Citrus Sinensis ID: 025876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MEIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTEEVDYPDGDNSRRNLPISRWVRSGR
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHcccccccccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
meigarehdedsthKLYEASLRGSVRSlntlmqsdslilrktsltslretPLHISALLGHLDFTKALLNHKPELAKELdslkhsplhlAAAEGHVQIVKELLLANKDAClvadqdgriplHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLctqrlpsnyaAWLDWTLsicypkhltietRGAVAILMMpsvggitfFQESFAERSLIvvteevdypdgdnsrrnlpisrwvrsgr
Flexible Loop (DISEMBL)
meigarehdedsthklyeaslrgsvrslntlmqsdslilRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTeevdypdgdnsrrnlpisrwvrsgr
Low Complexity Region (SEG)
MEIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTEEVDYPDGDNSRRNLPISRWVRSGR
Disordered region (IsUnstruct)
***********************************SLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTEEVDY********************
Disordered Region (DISOPRED)
MEIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTEEVDYPDGDNSRRNLPISRWVRSGR
Disordered Region (DISEMBL)
*************HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTEEVDYPDGDNSRRNLPISRWVRSGR
Disordered Region (DISPRO)
***GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTEEVDYPDGDNSRRNLPISRWVRS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTEEVDYPDGDNSRRNLPISRWVRSGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
A5PMU4	1280	Ankyrin repeat and steril	no	no	0.566	0.109	0.34	2e-11
Q92625	1134	Ankyrin repeat and SAM do	yes	no	0.627	0.136	0.335	3e-11
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.437	0.057	0.410	1e-10
Q7Z6G8	1248	Ankyrin repeat and steril	no	no	0.445	0.088	0.380	1e-10
P0C6S7	1260	Ankyrin repeat and steril	yes	no	0.445	0.087	0.380	1e-10
Q8BIZ1	1259	Ankyrin repeat and steril	yes	no	0.445	0.087	0.380	2e-10
Q7Z020	1296	Transient receptor potent	yes	no	0.574	0.109	0.337	2e-10
Q8UVC3	1106	Inversin OS=Gallus gallus	no	no	0.429	0.095	0.370	7e-10
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.485	0.225	0.314	2e-09
Q6P9K8	1431	Caskin-1 OS=Mus musculus	no	no	0.566	0.097	0.342	2e-09

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 10/150 (6%)

Query: 37  LILRKTSLTSLR----ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE 92
           ++L++ +  S+R    ETPL ++AL G L   + LL   P L    ++ KH+PLHLAA  
Sbjct: 145 VLLQELTDPSMRNSRGETPLDLAALYGRLQVVRMLLTAHPNLMS-CNTRKHTPLHLAARN 203

Query: 93  GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV 152
           GH   V+ LL A+ D     ++     LH AA+ G+++VVQ L+ +  D+ +    G T 
Sbjct: 204 GHYATVQVLLEADMDVNTQTEKGSA--LHEAALFGKMDVVQLLLDSGIDANIRDCQGRTA 261

Query: 153 LHFKAEHLSLCTQRLPSNYAAWLDWTLSIC 182
           L    EH S  +Q++ S      D+ +S C
Sbjct: 262 LDILREHPSQKSQQIAS---LIHDYMMSDC 288

Danio rerio (taxid: 7955)

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 6/161 (3%)

Query: 7   EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
           E + D+   L+ A+  G    +  L++    +   T   +  ETPL ++AL G L+  K 
Sbjct: 144 EQNNDNETALHCAAQYGHTEVVKVLLEE---LTDPTMRNNKFETPLDLAALYGRLEVVKM 200

Query: 67  LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
           LLN  P L    ++ KH+PLHLAA  GH  +V+ LL A  D+    +      LH AA+ 
Sbjct: 201 LLNAHPNLLS-CNTKKHTPLHLAARNGHKAVVQVLLDAGMDSNYQTEMGSA--LHEAALF 257

Query: 127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
           G+ +VVQ L++A  D  +   HG T L    E  S  +Q++
Sbjct: 258 GKTDVVQILLAAGTDVNIKDNHGLTALDTVRELPSQKSQQI 298

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
           ETPLH++A  GH +  K LL +K ++ AK  D    +PLH AA  GH  +VK LLL N  
Sbjct: 438 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD--QTPLHCAARIGHTNMVK-LLLENNA 494

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
              +A   G  PLH+AA  G VE V  L+      A +   G T LH  A++
Sbjct: 495 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 546

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           ETPL ++AL G L   K +++  P L    ++ KH+PLHLAA  GH  +V+ LL A  D 
Sbjct: 162 ETPLDLAALYGRLRVVKMIISAHPNLMS-CNTRKHTPLHLAARNGHKAVVQVLLEAGMDV 220

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS 161
               ++     LH AA+ G+V+VV+ L+    D+ +    G TVL    EH S
Sbjct: 221 SCQTEKGSA--LHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPS 271

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           ETPL ++AL G L   K +++  P L    ++ KH+PLHLAA  GH  +V+ LL A  D 
Sbjct: 162 ETPLDLAALYGRLRVVKMIISAHPNLMS-CNTRKHTPLHLAARNGHKAVVQVLLEAGMDV 220

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS 161
               ++     LH AA+ G+V+VV+ L+    D+ +    G TVL    EH S
Sbjct: 221 SCQTEKGSA--LHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPS 271

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.

Rattus norvegicus (taxid: 10116)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           ETPL ++AL G L   K +++  P L    ++ KH+PLHLAA  GH  +V+ LL A  D 
Sbjct: 162 ETPLDLAALYGRLRVVKMIISAHPNLMS-CNTRKHTPLHLAARNGHKAVVQVLLEAGMDV 220

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS 161
               ++     LH AA+ G+V+VV+ L+    D+ +    G TVL    EH S
Sbjct: 221 SCQTEKGSA--LHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPS 271

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 12/154 (7%)

Query: 7   EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
           E D      L+ AS  G +RSL  L++  + I  K +     E+PLH +A  G  +  + 
Sbjct: 538 EKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNN---ESPLHFAARYGRYNTVRQ 594

Query: 67  LLNHKPE--LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124
           LL+ +    +  E D    +PLH+++ +GH ++V+  LL N+ A L  D  GR PL LAA
Sbjct: 595 LLDSEKGSFIINESDGAGMTPLHISSQQGHTRVVQ--LLLNRGALLHRDHTGRNPLQLAA 652

Query: 125 MRGRVEVVQELISAN---FDSALVKFHGDTVLHF 155
           M G  E ++ L S +    D   V   G+T LH 
Sbjct: 653 MSGYTETIELLHSVHSHLLDQ--VDKDGNTALHL 684

Essential for thermotaxis by sensing environmental temperature. Receptor-activated non-selective cation channel involved in detection of sensations such as temperature. Involved in heat nociception by being activated by warm temperature of about 24-29 degrees Celsius.

Drosophila melanogaster (taxid: 7227)

>sp|Q8UVC3|INVS_CHICK Inversin OS=Gallus gallus GN=INVS PE=2 SV=2

 Score = 64.3 bits (155), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           T LH +AL GH+   K LL    ++   LD +KH+PL  A   GH ++++ L+       
Sbjct: 359 TALHAAALSGHVSTVKLLLERNAQV-DALDVMKHTPLFRACEMGHKEVIQTLIKGGARVD 417

Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
           LV DQDG  PLH AA+ G  +V Q LI    +  +  + G T L   A
Sbjct: 418 LV-DQDGHSPLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAA 464

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling.

Gallus gallus (taxid: 9031)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
              H++A  GHL   K LL   PEL +  D+   SPL+ AA + H++IV  +L  +    
Sbjct: 96  NAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCA 155

Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF---HGDTVLHF--KAEHLSLCT 164
           ++  ++G+  LH A   G + +V+ LI    D+A+V      G T LH   K   L +  
Sbjct: 156 MIVRKNGKTSLHTAGRYGLLRIVKALIEK--DAAIVGVKDKKGQTALHMAVKGRSLEVVE 213

Query: 165 QRLPSNY 171
           + L ++Y
Sbjct: 214 EILQADY 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P9K8|CSKI1_MOUSE Caskin-1 OS=Mus musculus GN=Caskin1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 8   HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKAL 67
            D D    L+ A+L G+   ++ L+++ + +  K +   +R  PLH +A  G  +  K +
Sbjct: 45  QDPDGFSALHHAALNGNTELISLLLEAQAAVDIKDN-KGMR--PLHYAAWQGRKEPMKLV 101

Query: 68  LNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
           L     +    D   H PLHLAA  GH  + + LL    + C+V D  G+ PL LA   G
Sbjct: 102 LKAGSAVNVPSDE-GHIPLHLAAQHGHYDVSEMLLQHQSNPCMV-DNSGKTPLDLACEFG 159

Query: 128 RVEVVQELISANFDSALVKFH-GDTV 152
           RV VVQ L+S+N  +AL++   GDT 
Sbjct: 160 RVGVVQLLLSSNMCAALLEPRPGDTT 185

May link the scaffolding protein CASK to downstream intracellular effectors.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
255560679	492	protein binding protein, putative [Ricin	0.623	0.313	0.605	2e-45
255560691	474	ankyrin repeat-containing protein, putat	0.582	0.303	0.611	8e-42
356546390	444	PREDICTED: ankyrin repeat-containing pro	0.619	0.344	0.587	9e-40
255560683	439	protein binding protein, putative [Ricin	0.611	0.343	0.590	2e-39
255560685	525	ankyrin repeat-containing protein, putat	0.611	0.287	0.526	1e-35
255560687	431	ankyrin repeat-containing protein, putat	0.619	0.354	0.512	1e-34
356545932	469	PREDICTED: ankyrin repeat-containing pro	0.526	0.277	0.569	2e-34
359484287	355	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.587	0.408	0.513	3e-34
147835216	360	hypothetical protein VITISV_038914 [Viti	0.587	0.402	0.527	5e-34
225444811	537	PREDICTED: uncharacterized protein LOC10	0.587	0.270	0.52	6e-34

>gi|255560679|ref|XP_002521353.1| protein binding protein, putative [Ricinus communis] gi|223539431|gb|EEF41021.1| protein binding protein, putative [Ricinus communis]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/157 (60%), Positives = 115/157 (73%), Gaps = 3/157 (1%)

Query: 6   REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTK 65
           R  +ED+T  LYEA++RG   +LN+L+Q D LIL + SLTS  +TPLHIS+LLGHLDFT 
Sbjct: 4   RTGEEDTT-TLYEAAMRGCTETLNSLIQRDRLILNRVSLTSFADTPLHISSLLGHLDFTT 62

Query: 66  ALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM 125
           A+L   P++A  LDSLK SPLHLA+AEGH +I+K LL  + D CLV D+DGRIPLHLAAM
Sbjct: 63  AILTQNPKMATRLDSLKRSPLHLASAEGHTEIIKALLAVDNDVCLVRDEDGRIPLHLAAM 122

Query: 126 RGRVEVVQELISANFDSALVKFHGDTVLHF--KAEHL 160
           RG VE +QEL+SA  DS      GDTVLH   K  HL
Sbjct: 123 RGNVEAIQELVSARPDSTSELLEGDTVLHLCVKYNHL 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560691|ref|XP_002521359.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223539437|gb|EEF41027.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 109/144 (75%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           LYEA+ RGSV  L+TL+Q D  IL K S T+  ETPLHIS+LLGHLDFT+A+L + P++A
Sbjct: 9   LYEAAKRGSVAILDTLIQKDQFILNKVSFTTFPETPLHISSLLGHLDFTRAILENCPKMA 68

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
            E+DSL  SPLHLA+AEGH +IVK LL A  D  +V DQD RIPLHLAAM+GRVEV+QEL
Sbjct: 69  SEIDSLNRSPLHLASAEGHTEIVKALLRAYADVYVVRDQDDRIPLHLAAMKGRVEVIQEL 128

Query: 136 ISANFDSALVKFHGDTVLHFKAEH 159
           + A+ +SA     GDTVLH   ++
Sbjct: 129 VMASPESASEMLDGDTVLHLCVKY 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546390|ref|XP_003541609.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 113/155 (72%), Gaps = 2/155 (1%)

Query: 7   EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
           + +  S   LYE SLRG+V  L+TL+  D LIL K SLT+  ETPLHISALLGHLDFTK+
Sbjct: 5   DQENGSLSALYEVSLRGNVSELDTLIGRDPLILHKLSLTTFTETPLHISALLGHLDFTKS 64

Query: 67  LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAM 125
           LL HKP+LA ELD  K +PLHLA+A+GHV+IV  LL   ++ ACL++DQDGRIP+H AAM
Sbjct: 65  LLRHKPQLALELDHSKRTPLHLASAQGHVEIVHVLLQTYHEHACLMSDQDGRIPIHYAAM 124

Query: 126 RGRVEVVQELISANFDSALV-KFHGDTVLHFKAEH 159
           RGR E+ ++LI A  +S +V    G TVLH   EH
Sbjct: 125 RGRTEIARQLIMAKPESLMVLDGSGKTVLHLCVEH 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560683|ref|XP_002521355.1| protein binding protein, putative [Ricinus communis] gi|223539433|gb|EEF41023.1| protein binding protein, putative [Ricinus communis]

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/154 (59%), Positives = 107/154 (69%), Gaps = 3/154 (1%)

Query: 10  EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69
           EDS   LYEA+ RG + +LNTL+Q D LIL + SLTS  +TPLH+SALLGHL FT  +L 
Sbjct: 4   EDSA-LLYEAAARGCMTTLNTLIQKDKLILHRVSLTSFTDTPLHVSALLGHLCFTITILE 62

Query: 70  HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
             P LA ELD  + SPLHLA+AEGH +IVK LL     ACL  DQDGRIPLHLAAMRGR+
Sbjct: 63  LNPGLASELDFRQRSPLHLASAEGHTEIVKALLRVRDGACLARDQDGRIPLHLAAMRGRI 122

Query: 130 EVVQELISANFDSALVKFHGDTVLHF--KAEHLS 161
           +V+QEL++A   S      GDTVLH   K  HL 
Sbjct: 123 QVIQELVTACPASVSELLDGDTVLHLCVKYNHLG 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560685|ref|XP_002521356.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223539434|gb|EEF41024.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
           + D    L + SLRG V +L  L+Q D LIL + S+T   ETPLHI+A+LGHL F +ALL
Sbjct: 11  ETDQLMILCKVSLRGDVPALEALLQEDELILDRASVTCFHETPLHIAAMLGHLHFARALL 70

Query: 69  NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
           + KP+L+ ELDS +  PLHLA+AEG++ IVKELL A+ DAC   DQ+GRIPLHLAA++GR
Sbjct: 71  SRKPKLSNELDSHRRLPLHLASAEGYLDIVKELLDASPDACSARDQEGRIPLHLAAIKGR 130

Query: 129 VEVVQELISANFDSALVKF-HGDTVLHFKAEH 159
           +++++EL+    DS   K  HG T+LH   E+
Sbjct: 131 IDIMKELLRICPDSMTEKLDHGKTILHLCVEY 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560687|ref|XP_002521357.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223539435|gb|EEF41025.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 1/154 (0%)

Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
           + D    L + SLRG V +L  L+Q D LIL + S+T   ETPLHI+A+LGHL F +ALL
Sbjct: 11  ETDQLMILCKVSLRGDVPALEALLQEDELILDRASVTCFHETPLHIAAMLGHLHFARALL 70

Query: 69  NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
           + KP+L+ ELDS +  PLHLA+AEG++ IVKELL A+ DAC   DQ+GRIPLHLAA++GR
Sbjct: 71  SRKPKLSNELDSHRRLPLHLASAEGYLDIVKELLDASPDACSARDQEGRIPLHLAAIKGR 130

Query: 129 VEVVQELISANFDSALVKF-HGDTVLHFKAEHLS 161
           +++++EL+    +S   K  HG T+LH   E ++
Sbjct: 131 IDIMKELLRICPESMTEKLDHGKTILHLDDEFVN 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545932|ref|XP_003541387.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 94/130 (72%)

Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
           + D+   LYEASL GSV +LNTL+Q + LIL + SL+   ETPLHI++LLGHL+F +ALL
Sbjct: 10  ENDTITTLYEASLNGSVSTLNTLIQRNPLILHRVSLSPFSETPLHIASLLGHLEFCEALL 69

Query: 69  NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
             KP LA E+DS + SPLHLA AEGH ++VK LL  N D CL  D+D  +PLHLA MRG 
Sbjct: 70  KRKPSLASEVDSERRSPLHLACAEGHTEVVKALLHTNPDVCLAMDKDEMLPLHLAVMRGH 129

Query: 129 VEVVQELISA 138
           + V++EL  A
Sbjct: 130 IGVIKELTRA 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484287|ref|XP_003633093.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 100/146 (68%), Gaps = 1/146 (0%)

Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           +LYEAS  GSV SL  LM  D L L + S+T   ETPLHI+A+LGHLDF KAL+ HKP++
Sbjct: 15  RLYEASANGSVNSLKQLMAEDPLALARASVTCFDETPLHIAAMLGHLDFAKALVTHKPDM 74

Query: 75  AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
           A  +D    SPLHLA+A  +++IV  ++  N +ACL+ D+DGR PLHLA M+G VEV +E
Sbjct: 75  AMAIDLQGRSPLHLASANVYIEIVXHVMSLNSNACLICDEDGRTPLHLAVMKGHVEVTRE 134

Query: 135 LISANFDSALVKF-HGDTVLHFKAEH 159
           L+ A  ++   K  HG+T+LH    H
Sbjct: 135 LVRARPEATGHKLDHGETILHSAVRH 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835216|emb|CAN67796.1| hypothetical protein VITISV_038914 [Vitis vinifera]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 99/146 (67%), Gaps = 1/146 (0%)

Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           +LYEAS+ GSV SL  LM  D L L + S+T   ETPLHI+A+LGHLD  KAL +HKP++
Sbjct: 28  RLYEASVDGSVNSLKQLMAEDPLSLARASVTCFDETPLHITAMLGHLDLAKALASHKPDM 87

Query: 75  AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
           A  +D    SPLHLA+A GH++IV  LL  N + CL+ D+DGR PLHLA M+G VEV +E
Sbjct: 88  AMAIDLQGPSPLHLASANGHIEIVNMLLSLNSNKCLIYDEDGRTPLHLAVMKGHVEVTRE 147

Query: 135 LISANFDSALVKF-HGDTVLHFKAEH 159
           L+ A  +    K  HG+T+LH    H
Sbjct: 148 LVRARPEVTGHKLDHGETILHSSVRH 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444811|ref|XP_002278625.1| PREDICTED: uncharacterized protein LOC100252554 [Vitis vinifera]

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 101/150 (67%), Gaps = 5/150 (3%)

Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           +LYEAS+ GSV SL  LM+ D L L + S+T   ETPLHI+A+LGHLDF KAL +HKP++
Sbjct: 17  RLYEASVDGSVNSLKQLMKEDPLALARASVTCFDETPLHIAAMLGHLDFAKALASHKPDM 76

Query: 75  A----KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
           A      +D    SPLHLA+A GH++IV  LL  N + CL+ D+DGR PLHLA M+G VE
Sbjct: 77  AMIMTTAIDLQGRSPLHLASANGHIEIVNILLSLNSNICLICDEDGRTPLHLAVMKGHVE 136

Query: 131 VVQELISANFDSALVKF-HGDTVLHFKAEH 159
           V +EL+ A  +    K  HG+T+LH    H
Sbjct: 137 VTRELVRARPEVTGHKLDHGETILHSSVRH 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.566	0.328	0.340	6e-15
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.534	0.306	0.360	1.7e-14
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.708	0.382	0.275	5.3e-14
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.578	0.263	0.315	1.3e-13
ZFIN|ZDB-GENE-030728-7	1614	trpn1 "transient receptor pote	0.562	0.086	0.331	3.6e-13
UNIPROTKB|Q92625	1134	ANKS1A "Ankyrin repeat and SAM	0.627	0.136	0.335	6.2e-13
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.578	0.075	0.348	7e-13
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.566	0.314	0.312	1.1e-12
UNIPROTKB|F1MPD8	259	LOC516896 "Uncharacterized pro	0.599	0.571	0.329	1.2e-12
UNIPROTKB|F1MHL2	1138	ANKS1A "Uncharacterized protei	0.627	0.136	0.329	1.3e-12

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 48/141 (34%), Positives = 76/141 (53%)

Query:    15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
             KL   +  GSV  L +L+Q+   IL+K  +  +  TPLH ++  G LD    L+  KP  
Sbjct:     4 KLLLVTQSGSVDDLYSLIQAAPDILQKVDVLPIIHTPLHEASSAGKLDLAMELMILKPSF 63

Query:    75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
             AK+L+    SPLHLA     V++  EL+  +     +  + G  PLHL A +G V+++ +
Sbjct:    64 AKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDLLTD 123

Query:   135 LISANFDSAL-VKFHGDTVLH 154
              + A  +S   V  +G+T+LH
Sbjct:   124 FLLACPESIKDVNVNGETILH 144

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 48/133 (36%), Positives = 68/133 (51%)

Query:    23 GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82
             G+V +L  L+  D  IL+   +     TPLH ++  G  D    L+  KP  AK+L+S  
Sbjct:    12 GNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLKPTFAKKLNSDG 71

Query:    83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
              SPLHLA     VQ+  EL+  N D  LVA + G  PLHL   +G   ++ E + A  +S
Sbjct:    72 VSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDANLLTEFLLACPES 131

Query:   143 AL-VKFHGDTVLH 154
                   +G+T LH
Sbjct:   132 IKDTNVNGETALH 144

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 49/178 (27%), Positives = 85/178 (47%)

Query:    16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
             L  A+  G++  L  L+  D  +L KT       TPLH++A+ G  +F   ++N KP  A
Sbjct:     6 LEAAAKSGNIDLLYELIHEDPYVLDKTDHVPFVNTPLHVAAVNGKTEFAMEMMNLKPSFA 65

Query:    76 KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
             ++L++   +PLHLA   GH  +V E++  +     +  + G  PL +A  R +++++ E 
Sbjct:    66 RKLNADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLLVAVSRKKIDLMSEF 125

Query:   136 ISANFDSAL-VKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETR 192
                  +S +    +G+  LH    +     + L S     + W L +C      IETR
Sbjct:   126 FLGCPESIVDANVNGENALHIAVNNYDQ-REGL-SVLKVLMGWILRLCQKDAEWIETR 181

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 46/146 (31%), Positives = 81/146 (55%)

Query:     9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
             D  +T  L+ A+ +G    +N L++  S +       S  +T LH ++  GH+   KALL
Sbjct:   132 DLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAK--SNGKTALHSASRNGHVKVIKALL 189

Query:    69 NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
               +P +A  +D    + LH+A    +V++V+EL+ A++ +  +AD  G   LH+AA +GR
Sbjct:   190 ASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGR 249

Query:   129 VEVVQELISANF-DSALVKFHGDTVL 153
              ++V+ L++ N  D+  V   G+T L
Sbjct:   250 SQIVKLLLANNMTDTKAVNRSGETAL 275

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030728-7 trpn1 "transient receptor potential cation channel, subfamily N, member 1" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 48/145 (33%), Positives = 77/145 (53%)

Query:    16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
             L+ ++  GS R +  L+++    +   SL   ++TPLH++A+ G LD   +LLN + ++ 
Sbjct:   649 LHLSAQNGSARLVRLLVENHQASVDALSLR--KQTPLHLAAMSGQLDVCSSLLNLRADIT 706

Query:    76 KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
                DS   +PLHLAA   H ++VK  L    +   +A++DG    H+AA +G V V++EL
Sbjct:   707 AT-DSRGQTPLHLAAESDHSEVVKLFLRLRPELSTLANEDGSTCTHIAAAKGSVSVIREL 765

Query:   136 ISANFDSALV---KFHGDTVLHFKA 157
             +  N         K HG   LH  A
Sbjct:   766 LMFNQGGVGTLNHKAHGLCPLHLAA 790

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q92625 ANKS1A "Ankyrin repeat and SAM domain-containing protein 1A" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 54/161 (33%), Positives = 82/161 (50%)

Query:     7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
             E + D+   L+ A+  G    +  L++    +   T   +  ETPL ++AL G L+  K 
Sbjct:   144 EQNNDNETALHCAAQYGHTEVVKVLLEE---LTDPTMRNNKFETPLDLAALYGRLEVVKM 200

Query:    67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
             LLN  P L    ++ KH+PLHLAA  GH  +V+ LL A  D+    +      LH AA+ 
Sbjct:   201 LLNAHPNLLS-CNTKKHTPLHLAARNGHKAVVQVLLDAGMDSNYQTEMGSA--LHEAALF 257

Query:   127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
             G+ +VVQ L++A  D  +   HG T L    E  S  +Q++
Sbjct:   258 GKTDVVQILLAAGTDVNIKDNHGLTALDTVRELPSQKSQQI 298

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=ISS

GO:0016322 "neuron remodeling" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

GO:0043005 "neuron projection" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 7.0e-13, P = 7.0e-13
 Identities = 53/152 (34%), Positives = 78/152 (51%)

Query:    10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLR-ETPLHISALLGHLDFTKALL 68
             E     L+ AS  G +  +  L+Q D+      ++++++ ETPLH++A  GH +  K LL
Sbjct:   435 ESGLTPLHVASFMGHLPIVKNLLQRDA----SPNVSNVKVETPLHMAARAGHTEVAKYLL 490

Query:    69 NHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
              +K ++ AK  D    +PLH AA  GH  +VK LLL N     +A   G  PLH+AA  G
Sbjct:   491 QNKAKVNAKAKDD--QTPLHCAARIGHTNMVK-LLLENNANPNLATTAGHTPLHIAAREG 547

Query:   128 RVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
              VE    L+      A +   G T LH  A++
Sbjct:   548 HVETALALLEKGASQACMTKKGFTPLHVAAKY 579

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 44/141 (31%), Positives = 69/141 (48%)

Query:    15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
             +L  A+  GS+  L   +  +  IL          TPLHI++  G+L F   L+N KP  
Sbjct:     4 RLIVATQIGSIDELYAHIHENPYILEIIDAIPFINTPLHIASASGNLSFAMELMNLKPSF 63

Query:    75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
             A++L++   SPLHLA  EG  ++V  LL  + D   +  ++G  P H    RG  +++ E
Sbjct:    64 ARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDLMTE 123

Query:   135 LISANFDSAL-VKFHGDTVLH 154
              + A          +G+T LH
Sbjct:   124 FLLACPGCIKDANVNGETALH 144

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MPD8 LOC516896 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 51/155 (32%), Positives = 80/155 (51%)

Query:     7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
             +++E+ T  L+ A+  G    +  L++    +   T   S  ETPL ++AL G L   K 
Sbjct:    85 QNNENET-ALHCAAQYGHSEVVAVLLEE---LTDPTIRNSKLETPLDLAALYGRLRVVKM 140

Query:    67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
             +++  P L    ++ KH+PLHLAA  GH  +V+ LL A  D     ++     LH AA+ 
Sbjct:   141 IISAHPNLMS-CNTRKHTPLHLAARNGHKAVVQVLLEAGMDVSCQTEKGSA--LHEAALF 197

Query:   127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS 161
             G+V+VV+ L+    D+ +    G TVL    EH S
Sbjct:   198 GKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPS 232

GO:0046875 "ephrin receptor binding" evidence=IEA

UNIPROTKB|F1MHL2 ANKS1A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 53/161 (32%), Positives = 82/161 (50%)

Query:     7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
             E + D+   L+ A+  G    +  L++    +   T   +  ETPL ++AL G L+  K 
Sbjct:   148 EQNNDNETALHCAAQYGHTEVVKVLLEE---LTDPTMRNNKFETPLDLAALYGRLEVVKM 204

Query:    67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
             LLN  P L    ++ KH+PLHLAA  GH  +V+ LL A  D+    ++     LH AA+ 
Sbjct:   205 LLNAHPNLLS-CNTKKHTPLHLAARNGHKAVVQVLLDAGMDSSYQTEKGSA--LHEAALF 261

Query:   127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
             G+ +VVQ L++A  D  +    G T L    E  S  +Q++
Sbjct:   262 GKTDVVQILLAAGIDVNIKDNRGLTALDTVRELPSQKSQQI 302

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-04
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 6e-22
 Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            TPLH++A  GHL+  K LL +  ++    D+   +PLHLAA  GH++IVK LL    D 
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
               D+DG  PLHLAA  G ++VV+ L+    D       G T LH
Sbjct: 67  NAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLH 111

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.6 bits (194), Expect = 1e-18
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 5/121 (4%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           L+ A+  G +  +  L+++ + +  K +      TPLH++A  GHL+  K LL    ++ 
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKDND---GRTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
              D   ++PLHLAA  G++ +VK LL    D     D+DGR PLHLAA  G +EVV+ L
Sbjct: 68  AR-DKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLL 125

Query: 136 I 136
           +
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 72.7 bits (179), Expect = 9e-17
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 52  LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLV 111
           LH++A  G+L+  K LL    ++    D    + LHLAA  G+++IVK LL    D    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV-NLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 112 ADQDGRIPLHLAAMRGRVEVVQELISANFD 141
            D+DG   LHLAA  G +E+V+ L+    D
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D    +PLHLAA+ GH+++VK LL    D     D DGR PLHLAA  G +E+V+ L+  
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 139 NFDSALVKFHGDTVLH 154
             D       G+T LH
Sbjct: 63  GADVNARDKDGNTPLH 78

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 86  LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALV 145
           LHLAA  G++++VK LL    D   V   D    LHLAA  G +E+V+ L+    D    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 146 KFHGDTVLHF 155
              G+T LH 
Sbjct: 58  DKDGNTALHL 67

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           L+ A+  G++  +  L++  + +          +T LH++A  G+L+  K LL H  ++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD-----TDTALHLAARNGNLEIVKLLLEHGADV- 54

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLV 111
              D   ++ LHLAA  G+++IVK LL    D  L 
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.4 bits (130), Expect = 7e-09
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 13/166 (7%)

Query: 6   REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLT-----SLRETPLHISALLGH 60
               + S     + +L   +  L     S+ L+                 PLH +A  G 
Sbjct: 26  LLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGD 85

Query: 61  LDFTKALLNHKPELAKELDSLKHSPLHLAAAEGH-----VQIVKELLLANKDACLVADQD 115
               K LL    ++    D+   +PLHLAA  G+     +++ K LL A  D  +   +D
Sbjct: 86  DKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD 144

Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
             G  PLH AA+ G  ++V+ L+ A  D      +G T L   A++
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN 190

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 6   REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISAL-----LGH 60
              D D    L+ A+ +G  + +  L+ S + +  K +     +TPLH++AL      G+
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADG---DTPLHLAALNGNPPEGN 123

Query: 61  LDFTKALLNHKPELAK--ELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRI 118
           ++  K LL    +L      D   ++PLH AA  G   IV ELLL         +  G  
Sbjct: 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV-ELLLEAGADPNSRNSYGVT 182

Query: 119 PLHLAAMRGRVEVVQELISANFDSALVKF 147
            L  AA  GR+E+V+ L+      +L+KF
Sbjct: 183 ALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI 136
            + LH AA  G +++VK LL    D     D+DG   LH+AA  G +EV++ L+
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           D+DGR PLHLAA  G +EVV+ L+    D       G T LH  A++
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN 50

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 16  LYEASLRGSVRSLNTLMQS----DSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK 71
           L++A   G V+++  L+      D +  +         TPLH++ +L  LD  K L+   
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGM------TPLHLATILKKLDIMKLLIARG 125

Query: 72  --PELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
             P++    ++ K SPLHLA   G ++ + ELL+ +K    + D  G  PL +A  +G +
Sbjct: 126 ADPDIP---NTDKFSPLHLAVMMGDIKGI-ELLIDHKACLDIEDCCGCTPLIIAMAKGDI 181

Query: 130 EVVQELISANFDSALVKFHGDTVL 153
            + + L+ +  +      +G    
Sbjct: 182 AICKMLLDSGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           +PLH+A A GHVQ+V+ LL    D  L+ D+DG+ PL LA   G  EVVQ L  
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           S LH A  EG V+ V+ELL   K A  V  +DG  PLHLA +  ++++++ LI+   D  
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129

Query: 144 LVKFHGDTVLHF 155
           +      + LH 
Sbjct: 130 IPNTDKFSPLHL 141

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 20/55 (36%), Positives = 24/55 (43%)

Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
           LL          D +G  PLHLAA  G +E+VQ L+    D  L    G T L  
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
           T LH +A+ G L+  K LL    ++    D   ++ LH+AA  G+++++K LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 67  LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA 123
           LL H P      D   ++PLHLAA  G +++V+ LL    D   + D DG   L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 48  RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
           + +PLH++ ++G +   + L++HK  L  E D    +PL +A A+G + I K LL +  +
Sbjct: 135 KFSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGAN 193

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALV 145
                       L  A    ++++V+  I    D  ++
Sbjct: 194 IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM 231

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 115 DGRIPLHLAAMRGRVEVVQELISAN 139
           DG  PLHLAA  G +EVV+ L+ A 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 50  TPLHI--SALLGHLDFTKALLNHKPELAKELDSLKHSPLH--LAAAEGHVQIVKELLLAN 105
           TPLH+  S    +    + LL    ++   LD    +PL   L +   +V++++ L+ A 
Sbjct: 119 TPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAG 177

Query: 106 KDACLVADQDGRIPLH--LAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS 161
            D   V D   R  LH  L + + R  +V+ELI A  D A     G+T LH  A   S
Sbjct: 178 ADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS 234

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 87  HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK 146
            LAA+   V     +LL         D DGR PLH+A   G V+VV+ L+    D  L+ 
Sbjct: 88  QLAASGDAVGA--RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 147 FHGDTVLHFKAE 158
             G T L    E
Sbjct: 146 KDGKTPLELAEE 157

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 115 DGRIPLHLAAMRGRVEVVQELISANFD 141
           DGR PLHLAA  G +EVV+ L+    D
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLV 111
           ++PLHLAA  GH+++VK LL A  D    
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02792	631	ankyrin-like protein; Provisional	99.88
PHA02792	631	ankyrin-like protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.69
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.18
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.0
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.99
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.96
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.95
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.93
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.85
PF13606	30	Ank_3: Ankyrin repeat	98.83
KOG0522	560	consensus Ankyrin repeat protein [General function	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.77
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.71
PF13606	30	Ank_3: Ankyrin repeat	98.69
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
KOG0522	560	consensus Ankyrin repeat protein [General function	98.63
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.62
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.45
KOG2384	223	consensus Major histocompatibility complex protein	98.35
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.29
KOG0511	516	consensus Ankyrin repeat protein [General function	98.27
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.25
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.23
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.15
KOG0511	516	consensus Ankyrin repeat protein [General function	98.14
KOG2384	223	consensus Major histocompatibility complex protein	98.12
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.04
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.08
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.91
KOG2505	591	consensus Ankyrin repeat protein [General function	96.88
KOG2505	591	consensus Ankyrin repeat protein [General function	96.58
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.73
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.46
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.13
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.74
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.25

