Citrus Sinensis ID: 025871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MGIQTMGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKMSLSPSSSIGTLTPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFLV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEcHHHHHHHHcccccccccccHHHHHHHccccHHccccccccccccccccccccccccccccHHcHHcHHHHHHHHHcccccccccccccccccccccHccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgiqtmgsqsngqqshlqpslvrqnswYSLTLNEVENQlgnlgkplgsmnlDELLKSVWSteandstgidiensstassSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGqemkshqreptlgeltLEDFLVQAGlfaeasvspmdldtVGVVTMqsfpekmslspsssigtltprrkrddnAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFLV
Flexible Loop (DISEMBL)
MGIqtmgsqsngqqshlqpSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDstgidiensstassslQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQsfpekmslspsssigtltprrkrddnafeksierrlrrkiknresaarsrarkqayhnelvskvsrleeenlklkkekvrissmflv
Low Complexity Region (SEG)
MGIQTMGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKMSLSPSSSIGTLTPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRleeenlklkkekVRISSMFLV
Disordered region (IsUnstruct)
************************NSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVW*****************************************VW************************GELTLEDFLVQAGLFAEASVSPMDLDTVGVVT*****************************************************************************************
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************HNELVSKVSRLEEENLKLKKEKVRISSMFLV
Disordered Region (DISEMBL)
*******************SLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDSTGIDIEN***********ASLTLARALSGKTVEQVWNEI*****************EPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPE***********TLTPRRKRDDNAFEKSIERRLRRKIK*************AYHNELVSKVSRLEEENLKLKKEKVRISSMFLV
Disordered Region (DISPRO)
**********************RQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWST**************************TLARALSGKTVEQVWNEIQQG*****************LGELTLEDFLVQAGLFAE************************************************************ESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIQTMGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKMSLSPSSSIGTLTPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYxxxxxxxxxxxxxxxxxxxxxxxxxxxxFLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9LES3	297	ABSCISIC ACID-INSENSITIVE	yes	no	0.878	0.730	0.459	7e-46
Q9C5Q2	262	ABSCISIC ACID-INSENSITIVE	no	no	0.870	0.820	0.444	6e-40
Q8RYD6	331	ABSCISIC ACID-INSENSITIVE	no	no	0.854	0.637	0.395	3e-22
Q9M7Q5	392	ABSCISIC ACID-INSENSITIVE	no	no	0.534	0.336	0.421	2e-21
Q9M7Q2	431	ABSCISIC ACID-INSENSITIVE	no	no	0.497	0.285	0.407	4e-19
Q9M7Q3	454	ABSCISIC ACID-INSENSITIVE	no	no	0.497	0.270	0.372	3e-18
Q9M7Q4	416	ABSCISIC ACID-INSENSITIVE	no	no	0.485	0.288	0.433	4e-17
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.493	0.276	0.323	4e-14
Q6ZDF3	318	bZIP transcription factor	no	no	0.384	0.298	0.417	6e-14
P42777	270	G-box-binding factor 4 OS	no	no	0.672	0.614	0.350	4e-12

>sp|Q9LES3|AI5L2_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1

 Score =  184 bits (466), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/259 (45%), Positives = 151/259 (58%), Gaps = 42/259 (16%)

Query: 20  SLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDSTGIDIENSSTASS 79
           SL RQ+S YSLTL+EV+N LG+ GK LGSMNLDELLKSV S EAN  + + +   + A  
Sbjct: 15  SLNRQSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKSVCSVEANQPSSMAVNGGAAAQE 74

Query: 80  SLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQAG 139
            L RQ SLTL R LS KTV++VW +IQ  Q K  G   +   ++PTLGE+TLED L++AG
Sbjct: 75  GLSRQGSLTLPRDLSKKTVDEVWKDIQ--QNKNGGSAHERRDKQPTLGEMTLEDLLLKAG 132

Query: 140 LFAEA------------------SVSPMDLDTVG----VVTMQSFPEKMSLSP------- 170
           +  E                   +    ++  VG       + S P+  +  P       
Sbjct: 133 VVTETIPGSNHDGPVGGGSAGSGAGLGQNITQVGPWIQYHQLPSMPQPQAFMPYPVSDMQ 192

Query: 171 -----SSSIGTL----TPRRKR--DDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNE 219
                SS +G L    TP RKR       EK++ERR +R IKNRESAARSRARKQAY +E
Sbjct: 193 AMVSQSSLMGGLSDTQTPGRKRVASGEVVEKTVERRQKRMIKNRESAARSRARKQAYTHE 252

Query: 220 LVSKVSRLEEENLKLKKEK 238
           L  KVSRLEEEN +L+K+K
Sbjct: 253 LEIKVSRLEEENERLRKQK 271

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q2|AI5L3_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana GN=DPBF4 PE=1 SV=1

 Score =  164 bits (415), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/254 (44%), Positives = 144/254 (56%), Gaps = 39/254 (15%)

Query: 6   MGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEAND 65
           MGS     +  +  SL RQNS YSL L+EV+  LG+ GKPLGSMNLDELLK+V       
Sbjct: 1   MGSIRGNIEEPISQSLTRQNSLYSLKLHEVQTHLGSSGKPLGSMNLDELLKTVLPP---- 56

Query: 66  STGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPT 125
                      A   L RQ SLTL R LS KTV++VW +IQQ  K   G    +  ++PT
Sbjct: 57  -----------AEEGLVRQGSLTLPRDLSKKTVDEVWRDIQQ-DKNGNGTSTTTTHKQPT 104

Query: 126 LGELTLEDFLVQAGLFAEASVSPMDLDTVGVVT----------------MQSFP----EK 165
           LGE+TLED L++AG+  E +V P + + V + +                  ++P    + 
Sbjct: 105 LGEITLEDLLLRAGVVTE-TVVPQE-NVVNIASNGQWVEYHHQPQQQQGFMTYPVCEMQD 162

Query: 166 MSLSPSSSIGTLTPRRKR-DDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKV 224
           M +    S     P RKR      EK++ERR +R IKNRESAARSRARKQAY +EL  KV
Sbjct: 163 MVMMGGLSDTPQAPGRKRVAGEIVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIKV 222

Query: 225 SRLEEENLKLKKEK 238
           SRLEEEN KL++ K
Sbjct: 223 SRLEEENEKLRRLK 236

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RYD6|AI5L1_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Arabidopsis thaliana GN=DPBF2 PE=1 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/258 (39%), Positives = 137/258 (53%), Gaps = 47/258 (18%)

Query: 23  RQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWST-EANDSTGIDIENSSTASSSL 81
           RQNS  SLTL+E++ + G   K  G+MN+DE L ++W+T E ND+ G    N     + L
Sbjct: 37  RQNSILSLTLDEIQMKSG---KSFGAMNMDEFLANLWTTVEENDNEGGGAHNDGEKPAVL 93

Query: 82  QRQASLTLARALSGKTVEQVWNEIQQGQKKR-----YGQEMKSH-QREPTLGELTLEDFL 135
            RQ SL+L   L  KTV++VW EIQ G ++       GQ    + +R+ TLGE+TLEDFL
Sbjct: 94  PRQGSLSLPVPLCKKTVDEVWLEIQNGVQQHPPSSNSGQNSAENIRRQQTLGEITLEDFL 153

Query: 136 VQAGLFAEASVSPMDLDT----------VGV-------------VTMQSFPEKMSLSPSS 172
           V+AG+  E   + M + +          VG+             V  ++ P    L  SS
Sbjct: 154 VKAGVVQEPLKTTMRMSSSDFGYNPEFGVGLHCQNQNNYGDNRSVYSENRPFYSVLGESS 213

Query: 173 SIGTLTPR-------------RKR-DDNAFEKSIERRLRRKIKNRESAARSRARKQAYHN 218
           S  T   R             +KR  D   E  +ERR RR IKNRESAARSRAR+QAY  
Sbjct: 214 SCMTGNGRSNQYLTGLDAFRIKKRIIDGPPEILMERRQRRMIKNRESAARSRARRQAYTV 273

Query: 219 ELVSKVSRLEEENLKLKK 236
           EL  +++ L EEN KLK+
Sbjct: 274 ELELELNNLTEENTKLKE 291

Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana GN=ABF1 PE=1 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 15/147 (10%)

