45%  Similarity=0.672  Sum_probs=132.2

Q ss_pred             CCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHC--CCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHH
Q 025863           78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLS  154 (247)
Q Consensus        78 ~~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~--gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~  154 (247)
                      .|.++||||++|+++. +|.++|++++++++++|+++  |+|||||||++++||..+++......++ ....++.++.++
T Consensus         5 ~m~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~l~   83 (281)
T d1f89a_           5 ILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVIN-PKEPSTSVQFLS   83 (281)
T ss_dssp             SBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCC-SSSCCHHHHHHH
T ss_pred             hhccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccCCCchhHHHHHHhhhc-ccCCCHHHHHHH
Confidence            4667899999999975 89999999999999998754  7899999999999998655433222211 123468999999


Q ss_pred             HHHHhcCcEEEEeeeeeec--CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEE
Q 025863          155 EVARLLKITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFL  232 (247)
Q Consensus       155 ~~Ar~~~i~Iv~Gs~~e~~--~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~gri  232 (247)
                      ++|++++++|++|++++.+  ++++||++++++|+|+++..|+|+|++++..+....+.|..+|..|+...+++++++++
T Consensus        84 ~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  163 (281)
T d1f89a_          84 NLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKF  163 (281)
T ss_dssp             HHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCCEEEEETTEEE
T ss_pred             HHhhhcCceeecceeeeeccccCceeeecccccccccccccccccccccccccccccccccceeeeeccccccccccccc
Confidence            9999999999999766644  67899999999999999999999999887655556678888999999999999999999


Q ss_pred             eccccceecccccc
Q 025863          233 LFYNGLISFSQIIH  246 (247)
Q Consensus       233 g~~~~lICyD~~~~  246 (247)
                      |+   +||||...|
T Consensus       164 g~---~iC~d~~~p  174 (281)
T d1f89a_         164 GV---GICYDMRFP  174 (281)
T ss_dssp             EE---CCGGGGGCH
T ss_pred             cc---ccccccccc
Confidence            88   999998653

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=2.9e-28  Score=210.79  Aligned_cols=150  Identities=33%  Similarity=0.494  Sum_probs=128.6

Q ss_pred             ceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhc
Q 025863           82 KFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL  160 (247)
Q Consensus        82 ~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~  160 (247)
                      .||||++|+++. +|.++|++++++++++|+++|+|||||||++++||...+.....+.... ...++..+.++++|+++
T Consensus         1 ~~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~   79 (262)
T d1j31a_           1 MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQ-IPEGETTTFLMELAREL   79 (262)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBC-TTTSHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhhhHhhhhhhh-cccCHHHHHHHHhhhcc
Confidence            389999999965 8999999999999999999999999999999999987764333222211 11368999999999999


Q ss_pred             CcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccce
Q 025863          161 KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLI  239 (247)
Q Consensus       161 ~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lI  239 (247)
                      ++++++| .++++++++||+++++++ |+++..|+|+||+.         .|..+|.+|++ +.+|+++++|+|+   +|
T Consensus        80 ~i~i~~g-~~~~~~~~~~n~~~~i~~-g~~~~~y~K~~l~~---------~e~~~~~~G~~~~~v~~~~~~~ig~---~I  145 (262)
T d1j31a_          80 GLYIVAG-TAEKSGNYLYNSAVVVGP-RGYIGKYRKIHLFY---------REKVFFEPGDLGFKVFDIGFAKVGV---MI  145 (262)
T ss_dssp             TCEEEEE-EEEEETTEEEEEEEEEET-TEEEEEEECSSCCT---------THHHHCCCCCSCSCEEECSSCEEEE---CC
T ss_pred             CceEEee-eeecccccccccceEEEe-eeEEEEEeeeecCc---------cCceeECCCCCCceEEEeCCceEEE---EE
Confidence            9999999 568889999999999986 88999999999964         57788999986 6899999999988   99


Q ss_pred             ecccccc
Q 025863          240 SFSQIIH  246 (247)
Q Consensus       240 CyD~~~~  246 (247)
                      |||...|
T Consensus       146 C~D~~~p  152 (262)
T d1j31a_         146 CFDWFFP  152 (262)
T ss_dssp             GGGGGSH
T ss_pred             ehhhhhh
Confidence            9998654