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-37  Score=219.54  Aligned_cols=177  Identities=25%  Similarity=0.235  Sum_probs=150.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhc-CCcchhcccCCCCcHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSPLH   87 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~   87 (247)
                      |.+|+|||||||+.|+.+++++|++.-.  ...+.+|+.|+||||.|+..|+.++|+.|+.+ ++++ +.....|+|+||
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~n--v~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LH  111 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPN--VKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLH  111 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCC--CCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceeh
Confidence            4489999999999999999999996322  23366788899999999999999999999998 7777 888899999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876           88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL  167 (247)
Q Consensus        88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  167 (247)
                      +|+..|..+++++|+..|+.+ +.+|..|.||||-|+.-|..+++++|+..|+.+|.+|..|+||||.|...++.++..+
T Consensus       112 yAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~l  190 (226)
T KOG4412|consen  112 YAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVL  190 (226)
T ss_pred             hhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHH
Confidence            999999999999999999887 7899999999999999999999999999999999999999999999988889888888


Q ss_pred             cccccccccccCCccchhhHHH
Q 025876          168 PSNYAAWLDWTLSICYPKHLTI  189 (247)
Q Consensus       168 l~~~~~~~~~~~~g~~pl~~a~  189 (247)
                      |.+.++.........||+..+.
T Consensus       191 LV~~gAd~~~edke~t~~~~a~  212 (226)
T KOG4412|consen  191 LVRAGADTDREDKEGTALRIAC  212 (226)
T ss_pred             HHHhccceeeccccCchHHHHH
Confidence            8877765544443338877665

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-35  Score=231.44  Aligned_cols=198  Identities=20%  Similarity=0.171  Sum_probs=172.8

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      -+++.+|.+|.||||+|+..|+.++++.|++.++...   ..+  +.||||+|+..|+.+++++|++.|+++ +..|..|
T Consensus        21 ~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n---~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G   94 (284)
T PHA02791         21 KDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKN---LLE--NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKG   94 (284)
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc---CCC--CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            4677899999999999999999999999999998663   333  789999999999999999999999998 8889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCC-cHHHHHHhcCcHHHHHHHHHcCCCccccc-cCCCcHHHHHHhcC
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGR-IPLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFKAEHL  160 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~  160 (247)
                      .||||+|+..|+.+++++|+.+++++ +..+..|+ ||||+|+..|+.+++++|++++.+.  .+ ..|.||||+|+..|
T Consensus        95 ~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g  171 (284)
T PHA02791         95 NTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNG  171 (284)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcC
Confidence            99999999999999999999999988 56777775 8999999999999999999976543  23 35899999999999


Q ss_pred             Ccceeecccccccc-ccccCCccch-hhHHHhhcccceeeccccCCChhhh
Q 025876          161 SLCTQRLPSNYAAW-LDWTLSICYP-KHLTIETRGAVAILMMPSVGGITFF  209 (247)
Q Consensus       161 ~~~~~~~l~~~~~~-~~~~~~g~~p-l~~a~~~~~~~~~~~l~~~~~~~~~  209 (247)
                      +.+++++|+++++. ...+..|.|| ||+|+..+....+..|++.+.....
T Consensus       172 ~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~  222 (284)
T PHA02791        172 HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYS  222 (284)
T ss_pred             CHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc
Confidence            99999999988874 4445568876 9999999999999988877655433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-36  Score=211.68  Aligned_cols=189  Identities=24%  Similarity=0.254  Sum_probs=159.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHHhcCCHHHHHHHHhc-CCcchhcccCCCCcHHHHH
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSPLHLA   89 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A   89 (247)
                      +.++.+.++......-++.++++.+ ..+.++.+  +|+|||||||..|+.+++.+|+.. +..+ +.+|..|+||||+|
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dq--D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia   79 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQ--DGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIA   79 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccc--cCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhh
Confidence            4567788888888888999998877 34333333  499999999999999999999964 4444 77899999999999


Q ss_pred             HhcCCHHHHHHHHHc-CCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876           90 AAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        90 ~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      ++.|+.++|+.|+.+ ++++ +..+..|+||||||+..|..+++++|++.|+.++.+|..|.||||.|+..|..+++++|
T Consensus        80 ~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHH
Confidence            999999999999999 7777 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc-cccCCccchhhHHHhhcccceeeccccCC
Q 025876          169 SNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVG  204 (247)
Q Consensus       169 ~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  204 (247)
                      +..++.. ..|..|+||||.|...+......+|...+
T Consensus       159 i~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  159 ISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             HhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            8877754 45558999999995444444444444443

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3e-33  Score=235.40  Aligned_cols=187  Identities=17%  Similarity=0.156  Sum_probs=166.3

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC--CHHHHHHHHhcCCcchhcccC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG--HLDFTKALLNHKPELAKELDS   80 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~   80 (247)
                      .++|.+|..|.||||+|+..|+.+++++|++.|+++   +.+|..|.||||+|+..+  ..+++++|++.|+++....+.
T Consensus        63 advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi---n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~  139 (446)
T PHA02946         63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP---NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE  139 (446)
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC---CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC
Confidence            478899999999999999999999999999999887   567888999999999876  489999999999998445789


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCccccccCCCcHHHHHHh
Q 025876           81 LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG--RVEVVQELISANFDSALVKFHGDTVLHFKAE  158 (247)
Q Consensus        81 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~  158 (247)
                      .|.|||| |+..|+.+++++|+..|+++ +..|..|+||||+|+..+  +.+++++|++.|++++.+|..|.||||+|+.
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~  217 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCS  217 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            9999997 66679999999999999988 789999999999988754  5789999999999999999999999999998


Q ss_pred             cC--CcceeeccccccccccccCCccchhhHHHhhccc
Q 025876          159 HL--SLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGA  194 (247)
Q Consensus       159 ~~--~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~  194 (247)
                      .+  +.+++++|+...+....+..|.||||+|+...+.
T Consensus       218 ~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        218 KTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             cCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCh
Confidence            76  6788898887666777778999999999987653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.3e-33  Score=233.16  Aligned_cols=203  Identities=19%  Similarity=0.144  Sum_probs=178.5

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..+..|.||||+|+..|+.+++++|++.|+.+   +..+..+.||||.|+..|+.+++++|++.|....+..+..|
T Consensus        26 ~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  102 (413)
T PHA02875         26 INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP---DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG  102 (413)
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC
Confidence            467788889999999999999999999999999866   33445689999999999999999999999987756667889


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~  181 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI  181 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999998 78899999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccccccccc-cCCc-cchhhHHHhhcccceeeccccCCChhhh
Q 025876          163 CTQRLPSNYAAWLDW-TLSI-CYPKHLTIETRGAVAILMMPSVGGITFF  209 (247)
Q Consensus       163 ~~~~~l~~~~~~~~~-~~~g-~~pl~~a~~~~~~~~~~~l~~~~~~~~~  209 (247)
                      +++++|++.|+.... +..| .+|+|+|+..+....+..|++.+.....
T Consensus       182 eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        182 AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            999999888775543 3344 5899999999888888888877665543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-32  Score=230.24  Aligned_cols=234  Identities=17%  Similarity=0.207  Sum_probs=184.6

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc----------
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL----------   74 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~----------   74 (247)
                      ++..+..|.||||.|+..|+.+++++|++.|+++   +..+..|.||||.|+..|+.+++++|++.|+++          
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~---n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~  104 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADI---NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEK  104 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCH
Confidence            5667788999999999999999999999999877   455667999999999999999999999877542          


Q ss_pred             ------------hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCc
Q 025876           75 ------------AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS  142 (247)
Q Consensus        75 ------------~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  142 (247)
                                  .+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|+++
T Consensus       105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~  183 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA  183 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC
Confidence                        1456788999999999999999999999999988 788999999999999999999999999999999


Q ss_pred             cccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceee-------ccccCCChhhhHHhhh
Q 025876          143 ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAIL-------MMPSVGGITFFQESFA  214 (247)
Q Consensus       143 ~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~-------~l~~~~~~~~~~~~~~  214 (247)
                      +..+..|.||||+|+..|+.+++++|++.++.. ..+..|.||+|.|+..+......       ...+..|.++++.+..
T Consensus       184 n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        184 NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHh
Confidence            999999999999999999999999998877643 44457899999998755432211       1234557777777765


Q ss_pred             hh-hhhhhccccCC---CCCCCCCCCcccccc
Q 025876          215 ER-SLIVVTEEVDY---PDGDNSRRNLPISRW  242 (247)
Q Consensus       215 ~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~  242 (247)
                      .. ...++..++..   .......+.+|+..+
T Consensus       264 ~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        264 PPCDIDIIDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             cCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            43 33444433332   222334445665433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=225.63  Aligned_cols=184  Identities=29%  Similarity=0.309  Sum_probs=111.8

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      +.+..|++|.++||||+-++..+++++|+++|++++...-  .-+.||||+|++.|+..++++|+++|+++ ..+|..|.
T Consensus        70 ~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG--~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~  146 (600)
T KOG0509|consen   70 SVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG--VLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGL  146 (600)
T ss_pred             CCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC--CCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCC
Confidence            4555666666666666666666666666666665532211  33566666666666666666666666666 56666666


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccc-cCCCcHHHHHHhcCCc
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFKAEHLSL  162 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A~~~~~~  162 (247)
                      +|+|+|+.+|+.-.+-+|+..+.++ +..|.+|+||||+|+..|+...+..|+..++.+...| ..|.||||+|+..|+.
T Consensus       147 ~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~  225 (600)
T KOG0509|consen  147 TPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNL  225 (600)
T ss_pred             cHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCc
Confidence            6666666666666666666666555 5666666666666666666555666666666666664 6666666666666666


Q ss_pred             ceeeccccccccccccC-CccchhhHHHhh
Q 025876          163 CTQRLPSNYAAWLDWTL-SICYPKHLTIET  191 (247)
Q Consensus       163 ~~~~~l~~~~~~~~~~~-~g~~pl~~a~~~  191 (247)
                      .++.++++.++..+..+ +|.||+..|.+.
T Consensus       226 ~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  226 TAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            66665555554433333 456666666544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-32  Score=228.61  Aligned_cols=213  Identities=20%  Similarity=0.162  Sum_probs=184.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHh
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA   91 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~   91 (247)
                      .+++||.|+..|+.+++++|++.|+++   +..+..|.||||+|+..|+.+++++|++.|+.+ +..+..+.||||.|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~---n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP---NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHH
Confidence            578999999999999999999999877   445567999999999999999999999999987 6778889999999999


Q ss_pred             cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876           92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus        92 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      .|+.+++++|+..++......+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999877666778899999999999999999999999999999999999999999999999999999888


Q ss_pred             cccc-cccCCccchhhHHHhhcccceeeccccCCC----------hhhhHHhhhhhhhhhhccccCCC
Q 025876          172 AAWL-DWTLSICYPKHLTIETRGAVAILMMPSVGG----------ITFFQESFAERSLIVVTEEVDYP  228 (247)
Q Consensus       172 ~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  228 (247)
                      +... ..+..|.||||+|+..+....+..|++.+.          .+++..+...+...++..++...
T Consensus       158 g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g  225 (413)
T PHA02875        158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG  225 (413)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence            7644 456689999999999888877777665433          35555566666666666655543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-32  Score=214.70  Aligned_cols=170  Identities=12%  Similarity=-0.007  Sum_probs=150.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC-CcHHHH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK-HSPLHL   88 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~   88 (247)
                      .++.||||+|+..|+.++++.|++.|+++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..| .||||+
T Consensus        59 ~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv---n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~  134 (284)
T PHA02791         59 LENEFPLHQAATLEDTKIVKILLFSGMDD---SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYH  134 (284)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHH
Confidence            35789999999999999999999999877   556788999999999999999999999999998 6677777 589999


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcH-HHHHHhcCCcceeec
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV-LHFKAEHLSLCTQRL  167 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~  167 (247)
                      |+..|+.+++++|+..++...  ....|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+++++
T Consensus       135 Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        135 AVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHHcCCHHHHHHHHhcCCccc--ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            999999999999999876542  11358999999999999999999999999999999999987 999999999999999


Q ss_pred             cccccccccccCCccchh
Q 025876          168 PSNYAAWLDWTLSICYPK  185 (247)
Q Consensus       168 l~~~~~~~~~~~~g~~pl  185 (247)
                      |+.+++.......+.+|+
T Consensus       213 Ll~~Ga~in~~~~~~~~l  230 (284)
T PHA02791        213 LFKYDINIYSVNLENVLL  230 (284)
T ss_pred             HHHCCCCCccCcccCccC
Confidence            999988766655555666

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.9e-32  Score=228.00  Aligned_cols=210  Identities=22%  Similarity=0.176  Sum_probs=176.4

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhh--------------------hccccccCCCcHHHHHHhcCCHH
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLIL--------------------RKTSLTSLRETPLHISALLGHLD   62 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~--------------------~~~~~~~~g~t~L~~A~~~g~~~   62 (247)
                      .+++..+..|.||||.|+..|+.+++++|++.|.+..                    ..+..+..|.||||+|+..|+.+
T Consensus        59 a~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~  138 (434)
T PHA02874         59 ADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLE  138 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHH
Confidence            3567788889999999999999999999998875431                    12345677999999999999999


Q ss_pred             HHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCc
Q 025876           63 FTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS  142 (247)
Q Consensus        63 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  142 (247)
                      ++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.|+++
T Consensus       139 ~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i  216 (434)
T PHA02874        139 SIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI  216 (434)
T ss_pred             HHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            999999999998 888999999999999999999999999999988 688999999999999999999999999999999


Q ss_pred             cccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhc-ccceeec---------cccCCChhhhHHh
Q 025876          143 ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETR-GAVAILM---------MPSVGGITFFQES  212 (247)
Q Consensus       143 ~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~-~~~~~~~---------l~~~~~~~~~~~~  212 (247)
                      +..+..|.||||.|+..+. +.+++|+...+....+..|.||||+|+... ....+..         ..+..|.+++..+
T Consensus       217 ~~~~~~g~TpL~~A~~~~~-~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        217 MNKCKNGFTPLHNAIIHNR-SAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             cCCCCCCCCHHHHHHHCCh-HHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            9999999999999998765 556666666667777889999999999754 3333333         3455667777666


Q ss_pred             hhh
Q 025876          213 FAE  215 (247)
Q Consensus       213 ~~~  215 (247)
                      ...
T Consensus       296 ~~~  298 (434)
T PHA02874        296 FKY  298 (434)
T ss_pred             HHh
Confidence            543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1e-31  Score=230.10  Aligned_cols=199  Identities=21%  Similarity=0.206  Sum_probs=143.6

Q ss_pred             CccccCCCCchHHHHHH--HcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC--CHHHHHHHHhcCCcchhccc
Q 025876            4 GAREHDEDSTHKLYEAS--LRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG--HLDFTKALLNHKPELAKELD   79 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~   79 (247)
                      +++..|..|.||||+|+  ..|+.+++++|++.|+++   +..+..|.||||+|+..|  +.+++++|++.|+++ +..+
T Consensus        98 ~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d  173 (480)
T PHA03100         98 NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV---NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKN  173 (480)
T ss_pred             CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-cccc
Confidence            44666777777777777  777777777777777665   444566777777777777  777777777777776 6666


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCC------CcHHHHHHhcCc--HHHHHHHHHcCCCccccccCCCc
Q 025876           80 SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDG------RIPLHLAAMRGR--VEVVQELISANFDSALVKFHGDT  151 (247)
Q Consensus        80 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g------~t~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~g~t  151 (247)
                      ..|.||||+|+..|+.+++++|++.|+++ +..+..|      .||||+|+..|+  .+++++|++.|++++.+|..|.|
T Consensus       174 ~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~T  252 (480)
T PHA03100        174 RYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFT  252 (480)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            77777777777777777777777777776 4566666      677777777777  77777777777777777777777


Q ss_pred             HHHHHHhcCCcceeeccccccc-cccccCCccchhhHHHhhcccceeeccccCCChh
Q 025876          152 VLHFKAEHLSLCTQRLPSNYAA-WLDWTLSICYPKHLTIETRGAVAILMMPSVGGIT  207 (247)
Q Consensus       152 ~l~~A~~~~~~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  207 (247)
                      |||+|+..++.+++++|++.++ ....+..|.||+|+|+..+....+..+++.+...
T Consensus       253 pL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        253 PLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI  309 (480)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCH
Confidence            7777777777777777766665 3334456777777777777766666666665533

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.1e-31  Score=229.31  Aligned_cols=200  Identities=17%  Similarity=0.113  Sum_probs=161.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHH-------------------------
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLD-------------------------   62 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-------------------------   62 (247)
                      .+..+.||||.|+..|+.+++++|++.|+++   +..|..|.||||+||..|+.+                         
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv---n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~  109 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNV---NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAF  109 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHH
Confidence            4456889999999999999999999999877   556778999999999876654                         


Q ss_pred             ---------------------------------------HHHHHHhcCCcchhcccCC-CCcHHHHHHhcCCHHHHHHHH
Q 025876           63 ---------------------------------------FTKALLNHKPELAKELDSL-KHSPLHLAAAEGHVQIVKELL  102 (247)
Q Consensus        63 ---------------------------------------~~~~Ll~~~~~~~~~~~~~-g~t~l~~A~~~g~~~~~~~Ll  102 (247)
                                                             ++++|++.|+++ +..+.. |.||||+|+..|+.+++++|+
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence                                                   444555556665 556666 999999999999999999999


Q ss_pred             HcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhc-CCcceeeccccccccccccC--
Q 025876          103 LANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH-LSLCTQRLPSNYAAWLDWTL--  179 (247)
Q Consensus       103 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~-~~~~~~~~l~~~~~~~~~~~--  179 (247)
                      ..|+++ +..+..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. ++.+++++|++.++......  
T Consensus       189 ~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~  267 (477)
T PHA02878        189 SYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI  267 (477)
T ss_pred             HCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC
Confidence            999988 78899999999999999999999999999999999999999999999975 68899998888887554433  


Q ss_pred             CccchhhHHHhhcccceeec---------cccCCChhhhHHhhh
Q 025876          180 SICYPKHLTIETRGAVAILM---------MPSVGGITFFQESFA  214 (247)
Q Consensus       180 ~g~~pl~~a~~~~~~~~~~~---------l~~~~~~~~~~~~~~  214 (247)
                      .|.||||+|+.  ....+..         ..+..|.+++..+..
T Consensus       268 ~g~TpLh~A~~--~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        268 LGLTALHSSIK--SERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCCCHHHHHcc--CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            68999999953  2233333         334556666666654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1e-31  Score=222.12  Aligned_cols=186  Identities=26%  Similarity=0.318  Sum_probs=165.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhc-CchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhccc-CCCCcHHHHHH
Q 025876           13 THKLYEASLRGSVRSLNTLMQS-DSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLHLAA   90 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~   90 (247)
                      ...++.|++.|+++.++.|++. +..+   +..|++|.++||+|+.+++.+++++|+++|+++ +..+ .-+.||||+|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v---~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAa  120 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESV---NNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAA  120 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCC---CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHH
Confidence            4568999999999999999998 6655   445677999999999999999999999999998 5544 88899999999


Q ss_pred             hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876           91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      ++|++.++++|+++|+++ ...|.+|.+|||+|+..|+..++-+|+.++++++.+|..|+||||+|+..|....++.|+.
T Consensus       121 r~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  121 RNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLK  199 (600)
T ss_pred             HcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHH
Confidence            999999999999999999 7999999999999999999999999999999999999999999999999999886776766


Q ss_pred             ccc-ccccc-CCccchhhHHHhhcccceeeccccC
Q 025876          171 YAA-WLDWT-LSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       171 ~~~-~~~~~-~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      .++ ....+ ..|+||||.|+..+....+.++++.
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g  234 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEG  234 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcceEehhhhc
Confidence            665 33444 5899999999999998888844433

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.2e-31  Score=225.69  Aligned_cols=216  Identities=20%  Similarity=0.186  Sum_probs=139.3

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHH-----HHhcCCHHHHHHHHhcCCcchhcccC
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHI-----SALLGHLDFTKALLNHKPELAKELDS   80 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~-----A~~~g~~~~~~~Ll~~~~~~~~~~~~   80 (247)
                      +..+..+.||||.|+..|+.+++++|++.|+++   +..+..+.||||+     |+..|+.+++++|++.|+++ +..+.
T Consensus        29 ~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~---~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~  104 (480)
T PHA03100         29 DYSYKKPVLPLYLAKEARNIDVVKILLDNGADI---NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDN  104 (480)
T ss_pred             hhhhcccchhhhhhhccCCHHHHHHHHHcCCCC---CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCC
Confidence            344556677777777777777777777777665   3344556777777     77777777777777777766 66677


Q ss_pred             CCCcHHHHHH--hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876           81 LKHSPLHLAA--AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG--RVEVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus        81 ~g~t~l~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      .|.||||+|+  ..|+.+++++|++.|+++ +..+..|.||||+|+..|  +.+++++|+++|++++..+..|.||||+|
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A  183 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIA  183 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHH
Confidence            7777777777  677777777777777666 566667777777777777  67777777777777777766777777777


Q ss_pred             HhcCCcceeecccccccccc-ccCCc------cchhhHHHhhcc--cceeeccc---------cCCChhhhHHhhhhhhh
Q 025876          157 AEHLSLCTQRLPSNYAAWLD-WTLSI------CYPKHLTIETRG--AVAILMMP---------SVGGITFFQESFAERSL  218 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~~-~~~~g------~~pl~~a~~~~~--~~~~~~l~---------~~~~~~~~~~~~~~~~~  218 (247)
                      +..|+.+++++|++.++... .+..|      .||+|.|+..+.  ...+..|+         +..|.++++.+...+..
T Consensus       184 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~  263 (480)
T PHA03100        184 VEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP  263 (480)
T ss_pred             HHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            77777777776666555333 22234      566666665554  33333222         33455556666555555


Q ss_pred             hhhccccC
Q 025876          219 IVVTEEVD  226 (247)
Q Consensus       219 ~~~~~~~~  226 (247)
                      .++..++.
T Consensus       264 ~iv~~Ll~  271 (480)
T PHA03100        264 EFVKYLLD  271 (480)
T ss_pred             HHHHHHHH
Confidence            55554444

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.3e-30  Score=221.19  Aligned_cols=238  Identities=18%  Similarity=0.108  Sum_probs=180.4

Q ss_pred             CCccccCCCCchHHHHHHHcC---CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC-CHHHHHHHHhcCCcchhcc
Q 025876            3 IGAREHDEDSTHKLYEASLRG---SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG-HLDFTKALLNHKPELAKEL   78 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g---~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~Ll~~~~~~~~~~   78 (247)
                      .+++..+..|.||||+|+..|   +.++++.|++.|+++   +..+..|.||||+|+..| +.+++++|++.|+++ +..
T Consensus        38 a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi---n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~  113 (471)
T PHA03095         38 ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV---NAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAK  113 (471)
T ss_pred             CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCC
Confidence            466778888999999999988   999999999999887   555667999999999999 599999999999987 888


Q ss_pred             cCCCCcHHHHHH--hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCccccccCCCcHHH
Q 025876           79 DSLKHSPLHLAA--AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG--RVEVVQELISANFDSALVKFHGDTVLH  154 (247)
Q Consensus        79 ~~~g~t~l~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~g~t~l~  154 (247)
                      +..|.||||+|+  ..++.+++++|++.|+++ +..+..|.||||+|+..+  ..+++++|+++|++++..+..|.||||
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh  192 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH  192 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            888999999998  456788999999999888 678888999999888765  578889999888888888888888888


Q ss_pred             HHHhc--CCcceeeccccccc-cccccCCccchhhHHHhhcccc--e---------eeccccCCChhhhHHhhhhhhhhh
Q 025876          155 FKAEH--LSLCTQRLPSNYAA-WLDWTLSICYPKHLTIETRGAV--A---------ILMMPSVGGITFFQESFAERSLIV  220 (247)
Q Consensus       155 ~A~~~--~~~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~~~~~--~---------~~~l~~~~~~~~~~~~~~~~~~~~  220 (247)
                      +++..  ++.+++++|+..+. ....+..|.||||+|+..+...  .         -....+..|.++++.+...+...+
T Consensus       193 ~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~  272 (471)
T PHA03095        193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA  272 (471)
T ss_pred             HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            88764  55677776665554 4455667888888888655421  1         112345667778887777766666


Q ss_pred             hccccCCCCC---CCCCCCccccccccc
Q 025876          221 VTEEVDYPDG---DNSRRNLPISRWVRS  245 (247)
Q Consensus       221 ~~~~~~~~~~---~~~~~~~~~~~~~~~  245 (247)
                      +..++.....   ....+.+|+.-+++.
T Consensus       273 v~~LL~~gad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        273 CRRLIALGADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence            6665543222   233445666554443

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=2e-30  Score=218.35  Aligned_cols=237  Identities=15%  Similarity=0.099  Sum_probs=188.2

Q ss_pred             CCccccCCCCchHHHHHHHcC--CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccC
Q 025876            3 IGAREHDEDSTHKLYEASLRG--SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDS   80 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~   80 (247)
                      .|++.+|..|.||||+|+..+  ..++++.|++.|+++..  ..|..|.|||| |+..|+.+++++|++.|+++ +..|.
T Consensus        96 Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~--~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~  171 (446)
T PHA02946         96 ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN--SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDK  171 (446)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc--ccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCC
Confidence            478899999999999999876  48999999999998732  24667999997 66779999999999999998 88999


Q ss_pred             CCCcHHHHHHhcC--CHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC--cHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876           81 LKHSPLHLAAAEG--HVQIVKELLLANKDACLVADQDGRIPLHLAAMRG--RVEVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus        81 ~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      .|.||||+|+..+  +.+++++|++.|+++ +..|..|+||||+|+..+  +.+++++|+. +++++.+|..|.||||+|
T Consensus       172 ~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A  249 (446)
T PHA02946        172 FGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLL  249 (446)
T ss_pred             CCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            9999999988765  468999999999999 789999999999999876  7899999985 899999999999999999


Q ss_pred             HhcCCc-ceeeccccccccc---------------------cc-cCCccchhhHHHhhcccceeeccccCC--ChhhhHH
Q 025876          157 AEHLSL-CTQRLPSNYAAWL---------------------DW-TLSICYPKHLTIETRGAVAILMMPSVG--GITFFQE  211 (247)
Q Consensus       157 ~~~~~~-~~~~~l~~~~~~~---------------------~~-~~~g~~pl~~a~~~~~~~~~~~l~~~~--~~~~~~~  211 (247)
                      +..++. +++++|+..++..                     .. ...|.||||+|+..+....+..|++.+  +.++++.
T Consensus       250 ~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~t~L~~  329 (446)
T PHA02946        250 IKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDIICEDAMYY  329 (446)
T ss_pred             HHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCccccHHHH
Confidence            999884 7777776654321                     11 124679999999999988888777653  5667777


Q ss_pred             hhhhhhhhhhccccCCCCCCC--CCCCccccccccc
Q 025876          212 SFAERSLIVVTEEVDYPDGDN--SRRNLPISRWVRS  245 (247)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  245 (247)
                      +...+...++..++.....-+  ..+++++.-.++.
T Consensus       330 A~~~~~~~~v~~Ll~~ga~~n~~~~G~t~l~~a~~~  365 (446)
T PHA02946        330 AVLSEYETMVDYLLFNHFSVDSVVNGHTCMSECVRL  365 (446)
T ss_pred             HHHhCHHHHHHHHHHCCCCCCCccccccHHHHHHHc
Confidence            777776666655544332222  2455665555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.5e-30  Score=219.32  Aligned_cols=183  Identities=19%  Similarity=0.162  Sum_probs=158.0

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHh-------------------------------------------------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQ-------------------------------------------------   33 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~-------------------------------------------------   33 (247)
                      .++|.+|..|.||||+||..|+.+.+++|++                                                 
T Consensus        61 advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~  140 (477)
T PHA02878         61 HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKS  140 (477)
T ss_pred             CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhcc
Confidence            4678899999999999999877666555554                                                 


Q ss_pred             ---------------cCchhhhccccccC-CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHH
Q 025876           34 ---------------SDSLILRKTSLTSL-RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQI   97 (247)
Q Consensus        34 ---------------~~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~   97 (247)
                                     .|+++   +..+.. |.||||+|+..|+.+++++|++.|+++ +..|..|.||||.|+..|+.++
T Consensus       141 ~~~~~~~~iv~~Ll~~gadi---n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~i  216 (477)
T PHA02878        141 KDDIIEAEITKLLLSYGADI---NMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPI  216 (477)
T ss_pred             chhhHHHHHHHHHHHcCCCC---CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHH
Confidence                           33332   334555 999999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHHcCCccccccCCCCCcHHHHHHhc-CcHHHHHHHHHcCCCcccccc-CCCcHHHHHHhcCCcceeecccccccc-
Q 025876           98 VKELLLANKDACLVADQDGRIPLHLAAMR-GRVEVVQELISANFDSALVKF-HGDTVLHFKAEHLSLCTQRLPSNYAAW-  174 (247)
Q Consensus        98 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~-  174 (247)
                      +++|+..|+++ +..|..|+||||+|+.. ++.+++++|+++|++++..+. .|.||||+|  .++.+++++|++.++. 
T Consensus       217 v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi  293 (477)
T PHA02878        217 VHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI  293 (477)
T ss_pred             HHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC
Confidence            99999999999 78999999999999976 689999999999999999975 799999999  4678889988888764 


Q ss_pred             ccccCCccchhhHHHhhc
Q 025876          175 LDWTLSICYPKHLTIETR  192 (247)
Q Consensus       175 ~~~~~~g~~pl~~a~~~~  192 (247)
                      ...+..|.||+|.|+...
T Consensus       294 n~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        294 NSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             CCcCCCCCCHHHHHHHHc
Confidence            455668999999999643

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=193.25  Aligned_cols=175  Identities=15%  Similarity=0.098  Sum_probs=151.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC--CHHHHHHHHhcCCcchhccc-CCCCcH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG--HLDFTKALLNHKPELAKELD-SLKHSP   85 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~-~~g~t~   85 (247)
                      ...+.|||++|++.|+.+.++.|+...      +..|..|.||||+|+..+  +.+++++|++.|+++ +..+ ..|.||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~Tp   90 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSA   90 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCH
Confidence            346789999999999999999998642      345677999999999864  899999999999998 6665 589999


Q ss_pred             HHHHHhc---CCHHHHHHHHHcCCccccccCCCCCcHHHHHHh--cCcHHHHHHHHHcCCCccccccCCCcHHHH-HHhc
Q 025876           86 LHLAAAE---GHVQIVKELLLANKDACLVADQDGRIPLHLAAM--RGRVEVVQELISANFDSALVKFHGDTVLHF-KAEH  159 (247)
Q Consensus        86 l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~-A~~~  159 (247)
                      ||+|+..   ++.+++++|+++|+++ +..|..|.||||+|+.  .++.+++++|++.|++++.+|..|.||||. |+..
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence            9998764   4789999999999999 7899999999999876  468999999999999999999999999996 5677


Q ss_pred             CCcceeeccccccc-cccccCCccchhhHHHhh
Q 025876          160 LSLCTQRLPSNYAA-WLDWTLSICYPKHLTIET  191 (247)
Q Consensus       160 ~~~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~  191 (247)
                      ++.+++++|+..+. ....+..|.||+|+|...
T Consensus       170 ~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        170 SDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            88999999987776 445566899999999843

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=6e-30  Score=218.67  Aligned_cols=219  Identities=19%  Similarity=0.143  Sum_probs=168.5

Q ss_pred             CCccccCCCCchHHHHHHHcC-CHHHHHHHHhcCchhhhccccccCCCcHHHHHH--hcCCHHHHHHHHhcCCcchhccc
Q 025876            3 IGAREHDEDSTHKLYEASLRG-SVRSLNTLMQSDSLILRKTSLTSLRETPLHISA--LLGHLDFTKALLNHKPELAKELD   79 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g-~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~Ll~~~~~~~~~~~   79 (247)
                      .|+|.+|..|.||||+|+..| ..+++++|++.|+++   +..|..|.||||+|+  ..++.+++++|++.|+++ +..+
T Consensus        74 adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i---n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d  149 (471)
T PHA03095         74 ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV---NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALD  149 (471)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccC
Confidence            467888899999999999999 599999999999887   566777999999999  556889999999999998 7889


Q ss_pred             CCCCcHHHHHHhcC--CHHHHHHHHHcCCccccccCCCCCcHHHHHHhc--CcHHHHHHHHHcCCCccccccCCCcHHHH
Q 025876           80 SLKHSPLHLAAAEG--HVQIVKELLLANKDACLVADQDGRIPLHLAAMR--GRVEVVQELISANFDSALVKFHGDTVLHF  155 (247)
Q Consensus        80 ~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~  155 (247)
                      ..|.||||+|+..+  ..+++++|++.|+++ ...+..|+||||+++..  +..++++.|++.|++++.+|..|.||||+
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~  228 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHS  228 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            99999999988876  578999999998888 44588888898888764  56788888888888888888888888888


Q ss_pred             HHhcCCc--ceeecccccc-ccccccCCccchhhHHHhhcccceeeccc---------cCCChhhhHHhhhhhhhhhhcc
Q 025876          156 KAEHLSL--CTQRLPSNYA-AWLDWTLSICYPKHLTIETRGAVAILMMP---------SVGGITFFQESFAERSLIVVTE  223 (247)
Q Consensus       156 A~~~~~~--~~~~~l~~~~-~~~~~~~~g~~pl~~a~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~  223 (247)
                      |+..++.  .+++.++..+ +....+..|.||||+|+..+....+..|+         +..|.+++..+...+...++..
T Consensus       229 Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~  308 (471)
T PHA03095        229 MATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRA  308 (471)
T ss_pred             HHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHH
Confidence            8887764  3444444444 34455567888888888766655555443         4455566666665555555544


Q ss_pred             ccC
Q 025876          224 EVD  226 (247)
Q Consensus       224 ~~~  226 (247)
                      ++.
T Consensus       309 LL~  311 (471)
T PHA03095        309 ALA  311 (471)
T ss_pred             HHH
Confidence            433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=8.4e-30  Score=221.92  Aligned_cols=180  Identities=16%  Similarity=0.077  Sum_probs=156.5

Q ss_pred             CCcccc-CCCCchHHHHHHHc--CCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCC--HHHHHHHHhcCCcchhc
Q 025876            3 IGAREH-DEDSTHKLYEASLR--GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGH--LDFTKALLNHKPELAKE   77 (247)
Q Consensus         3 ~~~~~~-~~~~~~~L~~A~~~--g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~~~~Ll~~~~~~~~~   77 (247)
                      .|+|.+ |..|.||||+|+..  ++.+++++|++.|+++   +..|..|.||||+|+..|+  .+++++|++.|+++ +.
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV---N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~  242 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV---NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DM  242 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CC
Confidence            467777 88999999998754  6899999999999987   5667889999999999995  58999999999998 88


Q ss_pred             ccCCCCcHHHHH-------------------------------------HhcCCHHHHHHHHHcCCccccccCCCCCcHH
Q 025876           78 LDSLKHSPLHLA-------------------------------------AAEGHVQIVKELLLANKDACLVADQDGRIPL  120 (247)
Q Consensus        78 ~~~~g~t~l~~A-------------------------------------~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  120 (247)
                      ++..|.||||.|                                     +..|+.+++++|++.|+++ +..|..|+|||
T Consensus       243 kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPL  321 (764)
T PHA02716        243 KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCL  321 (764)
T ss_pred             CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHH
Confidence            999999999975                                     3457889999999999998 78899999999