Query: 7   GSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDS 66
           G  S G +S     L RQ+S YSLT +E+++ LG  GK  GSMN+DELLK++W+ E  D+
Sbjct: 12  GDTSRGNESK---PLARQSSLYSLTFDELQSTLGEPGKDFGSMNMDELLKNIWTAE--DT 66

Query: 67  TGIDIENSSTAS----------SSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQE 116
                  SS A+          + LQRQ SLTL R LS KTV++VW  +   +       
Sbjct: 67  QAFMTTTSSVAAPGPSGFVPGGNGLQRQGSLTLPRTLSQKTVDEVWKYLNSKEGSNGNTG 126

Query: 117 MKSHQREPTLGELTLEDFLVQAGLFAE 143
             + +R+ TLGE+TLEDFL++AG+  E
Sbjct: 127 TDALERQQTLGEMTLEDFLLRAGVVKE 153

Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q2|AI5L7_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 7 OS=Arabidopsis thaliana GN=ABF4 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 17/140 (12%)

Query: 21  LVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDSTGIDIENSSTASS- 79
           L RQ+S YSLT +E++N LG  GK  GSMN+DELLKS+W+ E   +  +    ++TA + 
Sbjct: 34  LARQSSVYSLTFDELQNTLGGPGKDFGSMNMDELLKSIWTAEEAQAMAMTSAPAATAVAQ 93

Query: 80  ----------SLQRQASLTLARALSGKTVEQVWNEI--QQGQKKRYGQEMKSHQREP--- 124
                     +LQRQ SLTL R +S KTV++VW  +  + G  +            P   
Sbjct: 94  PGAGIPPPGGNLQRQGSLTLPRTISQKTVDEVWKCLITKDGNMEGSSGGGGESNVPPGRQ 153

Query: 125 -TLGELTLEDFLVQAGLFAE 143
            TLGE+TLE+FL +AG+  E
Sbjct: 154 QTLGEMTLEEFLFRAGVVRE 173

Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q3|AI5L6_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 38/161 (23%)

Query: 21  LVRQNSWYSLTLNEVENQLGN-LGKPLGSMNLDELLKSVWSTE------ANDSTGIDIEN 73
           L RQNS +SLT +E +N  G  +GK  GSMN+DELLK++W+ E       N+++  +I N
Sbjct: 27  LTRQNSVFSLTFDEFQNSWGGGIGKDFGSMNMDELLKNIWTAEESHSMMGNNTSYTNISN 86

Query: 74  SSTASS---------------------------SLQRQASLTLARALSGKTVEQVWNEIQ 106
            ++ ++                           SLQRQ SLTL R +S K V+ VW E+ 
Sbjct: 87  GNSGNTVINGGGNNIGGLAVGVGGESGGFFTGGSLQRQGSLTLPRTISQKRVDDVWKELM 146

Query: 107 Q----GQKKRYGQEMKSHQREPTLGELTLEDFLVQAGLFAE 143
           +    G     G      QR+ TLGE+TLE+FLV+AG+  E
Sbjct: 147 KEDDIGNGVVNGGTSGIPQRQQTLGEMTLEEFLVRAGVVRE 187

Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 16/136 (11%)

Query: 21  LVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWS---TEANDSTGIDIENSSTA 77
           L RQ S YSLT +E ++   ++GK  GSMN+DELLK++WS   T+A  S  + +      
Sbjct: 21  LTRQGSIYSLTFDEFQS---SVGKDFGSMNMDELLKNIWSAEETQAMASGVVPVLGGGQE 77

Query: 78  SSSLQRQASLTLARALSGKTVEQVWNEIQQ-GQKKRYGQEM---------KSHQREPTLG 127
              LQRQ SLTL R LS KTV+QVW ++ + G     G  +            QR+ TLG
Sbjct: 78  GLQLQRQGSLTLPRTLSQKTVDQVWKDLSKVGSSGVGGSNLSQVAQAQSQSQSQRQQTLG 137

Query: 128 ELTLEDFLVQAGLFAE 143
           E+TLE+FLV+AG+  E
Sbjct: 138 EVTLEEFLVRAGVVRE 153

Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 85/198 (42%), Gaps = 76/198 (38%)

Query: 14  QSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWST------------ 61
           ++H   SL RQ+S YSLTL+E ++ L   GK  GSMN+DE L S+W+             
Sbjct: 30  ENHPFTSLGRQSSIYSLTLDEFQHALCENGKNFGSMNMDEFLVSIWNAEENNNNQQQAAA 89

Query: 62  -------------------------------------EANDSTGIDIENSSTASSSLQRQ 84
                                                +AN+  GI  E      SSL RQ
Sbjct: 90  AAGSHSVPANHNGFNNNNNNGGEGGVGVFSGGSRGNEDANNKRGIANE------SSLPRQ 143

Query: 85  ASLTLARALSGKTVEQVWNEIQQG-------------------QKKRYGQEMKSHQREPT 125
            SLTL   L  KTV++VW+EI +G                      + G E  +  R+PT
Sbjct: 144 GSLTLPAPLCRKTVDEVWSEIHRGGGSGNGGDSNGRSSSSNGQNNAQNGGETAA--RQPT 201

Query: 126 LGELTLEDFLVQAGLFAE 143
            GE+TLEDFLV+AG+  E
Sbjct: 202 FGEMTLEDFLVKAGVVRE 219

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZDF3|TRAB1_ORYSJ bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica GN=TRAB1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 8/103 (7%)

Query: 49  MNLDELLKSVWSTEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQ- 107
           MN+DELL+S+W+ E + +       ++ A   LQRQ SLTL R LS KTV++VW ++++ 
Sbjct: 1   MNMDELLRSIWTAEESQAMASASAAAAAAEGGLQRQGSLTLPRTLSVKTVDEVWRDLERE 60

Query: 108 -------GQKKRYGQEMKSHQREPTLGELTLEDFLVQAGLFAE 143
                        G E +  +R+PTLGE+TLE+FLV+AG+  E
Sbjct: 61  ASPGAAAADGGGGGGEQQQPRRQPTLGEMTLEEFLVRAGVVRE 103

Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42777|GBF4_ARATH G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 25/191 (13%)

Query: 66  STGIDIENSSTASSSLQRQASLTLARAL-------SGKTVEQVWNEIQQGQKKRYGQEMK 118
           + G  + + + AS S   + ++ + R++       +GK+V+ VW EI  G++K     MK
Sbjct: 48  AYGGGVNDYTFASDSKPFEMAIDVDRSIGDRNSVNNGKSVDDVWKEIVSGEQKTIM--MK 105

Query: 119 SHQREPTLGELTLEDFLVQAGLFAEAS------VSPMDLDTVGVVTMQSFPEKMSLS--- 169
             + E  +   TLEDFL +A +   AS      +    L+  G  T   FP +   S   
Sbjct: 106 EEEPEDIM---TLEDFLAKAEMDEGASDEIDVKIPTERLNNDGSYTF-DFPMQRHSSFQM 161

Query: 170 PSSSIGTLTPRRKRDD---NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSR 226
              S+G    R KR      A +K+  +R +R IKNRESAARSR RKQAY  EL +  ++
Sbjct: 162 VEGSMGGGVTRGKRGRVMMEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAK 221

Query: 227 LEEENLKLKKE 237
           LEEEN +L KE
Sbjct: 222 LEEENEQLLKE 232

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
224054496	261	predicted protein [Populus trichocarpa]	0.902	0.854	0.755	1e-88
255549144	238	DNA binding protein, putative [Ricinus c	0.931	0.966	0.746	6e-87
224104595	264	predicted protein [Populus trichocarpa]	0.910	0.852	0.743	2e-84
356550905	271	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-l	0.939	0.856	0.719	8e-84
444300784	264	bZIP transcription factor family protein	0.951	0.890	0.666	8e-79
225435989	248	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-l	0.906	0.903	0.643	1e-78
356574569	274	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-l	0.939	0.846	0.677	2e-77
147836035	262	hypothetical protein VITISV_032518 [Viti	0.886	0.835	0.648	2e-76
449452690	270	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-l	0.959	0.877	0.648	1e-75
449525480	270	PREDICTED: LOW QUALITY PROTEIN: ABSCISIC	0.959	0.877	0.644	4e-75