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=4.7e-28  Score=209.84  Aligned_cols=157  Identities=29%  Similarity=0.406  Sum_probs=131.4

Q ss_pred             CceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCC-CCCCcchhhhhhccCCCChHHHHHHHHHHHh
Q 025863           81 AKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY-SHDSFPVYAEDIDAGGDASPSTAMLSEVARL  159 (247)
Q Consensus        81 ~~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~-~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~  159 (247)
                      .++|||++|+++..|+++|++++.+++++|++.|+|||||||++..++ ..+...+++...+     ++.++.++++|++
T Consensus         4 ~~~rVA~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~~~~~~~~~~~~~~a~~~~-----~~~~~~l~~~a~~   78 (271)
T d1emsa2           4 GRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATD-----CEYMEKYRELARK   78 (271)
T ss_dssp             SEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCcCeEEECCccccccCCCHHHHHHHHHhhc-----chHHHhhhhhhhc
Confidence            359999999998899999999999999999999999999999975444 3333334444443     5889999999999


Q ss_pred             cCcEEEEeeeeeec---CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEecc
Q 025863          160 LKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFY  235 (247)
Q Consensus       160 ~~i~Iv~Gs~~e~~---~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~  235 (247)
                      +++++++|+...+.   ++++||++++++++|+++.+|+|+||++++.+.+..+.|..+|.+|+. ..+|+++++++|+ 
T Consensus        79 ~~i~v~~G~~~~~~~~~~~~~yNsa~vi~~~g~i~~~~~K~~l~~~~~~~~~~~~e~~~~~~g~~~~~v~~~~~~~~g~-  157 (271)
T d1emsa2          79 HNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGL-  157 (271)
T ss_dssp             TTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCCCCEEETTEEECC-
T ss_pred             ccccccccceeeeeecCCCceeEEEEEEeCCceEEEeeeeecccccccccccceeccccccCCccccceeecCCccccc-
Confidence            99999999765553   467999999999999999999999998765445556678889999976 6899999999988 


Q ss_pred             ccceeccccc
Q 025863          236 NGLISFSQII  245 (247)
Q Consensus       236 ~~lICyD~~~  245 (247)
                        +||||...
T Consensus       158 --~iC~D~~~  165 (271)
T d1emsa2         158 --SICYDVRF  165 (271)
T ss_dssp             --CCGGGGGC
T ss_pred             --cccccccc
Confidence              99999864

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=99.94  E-value=4.2e-27  Score=206.91  Aligned_cols=163  Identities=20%  Similarity=0.197  Sum_probs=125.4

Q ss_pred             CceEEEEEecccc---cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc-hhhhh--hccCCCChHHHHHHH
Q 025863           81 AKFKVGLCQLSVT---ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAED--IDAGGDASPSTAMLS  154 (247)
Q Consensus        81 ~~~kValvQ~~i~---~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~-~~~e~--~~~~~~~~~~~~~l~  154 (247)
                      ++||||++|+.+.   .+.++|++++.+++++|+++|+|||||||++++||...... ...+.  ..+....++.++.++
T Consensus         2 ~~~~ia~~Q~~Pi~~~~~~~~~l~r~~~li~~A~~~gadlvvfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
T d1uf5a_           2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF   81 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred             cEEEEEEEccCCcCCCcCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCCccccccchhHHhhhhhhhcCCHHHHHHH
Confidence            5799999999753   58999999999999999999999999999999999654221 11111  011123468899999