Q ss_pred             HHHHh--cCcHHHHHHHHHcCCCccccccCCCcHHHHHHh--------------cCCcceeeccccccccc-cccCCccc
Q 025876          121 HLAAM--RGRVEVVQELISANFDSALVKFHGDTVLHFKAE--------------HLSLCTQRLPSNYAAWL-DWTLSICY  183 (247)
Q Consensus       121 ~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~--------------~~~~~~~~~l~~~~~~~-~~~~~g~~  183 (247)
                      |+|+.  .++.+++++|++.|++++.+|..|+||||+|+.              .++.+++++|++.|+.. ..+..|.|
T Consensus       322 H~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~T  401 (764)
T PHA02716        322 HQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYT  401 (764)
T ss_pred             HHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCC
Confidence            99864  467899999999999999999999999999865              36789999888877644 55668999


Q ss_pred             hhhH
Q 025876          184 PKHL  187 (247)
Q Consensus       184 pl~~  187 (247)
                      |||.
T Consensus       402 PLh~  405 (764)
T PHA02716        402 PLTS  405 (764)
T ss_pred             hHHH
Confidence            9994

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=8.1e-30  Score=222.00  Aligned_cols=163  Identities=18%  Similarity=0.095  Sum_probs=139.1

Q ss_pred             CCccccCCCCchHHHHHHHcCC--HHHHHHHHhcCchhhhccccccCCCcHHHHH-------------------------
Q 025876            3 IGAREHDEDSTHKLYEASLRGS--VRSLNTLMQSDSLILRKTSLTSLRETPLHIS-------------------------   55 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A-------------------------   55 (247)
                      .|++.+|..|.||||+|+..|+  .++++.|++.|+++   +.+|..|.||||+|                         
T Consensus       203 ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV---N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~  279 (764)
T PHA02716        203 VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM---DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK  279 (764)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc
Confidence            4788899999999999999995  59999999999987   56678899999975                         


Q ss_pred             ------------HhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHh--cCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 025876           56 ------------ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA--EGHVQIVKELLLANKDACLVADQDGRIPLH  121 (247)
Q Consensus        56 ------------~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  121 (247)
                                  +..|+.+++++|++.|+++ +.+|..|+||||+|+.  .++.+++++|++.|+++ +..|..|+||||
T Consensus       280 ~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH  357 (764)
T PHA02716        280 NIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLH  357 (764)
T ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHH
Confidence                        3457889999999999998 8889999999999765  46789999999999998 789999999999


Q ss_pred             HHHh--------------cCcHHHHHHHHHcCCCccccccCCCcHHHHH----HhcCCcceeecccc
Q 025876          122 LAAM--------------RGRVEVVQELISANFDSALVKFHGDTVLHFK----AEHLSLCTQRLPSN  170 (247)
Q Consensus       122 ~A~~--------------~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A----~~~~~~~~~~~l~~  170 (247)
                      +|+.              .++.+++++|+++|++++.++..|.||||.+    ...++.+++++|+.
T Consensus       358 ~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis  424 (764)
T PHA02716        358 TYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLIS  424 (764)
T ss_pred             HHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHh
Confidence            9875              3688999999999999999999999999942    22345566655443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=216.96  Aligned_cols=202  Identities=14%  Similarity=0.050  Sum_probs=168.4

Q ss_pred             CCccccCCCCchHHHHHHHc-----CCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC---CHHHHHHHHhcCCcc
Q 025876            3 IGAREHDEDSTHKLYEASLR-----GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG---HLDFTKALLNHKPEL   74 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~-----g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~~~~~   74 (247)
                      .|+|.+|..|.||||.|+..     +..+++++|++.|+++   +.+|..|.||||+|+..+   +.+++++|++.|+++
T Consensus        62 advn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi---N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv  138 (489)
T PHA02798         62 ANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI---NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT  138 (489)
T ss_pred             CCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC---CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc
Confidence            46788899999999999864     7799999999999987   566778999999999876   789999999999998


Q ss_pred             hhcccCCCCcHHHHHHhcCC---HHHHHHHHHcCCccccccCCCCCcHHHHHHhc----CcHHHHHHHHHcCCC------
Q 025876           75 AKELDSLKHSPLHLAAAEGH---VQIVKELLLANKDACLVADQDGRIPLHLAAMR----GRVEVVQELISANFD------  141 (247)
Q Consensus        75 ~~~~~~~g~t~l~~A~~~g~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~~~~------  141 (247)
                       +..|..|.||||+|+..++   .+++++|++.|+++....+..|.||||.++..    ++.+++++|+++|++      
T Consensus       139 -n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        139 -TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             -cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence             8899999999999999988   99999999999988433356789999988764    367888888877654      


Q ss_pred             ---------------------------------ccccccCCCcHHHHHHhcCCcceeeccccccc-cccccCCccchhhH
Q 025876          142 ---------------------------------SALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA-WLDWTLSICYPKHL  187 (247)
Q Consensus       142 ---------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~-~~~~~~~g~~pl~~  187 (247)
                                                       ++.+|..|.||||+|+..++.+++++|++.|+ ....+..|.||||.
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~  297 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFT  297 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHH
Confidence                                             44456779999999999999999998887776 44555689999999


Q ss_pred             HHhhcccceeeccccCCChhh
Q 025876          188 TIETRGAVAILMMPSVGGITF  208 (247)
Q Consensus       188 a~~~~~~~~~~~l~~~~~~~~  208 (247)
                      |++.+....+..+++.+....
T Consensus       298 A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        298 AFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHcCcHHHHHHHHccCCCHH
Confidence            998888777777766654443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.9e-31  Score=209.62  Aligned_cols=192  Identities=23%  Similarity=0.265  Sum_probs=171.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhc-Cchhhhc-----cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQS-DSLILRK-----TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~-~~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      +.+|.|||.+|+++|+.+++++|+++ ++++...     ....-.|-+||-.|+..||+++|+.|+.+|+++ |......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TN  117 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTN  117 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccC
Confidence            45688999999999999999999984 3332111     112234899999999999999999999999887 7666777


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .|||-.||.-|+++++++|+++++++ .+.|+.|.|+||+|+..|+.+++++|++.|+++|.++..|.|+||.++..|+.
T Consensus       118 StPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccH
Confidence            79999999999999999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccccccccccCCccchhhHHHhhcccceeecccc
Q 025876          163 CTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPS  202 (247)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~  202 (247)
                      +++++|+.+++....+..|.|||..|...+....+..|++
T Consensus       197 divq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  197 DIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999888777777663

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=5.3e-30  Score=216.51  Aligned_cols=197  Identities=21%  Similarity=0.218  Sum_probs=133.6

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHh-----cCCcchhc
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN-----HKPELAKE   77 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-----~~~~~~~~   77 (247)
                      +|+|..|+.+.||||.||..++.+..+.|++.++++   ...|.+|..|+|.|++.|..++.++.+.     ....+ +.
T Consensus       145 ~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~---~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~  220 (929)
T KOG0510|consen  145 ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP---CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NF  220 (929)
T ss_pred             CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC---CcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-cc
Confidence            688899999999999999999999889999988877   4445667777777777777777777776     33344 55


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHHcCCccc--------------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcc
Q 025876           78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDAC--------------LVADQDGRIPLHLAAMRGRVEVVQELISANFDSA  143 (247)
Q Consensus        78 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~--------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  143 (247)
                      .+..|.||||.|+..|+.++++.+++.+....              +..|+.|+||||+|++.|+.++++.|+..|++++
T Consensus       221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~  300 (929)
T KOG0510|consen  221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN  300 (929)
T ss_pred             ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc
Confidence            56666677777777777777776666554331              1345666777777777777777777777777777


Q ss_pred             ccccCCCcHHHHHHhcCCcceeecccc-ccc--cccccCCccchhhHHHhhcccceeeccccC
Q 025876          144 LVKFHGDTVLHFKAEHLSLCTQRLPSN-YAA--WLDWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       144 ~~~~~g~t~l~~A~~~~~~~~~~~l~~-~~~--~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      .++.++.||||.|+..|++..++-|++ .+.  .+..|..|.||+|.|+..++......|+++
T Consensus       301 ~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~  363 (929)
T KOG0510|consen  301 SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK  363 (929)
T ss_pred             ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc
Confidence            776666777777777777666665544 221  333444566777776655555555544433

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=221.15  Aligned_cols=222  Identities=18%  Similarity=0.205  Sum_probs=143.6

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhh------------------------------------------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILR------------------------------------------   40 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~------------------------------------------   40 (247)
                      .|+|.+|..|.||||+|+..|+.+++++|++.|+++..                                          
T Consensus       169 advn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai  248 (682)
T PHA02876        169 ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAI  248 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence            46788899999999999999999999999998876521                                          


Q ss_pred             -----------------ccccccCCCcHHHHHHhcCCH-HHHHHHHhcCCcchhcccCCCCcHHHHHHhcC-CHHHHHHH
Q 025876           41 -----------------KTSLTSLRETPLHISALLGHL-DFTKALLNHKPELAKELDSLKHSPLHLAAAEG-HVQIVKEL  101 (247)
Q Consensus        41 -----------------~~~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g-~~~~~~~L  101 (247)
                                       .+..|..|.||||+|+..|+. +++++|++.|+++ +..|..|.||||+|+..| ..+++++|
T Consensus       249 ~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~L  327 (682)
T PHA02876        249 RNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTL  327 (682)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHH
Confidence                             111233466666666666654 4566666666665 556666666666666666 36666666


Q ss_pred             HHcCCccccccCCCCCcHHHHHHhc-CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccC
Q 025876          102 LLANKDACLVADQDGRIPLHLAAMR-GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTL  179 (247)
Q Consensus       102 l~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~  179 (247)
                      +..|+++ +..+..|+||||+|+.. +..+++++|++.|++++..|..|.||||+|+..++.+++++|++.++.. ..+.
T Consensus       328 l~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~  406 (682)
T PHA02876        328 IMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ  406 (682)
T ss_pred             HHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCC
Confidence            6666666 55666666666666654 3566777777777777777777777777777777777777776655533 3344


Q ss_pred             CccchhhHHHhhcccce-ee---------ccccCCChhhhHHhhhhh-hhhhhccccC
Q 025876          180 SICYPKHLTIETRGAVA-IL---------MMPSVGGITFFQESFAER-SLIVVTEEVD  226 (247)
Q Consensus       180 ~g~~pl~~a~~~~~~~~-~~---------~l~~~~~~~~~~~~~~~~-~~~~~~~~~~  226 (247)
                      .|.||+|+|+....... +.         ...+..|.++++.+...+ ...++..++.
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence            56777777765433221 11         234556666676666543 3444444433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-29  Score=212.86  Aligned_cols=206  Identities=23%  Similarity=0.243  Sum_probs=172.8

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCch--hhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch-----
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSL--ILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA-----   75 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~--~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~-----   75 (247)
                      .|+...|.+|..|+|.|++.|..++.+..++..+.  ....+..+..+.+|||.|+..|+.++++.+|+.+..+.     
T Consensus       178 a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~  257 (929)
T KOG0510|consen  178 ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLD  257 (929)
T ss_pred             CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhH
Confidence            46677888899999999999999999999983221  11224456669999999999999999999999876432     


Q ss_pred             ---------hcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH-cC-CCccc
Q 025876           76 ---------KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS-AN-FDSAL  144 (247)
Q Consensus        76 ---------~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~-~~~~~  144 (247)
                               +..|.+|.||||+|++.|+.++++.|+..|+++ +.++.++.||||.|+.+|++.+|+.|++ .+ ...+.
T Consensus       258 ~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne  336 (929)
T KOG0510|consen  258 AMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNE  336 (929)
T ss_pred             HHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccc
Confidence                     345889999999999999999999999999999 7889999999999999999999999998 43 45566


Q ss_pred             cccCCCcHHHHHHhcCCcceeecccccccccc----ccCCccchhhHHHhhcccceeeccccCCChhhh
Q 025876          145 VKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD----WTLSICYPKHLTIETRGAVAILMMPSVGGITFF  209 (247)
Q Consensus       145 ~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~----~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~  209 (247)
                      .|..|.||||.|++.|+..++++|++.|+...    .|..|.||||.|+..+...++..|++++.....
T Consensus       337 ~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  337 SDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             ccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            68899999999999999999999998887554    377899999999999999998888888766544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=219.06  Aligned_cols=196  Identities=21%  Similarity=0.226  Sum_probs=154.3

Q ss_pred             CCccccCCCCchHHHHHHHcCCH-HHHHHHHhcCchhhhccccccCCCcHHHHHHhcC-CHHHHHHHHhcCCcchhcccC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSV-RSLNTLMQSDSLILRKTSLTSLRETPLHISALLG-HLDFTKALLNHKPELAKELDS   80 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~-~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~Ll~~~~~~~~~~~~   80 (247)
                      .+++..|..|.||||+|+..|+. ++++.|++.|+++   +..|..|.||||+|+..| ..+++++|+..|+++ +..|.
T Consensus       264 ~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi---n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~  339 (682)
T PHA02876        264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV---NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADR  339 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCccc
Confidence            35677788889999999998886 5788888888876   455677899999999888 588889999888887 77888


Q ss_pred             CCCcHHHHHHhcC-CHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhc
Q 025876           81 LKHSPLHLAAAEG-HVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH  159 (247)
Q Consensus        81 ~g~t~l~~A~~~g-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~  159 (247)
                      .|.||||+|+..+ ..+++++|+..|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus       340 ~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~  418 (682)
T PHA02876        340 LYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG  418 (682)
T ss_pred             CCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHc
Confidence            8889999888864 678888888888888 67888888999999888888999999888888888888888888888766


Q ss_pred             CC-cceeeccccccc-cccccCCccchhhHHHhhcc-cceeeccccC
Q 025876          160 LS-LCTQRLPSNYAA-WLDWTLSICYPKHLTIETRG-AVAILMMPSV  203 (247)
Q Consensus       160 ~~-~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~~~-~~~~~~l~~~  203 (247)
                      ++ ..++++|++.+. ....+..|+||||+|+..+. ...+..|++.
T Consensus       419 ~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~  465 (682)
T PHA02876        419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN  465 (682)
T ss_pred             CCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence            55 355676666655 44556678888888887553 3444444443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.3e-28  Score=206.87  Aligned_cols=130  Identities=16%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC------CHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc---CC
Q 025876           24 SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG------HLDFTKALLNHKPELAKELDSLKHSPLHLAAAE---GH   94 (247)
Q Consensus        24 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~---g~   94 (247)
                      +.++++.|++.|++++.   .+ .+.||||.|+..+      +.+++++|++.|+++ +..+..|.||||.|+..   |+
T Consensus        49 ~~~iv~~Ll~~GAdvn~---~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~  123 (494)
T PHA02989         49 KIKIVKLLIDNGADVNY---KG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINN  123 (494)
T ss_pred             ChHHHHHHHHcCCCccC---CC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCc
Confidence            44555555555554421   11 2345555444332      234455555555554 44445555555544332   34


Q ss_pred             HHHHHHHHHcCCccccccCCCCCcHHHHHHhc--CcHHHHHHHHHcCCCccc-cccCCCcHHHHHHh
Q 025876           95 VQIVKELLLANKDACLVADQDGRIPLHLAAMR--GRVEVVQELISANFDSAL-VKFHGDTVLHFKAE  158 (247)
Q Consensus        95 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~-~~~~g~t~l~~A~~  158 (247)
                      .+++++|+++|+++.+..+..|+||||+|+..  ++.+++++|+++|++++. .+..|.||||+|+.
T Consensus       124 ~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        124 CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh
Confidence            45555555555444223444455555544332  344555555555555444 24444555554443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.7e-27  Score=204.27  Aligned_cols=196  Identities=10%  Similarity=-0.006  Sum_probs=108.8

Q ss_pred             CccccCCCCchHHHHHHHc---CCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhc--CCHHHHHHHHhcCCcchhcc
Q 025876            4 GAREHDEDSTHKLYEASLR---GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALL--GHLDFTKALLNHKPELAKEL   78 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~~~~Ll~~~~~~~~~~   78 (247)
                      |+|.+|..|.||||.|+..   |+.+++++|++.|+++.  +..|..|.||||+|+..  ++.+++++|++.|+++....
T Consensus       100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin--~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~  177 (494)
T PHA02989        100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN--DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKT  177 (494)
T ss_pred             CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc--cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc
Confidence            3444455555555544433   34455555555554431  11233355555554432  34455555555555441113


Q ss_pred             cCCCCcHHHHHHhcC----CHHHHHHHHHcCCccccccCCCCCcHHHHHHhc------CcHHHHHHHHHcCCCccccccC
Q 025876           79 DSLKHSPLHLAAAEG----HVQIVKELLLANKDACLVADQDGRIPLHLAAMR------GRVEVVQELISANFDSALVKFH  148 (247)
Q Consensus        79 ~~~g~t~l~~A~~~g----~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~------~~~~~v~~Ll~~~~~~~~~~~~  148 (247)
                      +..|.||||+|+..+    +.+++++|++.|+++ +..+..+.|+||.+...      +..+++++|+. +++++.+|..
T Consensus       178 ~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~  255 (494)
T PHA02989        178 SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKK  255 (494)
T ss_pred             cccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCC
Confidence            444555555544332    445555555555544 34444445555443322      12344444333 4555666777


Q ss_pred             CCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC
Q 025876          149 GDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       149 g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      |+||||+|+..++.+++++|++.|+. ...+..|.||||+|+..+....+..+++.
T Consensus       256 G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        256 GFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             CCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999988877664 44555799999999988877776665544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1e-26  Score=177.36  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=134.4

Q ss_pred             ccccCCCCchHHHHHHHc--CCHHHHHHHHhcCchhhhccccc-cCCCcHHHHHHhc---CCHHHHHHHHhcCCcchhcc
Q 025876            5 AREHDEDSTHKLYEASLR--GSVRSLNTLMQSDSLILRKTSLT-SLRETPLHISALL---GHLDFTKALLNHKPELAKEL   78 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~--g~~~~~~~Ll~~~~~~~~~~~~~-~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~   78 (247)
                      .+..|..|.||||+|+..  |+.+++++|++.|+++   +..+ ..|.||||+|+..   ++.+++++|++.|+++ +..
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv---n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~  119 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV---NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEE  119 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC---CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCc
Confidence            567889999999999985  4899999999999988   3443 4699999998864   4799999999999998 889


Q ss_pred             cCCCCcHHHHHHh--cCCHHHHHHHHHcCCccccccCCCCCcHHHH-HHhcCcHHHHHHHHHcCCCccccccCCCcHHHH
Q 025876           79 DSLKHSPLHLAAA--EGHVQIVKELLLANKDACLVADQDGRIPLHL-AAMRGRVEVVQELISANFDSALVKFHGDTVLHF  155 (247)
Q Consensus        79 ~~~g~t~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~  155 (247)
                      |..|.||||+|+.  .++.+++++|+..|+++ +..|..|.||||. |+..++.+++++|++.|++++.+|..|.|||++
T Consensus       120 d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~l  198 (209)
T PHA02859        120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDL  198 (209)
T ss_pred             CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            9999999999876  46899999999999998 6889999999995 567889999999999999999999999999999


Q ss_pred             HHhcC
Q 025876          156 KAEHL  160 (247)
Q Consensus       156 A~~~~  160 (247)
                      |...+
T Consensus       199 a~~~~  203 (209)
T PHA02859        199 IKFRN  203 (209)
T ss_pred             Hhhhh
Confidence            98754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.3e-27  Score=204.94  Aligned_cols=132  Identities=15%  Similarity=0.066  Sum_probs=76.2

Q ss_pred             ccccCCCCchHHHHHHHc---CCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHH----HHHHHHhcCCcchhc
Q 025876            5 AREHDEDSTHKLYEASLR---GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLD----FTKALLNHKPELAKE   77 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~----~~~~Ll~~~~~~~~~   77 (247)
                      .+.+|.+|.||||+|+..   |+.+++++|++.|+++   ...+..|.||||+|+..|+.+    +++.|++.+... +.
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v---~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~  100 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP---LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NI  100 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc---cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CC
Confidence            355688999999997555   8899999999999987   456777999999988877632    334444332211 11


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH--HhcCcHHHHHHHHHcCCCcc
Q 025876           78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA--AMRGRVEVVQELISANFDSA  143 (247)
Q Consensus        78 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~~~~  143 (247)
                      .+  ..+++++|+..|+.+++++|+++|+++ +..+..|+||||.+  +..|+.+++++|+++|++++
T Consensus       101 ~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917        101 ND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             CC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            11  113334444444444444444444444 34444444444422  12344444444444444444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=7.9e-27  Score=191.47  Aligned_cols=163  Identities=13%  Similarity=0.065  Sum_probs=145.9

Q ss_pred             ccCCCCchHHHHHHH--cCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcc-----c
Q 025876            7 EHDEDSTHKLYEASL--RGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKEL-----D   79 (247)
Q Consensus         7 ~~~~~~~~~L~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~-----~   79 (247)
                      .++.+++|+||+|+.  .|+.+++++|+++|+++.   ..+  +.||+|.|+..|+.+++++|+++|+...+..     +
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn---~~~--~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~  185 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY---KIE--CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYK  185 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC---CCC--CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhh
Confidence            577789999999999  899999999999999883   333  6899999999999999999999998543333     2


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhc
Q 025876           80 SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH  159 (247)
Q Consensus        80 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~  159 (247)
                      ..+.|++|.|...++.+++++|+.+|+++ +..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus       186 ~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        186 IIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             hhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            34789999999999999999999999999 78999999999999999999999999999999999999999999999999


Q ss_pred             CC--------cceeeccccccccc
Q 025876          160 LS--------LCTQRLPSNYAAWL  175 (247)
Q Consensus       160 ~~--------~~~~~~l~~~~~~~  175 (247)
                      |+        .+++++|+..++..
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCC
Confidence            85        48999888877644

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=1.6e-26  Score=208.30  Aligned_cols=176  Identities=22%  Similarity=0.171  Sum_probs=157.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                      .+..+.++|+.||..|+.++++.|++.|.++   +..|..|+||||+|+..|+.+++++|++.|+++ +..|..|.||||
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~---n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~  596 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP---DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALW  596 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHH
Confidence            3445678999999999999999999999887   567888999999999999999999999999998 889999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876           88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL  167 (247)
Q Consensus        88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  167 (247)
                      .|+..|+.+++++|+..++..   ....+.++||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            999999999999999877654   34567799999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccc-cCCc-cchhhHHHh
Q 025876          168 PSNYAAWLDW-TLSI-CYPKHLTIE  190 (247)
Q Consensus       168 l~~~~~~~~~-~~~g-~~pl~~a~~  190 (247)
                      |++.++.... +..| .+|.+.+..
T Consensus       674 Ll~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        674 LIMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            9888875544 4455 889888764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.6e-26  Score=197.99  Aligned_cols=167  Identities=18%  Similarity=0.117  Sum_probs=147.5

Q ss_pred             CCccccCCCCchHHHHHHHcC---CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCC---HHHHHHHHhcCCcchh
Q 025876            3 IGAREHDEDSTHKLYEASLRG---SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGH---LDFTKALLNHKPELAK   76 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g---~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~~~~~~~   76 (247)
                      .|+|.+|..|.||||+|+..|   +.+++++|++.|+++   +..|..|.||||+|+..|+   .+++++|++.|+++ +
T Consensus       100 adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n  175 (489)
T PHA02798        100 ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT---TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-N  175 (489)
T ss_pred             CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-c
Confidence            578899999999999999986   789999999999987   5667889999999999998   99999999999998 5


Q ss_pred             cc-cCCCCcHHHHHHhc----CCHHHHHHHHHcCCccc--------------------------------------cccC
Q 025876           77 EL-DSLKHSPLHLAAAE----GHVQIVKELLLANKDAC--------------------------------------LVAD  113 (247)
Q Consensus        77 ~~-~~~g~t~l~~A~~~----g~~~~~~~Ll~~~~~~~--------------------------------------~~~~  113 (247)
                      .. +..|.||+|.++..    ++.+++++|+++|+++.                                      +..|
T Consensus       176 ~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d  255 (489)
T PHA02798        176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD  255 (489)
T ss_pred             cccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence            44 56789999998765    47899999998876431                                      3356


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876          114 QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       114 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                      ..|+||||+|+..|+.+++++|++.|++++..+..|.|||+.|+..++.++++.|++.+.
T Consensus       256 ~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~  315 (489)
T PHA02798        256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKP  315 (489)
T ss_pred             cCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCC
Confidence            789999999999999999999999999999999999999999999999999998877654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=8.1e-27  Score=191.39  Aligned_cols=194  Identities=8%  Similarity=-0.111  Sum_probs=160.5

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhcc---ccccCCCcHHHHHHh--cCCHHHHHHHHhcCCcchhcc
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKT---SLTSLRETPLHISAL--LGHLDFTKALLNHKPELAKEL   78 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~---~~~~~g~t~L~~A~~--~g~~~~~~~Ll~~~~~~~~~~   78 (247)
                      ++|.++.+|     +|+..+..++++.|++++.+++...   .++..++|+||.++.  .|+.+++++|+++|+++ +. 
T Consensus        74 ~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~-  146 (437)
T PHA02795         74 NIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK-  146 (437)
T ss_pred             chhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC-
Confidence            455555555     8999999999999999999863110   356669999999999  89999999999999998 54 


Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHHHcCCcccccc-----CCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHH
Q 025876           79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVA-----DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVL  153 (247)
Q Consensus        79 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~-----~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l  153 (247)
                       ..+.||+|.|+..++.+++++|+.+|++..+..     +..+.|++|.|...++.+++++|+.+|++++.+|..|.|||
T Consensus       147 -~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpL  225 (437)
T PHA02795        147 -IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLL  225 (437)
T ss_pred             -CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHH
Confidence             345899999999999999999999998543322     13477899999999999999999999999999999999999


Q ss_pred             HHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcc--------cceeeccccCCC
Q 025876          154 HFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRG--------AVAILMMPSVGG  205 (247)
Q Consensus       154 ~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~--------~~~~~~l~~~~~  205 (247)
                      |+|+..|+.+++++|+..|+.. ..+..|+||||.|+..+.        ...+..|++.+.
T Consensus       226 h~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        226 YRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            9999999999999998887744 555589999999998774        245555555443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.6e-26  Score=183.08  Aligned_cols=155  Identities=25%  Similarity=0.297  Sum_probs=142.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA   89 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A   89 (247)
                      -.|.+||+.|+--||.++|+.|+.++++++   ..+....|||-.||.-|+++++++|+++|+++ +..+..|.|.||+|
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN---~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa  157 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVN---DTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIA  157 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCccc---cccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEee
Confidence            468899999999999999999999998773   33344779999999999999999999999998 89999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccc
Q 025876           90 AAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPS  169 (247)
Q Consensus        90 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  169 (247)
                      |..|+.+++++|++.|+++ +..+..|+|+||.|+..|+++++++|+.+|+.+.. |..|.|||..|+..|..++++.|+
T Consensus       158 ~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  158 CYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             eccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999999999999999 79999999999999999999999999999887654 567999999999999999999887


Q ss_pred             c
Q 025876          170 N  170 (247)
Q Consensus       170 ~  170 (247)
                      .
T Consensus       236 ~  236 (615)
T KOG0508|consen  236 Q  236 (615)
T ss_pred             c
Confidence            5

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=6e-26  Score=201.97  Aligned_cols=198  Identities=23%  Similarity=0.221  Sum_probs=156.3

Q ss_pred             CccccCCCCchHHHHHHHcC-CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            4 GAREHDEDSTHKLYEASLRG-SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g-~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      +.+.++..|.|++|+|+..| ..+....+++.+..+   +.....|.||||.|+..|+.+.++.|++.++.. +.....+
T Consensus       432 ~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~---n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~  507 (1143)
T KOG4177|consen  432 SPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP---NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKG  507 (1143)
T ss_pred             ChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc---chhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhc
Confidence            45677777888888888888 677777777777766   444455888888888888888888888877655 5666777


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .+++|.|...+...+++.++.+|+.+ +..+..|.||||.|+.+|+..+|++|+++|++++.+++.|+||||.|+..|+.
T Consensus       508 l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~  586 (1143)
T KOG4177|consen  508 LTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHN  586 (1143)
T ss_pred             cchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChH
Confidence            78888888888888888888888887 67788888999999999999999999999999999998899999999999988


Q ss_pred             ceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCCCh
Q 025876          163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVGGI  206 (247)
Q Consensus       163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  206 (247)
                      +++++|.++++.. ..+..|.|||++|+..+.......++..+..
T Consensus       587 ~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  587 DIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            9999888877744 4455789999999887777766666555444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=159.01  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=123.0

Q ss_pred             CCccccCCCCchHHHHHHHcCCH----HHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHH---HHHHHhcCCcch
Q 025876            3 IGAREHDEDSTHKLYEASLRGSV----RSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDF---TKALLNHKPELA   75 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---~~~Ll~~~~~~~   75 (247)
                      +|++..+..+.++||.||+.|+.    +++++|++.+..+   +..|..|+||||+|+..|+.+.   +++|+..|+++ 
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~---~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-   86 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL---HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-   86 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh---hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-
Confidence            45667788899999999999998    5555667777655   4567779999999999988654   89999999988 


Q ss_pred             hccc-CCCCcHHHHHHhcCCHHHHHHHHH-cCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCC
Q 025876           76 KELD-SLKHSPLHLAAAEGHVQIVKELLL-ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGD  150 (247)
Q Consensus        76 ~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~  150 (247)
                      +..+ ..|.||||+|+..|+.+++++|+. .++++ +..+..|+||||+|+..++.+++++|+++|++++.++..|.
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            7777 589999999999999999999995 78887 68899999999999999999999999999999999877765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=2.3e-25  Score=162.24  Aligned_cols=199  Identities=23%  Similarity=0.245  Sum_probs=164.3

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSP   85 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   85 (247)
                      ...+..|..+++.|+-+|+.+.+..++.++...   +..+.-+.+|+.+++..-+.+.+..+.+..   .|..|..|.||
T Consensus        90 ~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg---nevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTp  163 (296)
T KOG0502|consen   90 DETDPEGWSALLVAAPCGSVDKVSTTLTNGARG---NEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTP  163 (296)
T ss_pred             CCCCchhhhhhhhcCCCCCcceeeeeecccccC---CccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchH
Confidence            344556899999999999999999999988876   344555899999999988888877776654   36789999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCccee
Q 025876           86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQ  165 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  165 (247)
                      |.+|+..|++++|++|++.|+++ .......+++|++|+..|+.++|++|+.+++++|..|.+|-|||-+|++.++.+|+
T Consensus       164 LiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcv  242 (296)
T KOG0502|consen  164 LIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCV  242 (296)
T ss_pred             hHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHH
Confidence            99999999999999999999998 67778888999999999999999999999999999999999999999999999999


Q ss_pred             eccccccc-cccccCCccchhhHHHhhcccceeeccccCCChhhhHHh
Q 025876          166 RLPSNYAA-WLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQES  212 (247)
Q Consensus       166 ~~l~~~~~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~~~~  212 (247)
                      +.|++.|+ ....+..|.+++..|+..+.. ++..++.+.....+|..
T Consensus       243 e~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~  289 (296)
T KOG0502|consen  243 ESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDS  289 (296)
T ss_pred             HHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcc
Confidence            98877776 445666899999999977665 55555555555555543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=186.48  Aligned_cols=195  Identities=11%  Similarity=0.046  Sum_probs=153.9

Q ss_pred             Ccc-ccCCCCchHHHHHHHcC---CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC--CHHHHHHHHhcCCcch-h
Q 025876            4 GAR-EHDEDSTHKLYEASLRG---SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG--HLDFTKALLNHKPELA-K   76 (247)
Q Consensus         4 ~~~-~~~~~~~~~L~~A~~~g---~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~-~   76 (247)
                      ++| .+|..|.||||+|+..|   +.+++++|+++|+++   +.+|..|.||||+|+..+  +.+++++|++.|+... +
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi---n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~  108 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER---LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNE  108 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC---cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcc
Confidence            455 88899999999999997   599999999999988   677888999999999977  7999999999975331 3


Q ss_pred             cccCCCCcHHHHHHh--cCCHHHHHHHHH-cCCcccccc-C----CCCCcHHHHHHhcCcHHHHHHHHHcCCCcc-----
Q 025876           77 ELDSLKHSPLHLAAA--EGHVQIVKELLL-ANKDACLVA-D----QDGRIPLHLAAMRGRVEVVQELISANFDSA-----  143 (247)
Q Consensus        77 ~~~~~g~t~l~~A~~--~g~~~~~~~Ll~-~~~~~~~~~-~----~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-----  143 (247)
                      ..+..+.+|++.++.  .++.+++++|+. .+.++ +.. +    ..|-+|++++...++.++|++|++.|++++     
T Consensus       109 ~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~  187 (672)
T PHA02730        109 LTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRP-SKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR  187 (672)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHhcCCCh-hhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc
Confidence            456667889998888  789999999997 44555 332 2    378999999999999999999999999995     


Q ss_pred             --ccccCCCcH-HHHH------HhcCCcceeecccccccc-ccccCCccchhhHHHhh--cccceeecccc
Q 025876          144 --LVKFHGDTV-LHFK------AEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIET--RGAVAILMMPS  202 (247)
Q Consensus       144 --~~~~~g~t~-l~~A------~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~--~~~~~~~~l~~  202 (247)
                        ..+....+| ||+.      ...++.+++++|+.+|+. ...+..|.||||++...  ...+.+..|++
T Consensus       188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence              234445544 4433      456678999999988886 45777999999974433  22566666666

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=3.9e-26  Score=166.26  Aligned_cols=174  Identities=22%  Similarity=0.194  Sum_probs=150.8

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSP   85 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   85 (247)
                      |+.+.-+.+|+.+++.+.+.+.+-.+.+...     +..|+.|.|||.||+..|+++++++|++.|+++ ....++..++
T Consensus       123 nevs~~p~s~~slsVhql~L~~~~~~~~n~V-----N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resA  196 (296)
T KOG0502|consen  123 NEVSLMPWSPLSLSVHQLHLDVVDLLVNNKV-----NACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESA  196 (296)
T ss_pred             CccccccCChhhHHHHHHHHHHHHHHhhccc-----cCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhh
Confidence            4555667899999999998888877766443     456788999999999999999999999999998 7788999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCccee
Q 025876           86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQ  165 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  165 (247)
                      |++|++.|..++|++|+..+.++ +..|.+|-|||-+|++.++.+||+.|+..|++++..+..|.+++..|+..|+..+-
T Consensus       197 LsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~Vq  275 (296)
T KOG0502|consen  197 LSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYRIVQ  275 (296)
T ss_pred             HhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhHHHH
Confidence            99999999999999999999999 89999999999999999999999999999999999999999999999999988444


Q ss_pred             eccccccccccccCCccchhh
Q 025876          166 RLPSNYAAWLDWTLSICYPKH  186 (247)
Q Consensus       166 ~~l~~~~~~~~~~~~g~~pl~  186 (247)
                      +.+.++....-.+....+|+|
T Consensus       276 qvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  276 QVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHHHHhhcccCCCCCC
Confidence            444455555555555566654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.4e-24  Score=183.25  Aligned_cols=205  Identities=14%  Similarity=0.100  Sum_probs=159.8