>gi|224054496|ref|XP_002298289.1| predicted protein [Populus trichocarpa] gi|222845547|gb|EEE83094.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 176/233 (75%), Positives = 192/233 (82%), Gaps = 10/233 (4%)

Query: 6   MGSQSNGQQSHLQPS-LVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEAN 64
           M SQSNGQQSH+QP  L+RQ SWY+LTLNEVENQ+GNLGKPL SMNLDELLK+VWSTEAN
Sbjct: 1   MASQSNGQQSHMQPCQLMRQTSWYNLTLNEVENQMGNLGKPLCSMNLDELLKNVWSTEAN 60

Query: 65  DSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREP 124
            S G+D E  STA+SSLQRQAS TLARALSGKTV QVW EIQ+GQKKR+GQEMK  +RE 
Sbjct: 61  QSMGMDSE--STATSSLQRQASFTLARALSGKTVAQVWKEIQEGQKKRFGQEMKVQEREQ 118

Query: 125 TLGELTLEDFLVQAGLFAEASVSP-MDLDTVGVVTMQSFPEKMSLSPSSSIGTL----TP 179
           TLGE TLEDFLVQAGLF EA++SP +DL TV  VT Q FP+ M LS S S GTL    T 
Sbjct: 119 TLGETTLEDFLVQAGLFTEATISPSLDLVTVAAVTPQCFPQNMVLSSSPSTGTLSDSTTS 178

Query: 180 RRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENL 232
              RD  A EKS ERRL+RKIKNRESAARSRARKQAYHNELVSKVSRLEEEN+
Sbjct: 179 GWNRD--APEKSTERRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENI 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549144|ref|XP_002515627.1| DNA binding protein, putative [Ricinus communis] gi|223545265|gb|EEF46772.1| DNA binding protein, putative [Ricinus communis]

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 180/241 (74%), Positives = 202/241 (83%), Gaps = 11/241 (4%)

Query: 6   MGSQSNGQQSHLQPS--LVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEA 63
           MGSQSNGQQSHLQP   L RQNSW+SLTLNEVENQL NLGKPLGSMNLDELLK+VWSTEA
Sbjct: 1   MGSQSNGQQSHLQPPYQLRRQNSWFSLTLNEVENQLENLGKPLGSMNLDELLKNVWSTEA 60

Query: 64  NDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQRE 123
           N    +DIEN+S+ASS  Q+ +    ARALSGKTV+QVW EI QGQKKR+ QE K+ ++E
Sbjct: 61  NH---LDIENTSSASSLQQQSSLTL-ARALSGKTVDQVWKEILQGQKKRFCQETKAQEKE 116

Query: 124 PTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKMSLSPSSSIGTLTPR--- 180
           PTLGE+TLEDFLVQAGLFAEAS+SPM+L TV  VT QSFP+KM+LS S S GTL+     
Sbjct: 117 PTLGEITLEDFLVQAGLFAEASLSPMELVTVDTVTPQSFPQKMALSSSPSTGTLSDTMAS 176

Query: 181 -RKRD-DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238
            +KRD  +  EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEE N+KLKKEK
Sbjct: 177 VQKRDAPDTVEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEANIKLKKEK 236

Query: 239 V 239
           +
Sbjct: 237 L 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104595|ref|XP_002313493.1| predicted protein [Populus trichocarpa] gi|222849901|gb|EEE87448.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 174/234 (74%), Positives = 196/234 (83%), Gaps = 9/234 (3%)

Query: 6   MGSQSNGQQSHLQPS-LVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEAN 64
           M SQ NGQQSHLQP  L RQNSWY+LTLNEVENQLGNLGKPL SMNLDELLK+VWSTEA+
Sbjct: 1   MASQRNGQQSHLQPYRLTRQNSWYNLTLNEVENQLGNLGKPLCSMNLDELLKNVWSTEAH 60

Query: 65  DSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREP 124
            S G+D E  ST+ SSLQ QASLTLARALSGKTV+QVW EIQQGQ+KR+G+EMK  +RE 
Sbjct: 61  QSVGMDSE--STSMSSLQHQASLTLARALSGKTVDQVWKEIQQGQEKRFGEEMKVQEREQ 118

Query: 125 TLGELTLEDFLVQAGLFAEASVSP-MDLDTVGVVTMQSFPEKMSLSPSSSIGTLTPR--- 180
           TLGE+TLEDFLVQAGLFA+A++SP +DL TV  VT QSF +KM LS S S  TL+     
Sbjct: 119 TLGEMTLEDFLVQAGLFAKATISPSLDLVTVDAVTPQSFSQKMVLSSSPSTSTLSDTTTS 178

Query: 181 -RKRDD-NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENL 232
            RKRD  +AFEKSIER+L+RKIKNRESAARSRARKQAYHNELVSK+S L EEN+
Sbjct: 179 GRKRDTPDAFEKSIERKLKRKIKNRESAARSRARKQAYHNELVSKISHLGEENI 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550905|ref|XP_003543823.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3-like [Glycine max]

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 172/239 (71%), Positives = 199/239 (83%), Gaps = 7/239 (2%)

Query: 1   MGIQTMGSQSNGQQSHLQPS-LVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVW 59
           MGIQTMGSQ NGQQSHLQPS L RQ SWYSLTL+EV  QLG++GKPLGSMNLDELL++VW
Sbjct: 1   MGIQTMGSQGNGQQSHLQPSSLSRQGSWYSLTLDEVNCQLGDMGKPLGSMNLDELLQNVW 60

Query: 60  STEANDSTGIDIENSS-TASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMK 118
           + EA+ S  I  E+ + ++SSSLQRQASLTLARALSGKTV+ VW EIQQGQKKRYG+++K
Sbjct: 61  TAEASKSLVIGAESENMSSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKRYGEDVK 120

Query: 119 SHQREPTLGELTLEDFLVQAGLFAEASVSP-MDLDTVGVVTMQSFPEKMSLSPSSSIGTL 177
           S + E TLGE TLEDFLVQAGLFAEAS+SP + LDT+     Q F +K  L  S SIG+L
Sbjct: 121 SQEGEMTLGETTLEDFLVQAGLFAEASISPAVGLDTMDSSAAQGFQQKTGLLSSPSIGSL 180

Query: 178 T---PRRKRD-DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENL 232
           +   P RKRD  +A+EK++ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEEN+
Sbjct: 181 SDTRPGRKRDAPDAYEKTLERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENV 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444300784|gb|AGD98701.1| bZIP transcription factor family protein 3 [Camellia sinensis]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 162/243 (66%), Positives = 194/243 (79%), Gaps = 8/243 (3%)

Query: 1   MGIQTMGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWS 60
           MGIQTMGS  +GQQ HLQP   RQNSW+  TL E++NQLG+LGKPLGSMNLDELLK+VW+
Sbjct: 1   MGIQTMGSHGSGQQPHLQP-FSRQNSWFGFTLEEIDNQLGDLGKPLGSMNLDELLKNVWT 59

Query: 61  TEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSH 120
            EAN STG+D  +SS+++SSLQRQASL+LARA SGKTV++VW +IQQGQK +  +EMK  
Sbjct: 60  AEANQSTGMDT-DSSSSASSLQRQASLSLARAFSGKTVDEVWRDIQQGQKMKNVEEMKGQ 118

Query: 121 QREPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKMSLSPSSSIGTLT-- 178
           +RE TL E+TLEDFLV+AGLFAE S  P  +     VT Q    ++ LSPS+SI TL+  
Sbjct: 119 EREQTLSEITLEDFLVKAGLFAEVSSGPF-IRADNAVTCQKPLSQIGLSPSTSIDTLSDT 177

Query: 179 --PRRKRD-DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235
             P RKR   +A E++I+RRLRRKIKNRESAARSRARKQAYHNELV+KVSRLEEEN+KL 
Sbjct: 178 PAPGRKRHATDAIERTIDRRLRRKIKNRESAARSRARKQAYHNELVNKVSRLEEENMKLL 237