Q ss_pred             HHHHhcCcEEEEeeeeee---cCCeeEEEEEEEccCCcEEEEEeccccCCCC--CC-CCcccccccccccCCC-CeEEEe
Q 025863          155 EVARLLKITIVGGSIPER---SGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IP-GKITFIESKSLTAGET-PTIVDT  227 (247)
Q Consensus       155 ~~Ar~~~i~Iv~Gs~~e~---~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP-~~~~~~E~~~f~~G~~-~~vf~~  227 (247)
                      ++|+++++++++|+....   .++++||++++|+|+|+++..|+|+||++++  .| ......|..+|.+++. ..+|++
T Consensus        82 ~~A~~~~i~i~~G~~~~~~~~~~~~~yNs~~li~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~  161 (303)
T d1uf5a_          82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDV  161 (303)
T ss_dssp             HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCSCEEEE
T ss_pred             HHHHhcCceEEEEeeeeeeecCCCeeEEEEEeeccccccccccccccCCCCccccccccccccccceecccCCcceeEEe
Confidence            999999999999954322   2467999999999999999999999997753  11 1112335566766664 789999


Q ss_pred             CCeEEeccccceecccccc
Q 025863          228 GLMFLLFYNGLISFSQIIH  246 (247)
Q Consensus       228 ~~grig~~~~lICyD~~~~  246 (247)
                      +++|+|+   +||||...|
T Consensus       162 ~~~rig~---~IC~D~~~p  177 (303)
T d1uf5a_         162 DAAKMGM---FIANDRRWP  177 (303)
T ss_dssp             TTEEEEE---CCGGGGGCH
T ss_pred             cCcEEEe---eccccchhh
Confidence            9999988   999998754

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=86.85  E-value=1.5  Score=35.48  Aligned_cols=80  Identities=10%  Similarity=-0.013  Sum_probs=43.4

Q ss_pred             HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCe-eEEEEEEE
Q 025863          106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVF  184 (247)
Q Consensus       106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~-~yNsa~li  184 (247)
                      ..+.++.+|||+|+.|=.+...............       ......++.-|.+++++++.-.....+++. ++=.+.++
T Consensus       179 ~~~~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~arA~en~~~vv~~n~~g~~~~~~~~G~S~I~  251 (303)
T d1uf5a_         179 AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTS-------FHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIV  251 (303)
T ss_dssp             HHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHH-------HHHHHHHHHHHHHHTCEEEEEEBCEEETTEEECCCCEEE
T ss_pred             hhhhHhhCCCEEEEEeccccccCCcccccchhhc-------chhhhhhhhhhhcccceeeeccccccccccccccCcEEE
Confidence            4445567899999976544332211111111111       123333455567899998754232333433 33345789


Q ss_pred             ccCCcEEE
Q 025863          185 GSDGKLIA  192 (247)
Q Consensus       185 ~p~G~il~  192 (247)
                      +|+|+++.
T Consensus       252 ~p~G~vla  259 (303)
T d1uf5a_         252 APTGEIVA  259 (303)
T ss_dssp             CTTSCEEE
T ss_pred             eCCCCEEE
Confidence            99999875

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.61  E-value=1.5  Score=34.71  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=42.5

Q ss_pred             HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCe--eEEEEEE
Q 025863          106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR--LYNTCCV  183 (247)
Q Consensus       106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~--~yNsa~l  183 (247)
                      ..+.++..|+|+|+.|=.+.        .....        ......++..|.+++++++.....-.++++  +|=.+++
T Consensus       168 ~~~~~~~~ga~~i~~p~a~~--------~~~~~--------~~~~~~~~~~a~~~~~~~~~~n~~g~~~~~~~~~G~S~I  231 (271)
T d1emsa2         168 LSLWNRKRGAQLLSFPSAFT--------LNTGL--------AHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMV  231 (271)
T ss_dssp             HHHHHHHTTCSEEECCBCCC--------HHHHH--------HHHHHHHHHHHHHHTCEEEECBBEEEEETTEEEECCCEE
T ss_pred             HHHHHHhhcCcEEEeccccc--------ccccc--------hhHHHHHHHHHhhhccccccccccccCCCCCEEeeeeEE
Confidence            34556678999999983321        11111        133445677788999999875322222222  2324578


Q ss_pred             EccCCcEEE
Q 025863          184 FGSDGKLIA  192 (247)
Q Consensus       184 i~p~G~il~  192 (247)
                      ++|+|+++.
T Consensus       232 ~~P~G~il~  240 (271)
T d1emsa2         232 VDPWGAVVA  240 (271)
T ss_dssp             ECTTSCEEE
T ss_pred             EcCCCcEEE
Confidence            899999875