Q ss_pred             CCccccCCCCchHHHH--HHHcCCHHHHHHHHh--------------------------------cCchhhh--------
Q 025876            3 IGAREHDEDSTHKLYE--ASLRGSVRSLNTLMQ--------------------------------SDSLILR--------   40 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~--A~~~g~~~~~~~Ll~--------------------------------~~~~~~~--------   40 (247)
                      .|+|.+|..|.||||+  |...|+.++++.|++                                .+.+...        
T Consensus       226 adIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  305 (672)
T PHA02730        226 VSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGR  305 (672)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhcc
Confidence            5789999999999984  666688999999999                                4444311        


Q ss_pred             ---------ccccccCCCc---------------------HHHHHHhcC---CHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876           41 ---------KTSLTSLRET---------------------PLHISALLG---HLDFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus        41 ---------~~~~~~~g~t---------------------~L~~A~~~g---~~~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                               ....++.|.+                     .||.-...+   +.+++++|+++|+++ +.. ..|.||||
T Consensus       306 ~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~k-~~G~TpLH  383 (672)
T PHA02730        306 HTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DKT-TDNNYPLH  383 (672)
T ss_pred             CcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-CcC-CCCCcHHH
Confidence                     0014455654                     677777755   689999999999998 554 78999999


Q ss_pred             HHHhcCC----HHHHHHHHHcCCc-cccccCCCCCcHHHH---HHhcC---------cHHHHHHHHHcCCCccccccCCC
Q 025876           88 LAAAEGH----VQIVKELLLANKD-ACLVADQDGRIPLHL---AAMRG---------RVEVVQELISANFDSALVKFHGD  150 (247)
Q Consensus        88 ~A~~~g~----~~~~~~Ll~~~~~-~~~~~~~~g~t~L~~---A~~~~---------~~~~v~~Ll~~~~~~~~~~~~g~  150 (247)
                      +|+..+.    .+++++|+++|++ ..+..+..|.||||.   |...+         ..+++++|+.+|++++.+|..|.
T Consensus       384 ~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~  463 (672)
T PHA02730        384 DYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENK  463 (672)
T ss_pred             HHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCC
Confidence            9988875    8999999999973 226788999999984   33222         23579999999999999999999


Q ss_pred             cHHHHHHhcCCcceeeccccccccccccC--CccchhhHHHhh--cccceeeccccCCChhhh
Q 025876          151 TVLHFKAEHLSLCTQRLPSNYAAWLDWTL--SICYPKHLTIET--RGAVAILMMPSVGGITFF  209 (247)
Q Consensus       151 t~l~~A~~~~~~~~~~~l~~~~~~~~~~~--~g~~pl~~a~~~--~~~~~~~~l~~~~~~~~~  209 (247)
                      ||||+|+..++.+++++|+..|+......  .|.||+|.|+..  .....+..|++.+.....
T Consensus       464 TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~~  526 (672)
T PHA02730        464 TLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLET  526 (672)
T ss_pred             CHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHHH
Confidence            99999999999999999998888665444  489999999864  345556666666554443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-24  Score=169.35  Aligned_cols=160  Identities=23%  Similarity=0.266  Sum_probs=93.8

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhc-----CCHHHHHHHHhcCCcchhcccC
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALL-----GHLDFTKALLNHKPELAKELDS   80 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~~~~Ll~~~~~~~~~~~~   80 (247)
                      |..|.+|.|+||+|+..+++++|+.|++.|.  +..+.++..|.||.++|+..     .+..+|..|...|- +...-..
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgv--C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ  338 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGV--CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQ  338 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCc--ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhh
Confidence            4556666666666666666666666666554  22234445566666666543     24455666655552 2123345


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCCCcHHHHHHhc
Q 025876           81 LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFKAEH  159 (247)
Q Consensus        81 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~  159 (247)
                      .|+|+||+|++.|+.++++.|+..|+++ +..|..|.|+|+.|+.+||.+++++|+. .+++....|.+|.|+|.+|...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            5666666666666666666666666666 5666666666666666666666666665 3556666666666666666666


Q ss_pred             CCcceeeccc
Q 025876          160 LSLCTQRLPS  169 (247)
Q Consensus       160 ~~~~~~~~l~  169 (247)
                      |+-++.-+|-
T Consensus       418 gh~eIa~mlY  427 (452)
T KOG0514|consen  418 GHREIAVMLY  427 (452)
T ss_pred             CchHHHHHHH
Confidence            6666655553

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=3.9e-24  Score=190.53  Aligned_cols=186  Identities=23%  Similarity=0.229  Sum_probs=166.2

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .++|..-..|.|+||.|+..|+.++++.|++.++..   +.....+.+++|.|...+...+++.++++|... +.++..|
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~---~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~  540 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND---NLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRG  540 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCcc---CccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccc
Confidence            467888889999999999999999999999988654   333455999999999999999999999999998 8889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      +||||+|+.+|++.+|++|+++|+++ +..++.|+||||.|+.+|+.+|+++|+++|+++|..+..|.|||++|+..|.+
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~  619 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYL  619 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhccc
Confidence            99999999999999999999999999 68889999999999999999999999999999999999999999999999999


Q ss_pred             ceeecccccccc------ccccCCccchhhHHHhhcc
Q 025876          163 CTQRLPSNYAAW------LDWTLSICYPKHLTIETRG  193 (247)
Q Consensus       163 ~~~~~l~~~~~~------~~~~~~g~~pl~~a~~~~~  193 (247)
                      +++++++..+..      ......|.+|...+-....
T Consensus       620 ~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~~  656 (1143)
T KOG4177|consen  620 SVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELDT  656 (1143)
T ss_pred             chhhHHHhccCccccccchhhhhcccChhhHHHHhhh
Confidence            999988766654      3333368888887765443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=7.6e-24  Score=185.21  Aligned_cols=195  Identities=14%  Similarity=0.093  Sum_probs=150.0

Q ss_pred             HHHHHHHHhcCchhhhccccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHH----H
Q 025876           25 VRSLNTLMQSDSLILRKTSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQ----I   97 (247)
Q Consensus        25 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~----~   97 (247)
                      .+.+++|+..+...   ...|..|+||||+|+..   |+.+++++|++.|+++ +..+..|.||||.|+..|+.+    +
T Consensus        12 ~~~~~~l~~~~~~~---~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         12 LDELKQMLRDRDPN---DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             HHHHHHHHhccCcc---cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHH
Confidence            56789999877765   45678899999998666   7899999999999998 788999999999999999854    5


Q ss_pred             HHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHH--HhcCCcceeeccccccccc
Q 025876           98 VKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFK--AEHLSLCTQRLPSNYAAWL  175 (247)
Q Consensus        98 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A--~~~~~~~~~~~l~~~~~~~  175 (247)
                      ++.|+..+... +..+  ..+++++|+..++.+++++|+++|++++.+|..|+||||.+  +..++.+++++|+..|+..
T Consensus        88 ~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917         88 AMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             HHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence            67888765433 2322  23678889999999999999999999999999999999964  4678999999999888765


Q ss_pred             cc-c---CCc-----------cchhhHHHhhc-----------ccceeeccc---------cCCChhhhHHhhhhhhh--
Q 025876          176 DW-T---LSI-----------CYPKHLTIETR-----------GAVAILMMP---------SVGGITFFQESFAERSL--  218 (247)
Q Consensus       176 ~~-~---~~g-----------~~pl~~a~~~~-----------~~~~~~~l~---------~~~~~~~~~~~~~~~~~--  218 (247)
                      .. +   ..|           .||||+|+..+           ....+..|+         ...|.++++.+...+..  
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~  244 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDI  244 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcH
Confidence            32 1   123           59999998632           233444433         46777888888877664  


Q ss_pred             hhhccccC
Q 025876          219 IVVTEEVD  226 (247)
Q Consensus       219 ~~~~~~~~  226 (247)
                      +++..+..
T Consensus       245 eivk~Li~  252 (661)
T PHA02917        245 DIVKLLMK  252 (661)
T ss_pred             HHHHHHHh
Confidence            45555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2.5e-23  Score=187.70  Aligned_cols=150  Identities=17%  Similarity=0.130  Sum_probs=136.9

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .|+|..|..|+||||+|+..|+.++++.|++.|+++   +..|.+|.||||+|+..|+.+++++|+..+... +  ...|
T Consensus       549 ~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi---n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~-~--~~~~  622 (823)
T PLN03192        549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV---HIRDANGNTALWNAISAKHHKIFRILYHFASIS-D--PHAA  622 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC---CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc-C--cccC
Confidence            478999999999999999999999999999999877   566788999999999999999999999877643 2  4557


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCC-CcHHHHHHhc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG-DTVLHFKAEH  159 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g-~t~l~~A~~~  159 (247)
                      .++||.|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..| .||+..+...
T Consensus       623 ~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        623 GDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            79999999999999999999999999 7899999999999999999999999999999999998888 9999887543

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=153.66  Aligned_cols=128  Identities=17%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhc------CchhhhccccccCCCcHHHHHHhcCC----HHHHHHHHhcCCcc
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQS------DSLILRKTSLTSLRETPLHISALLGH----LDFTKALLNHKPEL   74 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~------~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~~~~Ll~~~~~~   74 (247)
                      ++.+|..|.|+||+|++.|+.++++.|+..      ++.+   +..|..|.||||+|+..|+    .+++++|++.|+++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i---n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL---NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh---hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            344444555555555555555555544321      1211   3334445555555555554    24445555555444


Q ss_pred             hhcccC-CCCcHHHHHHhcCCHHHHHHHHH-cCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q 025876           75 AKELDS-LKHSPLHLAAAEGHVQIVKELLL-ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS  137 (247)
Q Consensus        75 ~~~~~~-~g~t~l~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  137 (247)
                       +.++. .|.||||+|+..++.+++++|+. .+.++ +..|..|+||||+|+..++.+++++|++
T Consensus        91 -n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         91 -NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             -CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence             33332 45555555555555555555554 24443 3444555555555555555555555544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=5.4e-24  Score=190.77  Aligned_cols=192  Identities=19%  Similarity=0.099  Sum_probs=127.3

Q ss_pred             CCccccCCCCchHHH-HHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC---CHHHHHHHHhcCCcc----
Q 025876            3 IGAREHDEDSTHKLY-EASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG---HLDFTKALLNHKPEL----   74 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~-~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~~~~~----   74 (247)
                      .++|..|..|+|||| .|+..++.++++.|++.+.       .+..|.||||.|+..+   ...+++.+...+...    
T Consensus        43 ~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~  115 (743)
T TIGR00870        43 LNINCPDRLGRSALFVAAIENENLELTELLLNLSC-------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLE  115 (743)
T ss_pred             cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchh
Confidence            466777778888888 7777777788888777665       2344788888877632   223344444333210    


Q ss_pred             -----hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC--------------CCCCcHHHHHHhcCcHHHHHHH
Q 025876           75 -----AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD--------------QDGRIPLHLAAMRGRVEVVQEL  135 (247)
Q Consensus        75 -----~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~L  135 (247)
                           .......|.||||+|+..|+.+++++|+++|+++. ..+              ..|+||||.|+..|+.+++++|
T Consensus       116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lL  194 (743)
T TIGR00870       116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL  194 (743)
T ss_pred             hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHH
Confidence                 01123457888888888888888888888887773 221              3577888888888888888888


Q ss_pred             HHcCCCccccccCCCcHHHHHHhcCC---------cceeecccccccc--------ccccCCccchhhHHHhhcccceee
Q 025876          136 ISANFDSALVKFHGDTVLHFKAEHLS---------LCTQRLPSNYAAW--------LDWTLSICYPKHLTIETRGAVAIL  198 (247)
Q Consensus       136 l~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~l~~~~~~--------~~~~~~g~~pl~~a~~~~~~~~~~  198 (247)
                      ++.|++++..|..|+||||+|+..+.         ..+.+++...++.        ...+..|.||+|.|+..+......
T Consensus       195 l~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~  274 (743)
T TIGR00870       195 SEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFR  274 (743)
T ss_pred             hcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHH
Confidence            88888888888888888888877751         2233444443332        234557888888888776666555


Q ss_pred             cccc
Q 025876          199 MMPS  202 (247)
Q Consensus       199 ~l~~  202 (247)
                      .++.
T Consensus       275 lLL~  278 (743)
T TIGR00870       275 LKLA  278 (743)
T ss_pred             HHHH
Confidence            5544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=2.6e-24  Score=167.36  Aligned_cols=158  Identities=22%  Similarity=0.200  Sum_probs=137.8

Q ss_pred             cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC-----CHHHHHHHHHcCCccccccCCCC
Q 025876           42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG-----HVQIVKELLLANKDACLVADQDG  116 (247)
Q Consensus        42 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g-----~~~~~~~Ll~~~~~~~~~~~~~g  116 (247)
                      +..|.+|+|+|||++.++++++|+.||+.|.+..+..+..|+||+|+++...     +.++|..|+..|-.. ......|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhhc
Confidence            4567889999999999999999999999998877999999999999987653     567888888887655 5678899


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccc--ccccccCCccchhhHHHhhccc
Q 025876          117 RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYA--AWLDWTLSICYPKHLTIETRGA  194 (247)
Q Consensus       117 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~--~~~~~~~~g~~pl~~a~~~~~~  194 (247)
                      +|+|++|+.+|..++|+.|+..|+++|.+|.+|.|+|+.|+.+|+.+++.+|+...  +..-.|..|.|+|.+|.+.++.
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            99999999999999999999999999999999999999999999999999887544  3445566899999999988876


Q ss_pred             ceeecc
Q 025876          195 VAILMM  200 (247)
Q Consensus       195 ~~~~~l  200 (247)
                      ++..++
T Consensus       421 eIa~ml  426 (452)
T KOG0514|consen  421 EIAVML  426 (452)
T ss_pred             HHHHHH
Confidence            665443

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=6.5e-23  Score=151.48  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=115.2

Q ss_pred             cccCCCcHHHHHHhcCCHHHHHHHHhc------CCcchhcccCCCCcHHHHHHhcCC----HHHHHHHHHcCCccccccC
Q 025876           44 LTSLRETPLHISALLGHLDFTKALLNH------KPELAKELDSLKHSPLHLAAAEGH----VQIVKELLLANKDACLVAD  113 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~------~~~~~~~~~~~g~t~l~~A~~~g~----~~~~~~Ll~~~~~~~~~~~  113 (247)
                      .|..|.||||+|+..|+.++++.|+..      ++.+ +..|..|.||||+|+..|+    .+++++|+..++++ +..+
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCC
Confidence            455699999999999999999998642      4555 7889999999999999998    58999999999998 6666


Q ss_pred             C-CCCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCCCcHHHHHHhcCCcceeecccccccc
Q 025876          114 Q-DGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW  174 (247)
Q Consensus       114 ~-~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  174 (247)
                      . .|+||||+|+..++.+++++|+. .+++++..|..|+||||.|+..++.+++++|.++.+.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4 89999999999999999999997 5999999999999999999999999999999887653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=6.4e-23  Score=149.45  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=103.0

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcC--chhhhccccccCCCcHHHHHHhcCCH---HHHHHHHhcCCcchhcc
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSD--SLILRKTSLTSLRETPLHISALLGHL---DFTKALLNHKPELAKEL   78 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~~~g~t~L~~A~~~g~~---~~~~~Ll~~~~~~~~~~   78 (247)
                      .++.+|..|.||||+|++.|+...+.......  .........|..|.||||+|+..|+.   +++++|++.|+++ +.+
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~   87 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGK   87 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-ccc
Confidence            35677888999999999998843222211111  11111133466789999999988876   4678888888887 666


Q ss_pred             c-CCCCcHHHHHHhcCCHHHHHHHHHc-CCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcc
Q 025876           79 D-SLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA  143 (247)
Q Consensus        79 ~-~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  143 (247)
                      + ..|.||||+|+..|+.+++++|+.. +.++ +..+..|+||||+|+..|+.+++++|++.|++++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6 5889999999999999999998874 7776 6788889999999999999999999988887764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=2.2e-23  Score=175.50  Aligned_cols=215  Identities=24%  Similarity=0.280  Sum_probs=185.3

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      ..|.+|.+|.|+||.|+..|+.++++.|++..+.+   ...|..|.+|||+|+..|+.+++++++..+... +.....|.
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~l---dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~  116 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL---DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENE  116 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhh---hhhhccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCc
Confidence            56788999999999999999999999999988876   334566999999999999999999999998544 88899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC--------ccccccCCCcHHHH
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD--------SALVKFHGDTVLHF  155 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--------~~~~~~~g~t~l~~  155 (247)
                      ||||.|+..|+.+++.+|++++++. .+.|.++.|+|.+|++.|..+++++|+.....        ....+..+-+|||.
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHl  195 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHL  195 (854)
T ss_pred             CccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcch
Confidence            9999999999999999999999999 58999999999999999999999999975221        22335678899999


Q ss_pred             HHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeeccccCCChhhhHHhhhhhhhhhhcc
Q 025876          156 KAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSLIVVTE  223 (247)
Q Consensus       156 A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (247)
                      |+++|+.++++.|+..+-..+.....-|+||-|+..+....+..++..++.+....-..+..+.++..
T Consensus       196 aakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  196 AAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             hhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence            99999999999999999888888888999999999999999988888777776655555555554443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=2.3e-22  Score=159.17  Aligned_cols=159  Identities=12%  Similarity=0.087  Sum_probs=116.8

Q ss_pred             ccccCCCCch-HHHHHHHcCCHHHHHHHHhcCchhhhccc-cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcc-cCC
Q 025876            5 AREHDEDSTH-KLYEASLRGSVRSLNTLMQSDSLILRKTS-LTSLRETPLHISALLGHLDFTKALLNHKPELAKEL-DSL   81 (247)
Q Consensus         5 ~~~~~~~~~~-~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~-~~~   81 (247)
                      +..+|..+.| +||.|+..|+.+++++|++.|+++..... .+..|.||||+|+..|+.+++++|+++|+++ +.. +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCC
Confidence            4567777765 46666677888888888888887743221 1346888888888888888888888888887 553 457


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCC
Q 025876           82 KHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS  161 (247)
Q Consensus        82 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  161 (247)
                      |.||||.|+..|+.+++++|+..|+++ +..+..|+||||+|+..++..++.++..  .   ..+..+.+|++++   ++
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICD--N---EISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcC--C---cccccccChhhhh---cc
Confidence            888888888888888888888888888 6788888888888888877777755543  2   2345566777764   35


Q ss_pred             cceeeccccccc
Q 025876          162 LCTQRLPSNYAA  173 (247)
Q Consensus       162 ~~~~~~l~~~~~  173 (247)
                      .+++++|+.+..
T Consensus       175 ~ei~~~Lish~v  186 (300)
T PHA02884        175 FDILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            677776665554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.6e-22  Score=147.68  Aligned_cols=132  Identities=14%  Similarity=0.117  Sum_probs=116.1

Q ss_pred             cccCCCcHHHHHHhcCCH----HHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHH---HHHHHHHcCCccccccC-CC
Q 025876           44 LTSLRETPLHISALLGHL----DFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQ---IVKELLLANKDACLVAD-QD  115 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~---~~~~Ll~~~~~~~~~~~-~~  115 (247)
                      .+..+.++||.||+.|+.    +++++|.+.+..+ +..|..|+||||+|+..|..+   ++++|+..|+++ +..+ ..
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            455688999999999998    5666778888776 788999999999999998755   489999999998 6676 58


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCCCcHHHHHHhcCCcceeeccccccccccc
Q 025876          116 GRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDW  177 (247)
Q Consensus       116 g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  177 (247)
                      |+||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++|+.+++....
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999995 7999999999999999999999999999999988765543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=2.4e-22  Score=180.25  Aligned_cols=174  Identities=24%  Similarity=0.181  Sum_probs=139.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhc--CchhhhccccccCCCcHHH-HHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQS--DSLILRKTSLTSLRETPLH-ISALLGHLDFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~--~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                      .+...++.|++.|+.+.++.+++.  +.++   +..|..|+|||| .|+..++.+++++|++.+.     .+..|.||||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i---n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh   87 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNI---NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLH   87 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCC---CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHH
Confidence            467899999999999999999988  4444   556778999999 8889999999999999886     4677999999


Q ss_pred             HHHhcC---CHHHHHHHHHcCCc---------cccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccc---------
Q 025876           88 LAAAEG---HVQIVKELLLANKD---------ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK---------  146 (247)
Q Consensus        88 ~A~~~g---~~~~~~~Ll~~~~~---------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------  146 (247)
                      .|+..+   ...+++.+...+..         .....+..|.||||+|+..|+.+++++|+++|++++..+         
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC
Confidence            998732   22344444443322         001123569999999999999999999999999998653         


Q ss_pred             -----cCCCcHHHHHHhcCCcceeeccccccc-cccccCCccchhhHHHhhc
Q 025876          147 -----FHGDTVLHFKAEHLSLCTQRLPSNYAA-WLDWTLSICYPKHLTIETR  192 (247)
Q Consensus       147 -----~~g~t~l~~A~~~~~~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~~  192 (247)
                           ..|.||||.|+..++.+++++|++.++ ....+..|+||+|.|+...
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence                 358999999999999999999887775 4456668999999999764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=155.27  Aligned_cols=139  Identities=15%  Similarity=0.084  Sum_probs=118.2

Q ss_pred             cccCCCc-HHHHHHhcCCHHHHHHHHhcCCcchhcc----cCCCCcHHHHHHhcCCHHHHHHHHHcCCcccccc-CCCCC
Q 025876           44 LTSLRET-PLHISALLGHLDFTKALLNHKPELAKEL----DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVA-DQDGR  117 (247)
Q Consensus        44 ~~~~g~t-~L~~A~~~g~~~~~~~Ll~~~~~~~~~~----~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~-~~~g~  117 (247)
                      +|..|++ +||.|++.|+.+++++|+++|+++ +..    +..|.||||+|+..++.+++++|+.+|+++ +.. +..|.
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~  105 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKI  105 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCC
Confidence            3444555 577788889999999999999998 655    468999999999999999999999999999 554 56899


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHH
Q 025876          118 IPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLT  188 (247)
Q Consensus       118 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a  188 (247)
                      ||||+|+..++.+++++|+..|++++.++..|.||||+|+..++.+++.++..    ...+..+.+|.+++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  172 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD----NEISNFYKHPKKIL  172 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC----CcccccccChhhhh
Confidence            99999999999999999999999999999999999999999888887765542    22455677888764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=1.6e-21  Score=166.05  Aligned_cols=182  Identities=13%  Similarity=0.022  Sum_probs=149.8

Q ss_pred             ccccCCCCchHHHHHHHcC-------CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcC--CHHHHHHHHhcCCc--
Q 025876            5 AREHDEDSTHKLYEASLRG-------SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLG--HLDFTKALLNHKPE--   73 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g-------~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~--   73 (247)
                      +|.+|+.|.||||+|+..+       +.++++.|+++|+.+   +..|..|.||||+|+...  ..+++++|++....  
T Consensus       168 i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~---~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~  244 (631)
T PHA02792        168 TDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM---RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGN  244 (631)
T ss_pred             cccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc---CccCCCCChHHHHHHHcccchHHHHHHHHhcccccc
Confidence            5788999999999999999       899999999999988   667788999999999999  78899988864110  


Q ss_pred             --------------------ch----------------------------------------------------------
Q 025876           74 --------------------LA----------------------------------------------------------   75 (247)
Q Consensus        74 --------------------~~----------------------------------------------------------   75 (247)
                                          +.                                                          
T Consensus       245 ~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiI  324 (631)
T PHA02792        245 ELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVI  324 (631)
T ss_pred             chHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHH
Confidence                                00                                                          


Q ss_pred             --------hcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCC--CcHHHHHHhcCcH---HHHHHHHHcCCCc
Q 025876           76 --------KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDG--RIPLHLAAMRGRV---EVVQELISANFDS  142 (247)
Q Consensus        76 --------~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g--~t~L~~A~~~~~~---~~v~~Ll~~~~~~  142 (247)
                              .........+++.|+..|+.+++++|+++|+++ +..|..|  .||||+|......   +++++|+.+|+++
T Consensus       325 K~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI  403 (631)
T PHA02792        325 KCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI  403 (631)
T ss_pred             HHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc
Confidence                    000012445678899999999999999999998 6677664  6899988776554   4688889999999


Q ss_pred             cccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHh
Q 025876          143 ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIE  190 (247)
Q Consensus       143 ~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~  190 (247)
                      +.+|..|.||||+|+..++.+++++|+..++. ...+..|.||+|+|+.
T Consensus       404 N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        404 NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999888774 4556689999999975

>PHA02792 ankyrin-like protein; Provisional

Probab=99.87  E-value=6.3e-22  Score=168.50  Aligned_cols=202  Identities=11%  Similarity=-0.031  Sum_probs=157.8

Q ss_pred             CCccccCCCCchHHHHHHH-cCCHHHHHHHHhcCchhhh---------------------------------ccccccCC
Q 025876            3 IGAREHDEDSTHKLYEASL-RGSVRSLNTLMQSDSLILR---------------------------------KTSLTSLR   48 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~-~g~~~~~~~Ll~~~~~~~~---------------------------------~~~~~~~g   48 (247)
                      .|.|.++..+.+++++|+. .|+.+++++|++.|++...                                 .+.+|..|
T Consensus        96 AdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  175 (631)
T PHA02792         96 LEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMG  175 (631)
T ss_pred             CCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCC
Confidence            3567777788999999976 6999999999999976311                                 11345569


Q ss_pred             CcHHHHHHhcC-------CHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC--CHHHHHHHHHcCCccc----------
Q 025876           49 ETPLHISALLG-------HLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG--HVQIVKELLLANKDAC----------  109 (247)
Q Consensus        49 ~t~L~~A~~~g-------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~----------  109 (247)
                      .||||+|+..+       +.++++.|+++|+++ +..|..|.||||+|+...  ..|++++|+...-.-+          
T Consensus       176 ~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~  254 (631)
T PHA02792        176 KTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYL  254 (631)
T ss_pred             CchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHH
Confidence            99999999999       899999999999998 788999999999999998  7788888875311000          


Q ss_pred             -----------c-------------------------------------------------------------------c
Q 025876          110 -----------L-------------------------------------------------------------------V  111 (247)
Q Consensus       110 -----------~-------------------------------------------------------------------~  111 (247)
                                 +                                                                   .
T Consensus       255 ~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~  334 (631)
T PHA02792        255 RKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL  334 (631)
T ss_pred             HHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc
Confidence                       0                                                                   1


Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCC--CcHHHHHHhcCCcc---eeecccccc-ccccccCCccchh
Q 025876          112 ADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG--DTVLHFKAEHLSLC---TQRLPSNYA-AWLDWTLSICYPK  185 (247)
Q Consensus       112 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g--~t~l~~A~~~~~~~---~~~~l~~~~-~~~~~~~~g~~pl  185 (247)
                      .......+++.|+..|+.++|++|+++|++++.+|..|  .||||+|+.....+   ++++++.++ +....+..|.|||
T Consensus       335 ~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPL  414 (631)
T PHA02792        335 YRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSIL  414 (631)
T ss_pred             ccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchH
Confidence            11134567889999999999999999999999998775  69999987766654   466667766 4566777899999


Q ss_pred             hHHHhhcccceeeccccCCC
Q 025876          186 HLTIETRGAVAILMMPSVGG  205 (247)
Q Consensus       186 ~~a~~~~~~~~~~~l~~~~~  205 (247)
                      |+|+..+....+..|++.+.
T Consensus       415 h~Aa~~~n~eivelLLs~GA  434 (631)
T PHA02792        415 YYCIESHSVSLVEWLIDNGA  434 (631)
T ss_pred             HHHHHcCCHHHHHHHHHCCC
Confidence            99998888777777665543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=142.89  Aligned_cols=130  Identities=16%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             cccccCCCcHHHHHHhcCCHHHHHHHHhcC------CcchhcccCCCCcHHHHHHhcCCH---HHHHHHHHcCCcccccc
Q 025876           42 TSLTSLRETPLHISALLGHLDFTKALLNHK------PELAKELDSLKHSPLHLAAAEGHV---QIVKELLLANKDACLVA  112 (247)
Q Consensus        42 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~------~~~~~~~~~~g~t~l~~A~~~g~~---~~~~~Ll~~~~~~~~~~  112 (247)
                      +..|..|.||||+|+..|+..  .++...+      .......|..|.||||+|+..|+.   +++++|+..|+++ +..
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-ccc
Confidence            345667999999999999843  3332221      112245688999999999999986   4688999999998 566


Q ss_pred             C-CCCCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCCCcHHHHHHhcCCcceeecccccccc
Q 025876          113 D-QDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW  174 (247)
Q Consensus       113 ~-~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  174 (247)
                      + ..|+||||+|+..++.+++++|+. .+++++..+..|.||||+|+..++.+++++|+..++.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6 589999999999999999999998 5999999999999999999999999999999887754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-21  Score=159.92  Aligned_cols=182  Identities=23%  Similarity=0.239  Sum_probs=131.9

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      +++..+.+|.|+||-+|.-.+.++|++|++.++++   +..|..|+||||.|+..|+..++++|+.+|+++ ...+..|.
T Consensus        65 ~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V---n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~  140 (527)
T KOG0505|consen   65 SPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV---NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGN  140 (527)
T ss_pred             CccccCCccchhHHHHHhcccHHHHHHHHHhcCCc---cccccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCC
Confidence            45666777777777777777777777777777766   445566777777777777777777777777665 34444444


Q ss_pred             cHHHHHHhcCC--------------------------HHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q 025876           84 SPLHLAAAEGH--------------------------VQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS  137 (247)
Q Consensus        84 t~l~~A~~~g~--------------------------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  137 (247)
                      .|+..+...-.                          ++-+...+..|... +..+..|-|.||+|...|+.++.++|++
T Consensus       141 ~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~  219 (527)
T KOG0505|consen  141 MPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL-DARHARGATALHVAAANGYTEVAALLLQ  219 (527)
T ss_pred             CccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc-cccccccchHHHHHHhhhHHHHHHHHHH
Confidence            44433221111                          11122333444444 3555559999999999999999999999


Q ss_pred             cCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccC-CccchhhHHHh
Q 025876          138 ANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTL-SICYPKHLTIE  190 (247)
Q Consensus       138 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~-~g~~pl~~a~~  190 (247)
                      .|.+++.+|.+|+||||.|+.-|..+++++|..+++...-.. .|.+|+.+|.+
T Consensus       220 ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  220 AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            999999999999999999999999999999988887655444 79999999875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=2.3e-20  Score=131.40  Aligned_cols=142  Identities=25%  Similarity=0.156  Sum_probs=116.4

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCc
Q 025876           49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR  128 (247)
Q Consensus        49 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  128 (247)
                      ...+-+|+..+....|+.||+..++.++.+|.+|+||||-|+..|+.++++.|+..|++. ...-..||||||.||+-.+
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccc
Confidence            345788999999999999999998888999999999999999999999999999999988 6788889999999999999


Q ss_pred             HHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc-ceeecccc-ccc-cccccCCccchhhHHHhh
Q 025876          129 VEVVQELISANFDSALVKFHGDTVLHFKAEHLSL-CTQRLPSN-YAA-WLDWTLSICYPKHLTIET  191 (247)
Q Consensus       129 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~-~~~~~l~~-~~~-~~~~~~~g~~pl~~a~~~  191 (247)
                      .+|+-+|+++|++++.......||||.|+...+. ..+++|+. .+- .-.....+.||+..|-+.
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            9999999999999999988889999999877654 44454432 222 222333567888877654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=1.1e-19  Score=128.02  Aligned_cols=143  Identities=21%  Similarity=0.237  Sum_probs=126.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG   93 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g   93 (247)
                      -.+.+|+..+....|+.|++..++..  +..|.+|-||||-|+..|+.++++.|+..|++. +.+...|+||||-||.-.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~v--NtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHV--NTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccc--cccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhccc
Confidence            45889999999999999999988654  566777999999999999999999999999998 888999999999999999


Q ss_pred             CHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCc-HHHHHHHHH-cCCCccccccCCCcHHHHHHhcC
Q 025876           94 HVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-VEVVQELIS-ANFDSALVKFHGDTVLHFKAEHL  160 (247)
Q Consensus        94 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~  160 (247)
                      +.+++-+|+++|+++ +.......||||+|+...+ ...+++|+. .++++-.++..+.||+.+|-+.+
T Consensus       142 N~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             chhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999999 6777778899999997665 456777765 67888888999999999997764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=1e-20  Score=159.69  Aligned_cols=191  Identities=26%  Similarity=0.259  Sum_probs=163.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCch----------hhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSL----------ILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~----------~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      +-|.-|++.|+++.+..|++....          ....+..|.+|.|+||.|+..|+.+++++|++..+-+ ...|..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCc
Confidence            457889999999999999986211          1222456678999999999999999999999998876 77889999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC  163 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  163 (247)
                      +|||+|+..|+.+++++|+..+..+ +..+..|.||||.|++.|+.+++++|+.++++.-..+..+.|++..|++.|..+
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            9999999999999999999999666 789999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccc---------cccccCCccchhhHHHhhcccceeeccccCCCh
Q 025876          164 TQRLPSNYAA---------WLDWTLSICYPKHLTIETRGAVAILMMPSVGGI  206 (247)
Q Consensus       164 ~~~~l~~~~~---------~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  206 (247)
                      ++++|+...-         ....+..+.+|+|.|+.+++...+..++..+-.
T Consensus       163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d  214 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD  214 (854)
T ss_pred             HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC
Confidence            9997754311         233444678999999999998888887766443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=3.6e-20  Score=151.07  Aligned_cols=151  Identities=26%  Similarity=0.306  Sum_probs=122.9

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHH--------------------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLD--------------------   62 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~--------------------   62 (247)
                      .++|.+|..++||||.|+.+|+..++.+|++.|+++..   .+.+|..|+-.|...--.+                    
T Consensus        97 a~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~a---vNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~  173 (527)
T KOG0505|consen   97 ANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLA---VNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAE  173 (527)
T ss_pred             CCccccccccCCcchhhcccccHHHHHHHHHhhhhhhh---ccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhh
Confidence            46788999999999999999999999999999987733   3344555544332221111                    


Q ss_pred             ------HHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876           63 ------FTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI  136 (247)
Q Consensus        63 ------~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  136 (247)
                            -+...+..|... ...+..|.|+||+|+..|..++.++|+..+.++ +..|..||||||.|+.-|+.+++++|+
T Consensus       174 e~~ml~D~~q~l~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~  251 (527)
T KOG0505|consen  174 EQTMLDDARQWLNAGAEL-DARHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLV  251 (527)
T ss_pred             HHHHHHHHHHHHhccccc-cccccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHH
Confidence                  122233345554 556666999999999999999999999999999 799999999999999999999999999


Q ss_pred             HcCCCccccccCCCcHHHHHHh
Q 025876          137 SANFDSALVKFHGDTVLHFKAE  158 (247)
Q Consensus       137 ~~~~~~~~~~~~g~t~l~~A~~  158 (247)
                      ++|++.+.....|.||+.+|..
T Consensus       252 ~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  252 EHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HhhcccchhhhcCCCCccchhh
Confidence            9999999999999999998865