Query: 236 KEK 238
           KEK
Sbjct: 238 KEK 240

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435989|ref|XP_002269808.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Vitis vinifera]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/244 (64%), Positives = 191/244 (78%), Gaps = 20/244 (8%)

Query: 6   MGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEAND 65
           MGSQ  GQ       LVRQ+SWYSLTL+EVENQLG+LGKPLGSMN+DELLK+VW  EAN 
Sbjct: 1   MGSQVGGQ-------LVRQSSWYSLTLDEVENQLGDLGKPLGSMNVDELLKNVWMAEANQ 53

Query: 66  STGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPT 125
               DI+N+S+   SLQRQASLT+A+ALS KTVE+VW++IQQG+KK+ G ++K   REPT
Sbjct: 54  CVSADIDNASS-KISLQRQASLTIAQALSEKTVEEVWSDIQQGEKKKCGDDIKGQVREPT 112

Query: 126 LGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKMSLSPSSSIGTLT----PRR 181
           LGE+ LEDFLV+A +F +       LD VGVVT  +FP++M LSPS S+GTL+    P  
Sbjct: 113 LGEMKLEDFLVKAAVFVKG------LDIVGVVTPPNFPQQMGLSPSPSVGTLSDTSIPGH 166

Query: 182 KRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRI 241
           +RD  + EK++ERRL+RKIKNRESAARSRARKQAYHNELVSKVSRLEEEN++LKKEK  +
Sbjct: 167 ERD-ASMEKTVERRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENVRLKKEK-EV 224

Query: 242 SSMF 245
             MF
Sbjct: 225 EKMF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574569|ref|XP_003555418.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Glycine max]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/242 (67%), Positives = 194/242 (80%), Gaps = 10/242 (4%)

Query: 1   MGIQTMGSQSNGQQSHLQPS-LVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVW 59
           MGIQT+GS  NGQQSHLQPS L RQ SWYSLTL+EV  QLG++GKPLGSMNLDELL++VW
Sbjct: 1   MGIQTVGSLGNGQQSHLQPSSLSRQGSWYSLTLDEVNCQLGDMGKPLGSMNLDELLQNVW 60

Query: 60  STEANDST---GIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQE 116
           + EA+ S+   G++ EN S++SSSLQRQASLTLARALSGKTV+ VW EIQQGQKK+YG++
Sbjct: 61  TAEASKSSVVVGVESENMSSSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKKYGED 120

Query: 117 MKSHQREPTLGELTLEDFLVQAGLFAEASVSP-MDLDTVGVVTMQSFPEKMSLSPSSSIG 175
           ++S + E TLGE TLEDFLVQAGLFAEAS+SP + LD +  +  Q F +K  L  SS   
Sbjct: 121 VRSQEGEMTLGETTLEDFLVQAGLFAEASISPAVGLDAMDSLATQGFQQKTGLLSSSPSI 180

Query: 176 TLTPR----RKRD-DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEE 230
                    RKRD  +A+EK++ERRLRRKIKNRESAARSRARKQAYHNELV KVSRLEEE
Sbjct: 181 GSLSDTRLGRKRDASDAYEKTLERRLRRKIKNRESAARSRARKQAYHNELVGKVSRLEEE 240

Query: 231 NL 232
           N+
Sbjct: 241 NV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836035|emb|CAN63966.1| hypothetical protein VITISV_032518 [Vitis vinifera]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/236 (64%), Positives = 184/236 (77%), Gaps = 17/236 (7%)

Query: 6   MGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEAND 65
           MGS   GQ       LVRQ+SWYSLTL+EVENQLG+LGKPLGSMN+DELLK+VW  EAN 
Sbjct: 1   MGSXVGGQ-------LVRQSSWYSLTLDEVENQLGDLGKPLGSMNVDELLKNVWMAEANQ 53

Query: 66  STGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPT 125
               DI+N+S+   SLQRQASLT+A+ALS KTVE+VW++IQQG+KK+ G ++K   REPT
Sbjct: 54  CVSADIDNASS-KISLQRQASLTIAQALSEKTVEEVWSDIQQGEKKKCGDDIKGQVREPT 112

Query: 126 LGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKMSLSPSSSIGTLTPRR---K 182
           LGE+ LEDFLV+A +F +       LD VGVVT  +FP++M LSPS S+GTL+       
Sbjct: 113 LGEMKLEDFLVKAAVFVKG------LDIVGVVTPPNFPQQMGLSPSPSVGTLSDTSIXGH 166

Query: 183 RDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238
             D + EK++ERRL+RKIKNRESAARSRARKQAYHNELVSKVSRLEEENL+LKKEK
Sbjct: 167 XRDASMEKTVERRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLRLKKEK 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452690|ref|XP_004144092.1| PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Cucumis sativus]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 194/245 (79%), Gaps = 8/245 (3%)

Query: 1   MGIQTMGSQSNGQQSHLQP-SLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVW 59
           MGIQTMGSQ NGQQSHL P SL RQNSWY LTL+E++NQLG +GKPLGSMNLDELL ++W
Sbjct: 1   MGIQTMGSQLNGQQSHLHPASLPRQNSWYGLTLDEIKNQLGGMGKPLGSMNLDELLHNIW 60

Query: 60  STEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS 119
           + EAN S G++ E+SS+    LQRQAS +LARALSGKTV+ VW EIQ+GQKK+  + +KS
Sbjct: 61  TAEANQSMGMESESSSSVHY-LQRQASFSLARALSGKTVDHVWKEIQEGQKKKNRENLKS 119

Query: 120 HQREPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKM-----SLSPSSSI 174
              E TLG++TLEDFL+QAG++AEAS SP+D      +T ++F  +M     SLS  +  
Sbjct: 120 QNSETTLGDVTLEDFLIQAGIYAEASPSPLDAIDTMTLTEKNFSPEMGLLSSSLSLGTLS 179

Query: 175 GTLTPRRKRD-DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLK 233
            T  P+R+RD  +  EK++ERRL+RKIKNRESAARSRARKQAYHNELV+KVSRLEEENLK
Sbjct: 180 DTTIPKRRRDPSDTLEKTMERRLKRKIKNRESAARSRARKQAYHNELVNKVSRLEEENLK 239

Query: 234 LKKEK 238
           LKKEK
Sbjct: 240 LKKEK 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525480|ref|XP_004169745.1| PREDICTED: LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Cucumis sativus]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 193/245 (78%), Gaps = 8/245 (3%)

Query: 1   MGIQTMGSQSNGQQSHLQP-SLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVW 59
           MGIQTMGSQ NGQQSHL P SL RQNSWY LTL+E++NQLG +GKPLGSMNLDELL ++W
Sbjct: 1   MGIQTMGSQLNGQQSHLHPASLPRQNSWYGLTLDEIKNQLGGMGKPLGSMNLDELLHNIW 60

Query: 60  STEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS 119
           + EAN S G++ E+SS+    LQRQAS +LARALSGKTV+ VW EIQ+GQK +  + +KS
Sbjct: 61  TAEANQSMGMESESSSSVHY-LQRQASFSLARALSGKTVDHVWKEIQEGQKXKNRENLKS 119

Query: 120 HQREPTLGELTLEDFLVQAGLFAEASVSPMDLDTVGVVTMQSFPEKM-----SLSPSSSI 174
              E TLG++TLEDFL+QAG++AEAS SP+D      +T ++F  +M     SLS  +  
Sbjct: 120 QNSETTLGDVTLEDFLIQAGIYAEASPSPLDAIDTMTLTEKNFSPEMGLLSSSLSLGTLS 179

Query: 175 GTLTPRRKRD-DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLK 233
            T  P+R+RD  +  EK++ERRL+RKIKNRESAARSRARKQAYHNELV+KVSRLEEENLK
Sbjct: 180 DTTIPKRRRDPSDTLEKTMERRLKRKIKNRESAARSRARKQAYHNELVNKVSRLEEENLK 239

Query: 234 LKKEK 238
           LKKEK
Sbjct: 240 LKKEK 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2103665	297	AREB3 "ABA-responsive element	0.550	0.457	0.514	4.7e-44
TAIR|locus:2063275	262	EEL "AT2G41070" [Arabidopsis t	0.829	0.782	0.433	1.5e-33
TAIR|locus:2076018	331	DPBF2 "AT3G44460" [Arabidopsis	0.518	0.386	0.420	3.7e-29
TAIR|locus:2049425	442	ABI5 "ABA INSENSITIVE 5" [Arab	0.214	0.119	0.566	7.6e-28
UNIPROTKB|Q8RZ35	388	P0489B03.11 "Putative ABA resp	0.412	0.262	0.372	2.6e-20
TAIR|locus:2118969	454	ABF3 "AT4G34000" [Arabidopsis	0.291	0.158	0.443	8.8e-17
UNIPROTKB|Q6ZDF3	318	TRAB1 "bZIP transcription fact	0.384	0.298	0.417	8.7e-16
TAIR|locus:2024224	270	GBF4 "G-box binding factor 4"	0.489	0.448	0.402	1.1e-10
TAIR|locus:2159986	370	AT5G42910 "AT5G42910" [Arabido	0.421	0.281	0.382	1.4e-08
TAIR|locus:2172507	315	AT5G44080 [Arabidopsis thalian	0.599	0.469	0.331	4.3e-08

TAIR|locus:2103665 AREB3 "ABA-responsive element binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 71/138 (51%), Positives = 90/138 (65%)

Query:     6 MGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEAND 65
             M SQ    +     SL RQ+S YSLTL+EV+N LG+ GK LGSMNLDELLKSV S EAN 
Sbjct:     1 MDSQRGIVEQAKSQSLNRQSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKSVCSVEANQ 60

Query:    66 STGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPT 125
              + + +   + A   L RQ SLTL R LS KTV++VW +IQQ   K  G   +   ++PT
Sbjct:    61 PSSMAVNGGAAAQEGLSRQGSLTLPRDLSKKTVDEVWKDIQQN--KNGGSAHERRDKQPT 118

Query:   126 LGELTLEDFLVQAGLFAE 143
             LGE+TLED L++AG+  E
Sbjct:   119 LGEMTLEDLLLKAGVVTE 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2063275 EEL "AT2G41070" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 104/240 (43%), Positives = 132/240 (55%)

Query:     6 MGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEAND 65
             MGS     +  +  SL RQNS YSL L+EV+  LG+ GKPLGSMNLDELLK+V       
Sbjct:     1 MGSIRGNIEEPISQSLTRQNSLYSLKLHEVQTHLGSSGKPLGSMNLDELLKTVLPP---- 56

Query:    66 STGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREPT 125
                        A   L RQ SLTL R LS KTV++VW +IQQ  K   G    +  ++PT
Sbjct:    57 -----------AEEGLVRQGSLTLPRDLSKKTVDEVWRDIQQ-DKNGNGTSTTTTHKQPT 104

Query:   126 LGELTLEDFLVQAGLFAEASVSPMDLDTVGV----VTMQSFPEKMS---------LSPSS 172
             LGE+TLED L++AG+  E  V   ++  +      V     P++           +    
Sbjct:   105 LGEITLEDLLLRAGVVTETVVPQENVVNIASNGQWVEYHHQPQQQQGFMTYPVCEMQDMV 164

Query:   173 SIGTLT-----PRRKR-DDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSR 226
              +G L+     P RKR      EK++ERR +R IKNRESAARSRARKQAY +EL  KVSR
Sbjct:   165 MMGGLSDTPQAPGRKRVAGEIVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSR 224

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2076018 DPBF2 "AT3G44460" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 58/138 (42%), Positives = 83/138 (60%)

Query:    23 RQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWST-EANDSTGIDIENSSTASSSL 81
             RQNS  SLTL+E++ + G   K  G+MN+DE L ++W+T E ND+ G    N     + L
Sbjct:    37 RQNSILSLTLDEIQMKSG---KSFGAMNMDEFLANLWTTVEENDNEGGGAHNDGEKPAVL 93

Query:    82 QRQASLTLARALSGKTVEQVWNEIQQGQKKR-----YGQEMKSH-QREPTLGELTLEDFL 135
              RQ SL+L   L  KTV++VW EIQ G ++       GQ    + +R+ TLGE+TLEDFL
Sbjct:    94 PRQGSLSLPVPLCKKTVDEVWLEIQNGVQQHPPSSNSGQNSAENIRRQQTLGEITLEDFL 153

Query:   136 VQAGLFAEASVSPMDLDT 153
             V+AG+  E   + M + +
Sbjct:   154 VKAGVVQEPLKTTMRMSS 171

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0033613 "activating transcription factor binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2049425 ABI5 "ABA INSENSITIVE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 7.6e-28, Sum P(4) = 7.6e-28
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query:   174 IGTLTPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSR 226
             +G L  R++  D   EK +ERR RR IKNRESAARSRARKQAY  EL +++++
Sbjct:   337 MGGLRGRKRVVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQ 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048316 "seed development" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IEP;RCA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB|Q8RZ35 P0489B03.11 "Putative ABA response element binding factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 155 (59.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 44/118 (37%), Positives = 64/118 (54%)

Query:     4 QTMGSQSNGQQSHLQPSLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEA 63
             Q+ G++  G++  + P L RQ+S  SLTL E++N L   G+  GSMN+DE + ++W+ E 
Sbjct:    24 QSGGTKVGGEEE-IAP-LARQSSILSLTLEELQNSLCEPGRNFGSMNMDEFVANIWNAEE 81

Query:    64 -NDSTG-----------IDIENSS--TASSSLQRQASLTLARALSGKTVEQVWNEIQQ 107
                +TG           +D  + S     S L RQ S +L   L  KTVE+VW EI Q
Sbjct:    82 FQATTGGCKGAMEEAKVVDSGSGSGDAGGSGLCRQGSFSLPLPLCQKTVEEVWTEINQ 139

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2118969 ABF3 "AT4G34000" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 8.8e-17, Sum P(2) = 8.8e-17
 Identities = 35/79 (44%), Positives = 47/79 (59%)

Query:    80 SLQRQASLTLARALSGKTVEQVWNEIQQ----GQKKRYGQEMKSHQREPTLGELTLEDFL 135
             SLQRQ SLTL R +S K V+ VW E+ +    G     G      QR+ TLGE+TLE+FL
Sbjct:   120 SLQRQGSLTLPRTISQKRVDDVWKELMKEDDIGNGVVNGGTSGIPQRQQTLGEMTLEEFL 179

Query:   136 VQAGLFAEASVSPMDLDTV 154
             V+AG+  E    P  +++V
Sbjct:   180 VRAGVVRE---EPQPVESV 195

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

UNIPROTKB|Q6ZDF3 TRAB1 "bZIP transcription factor TRAB1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 199 (75.1 bits), Expect = 8.7e-16, P = 8.7e-16
 Identities = 43/103 (41%), Positives = 64/103 (62%)

Query:    49 MNLDELLKSVWSTEANDSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQG 108
             MN+DELL+S+W+ E + +       ++ A   LQRQ SLTL R LS KTV++VW ++++ 
Sbjct:     1 MNMDELLRSIWTAEESQAMASASAAAAAAEGGLQRQGSLTLPRTLSVKTVDEVWRDLERE 60

Query:   109 QKKRY--------GQEMKSHQREPTLGELTLEDFLVQAGLFAE 143
                          G E +  +R+PTLGE+TLE+FLV+AG+  E
Sbjct:    61 ASPGAAAADGGGGGGEQQQPRRQPTLGEMTLEEFLVRAGVVRE 103

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2024224 GBF4 "G-box binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 56/139 (40%), Positives = 72/139 (51%)

Query:    94 SGKTVEQVWNEIQQGQKKRYGQEMKSHQREPTLGELTLEDFLVQA----GLFAEASVS-P 148
             +GK+V+ VW EI  G++K     MK  + E  +   TLEDFL +A    G   E  V  P
Sbjct:    83 NGKSVDDVWKEIVSGEQKTI--MMKEEEPEDIM---TLEDFLAKAEMDEGASDEIDVKIP 137

Query:   149 MD-LDTVGVVTMQSFPEKMSLS---PSSSIGTLTPRRKRDD---NAFEKSIERRLRRKIK 201
              + L+  G  T   FP +   S      S+G    R KR      A +K+  +R +R IK
Sbjct:   138 TERLNNDGSYTFD-FPMQRHSSFQMVEGSMGGGVTRGKRGRVMMEAMDKAAAQRQKRMIK 196