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.2e-20  Score=141.85  Aligned_cols=111  Identities=31%  Similarity=0.434  Sum_probs=63.8

Q ss_pred             cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 025876           44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA  123 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  123 (247)
                      .|..|.+|||+||+.|+..+++.|+..|+.+ +..+...-||||+|+..|+.++++.|++..+++ +..|..|+||||||
T Consensus        30 gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kadv-navnehgntplhya  107 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYA  107 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhh
Confidence            3444555556655555555555555555554 444444455556555555555555555555555 45555555566666


Q ss_pred             HhcCcHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876          124 AMRGRVEVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus       124 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      |.-|+..+++-|+..|+.++.-++.|.|||..|
T Consensus       108 cfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            555555555555555555555555555555543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=7e-19  Score=116.05  Aligned_cols=88  Identities=35%  Similarity=0.514  Sum_probs=57.0

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHH
Q 025876           52 LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV  131 (247)
Q Consensus        52 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  131 (247)
                      ||+|++.|+.+++++|++.+.++ +.    |.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            56666666666666666666554 22    666777777777777777777666666 5566667777777777777777


Q ss_pred             HHHHHHcCCCcccc
Q 025876          132 VQELISANFDSALV  145 (247)
Q Consensus       132 v~~Ll~~~~~~~~~  145 (247)
                      +++|+++|++++.+
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            77777666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.5e-19  Score=134.76  Aligned_cols=119  Identities=26%  Similarity=0.369  Sum_probs=110.1

Q ss_pred             CCCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCC
Q 025876            2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL   81 (247)
Q Consensus         2 ~~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   81 (247)
                      |-|.|..|..|.+|||||++.|+..+++.|++.|+.+   +..+.-..||||+|+.+||-++++.|++..+++ +..+.-
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarv---n~tnmgddtplhlaaahghrdivqkll~~kadv-navneh   99 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV---NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEH   99 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhccccc---ccccCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhcc
Confidence            5688999999999999999999999999999999988   444555789999999999999999999999998 889999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876           82 KHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM  125 (247)
Q Consensus        82 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  125 (247)
                      |+||||+||.-|...+.+-|+..|+.+ +..|+.|.|||..|.-
T Consensus       100 gntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAKP  142 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhch
Confidence            999999999999999999999999999 7999999999998743

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=4.6e-18  Score=118.93  Aligned_cols=123  Identities=37%  Similarity=0.557  Sum_probs=76.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                      +|..|.|+||+|+..|+.+++++|+..+...   ...+..|.+|+|.|+..++.+++++|+..+..+ +..+..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~---~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            3455666666666666666666666666543   233445666666666666666666666666544 445556666666


Q ss_pred             HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHH
Q 025876           88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL  135 (247)
Q Consensus        88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  135 (247)
                      +|+..++.+++++|+..+... +..+..|.||+++|...++.+++++|
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666666666665554 44556666666666666666666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=4.7e-18  Score=118.85  Aligned_cols=122  Identities=39%  Similarity=0.531  Sum_probs=112.8

Q ss_pred             ccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876           45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA  124 (247)
Q Consensus        45 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  124 (247)
                      |..|.||||+|+..++.+++++|++.+... +..+..|.||+|.|+..+..+++++|+..+... +..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            455999999999999999999999999886 778899999999999999999999999999876 677889999999999


Q ss_pred             hcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876          125 MRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus       125 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      ..++.+++++|+..+.+.+..+..+.||++.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            99999999999999999999999999999999999888887765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=3.7e-18  Score=112.57  Aligned_cols=85  Identities=32%  Similarity=0.429  Sum_probs=77.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCH
Q 025876           16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHV   95 (247)
Q Consensus        16 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~   95 (247)
                      ||+|++.|+.+++++|++.+.+.   ..    |.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~---~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI---NL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT---TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC---CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCH
Confidence            79999999999999999988765   21    889999999999999999999999998 88899999999999999999


Q ss_pred             HHHHHHHHcCCcc
Q 025876           96 QIVKELLLANKDA  108 (247)
Q Consensus        96 ~~~~~Ll~~~~~~  108 (247)
                      +++++|+++|+++
T Consensus        73 ~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   73 EIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHTTT-T
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=2.4e-18  Score=146.83  Aligned_cols=166  Identities=18%  Similarity=0.181  Sum_probs=143.6

Q ss_pred             CccccCCCCchHHHHHHHc---CCHHHHHHHHhcCchhhhcccc--ccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcc
Q 025876            4 GAREHDEDSTHKLYEASLR---GSVRSLNTLMQSDSLILRKTSL--TSLRETPLHISALLGHLDFTKALLNHKPELAKEL   78 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~   78 (247)
                      +.+.+..-|.|.||.|..+   ++.++++.|++-.+...+....  ...|.||||.|+.+.+.++|++|++.|+++ +.+
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aR  213 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HAR  213 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhH
Confidence            4566777899999999984   6779999999877655443222  245999999999999999999999999886 321


Q ss_pred             ---------c--------------CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHH
Q 025876           79 ---------D--------------SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL  135 (247)
Q Consensus        79 ---------~--------------~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  135 (247)
                               |              -.|..||..|+..+..+++++|+++++++ +..|+.|+|.||..+..-..+|..++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~  292 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLA  292 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHH
Confidence                     1              24678999999999999999999999999 89999999999999999899999999


Q ss_pred             HHcCCC--ccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876          136 ISANFD--SALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus       136 l~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      +++|++  ....|..|.|||..|++.|..++.+.+++.
T Consensus       293 L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  293 LELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999  888899999999999999999998877665

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=3.2e-17  Score=140.06  Aligned_cols=206  Identities=22%  Similarity=0.219  Sum_probs=156.1

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchh------hhccccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcc
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLI------LRKTSLTSLRETPLHISALL---GHLDFTKALLNHKPEL   74 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~------~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~   74 (247)
                      +++..+...+.++..|...|..+.+..+.......      ...+.....|.|.||.|.-+   ++.++++.|++..+.+
T Consensus        93 ~p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~l  172 (782)
T KOG3676|consen   93 GPNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKL  172 (782)
T ss_pred             CcchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHH
Confidence            34444445557899999999999888877654211      01122234599999999974   5668999999977654


Q ss_pred             hhc----ccCCCCcHHHHHHhcCCHHHHHHHHHcCCcccc-----------c--c---------CCCCCcHHHHHHhcCc
Q 025876           75 AKE----LDSLKHSPLHLAAAEGHVQIVKELLLANKDACL-----------V--A---------DQDGRIPLHLAAMRGR  128 (247)
Q Consensus        75 ~~~----~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~-----------~--~---------~~~g~t~L~~A~~~~~  128 (247)
                      .+.    ....|.||||+|+...+.++|++|+..|+++..           .  .         -..|+.||..|+..++
T Consensus       173 ind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq  252 (782)
T KOG3676|consen  173 INDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQ  252 (782)
T ss_pred             hhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCC
Confidence            332    357899999999999999999999999998822           1  0         1248899999999999


Q ss_pred             HHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc--c-cccCCccchhhHHHhhcccceeeccccCCC
Q 025876          129 VEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW--L-DWTLSICYPKHLTIETRGAVAILMMPSVGG  205 (247)
Q Consensus       129 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~--~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  205 (247)
                      .+|+++|+++|+|++.+|..|+|.||..+..-..++-.+++..++.  . -.+..|.|||.+|+.-+.......+++...
T Consensus       253 ~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k  332 (782)
T KOG3676|consen  253 PEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRK  332 (782)
T ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhc
Confidence            9999999999999999999999999999888667777777777765  3 344479999999997666665555554433


Q ss_pred             hhhh
Q 025876          206 ITFF  209 (247)
Q Consensus       206 ~~~~  209 (247)
                      ++.|
T Consensus       333 ~~~W  336 (782)
T KOG3676|consen  333 FTDW  336 (782)
T ss_pred             ccce
Confidence            3333

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-17  Score=146.36  Aligned_cols=179  Identities=18%  Similarity=0.178  Sum_probs=131.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      +-.|+|-.||..|+.|.+.+|+..|+++   ...|..|.+||.+|+..||..+|+.|+...+++....|..+-|+|.+||
T Consensus       756 n~~t~LT~acaggh~e~vellv~rgani---ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANI---EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccc---cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            3467788888888888888888888766   5556778888888888888888888888877776667777888888888


Q ss_pred             hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcccc--ccCCCcHHHHHHhcCCcceeecc
Q 025876           91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALV--KFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      ..|..+++++|+..|+.. ...+-+..|||.+|...|+.+++.+|+..|..++.+  .+.|-.||+.|..+|+.+....|
T Consensus       833 sggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            888888888888887776 466777778888888888888888888877666666  55677777777777777777766


Q ss_pred             ccccccccccC--CccchhhHHHhhcc
Q 025876          169 SNYAAWLDWTL--SICYPKHLTIETRG  193 (247)
Q Consensus       169 ~~~~~~~~~~~--~g~~pl~~a~~~~~  193 (247)
                      ++-+...+..+  +-+|+|-+|+--+.
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr  938 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGR  938 (2131)
T ss_pred             hcccchhccccccccccceeeccccCc
Confidence            66655443333  34555555554333

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.69  E-value=1.8e-17  Score=145.14  Aligned_cols=201  Identities=17%  Similarity=0.137  Sum_probs=160.1

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+|.-+|+.|.+||.+|+..||..+|+.|+...+++..+.  |..+.|+|-+||..|+.+++++||..|+.- ..++...
T Consensus       781 aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQs--drtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsD  857 (2131)
T KOG4369|consen  781 ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQS--DRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSD  857 (2131)
T ss_pred             ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhc--ccccCceEEEecCCCcchHHHHHHHhhccc-cccchhh
Confidence            3566788899999999999999999999999988875544  455889999999999999999999999876 6677778


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccc-cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcccc-ccCCCcHHHHHHhcC
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLV-ADQDGRIPLHLAAMRGRVEVVQELISANFDSALV-KFHGDTVLHFKAEHL  160 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~  160 (247)
                      +|||.+|...|..++++.|+..|..+... ..+.|-.||++|...|+.+.++.|++.|-++|.. ..+.+|+|.+|+..|
T Consensus       858 ytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence            89999999999999999999999777332 2456778999999999988888888888888877 556678888888888


Q ss_pred             Ccceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCCCh
Q 025876          161 SLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVGGI  206 (247)
Q Consensus       161 ~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  206 (247)
                      ..+++.+|+.+.+.. .+-..|.|||+-++.++..+.-.+|+..+..
T Consensus       938 r~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  938 RPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             cchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            888888777666544 3444688888888877765555555444433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=3.2e-15  Score=115.31  Aligned_cols=128  Identities=30%  Similarity=0.372  Sum_probs=111.5

Q ss_pred             cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCC-----HHHHHHHHHcCC--ccccccCCCC
Q 025876           44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGH-----VQIVKELLLANK--DACLVADQDG  116 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~-----~~~~~~Ll~~~~--~~~~~~~~~g  116 (247)
                      .+..+.++++.++..+..+++++++..+.++ +..+..|.||+|+|+..++     .+++++|+..++  ......+..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            3455889999999999999999999999888 8889999999999999998     899999999988  4546778999


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccc
Q 025876          117 RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYA  172 (247)
Q Consensus       117 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  172 (247)
                      .||||+|+..|+.+++++|+..+++++..+..|.|++++|+..++.+++..+.+.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999888899999999999999988888777754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=2.4e-15  Score=116.04  Aligned_cols=130  Identities=30%  Similarity=0.410  Sum_probs=108.2

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCC-----HHHHHHHHhcCC--cchhcc
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGH-----LDFTKALLNHKP--ELAKEL   78 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~~~~Ll~~~~--~~~~~~   78 (247)
                      ...+..+.++++.++..+..+.+++++..+.++   +..+..|.||||+|+..++     .+++++|++.|.  +.....
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV---NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc---ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            344556788889999999888888888888877   4556668899999999888     889999998888  455677


Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q 025876           79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN  139 (247)
Q Consensus        79 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  139 (247)
                      +..|.||||+|+..|+.+++++|+..++++ ...+..|.|+++.|+..++.+++..++..+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            888999999999998888999888888888 567888889999999888888888888865

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=1.5e-15  Score=96.02  Aligned_cols=103  Identities=22%  Similarity=0.256  Sum_probs=82.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG   93 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g   93 (247)
                      ..+.|++++|.++-|+..+..+-+++..    ..|++|||+|+-.|...++++|+..|+++ +.+|+.|-|||--|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~----~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI----YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH----hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHh
Confidence            4577888999999999888888655332    23889999999999999999999999888 788899999999999999


Q ss_pred             CHHHHHHHHHcCCccccccCCCCCcHHHH
Q 025876           94 HVQIVKELLLANKDACLVADQDGRIPLHL  122 (247)
Q Consensus        94 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  122 (247)
                      |.+||++|++.|++- ...-..|.+.+-.
T Consensus        79 H~~cVklLL~~GAdr-t~~~PdG~~~~ea  106 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADR-TIHAPDGTALIEA  106 (117)
T ss_pred             hHHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence            999999999988877 4566667654443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=1.1e-14  Score=92.16  Aligned_cols=102  Identities=23%  Similarity=0.296  Sum_probs=90.3

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHH
Q 025876           51 PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE  130 (247)
Q Consensus        51 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  130 (247)
                      -+.|++++|..+-|+..+..|-++ +.. ..|++|||+|+-+|..+++++|+..|+++ +..|+.|-|||..|+-.||.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nV-n~~-~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNV-NEI-YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccH-HHH-hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHH
Confidence            468999999999999999988666 433 37899999999999999999999999999 789999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCcHHHH
Q 025876          131 VVQELISANFDSALVKFHGDTVLHF  155 (247)
Q Consensus       131 ~v~~Ll~~~~~~~~~~~~g~t~l~~  155 (247)
                      ||++|++.|++-.....+|.+.+..
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhh
Confidence            9999999999998888888776644

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.55  E-value=3.6e-14  Score=125.35  Aligned_cols=105  Identities=32%  Similarity=0.351  Sum_probs=96.3

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHH
Q 025876           51 PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE  130 (247)
Q Consensus        51 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  130 (247)
                      .|+.|+..|+.+.+++|++.|+++ +..|..|.||||+|+..|+.+++++|+..|+++ +..|..|+||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            488999999999999999999998 888999999999999999999999999999998 789999999999999999999


Q ss_pred             HHHHHHHc-------CCCccccccCCCcHHHHHH
Q 025876          131 VVQELISA-------NFDSALVKFHGDTVLHFKA  157 (247)
Q Consensus       131 ~v~~Ll~~-------~~~~~~~~~~g~t~l~~A~  157 (247)
                      ++++|+.+       +++.+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999998       8888888888888766543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=4.7e-14  Score=83.56  Aligned_cols=52  Identities=42%  Similarity=0.651  Sum_probs=19.2

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHH
Q 025876           49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKEL  101 (247)
Q Consensus        49 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~L  101 (247)
                      .||||+|++.|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34444444444444444444444333 33344444444444444444444433

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=1e-13  Score=122.50  Aligned_cols=106  Identities=23%  Similarity=0.279  Sum_probs=93.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG   93 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g   93 (247)
                      ..|+.|+..|+.+.++.|++.|+++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi---n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP---NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCC
Confidence            3588999999999999999999877   566788999999999999999999999999998 889999999999999999


Q ss_pred             CHHHHHHHHHc-------CCccccccCCCCCcHHHHHH
Q 025876           94 HVQIVKELLLA-------NKDACLVADQDGRIPLHLAA  124 (247)
Q Consensus        94 ~~~~~~~Ll~~-------~~~~~~~~~~~g~t~L~~A~  124 (247)
                      +.+++++|+.+       +++. ...+..|.+|+..+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            99999999998       6666 456666776665443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=8.5e-14  Score=106.06  Aligned_cols=122  Identities=24%  Similarity=0.177  Sum_probs=81.9

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      ..+||..+.-.|..+....||..-..+ +..|..|.|+|..|+..|+.+.+++|+..|+++....+..+.||||.|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            456666666666666666666654333 5666777777777777777777777777777765556666667777777777


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      +.++.++|++.|+.....+.-|+|+-..|+.-|+.+++..+.+
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            7777777777777776666677777777777776666665543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2.8e-14  Score=84.97  Aligned_cols=56  Identities=34%  Similarity=0.423  Sum_probs=24.3

Q ss_pred             HHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876          101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus       101 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      |++++....+..|..|.||||+|+.+|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34455233356677777777777777777777777777777777777777777765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=1e-13  Score=82.05  Aligned_cols=54  Identities=44%  Similarity=0.700  Sum_probs=39.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876           82 KHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI  136 (247)
Q Consensus        82 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  136 (247)
                      |.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578888888888888888888888777 566888888888888888888888875

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=3.9e-13  Score=110.17  Aligned_cols=119  Identities=21%  Similarity=0.225  Sum_probs=77.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCC
Q 025876           15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGH   94 (247)
Q Consensus        15 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~   94 (247)
                      .|.-|+..|..+.|+..+..-.+.   ..-++.|.|+||-|+..||.++|++|++.|+++ |..|.+|+||||.|++.++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp---SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP---SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC---CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCc
Confidence            355566667777777766554433   223345777777777777777777777777776 6677777777777777777


Q ss_pred             HHHHHHHHHcCCccccccCCCCCcHHHHHH--hcCcHHHHHHHHH
Q 025876           95 VQIVKELLLANKDACLVADQDGRIPLHLAA--MRGRVEVVQELIS  137 (247)
Q Consensus        95 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~  137 (247)
                      +.+++.|++.|+.+....-.++.|+..-+-  ..|+..|.+||..
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            777777777776665455556666655543  3456667777654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=9.8e-13  Score=100.36  Aligned_cols=122  Identities=20%  Similarity=0.246  Sum_probs=110.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      ....+|..++-.|+++....|++.--+.   +..|..|.++|..|+..|+.+.+++|++.|+++....+..++||||.|+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v---n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV---NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh---hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            3567999999999999999999874333   5667889999999999999999999999999997778889999999999


Q ss_pred             hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876           91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI  136 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  136 (247)
                      ..|+.++.++|+..|+.. ...|.-|+|+-..|+.-|+.+||..+-
T Consensus        88 LSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999988 788999999999999999999887764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=1e-13  Score=82.60  Aligned_cols=56  Identities=41%  Similarity=0.640  Sum_probs=22.8

Q ss_pred             HHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 025876           67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA  123 (247)
Q Consensus        67 Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  123 (247)
                      |++.+....+..|..|.||||+|+..|+.+++++|+..++++ +..|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            344452222566666666666666666666666666666666 56666666666665

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=3.4e-13  Score=110.52  Aligned_cols=116  Identities=24%  Similarity=0.214  Sum_probs=100.2

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHH
Q 025876           52 LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV  131 (247)
Q Consensus        52 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  131 (247)
                      |.=|+..|-+++|+..+..-.++ ...+..|-|+||-|+..||.++|+||+.+|+++ +..|..||||||.|+.-+++.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            45577889999999999887777 778899999999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHHcCCCcccc-ccCCCcHHHHH--HhcCCcceeeccc
Q 025876          132 VQELISANFDSALV-KFHGDTVLHFK--AEHLSLCTQRLPS  169 (247)
Q Consensus       132 v~~Ll~~~~~~~~~-~~~g~t~l~~A--~~~~~~~~~~~l~  169 (247)
                      ++.|.+.|+.+-.. -.++.|+..-+  ...|...|.++|.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999887665 55677887664  4566667777663

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.18  E-value=2.6e-11  Score=104.52  Aligned_cols=102  Identities=22%  Similarity=0.240  Sum_probs=88.8

Q ss_pred             HHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCc
Q 025876           63 FTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS  142 (247)
Q Consensus        63 ~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~  142 (247)
                      +--++-..+.+..+.+|..|+|+||+|++.+..+++++|+++|.++..+...+|+||||-|+.+|+++|+-+|+.+|+..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            34445556666678899999999999999999999999999999996666689999999999999999999999999999


Q ss_pred             cccccCCCcHHHHHHhcCCcce
Q 025876          143 ALVKFHGDTVLHFKAEHLSLCT  164 (247)
Q Consensus       143 ~~~~~~g~t~l~~A~~~~~~~~  164 (247)
                      ..+|..|.+||..-++.....+
T Consensus       113 ~i~Dkeglsplq~~~r~~~~~i  134 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSRVLSSTI  134 (1267)
T ss_pred             EEecccCCCHHHHHhhcccccc
Confidence            9999999999998887544433

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.00  E-value=2.4e-09  Score=89.12  Aligned_cols=118  Identities=23%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc-chhcccCCCCcHHHHHHhcCC
Q 025876           16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE-LAKELDSLKHSPLHLAAAEGH   94 (247)
Q Consensus        16 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~A~~~g~   94 (247)
                      +..|+..++.-.++..-..|++..   .++.+..+.||+|++.|+-+++++++++++. ++...|..|.|+||.|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll---~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLL---IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceE---eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            555666666666666555555542   2234466677777777777777777776652 334556666677777666666


Q ss_pred             HHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH
Q 025876           95 VQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS  137 (247)
Q Consensus        95 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  137 (247)
                      .-+.++|+..|+.+ ...|..|.||-.-|.+.|+.+++-||..
T Consensus       947 r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhh
Confidence            66666666666666 4666667777776666666666666654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.99  E-value=6.1e-10  Score=90.62  Aligned_cols=92  Identities=34%  Similarity=0.272  Sum_probs=70.9

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhc
Q 025876           47 LRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR  126 (247)
Q Consensus        47 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  126 (247)
                      ++..++++|++.|.+..++.+.-.|.++ +.+|.+.+|+||+|+..|+++++++|++......+..|+.|+|||.-|...
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3666777888888888887777777776 777777888888888888888888888776665577788888888888888


Q ss_pred             CcHHHHHHHHHcC
Q 025876          127 GRVEVVQELISAN  139 (247)
Q Consensus       127 ~~~~~v~~Ll~~~  139 (247)
                      ++.+++++|-+..
T Consensus       584 ~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQ  596 (622)
T ss_pred             CcHHHHHHHHHHh
Confidence            8888888877643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.96  E-value=8.3e-10  Score=89.85  Aligned_cols=89  Identities=25%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      ...+++|++.|++..++.+.-++.+.   +.+|.+.+|+||.|+..|+.+++++|++......+.+|.+|+|||.-|...
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~---~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDL---ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccc---cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            34455555555555555555555544   334444555555555555555555555533222244555555555555555


Q ss_pred             CCHHHHHHHHHc
Q 025876           93 GHVQIVKELLLA  104 (247)
Q Consensus        93 g~~~~~~~Ll~~  104 (247)
                      +|.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            555555555443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.95  E-value=4.1e-10  Score=97.29  Aligned_cols=84  Identities=23%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      +|.+|..|+|+||+|+..|..++++||+++|.++..+..  +.|.||||-|+..|+++|+-.||.+|..+ ..+|++|.+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~--ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dkegls  121 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDE--ESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKEGLS  121 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccc--cccchHhhHhhhhchHHHHHHHHhcCCce-EEecccCCC
Confidence            566777777777777777777777777777776633322  33777777777777777777777777665 667777777


Q ss_pred             HHHHHHh
Q 025876           85 PLHLAAA   91 (247)
Q Consensus        85 ~l~~A~~   91 (247)
                      ||..-++
T Consensus       122 plq~~~r  128 (1267)
T KOG0783|consen  122 PLQFLSR  128 (1267)
T ss_pred             HHHHHhh
Confidence            7776655

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.93  E-value=5.4e-09  Score=85.59  Aligned_cols=85  Identities=26%  Similarity=0.332  Sum_probs=70.7

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHH
Q 025876           52 LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV  131 (247)
Q Consensus        52 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  131 (247)
                      ||.+++.|+.++.-.|+..|++....-...|.||||+|++.|...-+++|+-+|+++ ...|.+|.||+.+|-..||-++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCchHH
Confidence            888888888888888888888874445567888999999888888888888888888 6888889999999888888887


Q ss_pred             HHHHHH
Q 025876          132 VQELIS  137 (247)
Q Consensus       132 v~~Ll~  137 (247)
                      .+.|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            777765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.85  E-value=6.6e-09  Score=86.58  Aligned_cols=121  Identities=21%  Similarity=0.090  Sum_probs=102.6

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCc-cccccCCCCCcHHHHHHhcCcHH
Q 025876           52 LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD-ACLVADQDGRIPLHLAAMRGRVE  130 (247)
Q Consensus        52 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~  130 (247)
                      +..|+..+.+--++..-..|.++ -..+.+..+.||+|++.|+-++|++++.+++. +.+..+..|+|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            34555666655555566667776 56788899999999999999999999999864 45678899999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876          131 VVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       131 ~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                      ++++|.+.|+.....|..|.||-..|-+.+..+++-+|.....
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            9999999999999999999999999999999999888866544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.83  E-value=5.7e-09  Score=53.21  Aligned_cols=28  Identities=43%  Similarity=0.693  Sum_probs=17.2

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCcc
Q 025876          116 GRIPLHLAAMRGRVEVVQELISANFDSA  143 (247)
Q Consensus       116 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  143 (247)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666665554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.81  E-value=2.1e-08  Score=82.98  Aligned_cols=86  Identities=29%  Similarity=0.433  Sum_probs=48.1

Q ss_pred             HHHHHHhcCCHHHHHHHHh-cCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcH
Q 025876           51 PLHISALLGHLDFTKALLN-HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV  129 (247)
Q Consensus        51 ~L~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  129 (247)
                      |+|+++.....+-+...+. .-.......|..|.||||+|+..|+.+.++.|+..++++ ...|..||+|||-|+.+|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCH
Confidence            4666665554444333222 111112455666666666666666666666666666666 46666666666666666665


Q ss_pred             HHHHHHHH
Q 025876          130 EVVQELIS  137 (247)
Q Consensus       130 ~~v~~Ll~  137 (247)
                      +++..++.
T Consensus       102 q~i~~vlr  109 (560)
T KOG0522|consen  102 QIITEVLR  109 (560)
T ss_pred             HHHHHHHH
Confidence            55544443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.81  E-value=9.2e-09  Score=84.29  Aligned_cols=94  Identities=19%  Similarity=0.182  Sum_probs=82.8

Q ss_pred             cccCCCCcH------HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCC
Q 025876           77 ELDSLKHSP------LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGD  150 (247)
Q Consensus        77 ~~~~~g~t~------l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~  150 (247)
                      .+|.+|.+.      ||.+++.|+.++.--|+..|++....--..|.||||+|++.|+...+++|+-+|+++...|..|+
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            456666554      89999999999888899999999555667899999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCCcceeecccc
Q 025876          151 TVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus       151 t~l~~A~~~~~~~~~~~l~~  170 (247)
                      ||+.+|-..|+-++.+-|.+
T Consensus       202 tP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHH
Confidence            99999999999888876644

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.77  E-value=1.4e-08  Score=53.17  Aligned_cols=31  Identities=35%  Similarity=0.536  Sum_probs=20.9

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCccccc
Q 025876          116 GRIPLHLAAMRGRVEVVQELISANFDSALVK  146 (247)
Q Consensus       116 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  146 (247)
                      |+||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            6666777766666677777766666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.71  E-value=5.8e-08  Score=81.12  Aligned_cols=92  Identities=24%  Similarity=0.275  Sum_probs=70.6

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcc---hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCc
Q 025876           52 LHISALLGHLDFTKALLNHKPEL---AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR  128 (247)
Q Consensus        52 L~~A~~~g~~~~~~~Ll~~~~~~---~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  128 (247)
                      |.-|+....+..+-+||.+|...   ....+.+|+|+||+||+.|++.+.++|+=+|.++ ...|..|+|+|.||-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            56667777777778888877432   1234667788888888888888888888888887 5788888888888888888


Q ss_pred             HHHHHHHHHcCCCccc
Q 025876          129 VEVVQELISANFDSAL  144 (247)
Q Consensus       129 ~~~v~~Ll~~~~~~~~  144 (247)
                      -+|+..|+++|+..+.
T Consensus       707 qec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDEC  722 (749)
T ss_pred             HHHHHHHHHcCCCccc
Confidence            8888888888776544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.6e-08  Score=50.75  Aligned_cols=27  Identities=37%  Similarity=0.680  Sum_probs=15.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcc
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPEL   74 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~   74 (247)
                      |+||||+||+.|+.+++++|++.|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            555555555555555555555555544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=1.1e-07  Score=79.46  Aligned_cols=93  Identities=28%  Similarity=0.250  Sum_probs=79.3

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCcc---ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcC
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDA---CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHL  160 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  160 (247)
                      .-|--|+...++..+-+|+.+|...   ....+..|+|+||+|+..|++.+.++|+.+|+++-..|..|+|+|.+|-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            4566777778888888999887543   1234667899999999999999999999999999999999999999999999


Q ss_pred             Ccceeecccccccccc
Q 025876          161 SLCTQRLPSNYAAWLD  176 (247)
Q Consensus       161 ~~~~~~~l~~~~~~~~  176 (247)
                      ..+++.+|+++|....
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999887543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.63  E-value=1.2e-07  Score=78.70  Aligned_cols=90  Identities=27%  Similarity=0.320  Sum_probs=74.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG   93 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g   93 (247)
                      .++|+++...+.+-+...+..... ......|..|.||||+|+..|+.++++.|+..++++ ..++..|+++||.|+.+|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~-~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS-LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh-ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcC
Confidence            459999998888877765544321 223556777999999999999999999999999998 889999999999999999


Q ss_pred             CHHHHHHHHHcC
Q 025876           94 HVQIVKELLLAN  105 (247)
Q Consensus        94 ~~~~~~~Ll~~~  105 (247)
                      +.+++..++.+.
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            998888877654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.62  E-value=6.5e-08  Score=50.65  Aligned_cols=27  Identities=44%  Similarity=0.698  Sum_probs=13.2

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcc
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPEL   74 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~   74 (247)
                      |.||||+|+..|+.+++++|++.|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            444455555555555555554444444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.45  E-value=1.2e-06  Score=76.64  Aligned_cols=127  Identities=24%  Similarity=0.239  Sum_probs=101.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCch-hhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSL-ILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA   89 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A   89 (247)
                      .+......|+..|+...|+..++.... ..+.+-.|.-|+++|+.|..+.+.++.++|++.+...        ..+|-+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHH
Confidence            345668899999999999999875443 2334556777999999999999999999999987543        3689999


Q ss_pred             HhcCCHHHHHHHHHcCCccc---------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcccc
Q 025876           90 AAEGHVQIVKELLLANKDAC---------LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALV  145 (247)
Q Consensus        90 ~~~g~~~~~~~Ll~~~~~~~---------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  145 (247)
                      +..|.++++++++.+.....         ...-..+-||+++|+..++.||+++|+.+|+.+...
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            99999999999998744321         112234779999999999999999999998877655

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.35  E-value=1.3e-06  Score=63.35  Aligned_cols=70  Identities=16%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             CCCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc
Q 025876            2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE   73 (247)
Q Consensus         2 ~~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~   73 (247)
                      |.+||.+|.+|+|+|+.|+.-|..+.+.||+.+|....  ...|+.+.+++.+|-+.|+.++++.|.+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v--gv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV--GVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccc--cccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            67899999999999999999999999999999994322  55677799999999999999999999886544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.29  E-value=1.3e-06  Score=76.47  Aligned_cols=124  Identities=19%  Similarity=0.117  Sum_probs=99.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCc---chhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPE---LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA  124 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~---~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  124 (247)
                      +.--.-.|++.|+...++..++....   ..+..|.-|++++++|+...+.+++++|+++....       | .+|-+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------g-dALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------G-DALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------c-hHHHHHH
Confidence            44457789999999999998886543   13778999999999999999999999999886544       2 3899999


Q ss_pred             hcCcHHHHHHHHHcCCCc---------c-ccccCCCcHHHHHHhcCCcceeeccccccccccccC
Q 025876          125 MRGRVEVVQELISANFDS---------A-LVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTL  179 (247)
Q Consensus       125 ~~~~~~~v~~Ll~~~~~~---------~-~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~  179 (247)
                      ..|.+++|+.++.+....         + ..-..+-||+..||..+++|++++|++.+.......
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            999999999999853222         1 113357899999999999999999998887665544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=2.4e-06  Score=68.29  Aligned_cols=58  Identities=26%  Similarity=0.403  Sum_probs=52.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL   74 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   74 (247)
                      --|++||+.|+.+.|++|++.|.++   +..|.+..+||.+|+..||.+++++|+++|+--
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV---N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV---NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc---chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            3599999999999999999988877   677888899999999999999999999999754

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.25  E-value=1.5e-06  Score=77.63  Aligned_cols=126  Identities=18%  Similarity=0.100  Sum_probs=90.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhc-CchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQS-DSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL   86 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   86 (247)
                      ....|++.+|.++..+..-.++.+++- +...   ...|.+|...+|+|+..|..-.+....-.+..+ +.+|..|+|||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~---~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai-~i~D~~G~tpL  645 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD---LELDRDGQGVIHFCAALGYEWAFLPISADGVAI-DIRDRNGWTPL  645 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCc---hhhcccCCChhhHhhhcCCceeEEEEeeccccc-ccccCCCCccc
Confidence            445678889999999988888888875 3322   345566888888866555544444444566665 77889999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCcccccc-----CCCCCcHHHHHHhcCcHHHHHHHHH
Q 025876           87 HLAAAEGHVQIVKELLLANKDACLVA-----DQDGRIPLHLAAMRGRVEVVQELIS  137 (247)
Q Consensus        87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~-----~~~g~t~L~~A~~~~~~~~v~~Ll~  137 (247)
                      |+|+..|+..++..|+..++......     ...|.|+-..|...|+..+.-+|-+
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999999888888887766543222     3357788888888888777777655

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.23  E-value=1.9e-06  Score=77.02  Aligned_cols=85  Identities=26%  Similarity=0.302  Sum_probs=67.1

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhc
Q 025876           80 SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH  159 (247)
Q Consensus        80 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~  159 (247)
                      ..|.|++|.|+..|..-+.++|++.|+++ +..+..|++|+|.+...|+...+..|+++|++.+..+..|.+|+++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            34668888888888888888888888886 77888888888888888888888888888888888888888888888666


Q ss_pred             CCccee
Q 025876          160 LSLCTQ  165 (247)
Q Consensus       160 ~~~~~~  165 (247)
                      .+.+++
T Consensus       733 ~~~d~~  738 (785)
T KOG0521|consen  733 ANADIV  738 (785)
T ss_pred             ccccHH
Confidence            444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.15  E-value=1.5e-06  Score=77.74  Aligned_cols=87  Identities=21%  Similarity=0.162  Sum_probs=70.5

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc-cccccCCccchhhHHHhhc
Q 025876          114 QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA-WLDWTLSICYPKHLTIETR  192 (247)
Q Consensus       114 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~~  192 (247)
                      ..|.|+||.|+.++..-++++|++.|++++..|..|.||+|.+...|+...+.+++..++ ....+..|.+|+++|.+..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            457889999999999999999999999999999999999999999999888886665554 5566668899999998774


Q ss_pred             ccceeecc
Q 025876          193 GAVAILMM  200 (247)
Q Consensus       193 ~~~~~~~l  200 (247)
                      ......++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            44444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.14  E-value=7.5e-06  Score=65.58  Aligned_cols=75  Identities=27%  Similarity=0.289  Sum_probs=63.5

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhc
Q 025876           49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR  126 (247)
Q Consensus        49 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  126 (247)
                      .--|..||+.|..+.+++|++.|.++ |..|....+||.+|+-.||..++++|++.|+.. ......|..+ |+++.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhh
Confidence            44589999999999999999999998 999999999999999999999999999999987 5555566543 444433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.12  E-value=7.9e-06  Score=59.36  Aligned_cols=67  Identities=18%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCcc
Q 025876           42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA  108 (247)
Q Consensus        42 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  108 (247)
                      +..|..|+|+++.|++.|+.+.+.+|+.+|.......|..|.+++.+|-+.|+.++++.|.+...+.
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            5567778888888888888888888888884434777888888888888888888888887765544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.04  E-value=3.4e-06  Score=75.48  Aligned_cols=124  Identities=23%  Similarity=0.152  Sum_probs=94.8

Q ss_pred             ccCCCcHHHHHHhcCCHHHHHHHHhc-CCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 025876           45 TSLRETPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA  123 (247)
Q Consensus        45 ~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  123 (247)
                      .-.|.+.+|+++..++.-.++.+++- +... ...|..|.-.+|. |..++.+..-+++.......+..|..||||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            34489999999999999999999985 4443 5567777777888 5556667777666654444478999999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCcc------ccccCCCcHHHHHHhcCCcceeecccc
Q 025876          124 AMRGRVEVVQELISANFDSA------LVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus       124 ~~~~~~~~v~~Ll~~~~~~~------~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      ...|+..++..|...|++..      .....|.|+-..|-..|+..+..+|.+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999999999997554433      234468899999988888777666633

>smart00248 ANK ankyrin repeats

Probab=97.08  E-value=0.0013  Score=32.01  Aligned_cols=25  Identities=52%  Similarity=0.776  Sum_probs=12.2

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCC
Q 025876          116 GRIPLHLAAMRGRVEVVQELISANF  140 (247)
Q Consensus       116 g~t~L~~A~~~~~~~~v~~Ll~~~~  140 (247)
                      |.||+|+|+..++.+++++|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.91  E-value=0.0019  Score=31.34  Aligned_cols=25  Identities=40%  Similarity=0.622  Sum_probs=13.2

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKP   72 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~   72 (247)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4455555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.88  E-value=0.0015  Score=54.62  Aligned_cols=63  Identities=19%  Similarity=0.115  Sum_probs=47.1

Q ss_pred             HHHHHHHHHcCCccc-----cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHH
Q 025876           95 VQIVKELLLANKDAC-----LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA  157 (247)
Q Consensus        95 ~~~~~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~  157 (247)
                      ...+++|...+....     ...+..-.|+||+|+..|..+||.+||+.|+|+..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            445666666655441     112344668899999999999999999989999999999999988775

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.58  E-value=0.0032  Score=52.67  Aligned_cols=63  Identities=33%  Similarity=0.317  Sum_probs=50.4

Q ss_pred             HHHHHHHHhcCCcch-----hcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876           61 LDFTKALLNHKPELA-----KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA  124 (247)
Q Consensus        61 ~~~~~~Ll~~~~~~~-----~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  124 (247)
                      .+.+++|.+++....     ...+.-..|+||+|+..|..+++.+|+..++++ ...|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            567778877765441     123444568999999999999999999999888 689999999999987

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.73  E-value=0.15  Score=38.74  Aligned_cols=115  Identities=12%  Similarity=0.059  Sum_probs=75.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCC----cchhcccCCCCcHHHHH
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKP----ELAKELDSLKHSPLHLA   89 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~----~~~~~~~~~g~t~l~~A   89 (247)
                      ..|-.|+..-+.+.+..++.....          -.++|-++...+..+++.+|+..-.    ++...  ..+.--+-++
T Consensus       155 isledAV~AsN~~~i~~~VtdKkd----------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~  222 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKD----------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYL  222 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHH----------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHH
Confidence            446677777777777777654432          3467888888888889888887542    22111  1122234444


Q ss_pred             Hhc--CCHHHHHHHHHcCCcccc---ccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 025876           90 AAE--GHVQIVKELLLANKDACL---VADQDGRIPLHLAAMRGRVEVVQELISANF  140 (247)
Q Consensus        90 ~~~--g~~~~~~~Ll~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  140 (247)
                      .+.  ....+++.++..|-..++   ..-.+|.|.|.-|+++++.+++.+|+++|+
T Consensus       223 LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  223 LSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            443  245678888887754433   234578888888888888888888888876

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.46  E-value=0.13  Score=39.07  Aligned_cols=115  Identities=15%  Similarity=0.128  Sum_probs=78.6

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcC----CccccccCCCCCcHHHHHH--
Q 025876           51 PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLAN----KDACLVADQDGRIPLHLAA--  124 (247)
Q Consensus        51 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~----~~~~~~~~~~g~t~L~~A~--  124 (247)
                      .|--|+..-+.+.+.-++....+        -.+++.+|...+..+++-+|+..-    .++.....  +.--+-++.  
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhh
Confidence            35666666666666666544332        247888999888889999888642    22211111  222344443  


Q ss_pred             hcCcHHHHHHHHHcC-CCcccc---ccCCCcHHHHHHhcCCcceeeccccccccc
Q 025876          125 MRGRVEVVQELISAN-FDSALV---KFHGDTVLHFKAEHLSLCTQRLPSNYAAWL  175 (247)
Q Consensus       125 ~~~~~~~v~~Ll~~~-~~~~~~---~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  175 (247)
                      ....+.+.++++.+| +++|..   -+.|.|-|.-|++.++.+++.+|+++|+..
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            334678899999887 566544   667999999999999999999999998854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.13  E-value=0.63  Score=34.31  Aligned_cols=138  Identities=14%  Similarity=-0.015  Sum_probs=86.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      .-.|.-|+..+...+++++-.......      ...++.+-.||+..+.++|+++-+.-.-      .+-.+.+.+|...
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~~------~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~  114 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENER------YLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAK  114 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcch------hHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhc
Confidence            445777888999999988766443210      1267888999999999999998443221      1123566778877


Q ss_pred             CCHHHHH----HHHHcCCccccccCC--CCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceee
Q 025876           93 GHVQIVK----ELLLANKDACLVADQ--DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQR  166 (247)
Q Consensus        93 g~~~~~~----~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  166 (247)
                      .+.+...    +++.+.... ...|.  --..-|..|+..|....+.-.+++|.+++.      +.|..|+..++-.+..
T Consensus       115 kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~  187 (192)
T PF03158_consen  115 KDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILD  187 (192)
T ss_pred             cchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHH
Confidence            7766422    122221110 00000  001235678888888888888888877754      6888888888777766


Q ss_pred             ccc
Q 025876          167 LPS  169 (247)
Q Consensus       167 ~l~  169 (247)
                      .++
T Consensus       188 yfi  190 (192)
T PF03158_consen  188 YFI  190 (192)
T ss_pred             Hhh
Confidence            544

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.74  E-value=0.13  Score=32.22  Aligned_cols=47  Identities=13%  Similarity=0.149  Sum_probs=26.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhc
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH   70 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   70 (247)
                      ..+..|+..|+.++++.+++.+. +         ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~---------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-P---------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-c---------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            44566666666666666654331 1         12346666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.25  E-value=0.35  Score=30.25  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=26.9

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHc
Q 025876           50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA  104 (247)
Q Consensus        50 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~  104 (247)
                      ..+..|+.+|+.++++.+++.+...        ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456666666666666666544211        2356666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-14
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-12
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-08
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-06
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		9e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-05
1uoh_A	226	Human Gankyrin Length = 226		5e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		9e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           +L EA+  G+   +  L+++ + +    +  S   TPLH +A  GH +  K L++   ++
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 75  AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVA-DQDGRIPLHLAAMRGRVEVVQ 133
             + DS   +PLH AA EGH +IVK  LL +K A + A D DGR PLH AA  G  E+V+
Sbjct: 64  NAK-DSDGRTPLHYAAKEGHKEIVK--LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 134 ELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
            LIS   D       G T L    EH +    +L      WL+
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           +L EA+  G+   +  L+++ + +    +  S  +TPLH++A  GH +  K LL+   + 
Sbjct: 7   RLIEAAENGNKDRVKDLLENGADV---NASDSDGKTPLHLAAENGHKEVVKLLLSQGAD- 62
Query: 75  AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
               DS   +PLHLAA  GH ++VK LL    D     D DG+ PLHLAA  G  EVV+ 
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVVKL 121
Query: 135 LISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
           L+S   D       G T L    EH +    +L      WL+
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +  K        TPLH++A  GHL+  + LL  
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 69
Query: 71  KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
             ++ AK+ D   ++PLHLAA EGH++IV+ LL A  D     D+DG  PLHLAA  G +
Sbjct: 70  GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 126
Query: 130 EVVQELISANFD-SALVKF 147
           E+V+ L+ A  D +A  KF
Sbjct: 127 EIVEVLLKAGADVNAQDKF 145

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +  K        TPLH++A  GHL+  + LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 57
Query: 71  KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
             ++ AK+ D   ++PLHLAA EGH++IV+ LL A  D     D+DG  PLHLAA  G +
Sbjct: 58  GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 114
Query: 130 EVVQELISANFD-SALVKF 147
           E+V+ L+ A  D +A  KF
Sbjct: 115 EIVEVLLKAGADVNAQDKF 133

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           TPLH++A  GHL+  K LL    ++  + D    +PLHLAA  GH+++VK LL A  D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPS 169
              D++GR PLHLAA  G +EVV+ L+ A  D      +G T LH  A +  L   +L  
Sbjct: 63  -AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 170 NYAAW 174
              A+
Sbjct: 122 EAGAY 126

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +  K        TPLH++A  GHL+  + LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 57
Query: 71  KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
             ++ AK+ D   ++PLHLAA EGH++IV+ LL A  D     D+DG  PLHLAA  G +
Sbjct: 58  GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 114
Query: 130 EVVQELISANFD-SALVKF 147
           E+V+ L+ A  D +A  KF
Sbjct: 115 EIVEVLLKAGADVNAQDKF 133

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +  +   TPLH++A  GHL+  + LL H
Sbjct: 13  DLGRKLLEAARAGQDDEVRILMANGADV---NAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++    D   ++PLHLAA  GH++IV E+LL N       D DG  PLHLAA  G +E
Sbjct: 70  GADVDAS-DVFGYTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKHGADVNAQDKF 145

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D+   +PLHLAA  GH++IV E+LL +      +D  G  PLHLAA  G +E+V+ L+  
Sbjct: 44  DNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 139 NFDSALVKFHGDTVLHFKAE 158
             D   +   G T LH  A+
Sbjct: 103 GADVNAMDSDGMTPLHLAAK 122

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           +L EA+  G+   +  L+++ +      +  S   TPLH +A  GH +  K LL+ K   
Sbjct: 7   RLIEAAENGNKDRVKDLLENGA---DPNASDSDGRTPLHYAAENGHKEIVKLLLS-KGAD 62
Query: 75  AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
               DS   +PLH AA  GH +IVK LL    D     D DGR PLH AA  G  E+V+ 
Sbjct: 63  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKL 121
Query: 135 LISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
           L+S   D       G T L    EH +    +L      WL+
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +   +  TPLH++A  GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADV---NAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++    D+L  +PLHLAA  GH++IV E+LL N       D +G  PLHLAA RG +E
Sbjct: 70  GADV-NAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D +  +PLHLAA  GH++IV E+LL N       D  G  PLHLAA  G +E+V+ L+  
Sbjct: 44  DVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 139 NFDSALVKFHGDTVLHFKAE--HLSLC 163
             D      +G T LH  A   HL + 
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIV 129

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +      T    TPLH++A  GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV-NARDFTGW--TPLHLAAHFGHLEIVEVLLKN 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++  + DSL  +PLHLAA  GH++IV E+LL N      +D  G  PLHLAA RG +E
Sbjct: 70  GADVNAK-DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKNGADVNAQDKF 145

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           +PLHLAA  GH++IV E+LL N       D  G  PLHLAA RG +E+V+ L+    D  
Sbjct: 49  TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 144 LVKFHGDTVLHFKAE--HLSLC 163
               HG T LH  A+  HL + 
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIV 129

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           +L EA+  G+   +  L+++ + +    +  S   TPLH +A  GH +  K L++   ++
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 75  AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
             + DS   +PLH AA  GH ++VK LL++        D DGR PLH AA  G  EVV+ 
Sbjct: 64  NAK-DSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 135 LISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
           LIS   D       G T L    EH +    +L      WL+
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +   T  + L  TPLH++A  GHL+  + LL H
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV-NATDASGL--TPLHLAATYGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++   +D +  +PLHLAA  GH++IV+ LL    D   V D  G  PLHLAA+ G +E
Sbjct: 70  GADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLE 127
Query: 131 VVQELISANFD 141
           +V+ L+    D
Sbjct: 128 IVEVLLKHGAD 138

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           +PLHLAA  GH++IV+ LL    D   + D  G  PLHLAA+ G +E+V+ L+    D  
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 144 LVKFHGDTVLHFKA 157
            V   GDT LH  A
Sbjct: 108 AVDTWGDTPLHLAA 121

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +   +  TPLH++A  GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV---NASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++  + DSL  +PLHLAA  GH+++V E+LL N       D +G  PLHLAA  G +E
Sbjct: 70  GADVNAD-DSLGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKHGADVNAQDKF 145

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D +  +PLHLAA  GH++IV E+LL N       D  G  PLHLAA RG +EVV+ L+  
Sbjct: 44  DHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 139 NFDSALVKFHGDTVLHFKAE--HLSLC 163
             D      +G T LH  A   HL + 
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIV 129

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +     +TPLH++A+ GHL+  + LL H
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV---NAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++    D +  +PLHLAA  GH++IV E+LL N       D  G  PLHLAA  G +E
Sbjct: 70  GADV-NAADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 55  SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ 114
           +A  G  D  + L+ +  ++  E DS K +PLHLAA +GH++IV E+LL +      AD+
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIV-EVLLKHGADVNAADK 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAE--HLSLC 163
            G  PLHLAA+ G +E+V+ L+    D      +G T LH  A+  HL + 
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA--E 158
           +L+AN       D  G+ PLHLAA++G +E+V+ L+    D       GDT LH  A   
Sbjct: 32  ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYG 91
Query: 159 HLSLCTQRLPSNYAAWLDWTLSICY-PKHLTIETRGAVAILMMPSVGGITFFQESFAERS 217
           HL +    L +   A ++ T +  + P HL  +      + ++   G     Q+ F + +
Sbjct: 92  HLEIVEVLLKN--GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 218 L 218
Sbjct: 150 F 150

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           TPLH++A  GHL+  K LL    ++  + D    +PLHLAA  GH+++VK LL A  D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISA 138
              D++GR PLHLAA  G +EVV+ L+ A
Sbjct: 63  -AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           +PLHLAA  GH+++VK LL A  D     D++GR PLHLAA  G +EVV+ L+ A  D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 144 LVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW 174
               +G T LH  A +  L   +L     A+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +   T  + L  TPLH++A  GHL+  + LL H
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV-NATDASGL--TPLHLAATYGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++   +D    +PLHLAA  GH++IV+ LL    D   V D  G  PLHLAA+ G +E
Sbjct: 70  GADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLE 127
Query: 131 VVQELISANFD 141
           +V+ L+    D
Sbjct: 128 IVEVLLKHGAD 138

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           +PLHLAA  GH++IV+ LL    D   + D  G  PLHLAA+ G +E+V+ L+    D  
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 144 LVKFHGDTVLHFKA 157
            V   GDT LH  A
Sbjct: 108 AVDTWGDTPLHLAA 121

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +   L  TPLH++A  GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV---NATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++    D+   +PLHLAA  GH++IV E+LL +       D +G  PLHLAA  G +E
Sbjct: 70  GADV-NAWDNYGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D L H+PLHLAA  GH++IV+ LL    D     D  G  PLHLAA  G +E+V+ L+  
Sbjct: 44  DWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 139 NFDSALVKFHGDTVLHFKA 157
             D     + G T LH  A
Sbjct: 103 GADVNAKDYEGFTPLHLAA 121

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
           KL EA+  G    +  LM + + +    +  +   TPLH++A  GHL+  + LL +  ++
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV---NATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 75  -AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
            A +L  +  +PLHLAAA GH++IV E+LL +       D DG  PLHLAA  G +E+V+
Sbjct: 74  NASDLTGI--TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 134 ELISANFD-SALVKF 147
            L+    D +A  KF
Sbjct: 131 VLLKHGADVNAQDKF 145

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D+  ++PLHLAA+ GH++IV E+LL N      +D  G  PLHLAA  G +E+V+ L+  
Sbjct: 44  DNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 139 NFDSALVKFHGDTVLHFKAEH 159
             D       G T LH  A++
Sbjct: 103 GADVNAYDNDGHTPLHLAAKY 123

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +       S   TPLH++A +GH +  + LL H
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS---TPLHLAAWIGHPEIVEVLLKH 69
Query: 71  KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
             ++ A++ D    +PLHLAA  GH++IV+ LL    D     D  G  PLHLAA RG +
Sbjct: 70  GADVNARDTDGW--TPLHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHL 126
Query: 130 EVVQELISANFD-SALVKF 147
           E+V+ L+    D +A  KF
Sbjct: 127 EIVEVLLKHGADVNAQDKF 145

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D    +PLHLAA  GH +IV E+LL +       D DG  PLHLAA  G +E+V+ L+  
Sbjct: 44  DDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 139 NFDSALVKFHGDTVLHFKAE--HLSLC 163
             D      +G T LH  A+  HL + 
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIV 129

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLR-ETPLHISALLGHLDFTKALLNHKPEL 74
           L+ AS  G +  +  L+Q  +      ++++++ ETPLH++A  GH +  K LL +K ++
Sbjct: 18  LHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 75  -AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
            AK  D    +PLH AA  GH  +VK LLL N     +A   G  PLH+AA  G VE V 
Sbjct: 74  NAKAKDD--QTPLHCAARIGHTNMVK-LLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 134 ELISANFDSALVKFHGDTVLHFKAEH 159
            L+      A +   G T LH  A++
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKY 156

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +  +  +TPLH++A +GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV---NAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++   LD    +PLHLAA  GH++IV+ LL    D     D  G  PLHLAA  G +E
Sbjct: 70  GADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHL 160
           +L+AN       D  G  PLHLAA  G +E+V+ L+    D   + F G T LH  A+  
Sbjct: 32  ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 161 SLCTQRLPSNYAAWLDWTLSI-CYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSL 218
            L    +   Y A ++   +I   P HL  +T     + ++   G     Q+ F + + 
Sbjct: 92  HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  L+ + + +    ++ +   TPLH++A+ GHL+  + LL H
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADV---NAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++    D    +PLHLAA  GH++IV+ LL    D     D  G  PLHLAA  G +E
Sbjct: 70  GADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLE 127
Query: 131 VVQELISANFD 141
           +V+ L+    D
Sbjct: 128 IVEVLLKYGAD 138

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 78  LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           +D+   +PLHLAA  GH++IV E+LL +      AD  G  PLHLAAM G +E+V+ L+ 
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 138 ANFDSALVKFHGDTVLHFKAE 158
              D       G T LH  A+
Sbjct: 102 YGADVNAFDMTGSTPLHLAAD 122

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +  +   TPLH++A  GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++   +D    +PL LAA  GH++IV E+LL N       D +G  PLHLAAM G +E
Sbjct: 70  GADV-NAVDHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 131 VVQELISANFD 141
           +V+ L+    D
Sbjct: 128 IVEVLLKNGAD 138

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 55  SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ 114
           +A  G  D  + L+ +  ++  E D+   +PLHLAA  GH++IV E+LL N       D 
Sbjct: 21  AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDH 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
            G  PL LAA+ G +E+V+ L+    D       G T LH  A
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 10  EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69
           +D   KL EA+  G    +  LM + + +   T    L  TPLH++A  G L+  + LL 
Sbjct: 4   QDLGKKLLEAAAAGQDDEVRILMANGADV-NATDDNGL--TPLHLAAANGQLEIVEVLLK 60
Query: 70  HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
           +  ++    DS   +PLHLAA +GH++IV+ LL    D     D+ G  PLHLAA+ G++
Sbjct: 61  NGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQL 118
Query: 130 EVVQELISANFD 141
           E+V+ L+    D
Sbjct: 119 EIVEVLLKHGAD 130

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           +PLHLAAA G ++IV E+LL N      +D  G  PLHLAA  G +E+V+ L+    D  
Sbjct: 41  TPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 144 LVKFHGDTVLHFKA 157
                G T LH  A
Sbjct: 100 AYDRAGWTPLHLAA 113

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + +      +      TPLH++A +GHL+  + LL +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA---DANAYDHYGRTPLHMAAAVGHLEIVEVLLRN 57
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++   +D+   +PLHLAA+ GH++IV+ LL    D     D  G  PL+LAA  G +E
Sbjct: 58  GADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLE 115
Query: 131 VVQELISANFD 141
           +V+ L+    D
Sbjct: 116 IVEVLLKHGAD 126

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 75  AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
           A   D    +PLH+AAA GH++IV E+LL N       D +G  PLHLAA  G +E+V+ 
Sbjct: 28  ANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 135 LISANFDSALVKFHGDTVLHFKA 157
           L+    D       G T L+  A
Sbjct: 87  LLKYGADVNAKDATGITPLYLAA 109

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +      TPLH+    GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV---NANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
             ++    D    +PLHLAA  GH++IV+ LL    D   + D  G  PLHLAA  G +E
Sbjct: 70  AADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
           +V+ L+    D +A  KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           +PLHL    GH++I++ LL    D    +D+ G  PLHLAA RG +E+V+ L+    D  
Sbjct: 49  TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 144 LVKFHGDTVLHFKAE--HLSLC 163
            + + G T LH  AE  HL + 
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIV 129

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 10  EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69
           ED    L EA+    + ++  L+++ +L+  K +  S   T LH++A  GH +  + LL+
Sbjct: 42  EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS---TCLHLAAKKGHYEVVQYLLS 98
Query: 70  HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
           +        D    +P+  A    HV +VK LLL+      + D +  I LH AA  G V
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEYKHVDLVK-LLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 130 EVVQELISANFDSALVKFHGDTVLHFKA 157
           ++ + L++A  D   V  HGD+ LH  A
Sbjct: 158 DIAEILLAAKCDLHAVNIHGDSPLHIAA 185

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 82  KHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
           K SPLH AA  GHV I   L+   AN D C    +D R PL  AA    +E V+ LI A 
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKA- 66
Query: 140 FDSALV---KFHGDTVLHFKAE 158
              ALV      G T LH  A+
Sbjct: 67  --GALVDPKDAEGSTCLHLAAK 86

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
            TPLH +A  GH +  K LL+   ++ A+  D   ++PLHLAA  GH +IVK LLLA   
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIVK-LLLAKGA 66
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
                 +DG  P HLA   G  E+V+ L +   D
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    +L     TPLH++A LGHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV---NALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
             ++  E D+   +PLHLAA  GH++IV E+LL +       D+ G+    ++   G   
Sbjct: 70  GADVNAE-DNFGITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
             E++Q+L
Sbjct: 128 LAEILQKL 135

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 78  LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           LD    +PLHLAA  GH++IV+ LL    D     D  G  PLHLAA+RG +E+V+ L+ 
Sbjct: 43  LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 138 ANFD-SALVKF 147
              D +A  KF
Sbjct: 102 HGADVNAQDKF 112

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    ++     TPLH++A  GHL+  + LL H
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
             ++    DS   +PLHLAA  GH++IV+ LL    D     D+ G+    ++   G   
Sbjct: 70  GADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
             E++Q+L
Sbjct: 128 LAEILQKL 135

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 78  LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           +D    +PLHLAA  GH++IV E+LL +      +D  GR PLHLAA  G +E+V+ L+ 
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD-SALVKF 147
              D +A  KF
Sbjct: 102 YGADVNAQDKF 112

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 47  LRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA 104
           L  TPLH +   GHL     L+ +   P L   +D    S +HLAA  GH  IV  L+  
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 105 NKDACLVADQDGRIPLHLAAMRGR-VEVVQELISANFDSALV-KFHGDTVLHF 155
            +D  ++ DQ+G  PL  AA R   V+  + L++ N    L  K+H +T LH+
Sbjct: 132 GQDVDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
           + ++  +L EA+  G V ++  L    S+  R   +   + TPLH +A    +   + LL
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 69  NHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
            H  ++ AK+   L   PLH A + GH ++  ELL+ +     VAD     PLH AA +G
Sbjct: 65  QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 128 RVEVVQELISANFDSALVKFHGDTVL 153
           + E+ + L+    D       G+T L
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
           + ++  +L EA+  G V ++  L    S+  R   +   + TPLH +A    +   + LL
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 69  NHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
            H  ++ AK+   L   PLH A + GH ++  ELL+ +     VAD     PLH AA +G
Sbjct: 63  QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 128 RVEVVQELISANFDSALVKFHGDTVL 153
           + E+ + L+    D       G+T L
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
           + ++  +L EA+  G V ++  L    S+  R   +   + TPLH +A    +   + LL
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 66
Query: 69  NHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
            H  ++ AK+   L   PLH A + GH ++  ELL+ +     VAD     PLH AA +G
Sbjct: 67  QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 128 RVEVVQELISANFDSALVKFHGDTVL 153
           + E+ + L+    D       G+T L
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 48  RETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
           + TPLH++A    +   + LL H  ++ AK+   L   PLH A + GH ++  ELLL + 
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL--VPLHNACSYGHYEVT-ELLLKH- 113
Query: 107 DACLVA-DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVL 153
            AC+ A D     PLH AA + RVEV   L+S   D  LV  HG + +
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    ++     TPLH++A  GHL+  + LL H
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
             ++    D    +PLHLAA  GH++IV+ LL    D     D+ G+    ++   G   
Sbjct: 70  GADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
             E++Q+L
Sbjct: 128 LAEILQKL 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 78  LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           +D    +PLHLAA  GH++IV E+LL +       D  GR PLHLAA  G +E+V+ L+ 
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD-SALVKF 147
              D +A  KF
Sbjct: 102 YGADVNAQDKF 112

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +    ++     TPLH++A  GHL+  + LL H
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
             ++    D    +PLHLAA  GH++IV+ LL    D     D+ G+    ++   G   
Sbjct: 70  GADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
             E++Q+L
Sbjct: 128 LAEILQKL 135

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 78  LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           +D    +PLHLAA  GH++IV E+LL +      +D  GR PLHLAA  G +E+V+ L+ 
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD-SALVKF 147
              D +A  KF
Sbjct: 102 YGADVNAQDKF 112

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           ++EA++ G   SL  L+     +     +T+   +PLH + L GHL   K LL H  ++ 
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV- 118
Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
             + +  H+PL  A   G    V   LL    A +  + D   P+H AA RG VE V  L
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVN--LLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176
Query: 136 IS--ANFDSALVKFHGDTVLHFKAEHLS-LCTQRL 167
           I+   N D  +   H  T L+   E+    C ++L
Sbjct: 177 IAYGGNIDHKI--SHLGTPLYLACENQQRACVKKL 209

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           ++EA++ G   SL  L+     +     +T+   +PLH + L GHL   K LL H  ++ 
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV- 62
Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
             + +  H+PL  A   G    V   LL    A +  + D   P+H AA RG VE V  L
Sbjct: 63  NGVTADWHTPLFNACVSGSWDCVN--LLLQHGASVQPESDLASPIHEAARRGHVECVNSL 120
Query: 136 IS--ANFDSALVKFHGDTVLHFKAEHLS-LCTQRL 167
           I+   N D  +   H  T L+   E+    C ++L
Sbjct: 121 IAYGGNIDHKIS--HLGTPLYLACENQQRACVKKL 153

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           +PLH++AL G  D    LL H    A   ++ +  PLHLA  +GH Q+VK LL +N    
Sbjct: 88  SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP- 145
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
              D  G  PL  A   G  E+V  L+            G+T LH
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D   H+PLHLAA  GH++IV E+LL N          GR PLHLAA    +E+V+ L+  
Sbjct: 44  DYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 139 NFD-SALVKF 147
             D +A  KF
Sbjct: 103 GADVNAQDKF 112

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 55  SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ 114
           +A  G  D  + L+ +  ++  E D +  +PLHLAA   H++IV E+LL N       D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIV-EVLLKNGADVNAIDA 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFD-SALVKF 147
            G  PLHL AM G +E+V+ L+    D +A  KF
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF 112

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           +PLH +   G     + L+     +   ++    +PLHLAA+ GH  IV++LL    D  
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDT-----------VLHFKAE 158
            V ++ G +PLH A   G+ +V ++L++     ++   +G+            +L  +AE
Sbjct: 100 AV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158
Query: 159 HLSLCTQRLPSNYAAW 174
            +     R+P     W
Sbjct: 159 KMGQNLNRIPYKDTFW 174

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           +PLH +   G     + L+     +   ++    +PLHLAA+ GH  IV++LL    D  
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDT-----------VLHFKAE 158
            V ++ G +PLH A   G+ +V ++L++     ++   +G+            +L  +AE
Sbjct: 95  AV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 153
Query: 159 HLSLCTQRLPSNYAAW 174
            +     R+P     W
Sbjct: 154 KMGQNLNRIPYKDTFW 169

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D   ++PLHLAA   H++IV E+LL +       D DG  PLHLAA+ G +E+V+ L+  
Sbjct: 44  DRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 139 NFD-SALVKF 147
             D +A  KF
Sbjct: 103 GADVNAQDKF 112

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + +      +   L  +PLH++A  GH   T+ LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLL-- 54
Query: 71  KPELAKELDS-LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
           +  ++++  + +  +PLH+AA+EGH  IV E+LL +       D      LH A      
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIV-EVLLKHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 130 EVVQELISANFD 141
           EVV+ LI    D
Sbjct: 114 EVVELLIKYGAD 125

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 56  ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD 115
           A  G L+  K  +     LA   D    + LH A + GH +IV+ LL   +    V D+D
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 71
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
             G  PLH+AA  GR E+V+ L+        V  +G T LH+ A
Sbjct: 72  DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 56  ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD 115
           A  G LD  K  +     LA   D    + LH A + GH +IV+ LL   +    V D+D
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
             G  PLH+AA  GR E+V+ L+        V  +G T LH+ A
Sbjct: 71  DAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 56  ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD 115
           A  G L+  K  +     LA   D    + LH A + GH +IV+ LL   +    V D+D
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
             G  PLH+AA  GR E+V+ L+        V  +G T LH+ A
Sbjct: 71  DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 23  GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82
           G +  L   + +D  +  +T   S   T LH +   GH +  + LL     +  + D   
Sbjct: 17  GKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAG 73
Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
            SPLH+AA+ G  +IVK LL+       V +Q+G  PLH AA + R E+   L+    + 
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 143 ALVKFHGDTVLHFKA 157
                +  T +H  A
Sbjct: 133 DAKDHYDATAMHRAA 147

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           L+ AS++G + S+  L+Q+ S    K        TPLH +   GHL   + LL HK  L 
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVVELLLQHK-ALV 69
Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELL 102
                   SPLH AA  GHV IVK LL
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLL 96

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           ET LHI+++ G +   + LL +  +   + D    +PLH A   GH+++V ELLL +K  
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVV-ELLLQHKAL 68
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG 149
                     PLH AA  G V++V+ L+S       V   G
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           D   KL EA+  G    +  LM + + +  K        TPL+++   GHL+  + LL +
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL---TPLYLATAHGHLEIVEVLLKN 69
Query: 71  KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
             ++   +D++  +PLHLAA  GH++I  E+LL +       D+ G+    ++   G   
Sbjct: 70  GADV-NAVDAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDISIGNGNED 127
Query: 129 -VEVVQEL 135
             E++Q+L
Sbjct: 128 LAEILQKL 135

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           D    +PL+LA A GH++IV E+LL N       D  G  PLHLAA  G +E+ + L+  
Sbjct: 44  DEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 139 NFD 141
             D
Sbjct: 103 GAD 105

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 27  SLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86
           +L  L Q  S  ++  S TS    P+H +A  G LD  K L+ H  ++   LDS    P+
Sbjct: 59  ALELLKQGASPNVQDASGTS----PVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPI 113
Query: 87  HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
           HLA  EGH  +V    LA +      D  G  PL LA  RG
Sbjct: 114 HLAIREGHSSVVS--FLAPESDLHHRDASGLTPLELARQRG 152

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50  TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
           TP HI+  +G+L+  K+L +   KP+L K + +   + LHLA  +   + V + L+ N  
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
           +  + D+  +IPLH AA  G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50  TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
           TP HI+  +G+L+  K+L +   KP+L K + +   + LHLA  +   + V + L+ N  
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
           +  + D+  +IPLH AA  G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 27  SLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86
           +L  L Q  S  ++  S TS    P+H +A  G LD  K L+ H  ++   LDS    P+
Sbjct: 57  ALELLKQGASPNVQDASGTS----PVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPI 111
Query: 87  HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
           HLA  EGH  +V    LA +      D  G  PL LA  RG
Sbjct: 112 HLAIREGHSSVVS--FLAPESDLHHRDASGLTPLELARQRG 150

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50  TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
           TP HI+  +G+L+  K+L +   KP+L K + +   + LHLA  +   + V + L+ N  
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
           +  + D+  +IPLH AA  G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 45  TSLRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
            +L++TPLH++ +    +  +ALL     PEL    D   ++PLHLA  +G +  V  L 
Sbjct: 39  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLT 95
Query: 103 LANKDACL-----VADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFK 156
            +     L       + +G   LHLA++ G + +V+ L+S   D +A    +G T LH  
Sbjct: 96  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 155
Query: 157 AE 158
            +
Sbjct: 156 VD 157

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 46  SLRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLL 103
           +L++TPLH++ +    +  +ALL     PEL    D   ++PLHLA  +G +  V  L  
Sbjct: 43  NLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 104 ANKDACL-----VADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFKA 157
           +     L       + +G   LHLA++ G + +V+ L+S   D +A    +G T LH   
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
Query: 158 E 158
           +
Sbjct: 160 D 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-18
2etb_A	256	Transient receptor potential cation channel subfam	3e-17
2etb_A	256	Transient receptor potential cation channel subfam	6e-13
2etb_A	256	Transient receptor potential cation channel subfam	3e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	6e-18
2rfa_A	232	Transient receptor potential cation channel subfa	2e-17
2rfa_A	232	Transient receptor potential cation channel subfa	3e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	4e-16
2pnn_A	273	Transient receptor potential cation channel subfa	1e-10
2pnn_A	273	Transient receptor potential cation channel subfa	8e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 2e-23
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
             +H  A  G LD  K  L     L  + D    +PL  A+A G ++ V+ LL   A+  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                 ++    L LA+  G  ++V  L+  + D  +  ++G T L +    
Sbjct: 64  I---LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.5 bits (218), Expect = 9e-22
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
           TPL  ++  G ++  + LL    +    L   + S L LA+  G+  IV  LL    + +
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDIN 96