Query:   202 NRESAARSRARKQAYHNEL 220
             NRESAARSR RKQAY  EL
Sbjct:   197 NRESAARSRERKQAYQVEL 215

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2159986 AT5G42910 "AT5G42910" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 47/123 (38%), Positives = 65/123 (52%)

Query:    20 SLVRQNSWYSLTLNEVENQLGNLGKPLGSMNLDELLKSVWSTEANDSTGIDIENSSTASS 79
             SL RQ S YS T+++ +    +LG   GSMN+DEL+K + S E         E S     
Sbjct:    19 SLSRQGSIYSWTVDQFQT---SLGLDCGSMNMDELVKHISSAEETQ------EGS----- 64

Query:    80 SLQRQASLTLARALSGKTVEQVWNEIQQGQ--KKRYGQEMKSH-QREPTLGELTLEDFLV 136
               QRQ S TL   LS + V +VW  I + +      G    +H Q + TLGE+TLE+F +
Sbjct:    65 --QRQGSTTLPPTLSKQNVGEVWKSITEEKHTNNNGGVTNITHLQGQQTLGEITLEEFFI 122

Query:   137 QAG 139
             +AG
Sbjct:   123 RAG 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2172507 AT5G44080 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 59/178 (33%), Positives = 82/178 (46%)

Query:    65 DSTGIDIENSSTASSSLQRQASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQREP 124
             D++   +E ++T +S +      T      GK+V+++W E+  G+    G+ MK    E 
Sbjct:    90 DASPAPMEITTTTASDVVDHGGGT-ETTRGGKSVDEIWREMVSGE----GKGMKEETSEE 144

Query:   125 TLGELTLEDFLVQAGLFAEASV--SPMDLDTVGVVTMQSF--------PEKMSLSPSSSI 174
              +   TLEDFL +A +  E +V  S  DLD    VT   F        P +M      SI
Sbjct:   145 IM---TLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGSI 201

Query:   175 ------------GTLTPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNEL 220
                         G    R +      +K+  +R RR IKNRESAARSR RKQAY  EL
Sbjct:   202 VAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVEL 259

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
smart00338	65	smart00338, BRLZ, basic region leucin zipper	5e-11
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	5e-08
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	1e-06
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	9e-06

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 56.4 bits (137), Expect = 5e-11
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           E+R RR+ +NRE+A RSR RK+A   EL  KV +LE EN +LKKE
Sbjct: 4   EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKE 48

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query: 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244
           +R RR+ KNRE+A RSR RK+AY  EL  KV  LE EN  L+ E  R+   
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKE 55

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 190 KSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           K  E R RR+ +N E+A RSR +K+    EL  +V  LEEEN +L+++
Sbjct: 1   KDDEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQK 47

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242
            R R++ +NRE+A RSRARK     +L  KV  L  EN  L+ E  R+ 
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLK 50

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG3584	348	consensus cAMP response element binding protein an	99.46
smart00338	65	BRLZ basic region leucin zipper.	99.28
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.23
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.2
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.14
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	98.98
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.69
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.16
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.61
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.57
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.22
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.21
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.53
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	92.32
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	91.46
KOG1318	411	consensus Helix loop helix transcription factor EB	87.0
PRK00888	105	ftsB cell division protein FtsB; Reviewed	86.09
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.26

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.46  E-value=7.8e-14  Score=128.68  Aligned_cols=60  Identities=30%  Similarity=0.431  Sum_probs=56.7

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871          187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFL  246 (247)
Q Consensus       187 ~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~  246 (247)
                      ..|+...||+-|++||||+|+.||+|||+|++|||.+|+.||.+|..|.+|+..|++.||
T Consensus       284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc  343 (348)
T KOG3584|consen  284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC  343 (348)
T ss_pred             cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence            355667789999999999999999999999999999999999999999999999999999

>smart00338 BRLZ basic region leucin zipper

Probab=99.28  E-value=1.2e-11  Score=89.97  Aligned_cols=54  Identities=50%  Similarity=0.601  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       192 ~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      ++|+.+|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|..++
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~   56 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRREL   56 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999887764

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.23  E-value=2.8e-11  Score=109.48  Aligned_cols=66  Identities=35%  Similarity=0.427  Sum_probs=62.7

Q ss_pred             CCCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871          178 TPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS  243 (247)
Q Consensus       178 ~~grkR~~~~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~  243 (247)
                      .+.|||.+..|...+||-+||++|||.+|+-+|.|||+++.++|.++..|.+||..|..+++.|+.
T Consensus        53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~  118 (292)
T KOG4005|consen   53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA  118 (292)
T ss_pred             chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577999999999999999999999999999999999999999999999999999999999988875

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.20  E-value=5.5e-11  Score=86.39  Aligned_cols=54  Identities=46%  Similarity=0.612  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       192 ~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      ..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|..++
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~   56 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEI   56 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999998765

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.14  E-value=2.4e-10  Score=80.90  Aligned_cols=53  Identities=43%  Similarity=0.597  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      .++++.||. +||+||++||.||++++.+|+.++..|+.+|..|..+++.|..+
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            356778887 99999999999999999999999999999999999999998753

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=98.98  E-value=9.1e-10  Score=108.61  Aligned_cols=57  Identities=37%  Similarity=0.483  Sum_probs=51.0

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      .|...-||+.|||||||||..||+|||+|+..||+++..|..||+.|++|+..|+.+
T Consensus       275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q  331 (655)
T KOG4343|consen  275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQ  331 (655)
T ss_pred             cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            455667888899999999999999999999999999999999999999888888764

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.69  E-value=1.7e-08  Score=98.21  Aligned_cols=55  Identities=40%  Similarity=0.578  Sum_probs=49.1

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871          189 EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS  243 (247)
Q Consensus       189 e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~  243 (247)
                      |+..-||-||+|+|++||+.||+|||+|++.||.+|..-..||.+|++++++|..
T Consensus       246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~  300 (472)
T KOG0709|consen  246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL  300 (472)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh
Confidence            4445578899999999999999999999999999999999999999999888764

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.16  E-value=1.5e-07  Score=73.23  Aligned_cols=57  Identities=26%  Similarity=0.313  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      .+...-|..||.+|||.+|+.||.||..++.+||.++..|..+...|..++..+..+
T Consensus        24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e   80 (92)
T PF03131_consen   24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE   80 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455788899999999999999999999999999987776555555555554443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.61  E-value=0.00016  Score=66.65  Aligned_cols=50  Identities=30%  Similarity=0.411  Sum_probs=42.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871          194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS  243 (247)
Q Consensus       194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~  243 (247)
                      |-.|..++||++|.+||+||-.++..||.+|..|..+|..|-.++..|++
T Consensus       206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~  255 (279)
T KOG0837|consen  206 KLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE  255 (279)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence            34455899999999999999999999999999999888887777766654

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.57  E-value=0.00018  Score=66.00  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=51.3

Q ss_pred             chhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       186 ~~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      .+.++.+.+...|..+|-++|+|||.+.+...+++..+|..|++||..|+.++++|+.+
T Consensus       186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e  244 (269)
T KOG3119|consen  186 SPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE  244 (269)
T ss_pred             CchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666777899999999999999999999999999999999999999998865

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.22  E-value=0.001  Score=62.19  Aligned_cols=54  Identities=24%  Similarity=0.386  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      ..++..|..++|+.+|.|=|+||++..+.|+-+...|+.+|.+|+.+..+|-.+
T Consensus       224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE  277 (294)
T KOG4571|consen  224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE  277 (294)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444457888889999999999999999999999999999999888776543

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.21  E-value=0.0021  Score=53.95  Aligned_cols=55  Identities=31%  Similarity=0.431  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Q 025871          191 SIERRLRRKIKNRESAARSRARKQAYHNELVS-------KVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~-------~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      .--|..||-+|||==|+-||.|+-..-.+||.       +|.+|.+||..+..|+..++..|
T Consensus        50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~  111 (135)
T KOG4196|consen   50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY  111 (135)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455667999999999999999998888886       45566677777777777777665