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                D +G  PL  A     V+ V+ L++   D       G T +      
Sbjct: 97  I---YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.8 bits (211), Expect = 1e-20
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           E+ L +++  G+ D    LL    ++    D    +PL  A    HV+ V+ LL   A+ 
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
                    G  P+ LA   G  +V Q + + 
Sbjct: 129 TT---EADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 116 GRIPLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFKAEH 159
             + +H  A +G ++ ++E +    +        G T L + +  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF 46

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.4 bits (223), Expect = 2e-22
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
             +      G+    +  L++      + D    SPLH A  EG   +V+ L++  A  +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                ++    PLHLAA  G  ++VQ+L+    D   V  HG+  LH+    
Sbjct: 67  V---MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW 115

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 85.9 bits (214), Expect = 5e-21
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            +PLH +   G     + L+     +   ++    +PLHLAA+ GH  IV++LL   A+ 
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEHLSLCT 164
           +A    ++ G +PLH A   G+ +V ++L++  A         +G+  +      L    
Sbjct: 99  NA---VNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC--NKYGEMPVDKAKAPLRELL 153

Query: 165 QRL 167
           +  
Sbjct: 154 RER 156

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.6 bits (200), Expect = 5e-19
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +TPLH++A  GH D  + LL +K ++   ++   + PLH A   G  Q+ ++L+   A  
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
             C   ++ G +P+  A    R  + +    
Sbjct: 132 SIC---NKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 3/50 (6%)

Query: 112 ADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
              +    +      G    V+  +    N  +     HG + LH+    
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACRE 49

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.9 bits (227), Expect = 2e-22
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
              LH +A  G +D  + LL  K +L   ++    SPLH+AA E     V   L   ++ 
Sbjct: 145 NICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
                 +++G  PL  A++  +V    ++  A  DSA
Sbjct: 204 TL---KNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.7 bits (216), Expect = 7e-21
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T LH++A  GH +  + LL++        D    +P+  A    HV +VK LL   ++ 
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +     D +  I LH AA  G V++ + L++A  D   V  HGD+ LH  A  
Sbjct: 138 NI---RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.4 bits (210), Expect = 6e-20
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            +PLH +A  GH+D    L+     +       + +PL  AA   H++ VK L+   A  
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGDTVLHFKAEH 159
           D     D +G   LHLAA +G  EVVQ L+S    + +       G T + +  E+
Sbjct: 71  DP---KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ--DDGGWTPMIWATEY 121

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            N        Q+ R PLH AA  G V++   L+   AN D+        T L   AE+
Sbjct: 2   MNFKM---EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAEN 54

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.4 bits (218), Expect = 9e-22
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
              +H  A  G + +    +  +  +     D    +PL  AAA G + +V+ LL   A+
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
                   +     L LA  +G  ++V+ L+    + +     ++G T L +    
Sbjct: 62  PQL---LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY--DWNGGTPLLYAVHG 112

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.5 bits (213), Expect = 5e-21
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
           TPL  +A  G +   + LL +  +  + L   + S L LA ++G+  IVK LL    + +
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                D +G  PL  A     V+ V+ L+ +  D  +    G   +      
Sbjct: 97  E---YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 82.8 bits (206), Expect = 6e-20
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           E+ L ++   G+ D  K LL+   ++  E D    +PL  A    HV+ VK LL   A+ 
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
                    G   + LA   G   V Q + S 
Sbjct: 129 TI---ETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
              + +H  A +G +  +   I            G T L + A H
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH 46

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 86.7 bits (216), Expect = 1e-21
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
              L  +A  G  D  + L+ +        D L  SPLHLAA  GH    + LL    ++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           DA     +  R PLH+AA  G   +V+ L+   A+ ++        T LH+  EH
Sbjct: 61  DA---RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK--DMLKMTALHWATEH 110

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 81.3 bits (202), Expect = 1e-19
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            +PLH++A  GH   T+ LL       A+    +  +PLH+AA+EGH  IV+ LL   A+
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAASEGHANIVEVLLKHGAD 92

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            +A    D      LH A      EVV+ LI   A+  +        T      ++
Sbjct: 93  VNA---KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ--SKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.8 bits (180), Expect = 2e-16
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPLH++A  GH +  + LL H  ++ AK  D LK + LH A    H ++V+ L+   A+
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAK--DMLKMTALHWATEHNHQEVVELLIKYGAD 125

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
                   +  +    ++   G  ++ + L
Sbjct: 126 VHT---QSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.8 bits (97), Expect = 7e-05
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 115 DGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           D    L  AA  G+ + V+ L++  A F      + G + LH  A++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQY 44

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 85.5 bits (213), Expect = 2e-21
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH +A  GH +  K LL+   ++        ++PLHLAA  GH +IVK LL   A+ 
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLH 154
           +A     +DG  P HLA   G  E+V+ L +  A+ ++    +      H
Sbjct: 69  NA---RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR--SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.8 bits (167), Expect = 6e-15
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 9/79 (11%)

Query: 85  PLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANF 140
           PLH AA  GH + VK+LL   A+ +A     +DG  PLHLAA  G  E+V+ L++  A+ 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNA---RSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 141 DSALVKFHGDTVLHFKAEH 159
           ++      G+T  H   ++
Sbjct: 69  NAR--SKDGNTPEHLAKKN 85

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 111 VADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
              +DG  PLH AA  G  E V++L+S  A+ ++      G+T LH  A++
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKN 52

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.5 bits (223), Expect = 2e-21
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
              L  +     +D  + LL     +  + +    +PLH A       IV+ LL   A+ 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
                  ++G  P  LAA+ G V++++  +S  A+ +     F+G T     A +
Sbjct: 66  VL---RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC--DFYGFTAFMEAAVY 115

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 48  RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
             TPLH +  +   D  + LL H  +          +P  LAA  G V+++K  L   A+
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--AN--------FDSALVKFHGDTVLHF 155
            + C   D  G      AA+ G+V+ ++ L    AN         D   ++  G T L  
Sbjct: 98  VNEC---DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 156 KAEH 159
            AE 
Sbjct: 155 AAEK 158

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.1 bits (191), Expect = 6e-17
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKE---LLL--- 103
           T L  +A  GH++  K LL+         D++  + L  A        V+    LLL   
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGDTVLHFKAEH 159
           A+ +      + G+ PL LA  +  + +VQ L+       +       G T L    E 
Sbjct: 210 ADVNV---RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT--DSDGKTALLLAVEL 263

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 49  ETPLHISALLGHLDFTKA----LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL- 103
              L  + L       +A    LL+H  ++         +PL LA  + H+ +V+ LL  
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 104 --ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
                +     D DG+  L LA      ++ + L  
Sbjct: 242 EHIEIND---TDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 112 ADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           A  +    L  A     V++VQ+L+   AN +    +  G T LH   + 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQM 49

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 85.1 bits (212), Expect = 2e-21
 Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 12/116 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPLH++A  GHL+  K LL    ++ AK  D    +PLHLAA  GH+++VK LL   A+
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            +A    D++GR PLHLAA  G +EVV+ L+   A+ ++     +G T LH  A +
Sbjct: 61  VNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.2 bits (202), Expect = 8e-20
 Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 6/92 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH++A  GHL+  K LL    ++    D    +PLHLAA  GH+++VK LL   A+ 
Sbjct: 36  RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           +A    D++GR PLHLAA  G +EVV+ L+ A
Sbjct: 95  NA---KDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 115 DGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +GR PLHLAA  G +EVV+ L+   A+ ++     +G T LH  A +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN 45

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 47  LRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
           L++TPLH++ +    +  +ALL    +  +  D   ++PLHLA  +G +  V  L  +  
Sbjct: 44  LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102

Query: 107 DACLVA-----DQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
              L +     + +G   LHLA++ G + +V+ L+S  A+ + A    +G T LH   + 
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDL 161

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 86.4 bits (215), Expect = 9e-21
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            T LH++++ G+L   + L++   ++ A+E  + + + LHLA    +  +V  LL   A+
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR-TALHLAVDLQNPDLVSLLLKCGAD 176

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
            +        G  P  L   R    + Q+L     ++  +    +    +  E 
Sbjct: 177 VNR---VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.8 bits (203), Expect = 5e-19
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 49  ETPLHISALLGH----LDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL- 103
           ++ LH++ +       ++  + +      L    ++L+ +PLHLA      +I + LL  
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA 67

Query: 104 -ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK------FHGDTVLHFK 156
             + +     D  G  PLHLA  +G +  V  L  +     L        ++G T LH  
Sbjct: 68  GCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

Query: 157 AEH 159
           + H
Sbjct: 125 SIH 127

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            T LH++  L + D    LL    ++   +    +SP  L       +I ++L     + 
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210

Query: 109 CLVADQDGRIPLHLAAMRGRVEVV 132
            L    +              E  
Sbjct: 211 -LQMLPESEDEESYDTESEFTEFT 233

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 84.8 bits (211), Expect = 3e-21
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
           +     +   G LD  K  +    ++           PLH AA  G ++I++ LLL  A+
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHF 155
            +A    D+    PL  A   G V  V+ L+S  A+         G T    
Sbjct: 66  INA---PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK--GPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.4 bits (184), Expect = 3e-17
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 50  TPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            PLH +A  G L+  + LL    ++ A   D    +PL  A  EGHV  VK LL   A+K
Sbjct: 42  KPLHYAADCGQLEILEFLLLKGADINAP--DKHHITPLLSAVYEGHVSCVKLLLSKGADK 99

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQ 133
                   DG         +    ++Q
Sbjct: 100 TV---KGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 71.7 bits (177), Expect = 3e-16
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 85  PLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANF 140
               A   G +  VK+ +    + +      + GR PLH AA  G++E+++ L+   A+ 
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNR---TLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 141 DSALVKFHGDTVLHFKAE--HL 160
           ++     H  T L       H+
Sbjct: 67  NAP--DKHHITPLLSAVYEGHV 86

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                   A   G ++ V++ ++   D       G   LH+ A+ 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC 50

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 87.9 bits (219), Expect = 3e-21
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T LH +A+   +D  K  ++    + +    L  +PLH A  +GH+ +V +L+   A+ 
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
                 D +G   +HLAA  G   +V  LI+   + D      +G T L + A  
Sbjct: 103 SL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM--DQNGMTPLMWAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.1 bits (204), Expect = 5e-19
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 49  ETPLHISALLGH-LDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPL  +A   H +D T+ LL     +       K++ LH A   G+  ++  LL   AN
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
            DA    +  G   L LA  R  V ++  L  A
Sbjct: 203 VDAQ---NIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
              +  +   G  +  + L+    ++ ++ D    + LH AA    + +VK  +   A  
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           D           PLH A  +G + +V +L+   A+         G + +H  A+ 
Sbjct: 69  DQL--GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI--DGEGCSCIHLAAQF 119

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 79.0 bits (196), Expect = 6e-18
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL---ANK 106
           + +H++A  GH      L+    ++   +D    +PL  AA   H      LLL    + 
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +            LH A + G   V+  L+   AN D+      G++ L    + 
Sbjct: 170 NL--GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ--NIKGESALDLAKQR 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           D      +  A   G  E  +EL+    +           T+LH+ A +
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAIN 52

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 85.2 bits (212), Expect = 3e-21
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 12/130 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
           ET LHI+++ G +   + LL +  +   K  D    +PLH A   GH+++V+ LL   A 
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKAL 68

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEHLSLC 163
            +           PLH AA  G V++V+ L+S  A+ ++      G   + +  +     
Sbjct: 69  VNT---TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV--NIFGLRPVDYTDDESMKS 123

Query: 164 TQRLPSNYAA 173
              LP    +
Sbjct: 124 LLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 112 ADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            +  G   LH+A+++G +  V+ L+   ++ +       G T LH    H
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNH 53

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.9 bits (214), Expect = 3e-21
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +  L  +A  G ++  K L   +    ++++  + +PLH AA    V +V+ LL   A+ 
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            A    D+ G +PLH A   G  EV + L+   A  + A       T LH  A  
Sbjct: 69  HA---KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA--DLWKFTPLHEAAAK 118

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 80.5 bits (200), Expect = 3e-19
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPLH +A    +   + LL H  ++ AK  D     PLH A + GH ++ + L+   A 
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQHGADVHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAV 100

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAE 158
            +    AD     PLH AA +G+ E+ + L+   A+         G+T L    +
Sbjct: 101 VNV---ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK--KNRDGNTPLDLVKD 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAK--ELDSLKHSPLHLAAAEGHVQIVKELLL--A 104
             PLH +   GH +  + L+ H    A     D  K +PLH AAA+G  +I K LL   A
Sbjct: 76  LVPLHNACSYGHYEVAELLVKHG---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132

Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           +       ++DG  PL L    G  ++   L  
Sbjct: 133 DPTK---KNRDGNTPLDLVK-DGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLAN 105
            TPLH +A  G  +  K LL H  +   + +   ++PL L   +G   I  +LL  +
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVK-DGDTDIQ-DLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.6 bits (99), Expect = 4e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVK---FHGDTVLHFKAEH 159
           + +    L  AA  G VE V++L +    S   +       T LHF A +
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGY 52

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.2 bits (225), Expect = 5e-21
 Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL--LANK 106
           ETPLH++A  GH +  K LL +K ++         +PLH AA  GH  +VK LL   AN 
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +    A   G  PLH+AA  G VE V  L+      A +   G T LH  A++
Sbjct: 107 NL---ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.9 bits (224), Expect = 5e-21
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH++    +LD  K LL              ++PLH+AA +  V++ + LL    + 
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +A       G  PLHLAA  G  E+V  L+S   +  L    G T LH  A+ 
Sbjct: 239 NAE---SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.5 bits (223), Expect = 9e-21
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 10/115 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +TPLH +A +GH +  K LL +         +  H+PLH+AA EGHV+ V  LL   A++
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
                  + G  PLH+AA  G+V V + L+   A+ ++A    +G T LH    H
Sbjct: 140 ACM---TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHH 189

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.1 bits (222), Expect = 1e-20
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
           TPLH++A  G +   + LL               +PLH+A    ++ IVK LL    +  
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +      +G  PLH+AA + +VEV + L+     +      G T LH  A+ 
Sbjct: 207 S---PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLHI+A    ++  ++LL +      E      +PLHLAA EGH ++V  LL   AN 
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +     ++ G  PLHL A  G V V   LI            G T LH  + +
Sbjct: 272 NL---GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 88.3 bits (220), Expect = 2e-20
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH++A  GH +    LL+ +       +    +PLHL A EGHV +   L+      
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           DA     + G  PLH+A+  G +++V+ L+    D       G + LH  A+ 
Sbjct: 305 DA---TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 9e-20
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH+++ +GHL   K LL          +    +PLH+AA  GH ++ K LL   A  
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +A     +D + PLH AA  G   +V+ L+  N +  L    G T LH  A  
Sbjct: 74  NA---KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 1e-19
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH+++  G++   K LL H+ ++      L +SPLH AA +GH  IV  LL   A+ 
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF---HGDTVLHFKAEHLS 161
           +       DG  PL +A   G + V   L     +++ V     H  +      E L 
Sbjct: 371 NE---VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILD 425

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.2 bits (212), Expect = 3e-19
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH+ A  GH+     L+ H   +      + ++PLH+A+  G++++VK LL   A+ 
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +A     + G  PLH AA +G  ++V  L+        V   G T L      
Sbjct: 338 NAK---TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.4 bits (163), Expect = 8e-13
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 79  DSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELI 136
                +PLH+A+  GH+ IVK LL   A+ +    ++     PLH+AA  G  EV + L+
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLL 67

Query: 137 SANFDSALVKFHGDTVLHFKAEH 159
                         T LH  A  
Sbjct: 68  QNKAKVNAKAKDDQTPLHCAARI 90

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            +        + G  PLH+A+  G + +V+ L+   A+ + + VK   +T LH  A  
Sbjct: 5   ISGGG---GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK--VETPLHMAARA 57

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.5 bits (218), Expect = 5e-21
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPL ++A L      + L+N   ++   +D L  S LH AAA  +V     LL   ANK
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           D     +     PL LAA  G  E  + L+   AN D                E 
Sbjct: 184 DM---QNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHMDRLPRDIAQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.8 bits (211), Expect = 5e-20
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH +         + L+ ++            +PL LAA      ++++L+   A+ 
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +A    D  G+  LH AA    V+    L+   AN D        +T L   A  
Sbjct: 151 NA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ--NNREETPLFLAARE 200

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           ++ LH +A + ++D    LL +        ++ + +PL LAA EG  +  K LL   AN+
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANR 216

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
           D     D   R+P  +A  R   ++V+ L   +  
Sbjct: 217 DI---TDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.5 bits (192), Expect = 3e-17
 Identities = 32/129 (24%), Positives = 41/129 (31%), Gaps = 23/129 (17%)

Query: 49  ETPLHISALLG-------------HLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHV 95
            TPL I++  G                     +     L  + D    + LHLAA     
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 96  QIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGD 150
              K LL   A+ +     D  GR PLH A       V Q LI     + D+      G 
Sbjct: 71  DAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR--MHDGT 125

Query: 151 TVLHFKAEH 159
           T L   A  
Sbjct: 126 TPLILAARL 134

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 86.9 bits (216), Expect = 6e-21
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +  L               + H      + + L  + L  ++ EG   +V+ ++    + 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMR--VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
                 + +G   LH A   G  E+V+ L+    N ++A     G T LH  A  
Sbjct: 64  SL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASC 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 84.2 bits (209), Expect = 8e-20
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 45  TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL- 103
             L    L  S+L G  D  + ++    +     +    + LH A   GH +IVK L+  
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF 92

Query: 104 -ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVK-FHGDTVLHFKAEH 159
             N +A   AD DG  PLH AA    V+V + L+   A   +              + E 
Sbjct: 93  GVNVNA---ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.5 bits (189), Expect = 5e-17
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T LH +   GH +  K L+     +    DS   +PLH AA+  +VQ+ K L+   A  
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
            A   +D             G  +  Q L        ++       L      
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 7/86 (8%)

Query: 50  TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
           TPLH +A   ++   K L+            D    +       EG+ Q  + L      
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEV 131
                  ++     L     +   E+
Sbjct: 165 MGI---MNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 21/96 (21%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
                    G+   ++ L   + ++   ++      L     +       EL +   D  
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQND----DELPMKEGDCM 195

Query: 110 LV----------------ADQDGRIPLHLAAMRGRV 129
            +                 D++G +P +L  +  R+
Sbjct: 196 TIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 231

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 9/51 (17%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELIS----ANFDSALVKFHGDTVLHFKAEH 159
           +  G++ L         +   E I+      F+          +L   +  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-----LPLALLLDSSLE 47

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 85.1 bits (212), Expect = 8e-21
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 10/115 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH++A  GHL+  + LL +  ++   +D    +PL LAA  GH++IV+ LL   A+ 
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +A    D +G  PLHLAAM G +E+V+ L+   A+ ++      G T      ++
Sbjct: 107 NA---NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ--DKFGKTAFDISIDN 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.7 bits (211), Expect = 9e-21
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
             L  +A  G  D  + L+ +  ++    D+   +PLHLAA  GH++IV+ LL   A+ +
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           A    D  G  PL LAA+ G +E+V+ L+   A+ ++      G T LH  A  
Sbjct: 75  A---VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN--DMEGHTPLHLAAMF 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.5 bits (200), Expect = 4e-19
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPL ++AL GHL+  + LL +  ++ A   D   H+PLHLAA  GH++IV+ LL   A+
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNAN--DMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
            +A    D+ G+    ++   G  ++ + L   N
Sbjct: 139 VNA---QDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 115 DGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           D    L  AA  GR + V+ L++  A+ ++      G T LH  A +
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAE--DASGWTPLHLAAFN 57

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 86.3 bits (215), Expect = 8e-21
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH +         + L+ ++            +PL LAA      ++++L+   A+ 
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +A    D  G+  LH AA    V+    L+   AN D        +T L   A  
Sbjct: 119 NA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ--NNREETPLFLAARE 168

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.5 bits (213), Expect = 2e-20
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPL ++A L      + L+N   ++   +D L  S LH AAA  +V     LL   ANK
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           D     +     PL LAA  G  E  + L+   AN D                E 
Sbjct: 152 DM---QNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHMDRLPRDIAQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.4 bits (197), Expect = 3e-18
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 13/117 (11%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL---A 104
           ET LH++A     D  K LL    +   +  D++  +PLH A +     + + L+     
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRAT 83

Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           + DA      DG  PL LAA      ++++LI+  A+ ++      G + LH+ A  
Sbjct: 84  DLDA---RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD--LGKSALHWAAAV 135

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.2 bits (194), Expect = 8e-18
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 13/106 (12%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
           ++ LH +A + ++D    LL +      +  ++ + +PL LAA EG  +  K LL   AN
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQ--NNREETPLFLAAREGSYETAKVLLDHFAN 183

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHG 149
           +D     D   R+P  +A  R   ++V+ L          L   HG
Sbjct: 184 RDI---TDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL---HG 223

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.9 bits (175), Expect = 4e-15
 Identities = 27/106 (25%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 59  GHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDG 116
                    +     L  + D    + LHLAA        K LL   A+ +     D  G
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI---QDNMG 58

Query: 117 RIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGDTVLHFKAEH 159
           R PLH A       V Q LI     + D+      G T L   A  
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDAR--MHDGTTPLILAARL 102

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.8 bits (206), Expect = 9e-21
 Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 8/92 (8%)

Query: 50  TPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           TPLH++A  GHL+  K LL    ++ AK  D    +PLHLAA  GH+++VK LL   A+ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
           +A    D++GR PLHLAA  G +EVV+ L+ A
Sbjct: 62  NA---KDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.1 bits (173), Expect = 5e-16
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 9/79 (11%)

Query: 85  PLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANF 140
           PLHLAA  GH+++VK LL   A+ +A    D++GR PLHLAA  G +EVV+ L+   A+ 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 141 DSALVKFHGDTVLHFKAEH 159
           ++     +G T LH  A +
Sbjct: 62  NAK--DKNGRTPLHLAARN 78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 5e-05
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 115 DGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +GR PLHLAA  G +EVV+ L+   A+ ++     +G T LH  A +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN 45

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 87.2 bits (217), Expect = 1e-20
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSL------------KHSPLHLAAAEGHVQ 96
            T LH++  +        LL  +P   ++                 H+P  + +      
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 97  IVKELLL---ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDT 151
             +          +A    + DG  PLH+A +    E+V+ L    A+ +       G T
Sbjct: 139 EEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRT 194

Query: 152 VLHFKAEH 159
            LH   E 
Sbjct: 195 PLHLAVEA 202

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 8e-20
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPLH++ +    +  + L +   +L   E    + +PLHLA       +++ LL   A+
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR-TPLHLAVEAQAASVLELLLKAGAD 217

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
             A       GR PL  A +R    + + L +  A            +        
Sbjct: 218 PTA---RMYGGRTPLGSALLRPNPILARLLRAHGAPEPED--GGDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--A 104
           +T LH++ +  H  F   LL      E     + L  + LHLAA  G    V++L    A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
                  A++ G   LHLA           L+ 
Sbjct: 70  GVLV---AERGGHTALHLACRVRAHTCACVLLQ 99

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.2 bits (191), Expect = 5e-17
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            TPLH++         + LL    +          +PL  A    +  + + L    A +
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
                   D   P   +      +   E   
Sbjct: 252 PED---GGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 85  PLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANF 140
            LHLA    H   +  LL   A  +   + +  G+  LHLAA+ G    V++L +  A  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 141 DSALVKFHGDTVLHFKAEH 159
             A  +  G T LH     
Sbjct: 72  LVA--ERGGHTALHLACRV 88

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF---HGDTVLHFKAEH 159
            +DG   LHLA +      +  L+  +     +      G T LH  A  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL 55

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 85.8 bits (213), Expect = 1e-20
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 5/113 (4%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T L+ +   GH D  + L         + + L  + LH AA +G+  IV+ LL   A  
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           D     + + ++   +A       ++++    +    L               
Sbjct: 167 DLR---NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           ++ A      R+ + L   +  I+  T +    +T        G      +    +    
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDM---SDTNWWKGTSKGRTGLIPSNYVAEQ--- 69

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
                   +PLH AA  G++  ++E L      +     D+ G   L+ A   G  ++V+
Sbjct: 70  ---AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG---LDKAGSTALYWACHGGHKDIVE 123

Query: 134 ELIS---ANFDSALVKFHGDTVLHFKAEH 159
            L +      +       GDT LH  A  
Sbjct: 124 MLFTQPNIELNQQ--NKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 7/111 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           +  +  +           L   + ++   +  +  +      ++G   ++    +A +  
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA- 70

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                +    PLH AA RG +  ++E +        +   G T L++    
Sbjct: 71  -----ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG 116

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 7/48 (14%), Positives = 12/48 (25%)

Query: 112 ADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
             + G++ +  A          EL     D   +    DT        
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK 55

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 3/48 (6%), Positives = 10/48 (20%), Gaps = 1/48 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQ 96
           +    ++         K             ++  +     +  E H  
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEHHHH 220

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.2 bits (212), Expect = 3e-20
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 48  RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL----- 102
           R+TPLH++ +       + L+         LD    +  HLA        ++ LL     
Sbjct: 46  RQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104

Query: 103 -LANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
              + +A    + DG   LH+A      E VQ L+   A+ D+  +K  G + L    E+
Sbjct: 105 GTLDLEA---RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK-SGRSPLIHAVEN 160

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 83.7 bits (208), Expect = 1e-19
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 11/116 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            T LH++      +  + LL    ++ A ++ S   SPL  A     + +V+ LL   AN
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKS-GRSPLIHAVENNSLSMVQLLLQHGAN 175

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            +A       G   LH A+ RG + +V+ L+   A+        H DT L      
Sbjct: 176 VNA---QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK--NCHNDTPLMVARSR 226

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAK---ELDSLKHSPLHLAAAEGHVQIVKELLL-- 103
           +T  H++         +ALL+            +    + LH+A      + V+ LL   
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           A+ DA     + GR PL  A     + +VQ L+   AN ++    + G + LH  +  
Sbjct: 140 ADIDAV--DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ--MYSGSSALHSASGR 193

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 80.6 bits (200), Expect = 2e-18
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            +PL  +     L   + LL H   +         S LH A+  G + +V+ L+   A+ 
Sbjct: 151 RSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--AN 139
                 +     PL +A  R  +++++   +  A+
Sbjct: 210 SL---KNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 79.0 bits (196), Expect = 6e-18
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AK--ELDSLKHSPLHLAAAEGHVQIVKELLL-- 103
           +TPLHI+ + G+L     L+N   +   +    ++L+ +PLHLA       +V+ L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK----FHGDTVLHFKAEH 159
           A+  A    D+ G+   HLA        ++ L+ +     L      + G T LH     
Sbjct: 70  ASPMAL---DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 13/94 (13%)

Query: 74  LAKELDSLKHSPLHLAAAEGHVQIVKELLL------ANKDACLVADQDGRIPLHLAAMRG 127
           +A   D    +PLH+A  +G++  V  L+          D     +   + PLHLA +  
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI---YNNLRQTPLHLAVITT 57

Query: 128 RVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
              VV+ L++  A+  +     HG T  H   EH
Sbjct: 58  LPSVVRLLVTAGASPMAL--DRHGQTAAHLACEH 89

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.0 bits (214), Expect = 4e-20
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           LY A   G+++++   ++ +  ++      +  +T  + + +L  +      L+  P   
Sbjct: 99  LYYAVDSGNMQTVKLFVKKNWRLMFYG--KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIP-LHLAAMRGRVEVV 132
               ++  S +H+    GHV ++  LL    + +     +    IP + LA     +E++
Sbjct: 157 D--LAILLSCIHITIKNGHVDMMILLLDYMTSTNT---NNSLLFIPDIKLAIDNKDIEML 211

Query: 133 QELIS--ANFDSAL 144
           Q L     N  SA 
Sbjct: 212 QALFKYDINIYSAN 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.0 bits (214), Expect = 4e-20
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            +  + +    ++     LLN        E       PLH AA     +IVK LL    +
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTKIVKILLFSGLD 87

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFKAEH 159
                  D  G   L+ A   G ++ V+  +  N+      K    T  +     
Sbjct: 88  DSQ---FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML 139

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 82.6 bits (205), Expect = 6e-19
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           E PLH +A L      K LL    +   + D   ++ L+ A   G++Q VK  +      
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 107 DACLVADQDG-RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                  + G +   + A M   V +V   +S    +  +     + +H   ++
Sbjct: 122 MF---YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHITIKN 171

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.0 bits (201), Expect = 2e-18
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
            T L+ +   G++   K  +     L        K +  + A     V IV      ++ 
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWK-TSFYHAVMLNDVSIVS--YFLSEI 152

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
                       +H+    G V+++  L+  
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDY 183

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.4 bits (176), Expect = 6e-15
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            + +HI+   GH+D    LL++          L    + LA     +++++ L     D 
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF--KYDI 219

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEHLSL 162
                 +         +    E+ + +I     + S    +  D  +    +   +
Sbjct: 220 ------NIYSANLENVLLDDAEIAKMIIEKHVEYKSD--SYTKDLDIVKNNKLDEI 267

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.0 bits (162), Expect = 5e-13
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 17/115 (14%)

Query: 50  TPLHISALLGHLDFTKALLN-HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
               I+         K+ L+      A   D   HS  + A A+ +V++V  LL   A K
Sbjct: 3   DLSRINT--WKSKQLKSFLSSKDTFKA---DVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +       +   PLH AA     ++V+ L+    +         G+T L++  + 
Sbjct: 58  NL-----LENEFPLHQAATLEDTKIVKILLFSGLDDSQF--DDKGNTALYYAVDS 105

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.4 bits (215), Expect = 5e-20
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 12/116 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPLH++A    +   + LL H  ++ AK  D     PLH A + GH ++ + LL   A 
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGAC 116

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            +A    D     PLH AA + RVEV   L+S  A+        HG + +      
Sbjct: 117 VNA---MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV--NCHGKSAVDMAPTP 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
             PLH +   GH + T+ LL H   +   +D  + +PLH AA++  V++   LL   A+ 
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQR 166
                 +  G+  + +A      E +                G ++L    E      ++
Sbjct: 151 TL---VNCHGKSAVDMAPTPELRERLTYEFK-----------GHSLLQAAREADLAKVKK 196

Query: 167 LPSNYAA 173
             +    
Sbjct: 197 TLALEII 203

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.2 bits (199), Expect = 8e-18
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 49  ETPLHISALLGH---LDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL-- 103
           ET LH +    H       + LL     +  E +    +PLH+AA   H  +++ L    
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAE 158
           A  +A    D  G+  LH AA+ G ++  + L+S   D +++   G T      E
Sbjct: 271 AKMNAL---DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 48  RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
           ++  L  +           L           D  K +PLHLAA    V+IV+ LL   A+
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
             A    D+ G +PLH A   G  EV + L+   A  ++        T LH  A  
Sbjct: 84  VHA---KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM--DLWQFTPLHEAASK 134

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.6 bits (187), Expect = 3e-16
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 32/138 (23%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL----------AKEL----------DSLKHSPLHL 88
           ++ + ++      +           L           K+                + LH 
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHC 217

Query: 89  AAAEGH---VQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFD 141
           A A  H    Q+ + LL   AN +     ++D   PLH+AA R   +V++ L    A  +
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNE---KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274

Query: 142 SALVKFHGDTVLHFKAEH 159
           +  +   G T LH  A  
Sbjct: 275 A--LDSLGQTALHRAALA 290

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL---AN 105
           ++ L    L        A               K   L  AA  G+ + +  LL     N
Sbjct: 5   KSALD---LADP----SAKAVLT-------GEYKKDELLEAARSGNEEKLMALLTPLNVN 50

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
             A    D     PLHLAA   RV +VQ L+   A+  +      G   LH    +
Sbjct: 51  CHAS---DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSY 101

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 84.4 bits (210), Expect = 5e-20
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 13/119 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--- 103
             PLH S      + T  LL+      L    D    +P H+A + G++++VK L     
Sbjct: 37  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

Query: 104 -ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
             + +        G   LHLA  +   EV Q LI   A+             LH  A  
Sbjct: 97  KPDLNK---ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK--DKFNQIPLHRAASV 150

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.3 bits (207), Expect = 2e-19
 Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
             PLH + +       + LL+ KP L  + D     PLH + +    +I   LL    N 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS----ANFDSALVKFHGDTVLHFKAEH 159
           +     D  G  P H+A   G +EVV+ L       + +       G T LH     
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--TNQGVTCLHLAVGK 117

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.7 bits (203), Expect = 5e-19
 Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           L+ +    +    + L+     +           TP HI+  +G+L+  K+L +   +  
Sbjct: 40  LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99

Query: 76  KEL-DSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVV 132
                +   + LHLA  +   ++ + L+   A+       D+  +IPLH AA  G ++++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLI 156

Query: 133 QELISANFDSALVKF---HGDTVLHFKAEH 159
           + L       + V +    G T L      
Sbjct: 157 ELLCGLG--KSAVNWQDKQGWTPLFHALAE 184

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            T LH++      + ++ L+ +   + +  D     PLH AA+ G ++++ ELL     +
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLI-ELLCGLGKS 165

Query: 109 CL-VADQDGRIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGDTVLHF 155
            +   D+ G  PL  A   G  +    L+    A +D       G      
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL---AN 105
           + PLH +A +G L   + L           D    +PL  A AEGH      L+    A 
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
            D     D  G     +A      +V +  ++
Sbjct: 201 YDL---VDNKGAKAEDVAL---NEQVKKFFLN 226

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.6 bits (213), Expect = 5e-20
 Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL---A 104
            +PLH + L GHL   K LL H  ++     D   H+PL  A   G    V  LLL   A
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQVNGVTAD--WHTPLFNACVSGSWDCV-NLLLQHGA 149

Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +       + D   P+H AA RG VE V  LI+   N D  +   H  T L+   E+
Sbjct: 150 SVQP----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS--HLGTPLYLACEN 200

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.5 bits (205), Expect = 6e-19
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            +P+H +A  GH++   +L+ +   +  +  S   +PL+LA        VK+LL     A
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLL--ESGA 214

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            +   +    PLH        E+   L+   A+  +      G   +      
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA--KNAEGKRPVELVPPE 265

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.9 bits (193), Expect = 3e-17
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +  +  S   G  DF    L   P +   +     SP+H AA  GH   ++ L+      
Sbjct: 28  QGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAV 85

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +       D   PLH A + G +  V+ L+   A  +         T L      
Sbjct: 86  NI---ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV--TADWHTPLFNACVS 135

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           ++EA+ RG V  +N+L+     I  K S      TPL+++         K LL    ++ 
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISH---LGTPLYLACENQQRACVKKLLESGADVN 217

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVV 132
           +     + SPLH        ++   L+   A+  A    + +G+ P+ L      +  +
Sbjct: 218 Q--GKGQDSPLHAVVRTASEELACLLMDFGADTQA---KNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.5 bits (153), Expect = 8e-12
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 54  ISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD 113
           + +   H   +  L+     +A      K   +  +   G        LL+N    +   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDG--KQGGMDGSKPAGPRDFPGIRLLSN--PLMGDA 56

Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                P+H AA+ G    ++ LIS  +   ++     + LH     
Sbjct: 57  VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG 102