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.53  E-value=0.0023  Score=64.93  Aligned_cols=47  Identities=30%  Similarity=0.421  Sum_probs=42.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871          196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS  242 (247)
Q Consensus       196 ~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~  242 (247)
                      -||+=|||.||++||+||-.-|..||.+|..|.++-++|.+|..++.
T Consensus       492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d  538 (604)
T KOG3863|consen  492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELD  538 (604)
T ss_pred             cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999888866554

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=92.32  E-value=0.0038  Score=60.17  Aligned_cols=57  Identities=26%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 025871          187 AFEKSIERRLRRKIKNRESAAR---SRARKQAYHNELVSKVSRLE-EENLKLKKEKVRISS  243 (247)
Q Consensus       187 ~~e~~~err~rR~iKNReSA~r---SR~RKqay~~eLE~~v~~Le-~eN~~L~~e~~~L~~  243 (247)
                      ...+.++|+..|+.+|+.+|++   ||.|++.++.+|+.+++.|+ .+|..|..+++.|.+
T Consensus       147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn  207 (395)
T KOG1414|consen  147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN  207 (395)
T ss_pred             CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence            3445678999999999999999   99999999999999999999 777777766665544

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=91.46  E-value=0.027  Score=54.36  Aligned_cols=60  Identities=30%  Similarity=0.298  Sum_probs=49.7

Q ss_pred             chhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc
Q 025871          186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK-KEKVRISSMF  245 (247)
Q Consensus       186 ~~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~-~e~~~L~~~y  245 (247)
                      ...+..++++.|=.++||.||-+||.|||-....|+.+...+..+|..|. .+++.|..+|
T Consensus       277 ~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~  337 (395)
T KOG1414|consen  277 TVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEV  337 (395)
T ss_pred             ccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHH
Confidence            44556677786669999999999999999999999999999998888888 6666666554

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=87.00  E-value=2  Score=42.30  Aligned_cols=59  Identities=25%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             chhhhHHHHHHHHHHHhHH-------------------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871          186 NAFEKSIERRLRRKIKNRE-------------------------SAARSR--ARKQAYHNELVSKVSRLEEENLKLKKEK  238 (247)
Q Consensus       186 ~~~e~~~err~rR~iKNRe-------------------------SA~rSR--~RKqay~~eLE~~v~~Le~eN~~L~~e~  238 (247)
                      +.| .++|||+|-.|.+|.                         |+-.-|  +++.+++.|++.+-..|+..|..|..++
T Consensus       235 d~H-NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~ri  313 (411)
T KOG1318|consen  235 DNH-NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRI  313 (411)
T ss_pred             hhh-hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHH
Confidence            444 456788887888774                         222223  4455667788888889999999999999


Q ss_pred             HHHHhcc
Q 025871          239 VRISSMF  245 (247)
Q Consensus       239 ~~L~~~y  245 (247)
                      ++|+++.
T Consensus       314 eeLk~~~  320 (411)
T KOG1318|consen  314 EELKSEA  320 (411)
T ss_pred             HHHHHHH
Confidence            9998764

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=86.09  E-value=1.9  Score=34.51  Aligned_cols=33  Identities=15%  Similarity=0.037  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871          211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRISS  243 (247)
Q Consensus       211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~  243 (247)
                      ...++.+.+++.+++.|+.+|..|+.+++.|++
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            456677788999999999999999999999977

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.26  E-value=5  Score=29.07  Aligned_cols=31  Identities=29%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871          211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRI  241 (247)
Q Consensus       211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L  241 (247)
                      ...++.+.+|+.+++.|+.+|..|+.+++.|
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456678899999999999999999999988

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	2e-11
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	1e-08
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	5e-08
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	1e-07
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	3e-06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	1e-05
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	5e-05
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-04
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	1e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245
           +R  R +KNRE+A  SR +K+ Y   L ++V+ LE +N  L +E   +  ++
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           +R +   +NR +A+RSR +++ +   L  K   L   N +L+ E
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSE 44

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 14/45 (31%), Positives = 28/45 (62%)

Query: 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           E+R  R+ +N+ +AA+ R R++   + L ++  +LE+E   L+ E
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTE 45

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           ++L++  +N+ +A R R +K+A    L  +   LE++N  LK+ 
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKER 45

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           +  R++++NR +A++SR RK      L  KV  L+ +N +L   
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELAST 44

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 189 EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244
            +S +    ++ +N E+A RSRARK     +L  KV  L  +N  L+ E  R+  +
Sbjct: 4   PESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 181 RKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           + +     +K  +    R+ +N  +  +SR + +  + E   KV  L  EN +L+K+
Sbjct: 2   KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 180 RRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKV 239
           +  R  +  E    ++ RR +KNR  AA  R ++     EL  + + L++E  KL  E  
Sbjct: 23  QHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENA 82

Query: 240 RI 241
            +
Sbjct: 83  SM 84

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 180 RRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKV 239
           R  R     E    ++ RR +KNR  A   R ++    + L ++ ++L ++  +LK+E  
Sbjct: 13  RHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS 72

Query: 240 RI 241
           R+
Sbjct: 73  RL 74

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 181 RKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237
           + +     +K  +    R+ +N  +  +SR + +  + E   KV  L  EN +L+K+
Sbjct: 2   KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.62
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.4
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.34
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.29
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.21
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.94
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.79
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.77
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.65
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.36
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.13
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.88
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	95.82
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	95.28
3m48_A	33	General control protein GCN4; leucine zipper, synt	93.95
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	93.76
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	93.37
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	92.5
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	92.37
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	92.3
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	92.05
2bni_A	34	General control protein GCN4; four helix bundle, a	91.31
1uo4_A	34	General control protein GCN4; four helix bundle, c	91.06
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	90.68
2hy6_A	34	General control protein GCN4; protein design, para	90.51
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	86.98
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	85.16
1fmh_A	33	General control protein GCN4; coiled coil, leucine	84.83
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	84.35
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	83.77
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	81.6
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	80.88

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.62  E-value=9.6e-16  Score=108.81  Aligned_cols=53  Identities=34%  Similarity=0.495  Sum_probs=51.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871          194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFL  246 (247)
Q Consensus       194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~  246 (247)
                      |+++||++||+||++||.||++|+.+||.+|..|+.+|..|..++..|.++|+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999999999986

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.40  E-value=5.7e-13  Score=96.42  Aligned_cols=53  Identities=26%  Similarity=0.404  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       193 err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      |||++|+++||+||++||.||++|+.+|+.+|..|+.+|..|..+++.|.+++
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~   53 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK   53 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999998875

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.34  E-value=1.9e-12  Score=94.11  Aligned_cols=56  Identities=32%  Similarity=0.395  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871          191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFL  246 (247)
Q Consensus       191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~  246 (247)
                      ..++..++..+||+||+|||.||++|+.+||.+|..|+.+|..|..+++.|+++|+
T Consensus         6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A            6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455666677999999999999999999999999999999999999999999875

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.29  E-value=6.6e-12  Score=90.05  Aligned_cols=52  Identities=25%  Similarity=0.334  Sum_probs=49.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      ||++|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|.++.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~   52 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV   52 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999998764

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.21  E-value=3e-11  Score=86.91  Aligned_cols=52  Identities=27%  Similarity=0.363  Sum_probs=48.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      |+++|+.+||+||++||.||++|+.+||.+|..|+.+|..|..++..|..+.
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~   52 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV   52 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578889999999999999999999999999999999999999999998764

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.94  E-value=1.2e-09  Score=79.17  Aligned_cols=52  Identities=25%  Similarity=0.413  Sum_probs=44.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      |+.+++..||.||+|||.||++++.+|+.++..|+.+|..|+.+++.|..++
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~   53 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEI   53 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999999999999999999999998764

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.79  E-value=1.4e-08  Score=76.76  Aligned_cols=58  Identities=24%  Similarity=0.279  Sum_probs=50.5

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      .++.++....|..+|.+||+|||.++++...+++.++..|+.||..|+.+++.|..+.
T Consensus         9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~   66 (78)
T 1gu4_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL   66 (78)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666679999999999999999999999999999999999999999988764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.77  E-value=1.5e-08  Score=77.98  Aligned_cols=58  Identities=24%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      .++.+++...|..+|.+||+|||.++++...+++.++..|+.||..|+.+++.|..+.
T Consensus         9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~   66 (87)
T 1hjb_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL   66 (87)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777789999999999999999999999999999999999999999998763

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.65  E-value=2.7e-09  Score=85.02  Aligned_cols=59  Identities=29%  Similarity=0.330  Sum_probs=48.1

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Q 025871          187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVS-------RLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       187 ~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~-------~Le~eN~~L~~e~~~L~~~y  245 (247)
                      ..+...-|..||.+|||.+|+.||.||.+.+.+||.++.       .|..||..|+.++..++.+|
T Consensus        30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~   95 (107)
T 3a5t_A           30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKY   95 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556688999999999999999999999999995554       56677777887777777766

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.36  E-value=1.2e-06  Score=64.89  Aligned_cols=49  Identities=24%  Similarity=0.272  Sum_probs=42.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871          195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS  243 (247)
Q Consensus       195 r~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~  243 (247)
                      ..||+..||.|++..|.||.+|+.+||.+|..|+.+|..|..++..|+.
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~   57 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ   57 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999999999999998777777766666654

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.13  E-value=1.3e-05  Score=62.01  Aligned_cols=58  Identities=22%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSR-------LEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~-------Le~eN~~L~~e~~~L~~~y  245 (247)
                      .+...-|..||.+|||..|+-||.||.....+||.++..       |..||..+.+++..++.+|
T Consensus        21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~   85 (90)
T 2wt7_B           21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS   85 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777889999999999999999999999976655       5556666666666666655

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.88  E-value=0.00049  Score=53.26  Aligned_cols=35  Identities=26%  Similarity=0.563  Sum_probs=28.8

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVS  222 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~  222 (247)
                      ..-...|..||..|||.+|++||+||.+.+++|+.
T Consensus        56 ~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           56 YQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            34456788999999999999999999999888764

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=95.82  E-value=0.011  Score=39.75  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          214 QAYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      |+|+.+||.++..|+..|.+|..++..|..+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~E   32 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNE   32 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5889999998888888888888887777653

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=95.28  E-value=0.098  Score=37.19  Aligned_cols=44  Identities=23%  Similarity=0.213  Sum_probs=34.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871          197 RRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVR  240 (247)
Q Consensus       197 rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~  240 (247)
                      ++..|||.++++||+|=+..++-...-.+.-.+||.+|+--+.+
T Consensus         4 ~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~kq   47 (63)
T 2c9l_Y            4 IKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQ   47 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            45689999999999998888777666556667899998865544

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=93.95  E-value=0.057  Score=34.48  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      +++.||.+|+.|-.+|..|..|++.|++..
T Consensus         1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~Ll   30 (33)
T 3m48_A            1 RMAQLEAKVEELLSKNWNLENEVARLKKLV   30 (33)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            367899999999999999999999998753

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=93.76  E-value=0.077  Score=34.05  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      ++..||.+|+.|-.+|..|..++..|++.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l   30 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            57899999999999999999999999875

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=93.37  E-value=0.096  Score=34.00  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      ++++||.+|+.|-.+|..|..+++.|++.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l   30 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKK   30 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            57899999999999999999999999874

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=92.50  E-value=0.1  Score=33.90  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      ++++||.+|+.|..+|..|..++..|++.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l   30 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKE   30 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46899999999999999999999998864

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=92.37  E-value=0.17  Score=32.49  Aligned_cols=29  Identities=14%  Similarity=0.229  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      +++.||.+|+.|-.+|..|..|++.|++.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l   30 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXKL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            57899999999999999999999999874

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=92.30  E-value=0.012  Score=45.40  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=22.3

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 025871          189 EKSIERRLRRKIKNRESAARSRARKQA  215 (247)
Q Consensus       189 e~~~err~rR~iKNReSA~rSR~RKqa  215 (247)
                      .-...|..||.-|||.+|++||+||..
T Consensus        61 Ql~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           61 QLALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            345567889999999999999999853

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=92.05  E-value=0.19  Score=32.01  Aligned_cols=28  Identities=11%  Similarity=0.297  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          217 HNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      ++.||.+|+.|-.+|..|..|++.|++.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l   29 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXL   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6899999999999999999999999874

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=91.31  E-value=0.23  Score=31.89  Aligned_cols=30  Identities=13%  Similarity=0.228  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          215 AYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      ++++.||.+|+.|-.+|..|..|++.|++.
T Consensus         1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~l   30 (34)
T 2bni_A            1 XRMKQIEDKLEEILSKGHHICNELARIKKL   30 (34)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            357899999999999999999999999874

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=91.06  E-value=0.26  Score=31.65  Aligned_cols=30  Identities=13%  Similarity=0.228  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      +++.||.+|+.|-.+|..|..|+..|++..
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL   31 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKKLL   31 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            578999999999999999999999998753

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=90.68  E-value=0.32  Score=30.98  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          217 HNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      +++||.+|+.|-.+|..|..|++.|++.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~l   29 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTKL   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6899999999999999999999998864

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=90.51  E-value=0.31  Score=31.25  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      +++.||.+|+.|-.+|..|..+++.|++.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l   30 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKA   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            57899999999999999999999999864

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=86.98  E-value=3.1  Score=32.65  Aligned_cols=29  Identities=34%  Similarity=0.332  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871          214 QAYHNELVSKVSRLEEENLKLKKEKVRIS  242 (247)
Q Consensus       214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~  242 (247)
                      -+.+.+|+.+|..|..||..|+.+++.-.
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46788999999999999999999987543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=85.16  E-value=7.8  Score=28.71  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKVRISSMFL  246 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~  246 (247)
                      .++--+||.|--+.=|-|-...|.|-   +..+.+|+.+-..|+.+...|..++..|++.|+
T Consensus        13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~   74 (78)
T 1gu4_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555677776555555555555444   457889999999999999999999999998775

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=84.83  E-value=1.7  Score=27.11  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871          217 HNELVSKVSRLEEENLKLKKEKVRISSMF  245 (247)
Q Consensus       217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~y  245 (247)
                      +..||.+|++-+.||-.|..++..|..++
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            35799999999999999999999998765

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=84.35  E-value=1.3  Score=28.34  Aligned_cols=29  Identities=10%  Similarity=0.210  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          216 YHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      ++++||.+|+.|-.+|..|..|+..|++.
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~l   30 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAKL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            47899999999999999999999998864

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=83.77  E-value=7.1  Score=29.53  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=42.5

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871          188 FEKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKVRISSMFL  246 (247)
Q Consensus       188 ~e~~~err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~  246 (247)
                      .+.--+||.|--+.=|-|-...|.|-   +..+.+|+.+-..|+.+...|..|+..|++.|+
T Consensus        13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~   74 (87)
T 1hjb_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (87)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667775555555554444443   457889999999999999999999999987764

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=81.60  E-value=2  Score=31.37  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871          213 KQAYHNELVSKVSRLEEENLKLKKEKVRISSM  244 (247)
Q Consensus       213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~  244 (247)
                      -..|+..|+.++..|+.+...|+.++..|..+
T Consensus        45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~   76 (83)
T 1nkp_B           45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999988888888888888888877654

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=80.88  E-value=2.4  Score=31.27  Aligned_cols=53  Identities=25%  Similarity=0.347  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871          191 SIERRLRRKIKNRESAARSR--------------ARKQAYHNELVSKVSRLEEENLKLKKEKVRISS  243 (247)
Q Consensus       191 ~~err~rR~iKNReSA~rSR--------------~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~  243 (247)
                      ..||+.|-.|+.+-.+=++-              ..--.|+..|+.++..|+.+|..|+.+++..+.
T Consensus        12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~   78 (82)
T 1am9_A           12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS   78 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34566665666665553321              234589999999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	94.37

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.37  E-value=0.0086  Score=42.87  Aligned_cols=28  Identities=32%  Similarity=0.568  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025871          192 IERRLRRKIKNRESAARSRARKQAYHNE  219 (247)
Q Consensus       192 ~err~rR~iKNReSA~rSR~RKqay~~e  219 (247)
                      --+-.||.=|||.+|+.||+||-...++
T Consensus        46 lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          46 LIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            3467788999999999999999876554