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.5 bits (215), Expect = 5e-20
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAK----ELDSLKHSPLHLAAAEGHVQIVKELLL- 103
           ETPL  +    + +    +++  P  +       +   +S LH A       +    +  
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 104 -ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFH-GDTVLH 154
             + +     D +  +PL+L+     V + +EL+     F      +H G TVL 
Sbjct: 234 GIDVNME---DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.3 bits (212), Expect = 1e-19
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
              +H++A  G  D  + L+          +    + LHLA   G V   K L    +  
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEV- 78

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
              +   G+ P+HLA M  + ++V  L+    +       G        E 
Sbjct: 79  --HSLWHGQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNEC 121

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 12/121 (9%), Positives = 28/121 (23%), Gaps = 17/121 (14%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKH------------SPLHLAAAEGHVQ 96
             PL++S     +  TK LL        +     +              +  AA     +
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 97  IVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
           +++ L            +   G         +    V +  ++ +               
Sbjct: 305 VLQLLQEKLDEVVR---SLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSA 361

Query: 155 F 155
            
Sbjct: 362 V 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.8 bits (203), Expect = 3e-18
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 13/123 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL-----L 103
            + LH + L+   D     +    ++  E D+    PL+L+     V + KELL      
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNME-DNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270

Query: 104 ANKDA-------CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFK 156
             +          L         +  AA   + EV+Q L     +       G      +
Sbjct: 271 LIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKR 330

Query: 157 AEH 159
            + 
Sbjct: 331 KKK 333

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 79.9 bits (198), Expect = 1e-17
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 49  ETPLHISALLG--HLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--- 103
           +T LH    LG  +L+  K L+          D    +PL  A    + + +  ++    
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVP 197

Query: 104 ----ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                  D    A++ G   LH A +    +V    +    D  +        L+     
Sbjct: 198 SKSSLRLDY---ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA 254

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.0 bits (193), Expect = 5e-17
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 20/115 (17%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           + P+H++ +    D   AL+                P  L       ++ +  + ++   
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDEREVNE--IGSH--- 132

Query: 109 CLVADQDGRIPLHLAAMRG--RVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
             V    G+  LH     G   +E+++ L+   A+  +       +T L    E 
Sbjct: 133 --VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK--DKADETPLMRAMEF 183

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 16/111 (14%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            T LH++   G +D  K L +               P+HLA       +V   L+     
Sbjct: 54  CTALHLACKFGCVDTAKYLASVG---EVHSLWHGQKPIHLAVMANKTDLV-VALVEGAK- 108

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                + G++P  L       EV +               G T LH+    
Sbjct: 109 -----ERGQMPESLLNECDEREVNEIGSHVKHC------KGQTALHWCVGL 148

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            N+     +D +    +H+AA +G+ + V+ LI    +         G T LH   + 
Sbjct: 11  LNRIK---SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR--FGCTALHLACKF 63

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 81.7 bits (203), Expect = 1e-19
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            +P+H +A  G LD  K L+ H  ++    D     P+HLA  EGH  +V   L   ++ 
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVV-SFLAAESDL 126

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
                 D  G  PL LA  RG  ++V  L  
Sbjct: 127 HR---RDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.5 bits (200), Expect = 3e-19
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +T L +  + G       LL          D+   SP+H AA  G +  +K L+   A+ 
Sbjct: 37  KTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFKAEH 159
           +     D  G +P+HLA   G   VV  L + ++         G T L    + 
Sbjct: 95  NV---PDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDA--RGLTPLELALQR 143

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 77.5 bits (192), Expect = 4e-18
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
             L  +A  G +   + LL+ +      L+    + L      G   I  ELL   A+ +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPN 62

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                D  G  P+H AA  G ++ ++ L+    D  +    G   +H   + 
Sbjct: 63  V---QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 82.2 bits (204), Expect = 1e-19
 Identities = 37/178 (20%), Positives = 56/178 (31%), Gaps = 23/178 (12%)

Query: 3   IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLD 62
           IG+R   E +          G   S        + ++ +       ETP   +A      
Sbjct: 6   IGSRTAGEGAME-YLIEWKDGHSPSWVPSSYIAADVVSE------YETPWWTAARKADEQ 58

Query: 63  FTKALL-----NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQD 115
               LL     +         D    + L   A  G  + V+ L    A+ D      + 
Sbjct: 59  ALSQLLEDRDVDAV-------DENGRTALLFVAGLGSDKCVRLLAEAGADLDH--RDMRG 109

Query: 116 GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA 173
           G   LH+AA   R EVV+ L+    D  +    G T L    E L    +  P  +  
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.5 bits (166), Expect = 4e-14
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 23/111 (20%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            T L   A LG     + L     +L  +++     + LH+AA     ++V+ L+   A+
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGAD 135

Query: 106 KDACLVADQDGRIPLHLAAMRGRVE----------------VVQELISANF 140
            +     D+ G   L LA    +                  V+  L    F
Sbjct: 136 IEV---EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 183

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.5 bits (205), Expect = 2e-19
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL---A 104
            TPL+I+     ++  KAL++   ++  +  +S+  SP   A A+G  +I+  +L     
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQ--NSISDSPYLYAGAQGRTEILAYMLKHATP 97

Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGDTVLHF 155
           + +     ++ G   L  AA +G ++ V+ L+     + D       G T L  
Sbjct: 98  DLNK---HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF--QNDFGYTALIE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.4 bits (197), Expect = 2e-18
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
              L  +         + L +   ++  E+D+  ++PL++A     ++I K L+   A+ 
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGDTVLHFKAEH 159
           +     +     P   A  +GR E++  ++     + +      +G   L   AE 
Sbjct: 66  NL---QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH--NRYGGNALIPAAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.6 bits (187), Expect = 6e-17
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA-----EGHVQIVKELLL 103
              L  +A  GH+D  K LL    E     +   ++ L  A       + +  IVK L+ 
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 104 --ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
             A++      D  GR  +  A  +G  E+ + L   N
Sbjct: 167 NGADQSI---KDNSGRTAMDYANQKGYTEISKILAQYN 201

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.0 bits (201), Expect = 2e-19
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
             P+ +  ++G     + LL H  E      +    P+H AA EG +  +  L    A  
Sbjct: 46  RRPIQV-MMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           D     D  GR+P+ LA   G  +V + L +A   +      G       A  
Sbjct: 105 DV---RDAWGRLPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.8 bits (185), Expect = 4e-17
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
              L  +A  G ++  +ALL          +S    P+ +    G  ++ + LLL  A  
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQV-MMMGSARVAELLLLHGAEP 70

Query: 107 DACLVADQDGR-IPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +    AD      P+H AA  G ++ +  L  A     +    G   +    E 
Sbjct: 71  NC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 68.7 bits (169), Expect = 7e-15
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
            P+H +A  G LD    L      L    D+    P+ LA   GH  + + L  A     
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAA---- 134

Query: 110 LVADQDGRIPLHLAAMRGRVEVV 132
                 G     + A  G  ++ 
Sbjct: 135 --GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 111 VADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
            + +     L  AA RGRVE V+ L+ A  +      +G   +  
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV 51

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 80.6 bits (200), Expect = 2e-19
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
            P+ +  ++G     + LL H  E      +    P+H AA EG +  +  L    A  D
Sbjct: 47  RPIQV-MMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
                D  GR+P+ LA  +G  ++ + L +A
Sbjct: 106 V---CDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.9 bits (193), Expect = 2e-18
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +  L  +A  G ++  + LL    +    L+     P+ +    G  Q+ + LLL  A  
Sbjct: 13  DAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQV-MMMGSAQVAELLLLHGAEP 70

Query: 107 DACLVADQDGR-IPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           +    AD      P+H AA  G ++ +  L  A     +    G   +    E 
Sbjct: 71  NC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
                           L  AA RG+VE V++L+ A  D   +   G   +  
Sbjct: 3   PGIHM---LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV 51

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.1 bits (204), Expect = 2e-19
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            T L  +     L   + LL+    +  K  D    +PL  +   G+ ++   LL   AN
Sbjct: 69  STALIWAVKNNRLGIAEKLLSKGSNVNTK--DFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVK-FHGDTVLHFKAEH 159
            +     + +G  PL +A+  GR E+V++L+   A+      +   G T        
Sbjct: 127 VND---RNLEGETPLIVASKYGRSEIVKKLLELGADIS---ARDLTGLTAEASARIF 177

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 77.8 bits (193), Expect = 6e-18
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
           +TPL  S + G+ + +  LL H   +  +  +    +PL +A+  G  +IVK+LL   A+
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDR--NLEGETPLIVASKYGRSEIVKKLLELGAD 159

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
             A    D  G      A + GR EV++      
Sbjct: 160 ISA---RDLTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 77.0 bits (191), Expect = 1e-17
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           E    I            L N++       DS   +PL +A   G    + +L+      
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVENFDKL 61

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVK-FHGDTVLHFKAEH 159
           +     D +G   L  A    R+ + ++L+S  +N +    K F G T L +    
Sbjct: 62  ED---KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---TKDFSGKTPLMWSIIF 111

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 13/86 (15%)

Query: 77  ELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI 136
            +D        +   +   Q +    L N       D   R PL +A M G    + +L+
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLD--FLRNY-----RDSYNRTPLMVACMLGMENAIDKLV 55

Query: 137 S--ANFDSALVK-FHGDTVLHFKAEH 159
                 +    K   G T L +  ++
Sbjct: 56  ENFDKLED---KDIEGSTALIWAVKN 78

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
           ETPL +++  G  +  K LL    ++ A+  D    +    A   G  +++K      +
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISAR--DLTGLTAEASARIFGRQEVIKIFTEVRR 191

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 83.3 bits (207), Expect = 4e-19
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
           T LH + +  ++D  K L+ +   +  + D+    PLH AA+ G++ I + L+   A+  
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
           A    + +G  PL +A      E++Q  ++            +     +   +    ++ 
Sbjct: 134 A---VNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKEEERIMLRDARQW 184

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           E        +   D  + L +              + LH+AAA+G+ +++K L+    + 
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +     D DG  PLH AA  G+ E  + L+    + ++      G T      E 
Sbjct: 226 NI---KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV--NKVGQTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.9 bits (193), Expect = 3e-17
 Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 12/157 (7%)

Query: 6   REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTK 65
           +  D             GS   L   +        K             +   G  +   
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD----DGAVFLAACSSGDTEEVL 57

Query: 66  ALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHL 122
            LL    ++    +D L  + LH A  + +V +VK L+   AN +     D +G IPLH 
Sbjct: 58  RLLERGADINYANVDGL--TALHQACIDDNVDMVKFLVENGANINQP---DNEGWIPLHA 112

Query: 123 AAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
           AA  G +++ + LIS       V   GDT L    E 
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +TPL I+      +  +  +N +            +              + L     N 
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDARQWLNSGHIND 192

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                  + G   LH+AA +G  EV++ LI A +D  +  + G T LH  A  
Sbjct: 193 VR---HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T LH++A  G+ +  K L+  + ++    D    +PLH AA  G  +  + L+    + 
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
           +A    ++ G+    +A       + +     N
Sbjct: 259 EAV---NKVGQTAFDVADEDILGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
           TPLH +A  G  +  + L+ +  ++ + ++ +  +   +A  +    + +     N  
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 80.1 bits (199), Expect = 4e-19
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T L +  L G+ +  + LL          D    + +H AA  G +  ++ LL   A+ 
Sbjct: 39  RTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS---ANFDSALVKFHGDTVLHFKAEH 159
           +     D +G +PLHLAA  G + VV+ L+    +N         GDT       +
Sbjct: 97  NI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR--NHKGDTACDLARLY 147

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.3 bits (197), Expect = 1e-18
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 13/116 (11%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
              L  +A  G L+   +LL +   + A+  +    + L      G+ +I + LLL  AN
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQ-VMKLGNPEIARRLLLRGAN 62

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
            D     D+ G   +H AA  G ++ +Q L+   A+ +       G+  LH  A+ 
Sbjct: 63  PDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE--DNEGNLPLHLAAKE 113

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 77.4 bits (192), Expect = 5e-18
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL---AN 105
              +H +A  G LD  + LL  + ++    D+  + PLHLAA EGH+++V+ L+    +N
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
                  +  G     LA + GR EVV  + +
Sbjct: 130 VGH---RNHKGDTACDLARLYGRNEVVSLMQA 158

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.4 bits (197), Expect = 5e-19
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 12/115 (10%)

Query: 50  TPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
             L  +A  G  D  + L+ +  ++ AK  D    +PL+LA A GH++IV+ LL   A+ 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           +A    D  G  PLHLAA  G +E+ + L+   A+ ++      G T       +
Sbjct: 74  NA---VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ--DKFGKTAFDISIGN 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 76.7 bits (190), Expect = 5e-18
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLL--AN 105
            TPL+++   GHL+  + LL +  ++ A   D++  +PLHLAA  GH++I + LL   A+
Sbjct: 48  LTPLYLATAHGHLEIVEVLLKNGADVNAV--DAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
            +A    D+ G+    ++   G  ++ + L   N
Sbjct: 106 VNA---QDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 37.7 bits (89), Expect = 7e-04
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 115 DGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
           D    L  AA  G+ + V+ L++  A+ ++     +G T L+    H
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAK--DEYGLTPLYLATAH 57

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 83.5 bits (207), Expect = 6e-19
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 15/123 (12%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKEL-------DSLKHSPLHLAAAEGHVQIVKEL 101
            T LH  A     + ++ L+ H+ +            D  +++PL LA      ++V  L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

Query: 102 LL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK---FHGDTVLHFK 156
           +   A+       ++  R  LH AA      ++  ++++      ++    +G T L   
Sbjct: 186 MKAGADPTI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242

Query: 157 AEH 159
           A +
Sbjct: 243 AHN 245

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T LH +A + ++   K L+  K     + D    +P+ LAA EG +++V  L+   A+ 
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
           +A    D        LA       +V       
Sbjct: 340 EA---VDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 49  ETPLHISALLGHLDF---TKALLNH-------KPELAKELDSLKHSPLHLAAAEGHVQIV 98
            T L I A     D     K L+                      + LH AA   ++ IV
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 99  KELLL---ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVL 153
           K L+    +NKD     D+DG+ P+ LAA  GR+EVV  LI   A+ ++  V     T  
Sbjct: 296 KYLVGEKGSNKDKQ---DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA--VDATDHTAR 350

Query: 154 HFKAEH 159
                +
Sbjct: 351 QLAQAN 356

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 20/127 (15%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL----- 103
            TPL ++ L         L+    +     +  + S LH AAA     ++  +L      
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 104 ANKDACLVADQDGRIPLHLAAMRG---RVEVVQELIS--ANFDSALVKF------HGDTV 152
            + +     D++G   L + A      +V   + L+   A  D             G T 
Sbjct: 226 GDIEE---LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 153 LHFKAEH 159
           LH+ A+ 
Sbjct: 283 LHYAAQV 289

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 26/162 (16%), Positives = 43/162 (26%), Gaps = 24/162 (14%)

Query: 6   REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTK 65
            +    S H L EAS  G ++     +Q  S              P       G+     
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQRNELQHYS------------LYPNPQGYGNGNDFLGD 78

Query: 66  ALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM 125
               +      E +      LH   A G   I +   +  +   ++  +  R  LH  A 
Sbjct: 79  FNHTNLQIP-TEPEPESPIKLH-TEAAGSYAITE--PITRESVNIIDPRHNRTVLHWIAS 134

Query: 126 RGRVEVVQELISANFDSALVK--------FHGDTVLHFKAEH 159
               E  ++LI       +             +T L      
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 176

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
           +TP+ ++A  G ++    L+     + + +D+  H+   LA A  H  IV         +
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

Query: 107 D 107
           +
Sbjct: 373 E 373

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 81.2 bits (201), Expect = 9e-19
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
              L  +AL G L+  +  +    +   + +    + LH A    +  IV  L+   AN 
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGANV 80

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHF 155
           ++    D  G  PLH AA      +   L+   A   +  +   G T    
Sbjct: 81  NSP---DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS-DGATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 7/113 (6%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T LH +    +      L+     +    DS   +PLH AA+     I   L+   A  
Sbjct: 55  ITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

Query: 107 DACLVADQDGRIPLHLAAM--RGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
            A      DG            G  +    L        L+       L   +
Sbjct: 114 FA--TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 85  PLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANF 140
            L  AA  G +++V++ +    +       +++G   LH A       +V  LI+  AN 
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQ---PNEEGITALHNAICGANYSIVDFLITAGANV 80

Query: 141 DSALVKFHGDTVLHFKAEH 159
           +S     HG T LH  A  
Sbjct: 81  NSP--DSHGWTPLHCAASC 97

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 49  ETPLHISALL--GHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
            T          G+ D    L + +  +   ++S     L   +AE     +      + 
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGD-ELSFREGESV 179

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVV 132
              L  D         AA+ G+   V
Sbjct: 180 TV-LRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 98  VKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVL 153
           ++ +L    +      A  +  + L  AA+ G +EVVQ+ +    +      +  G T L
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--GITAL 58

Query: 154 HFKAEH 159
           H     
Sbjct: 59  HNAICG 64

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.3 bits (199), Expect = 2e-18
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL-ANKDA 108
               I    GH            ++  E      +P   AA +   Q + +LL   + DA
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLLEDRDVDA 72

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEH 159
               D++GR  L   A  G  + V+ L    A+ D   ++  G T LH  A +
Sbjct: 73  ---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR-GGLTALHMAAGY 121

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 37/180 (20%), Positives = 57/180 (31%), Gaps = 27/180 (15%)

Query: 3   IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLD 62
           IG+R   E +          G   S        + ++ +       ETP   +A      
Sbjct: 7   IGSRTAGEGAME-YLIEWKDGHSPSWVPSSYIAADVVSE------YETPWWTAARKADEQ 59

Query: 63  FTKALL-----NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQD 115
               LL     +         D    + L   A  G  + V+ L    A+ D      + 
Sbjct: 60  ALSQLLEDRDVDAV-------DENGRTALLFVAGLGSDKCVRLLAEAGADLDH--RDMRG 110

Query: 116 GRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA 173
           G   LH+AA   R EVV+ L+   A+ +       G T L    E L    +  P  +  
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVE--DERGLTALELAREILKTTPKGNPMQFGR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 28/134 (20%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANK 106
            T LH++A     +  +AL+    ++ +  D    + L LA            +      
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRI 170

Query: 107 DA-------------------CLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALV 145
                                 +     G+   +L   +   +         A     + 
Sbjct: 171 GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE---DVA 227

Query: 146 KFHGDTVLHFKAEH 159
           K   +  L +    
Sbjct: 228 K-DYEDGLEYAVAE 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 9/105 (8%), Positives = 24/105 (22%), Gaps = 30/105 (28%)

Query: 49  ETPLHISALLGHLDFTKALLNH-------------------KPELAKELDSLKHS--PLH 87
            T L ++  +         +                       E+ + ++         +
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204

Query: 88  LAAAEGHVQIVKELLLANKDACLVAD---QDGRIPLHLAAMRGRV 129
           L   +        +   +     VA+   +D    L  A     +
Sbjct: 205 LVRWKDGGDCE-WVKGVH-----VAEDVAKDYEDGLEYAVAESVI 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 15  KLYEASLRGSVRSLNTLMQ-----SDSLILRKTSLTSLRETPLHISALL---GHLDFTKA 66
           +L+    RG    L  L++     S  L     +  S  +T L  + L    G       
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 67  LLNHKPELAKEL----------DSLKHSPLHLAAAEGHVQIVKELLL--ANKDA------ 108
           LL    +                   HS LH+A  +  +Q VK L+   A+         
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 109 ----CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK---FHGDTVLHFKAEHLS 161
                      G +PL LAA   + +VV  L+      A ++     G+TVLH       
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 162 LCTQRLPSNYAAW 174
              +        +
Sbjct: 185 NSPENSALVIHMY 197

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 23/122 (18%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELA------------------KELDSLKHSPLHLAA 90
           E PL ++A     D    LL +  + A                     +S ++S L +  
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196

Query: 91  AEGHVQIVKELL--LANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFH 148
            +G +Q+   L   +  ++    ++  G  PL LAA  G++E+ + ++   F  A    H
Sbjct: 197 YDGLLQMGARLCPTVQLEEI---SNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHH 253

Query: 149 GD 150
             
Sbjct: 254 HH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 65.6 bits (160), Expect = 6e-13
 Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 30/141 (21%)

Query: 49  ETPLHISALLGHLDFTKALLNH------------KPELAKELDSLKHSPLHLAAAEGHVQ 96
            + LHI+     L   K L+ +              +           PL LAA      
Sbjct: 91  HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 97  IVKELL-----LANKD------------ACLVA-DQDGRIPLHLAAMRGRVEVVQELISA 138
           +V  LL      A+ +              ++A +      L +    G +++   L   
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

Query: 139 NFDSALVKFHGDTVLHFKAEH 159
                +    G T L   A+ 
Sbjct: 211 VQLEEISNHQGLTPLKLAAKE 231

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 33/143 (23%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHS-------PLHLAAA---EGHVQIVK 99
             L      G  +    LL +    +K L    ++        L  A     +G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 100 ELLLANKDACLVA----------DQDGRIPLHLAAMRGRVEVVQELISA----------- 138
            LL  +KD+                 G   LH+A  +  ++ V+ L+             
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 139 --NFDSALVKFHGDTVLHFKAEH 159
                     + G+  L   A  
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACT 146

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.1 bits (195), Expect = 5e-18
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
              +++      +  + +L  K       D    + LH A + GH +IV+ LL      +
Sbjct: 9   MICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                D  G  PLH+AA  G  E+V+ L+        V  +G T LH+ A  
Sbjct: 68  D---KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 5/145 (3%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           L+ A+  G    +  L+   + +           TPLH +A     +    LL       
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQN---GCTPLHYAASKNRHEIAVMLLEGGANP- 132

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
              D    + +H AAA+G++++V  +LL  K +  + D +G  PLHLA    RVE  + L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 136 ISANFDSALVKFHGDTVLHFKAEHL 160
           ++      +      T L      L
Sbjct: 192 VTQGASIYIENKEEKTPLQVAKGGL 216

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            T LH +   GH +  + LL     +  + D    SPLH+AA+ G  +IV + LL     
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIV-KALLVKGAH 98

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
               +Q+G  PLH AA + R E+   L+    +      +  T +H  A  
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            +PLHI+A  G  +  KALL     +   ++    +PLH AA++   +I   +LL     
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIA-VMLLEGGAN 131

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP 168
               D      +H AA +G +++V  L+     + +    G+T LH   +   +   +  
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 169 SNYAA 173
               A
Sbjct: 192 VTQGA 196

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.8 bits (195), Expect = 6e-18
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKEL----DSLKHSPLHLAAAEGHVQIVKELLL- 103
           ET LHI+AL  +L+    L+   PEL  E          + LH+A    +V +V+ LL  
Sbjct: 38  ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97

Query: 104 -ANKDA----------CLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGD 150
            A+  A                 G  PL  AA  G  E+V+ LI   A+  +      G+
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ--DSLGN 155

Query: 151 TVLHFKAEH 159
           TVLH     
Sbjct: 156 TVLHILILQ 164

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVK---ELLLA 104
           E PL  +A +G  +  + L+ H  ++ A+  DSL ++ LH+   + +         LLL+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQ--DSLGNTVLHILILQPNKTFACQMYNLLLS 179

Query: 105 N------KDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
                  K   LV +  G  P  LA + G + + Q L+ 
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 31/135 (22%)

Query: 49  ETPLHISALLGHLDFTKALL-------NHKPELAKELDSLKHSPLHLAAAEGHVQIVKEL 101
           E+PL ++A    +     LL       + +        ++  + LH+AA   +++    L
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQR-------GAMGETALHIAALYDNLEAAMVL 56

Query: 102 LL--ANKDACLV--ADQDGRIPLHLAAMRGRVEVVQELIS--AN-----------FDSAL 144
           +          +     +G+  LH+A +   V +V+ L++  A+           +    
Sbjct: 57  MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 145 VKFHGDTVLHFKAEH 159
           + ++G+  L F A  
Sbjct: 117 LIYYGEHPLSFAACV 131

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.9 bits (185), Expect = 1e-17
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 59  GHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDG 116
            H   +  L+     +     S     L  AA  G    V+ L+   A+  A    D++G
Sbjct: 5   HHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAA---KDKNG 57

Query: 117 RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
             PLHLAA  G +EVV+ L+ A  D       G T      ++
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL--ANKD 107
             L  +A  G  D  + L+ +  ++    D    +PLHLAA  GH+++VK LL   A+  
Sbjct: 26  KKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
           A    D+ G+    ++   G  ++ + L
Sbjct: 85  A---QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.1 bits (131), Expect = 7e-10
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 89  AAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSAL 144
            ++  H      L+   ++  +      D    L  AA  G+ + V+ L++  A+  +  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS------DLGKKLLEAARAGQDDEVRILMANGADVAAK- 53

Query: 145 VKFHGDTVLHFKAEH 159
              +G T LH  A +
Sbjct: 54  -DKNGSTPLHLAARN 67

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKEL 101
            TPLH++A  GHL+  K LL    ++  + D    +   ++   G+  + + L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 24/128 (18%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAK--ELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
           E PL ++A    L   K LL +  + A     DS+ ++ LH         +     + + 
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 107 DACL---------------VADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDT 151
              +               + ++ G  PL LAA  G++ V+  ++               
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPE 261

Query: 152 VLHFKAEH 159
             H  A H
Sbjct: 262 CRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 36/193 (18%)

Query: 3   IGAREHDEDSTHK--LYEASLRGSVRSLNTLMQS-DSLILRKTSL----TSLRETPLHIS 55
           + A E       +  +++A  + + + L +L+        R T          +T L  +
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 56  ALL---GHLDFTKALLNHKPEL----------AKELDSLKHSPLHLAAAEGHVQIVKELL 102
            L    G  D    LL+   +             +      + LH+A    ++ +V  L+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 103 L--ANKDAC-----------LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF-- 147
              A+  A                  G +PL LAA   ++ +V+ L+  ++  A +    
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 148 -HGDTVLHFKAEH 159
             G+TVLH   E 
Sbjct: 182 SVGNTVLHALVEV 194

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 23/127 (18%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTK---------- 65
           L  A+    +  +  L+Q+       ++  S+  T LH    +                 
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 66  -----ALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPL 120
                A L+   +L +  +    +PL LAA+ G + ++  +L   ++             
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL--QREI------HEPECR 263

Query: 121 HLAAMRG 127
           H AA   
Sbjct: 264 HAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGH 94
           TPL ++A  G +     +L  +     E +       H AA   H
Sbjct: 235 TPLALAASSGKIGVLAYILQRE---IHEPE-----CRHAAAHHHH 271

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 73.7 bits (181), Expect = 8e-16
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 29/140 (20%)

Query: 49  ETPLHISALL---GHLDFTKALLNHKPELA----------KELDSLKHSPLHLAAAEGHV 95
           +T L  + L    G  D    LL+   +            +++     + LH+A      
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 96  QIVKELLL--ANKDA-----------CLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
             V+ L+   A+  A                  G +PL LAA   +  +V  L       
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 143 ALVK---FHGDTVLHFKAEH 159
           A ++     G+TVLH     
Sbjct: 167 ADLRRQDSRGNTVLHALVAI 186

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.6 bits (173), Expect = 9e-15
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELA--KELDSLKHSPLHLAAAEGH---------VQI 97
           E PL ++A          L  +  + A  +  DS  ++ LH   A             ++
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 98  VKELLL------ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
              LL+       + +   + + DG  PL +AA  G++ + Q +I 
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 33/145 (22%)

Query: 48  RETPLHISA---LLGHLDFTKALLNHKPEL-AKELDSLKH--SPLHLAA---AEGHVQIV 98
           R     I +     G       LL HK  L  +E        + L  A    + G    +
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 99  KELLLANKDACLVA----------DQDGRIPLHLAAMRGRVEVVQELIS--AN------- 139
             LL   +    +              G+  LH+A  R     V+ L+   A+       
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 140 -----FDSALVKFHGDTVLHFKAEH 159
                 D     + G+  L   A  
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACT 150

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 49  ETPLHISAL---LGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL--L 103
           E    ++A+      LD    LL     +   + +  +    LAA  GH+ ++  L    
Sbjct: 93  EVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELA 151

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKA 157
             +   ++   +      LAA  G + V+  L        +A+++        + A
Sbjct: 152 PTEIMAMIQA-ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 7e-15
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 3/109 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLK-HSPLHLAAAEGHVQIVKELL--LAN 105
                ++A  GHL     L    P     +   + +    LAA  GH+ ++  L      
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
           +   ++  ++       A  RG   V+  L+      A  + H      
Sbjct: 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGE 237

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 11/153 (7%)

Query: 15  KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
            L++  +  +  SL TL   +++ +      ++ +    +     H +     L      
Sbjct: 28  NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLW---SD 84

Query: 75  AKELDSLKHSPLHLAAAEGH---VQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131
           A +          +AA  G    +  +  LL +++    V   +      LAA  G + V
Sbjct: 85  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHV 143

Query: 132 VQELIS--ANFDSALVKFHGDTVLHFKAE--HL 160
           +  L         A+++          AE  HL
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 13/90 (14%)

Query: 70  HKPELAKELDSLKHSPLHLAA---AEGHVQIVKELL-------LANKDACLVADQDGRIP 119
               + K         L        E  +  ++ LL       LA          D    
Sbjct: 266 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT---IPGDANEL 322

Query: 120 LHLAAMRGRVEVVQELISANFDSALVKFHG 149
           L LA   G       L+S     AL K + 
Sbjct: 323 LRLALRLGNQGACALLLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 11/94 (11%)

Query: 50  TPLHISA---LLGHLDFTKALLNHKPELA----KELDSLKHSPLHLAAAEGHVQIVKELL 102
             L           LD  + LL+     A      +    +  L LA   G+      LL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA-LL 338

Query: 103 LANKDACLVADQDGRIPLHLAAMRGRVEVVQELI 136
           L+      +   +     ++    GR+++    +
Sbjct: 339 LSIPSVLALTKANN---YYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 19/136 (13%), Positives = 34/136 (25%), Gaps = 40/136 (29%)

Query: 50  TPLHISALL-GHLDFTKALLNHKPELAKELD---------------------SLKHSPLH 87
                +A+  GH +    LL+    LA                            H    
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK 259

Query: 88  LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG---RVEVVQELISANFDSAL 144
           L+  +G   +V +               G   L     R     ++ ++ L+S     AL
Sbjct: 260 LSNPDGVFDLVTKS----------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 309

Query: 145 VKF-----HGDTVLHF 155
                     + +L  
Sbjct: 310 APTATIPGDANELLRL 325

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 13/139 (9%)

Query: 48  RETPLHISALLGHLDFTKALLNHKPELAKEL--DSLKHSPLHLAAAEGHVQIVKELLL-- 103
               +  +A+LG  +    L     E  + +   ++ +  L     E   +I   L+   
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 104 ANKDACLVADQDGRIPLHLAAMRGR------VEVVQELISANFDSALVKFHGDTVLHFKA 157
           A+  +     ++G          G        E+ +  +    D   +      V+    
Sbjct: 66  ADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 158 EHLSLCTQRLPSNYAAWLD 176
            +  +    +   Y     
Sbjct: 123 FNYFVDENEMIPLYKLIFS 141

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 13/106 (12%), Positives = 24/106 (22%), Gaps = 21/106 (19%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKEL----------DSLKHSPLHLAAAEGHVQIV 98
            T        G  D T        EL K                   +        V   
Sbjct: 76  TTLFFPLFQGGGNDITGTT-----ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN 130

Query: 99  K-----ELLLANKDACL-VADQDGRIPLHLAAMRGRVEVVQELISA 138
           +     +L+ +     L + D+ G   L       +   ++ +   
Sbjct: 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 18/159 (11%), Positives = 42/159 (26%), Gaps = 19/159 (11%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           +  A++ G+      L +           +++    L  +        +  L+N   ++ 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI- 68

Query: 76  KELDSLKHSPLHLAAAEGHVQIVK-----ELLL---ANKDACLVADQDGRIPLHLAAMRG 127
           K       +        G   I       ++ L   A+  A     +  +I +       
Sbjct: 69  KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL---YKPYKIVVFKNIFNY 125

Query: 128 RVEVVQE-------LISANFDSALVKFHGDTVLHFKAEH 159
            V+  +           +     +    G T L F    
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 6/64 (9%), Positives = 17/64 (26%), Gaps = 6/64 (9%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKE------LDSLKHSPLHLAAAEGHVQIVKELLL 103
             +  +     +D  + +  +K   ++        D    + L           +K +  
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

Query: 104 ANKD 107
             K 
Sbjct: 176 YIKK 179

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 7e-11
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGH---VQIVKELLLAN 105
            TPLH    + +L+  K L+ H        D++  S L  A    +       + LL   
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS 161
               ++ D   R  LH   +                SA  K++ D ++ +  +  +
Sbjct: 191 YPCLILEDSMNRTILHHIIITS---------GMTGCSAAAKYYLDILMGWIVKKQN 237

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 14/124 (11%)

Query: 49  ETPLHISALL-----------GHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQI 97
            T LH   +             +LD     +  K     +  + +               
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 98  VKELLLANKDACLV---ADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
           + E L        +    D +G   L++AA  G + +V  L+    D  +    G   + 
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 321

Query: 155 FKAE 158
           F A 
Sbjct: 322 FGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.3 bits (138), Expect = 6e-10
 Identities = 17/108 (15%), Positives = 33/108 (30%)

Query: 48  RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
            E  L         +   +L N       E  S      H++      ++         +
Sbjct: 63  LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 122

Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
             +  D+ G  PLH       +E+V+ L+    +       G++ L  
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.9 bits (137), Expect = 8e-10
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 6/136 (4%)

Query: 8   HDEDSTHKLYEASLRGSVRSLNTLMQSD---SLILRKTSLTSLRETPLHISALLGHLDFT 64
                 H L EA     +  L          +  +   +     ET LH++         
Sbjct: 126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 185

Query: 65  KA--LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHL 122
                L        +      + LH      + + + +LLL  K +  +A++ G  PL +
Sbjct: 186 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KLLLRGKASIEIANESGETPLDI 244

Query: 123 AAMRGRVEVVQELISA 138
           A         + L  A
Sbjct: 245 AKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 84  SPLHLAAAEGHVQIVK--ELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
           + LHLA        +   + L+ N          G   LH   +    E ++ L+     
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 142 SALVKFHGDTVLH 154
             +    G+T L 
Sbjct: 231 IEIANESGETPLD 243

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.0 bits (116), Expect = 4e-07
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 2   EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHL 61
           ++      +D+   L +A+   S+ +   L+Q+ + +       S    PLH + +LGH 
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV---NQADSAGRGPLHHATILGHT 281

Query: 62  DFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
                 L    +L    DS    PL +A    +  IV  L LA  
Sbjct: 282 GLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKM 325

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            TPL  +     L   + LL +   +  + DS    PLH A   GH  +   L L     
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLAC-LFLKRGAD 293

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFH 148
               D +GR PL +A      ++V  L  A    A     
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           +PL  A A   +    E LL N      AD  GR PLH A + G   +    +    D  
Sbjct: 237 TPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295

Query: 144 LVKFHGDTVLH 154
                G   L 
Sbjct: 296 ARDSEGRDPLT 306

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 48  RETPLHISALLGH---LDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA 104
            E  LH++  + +   L     ++ +   L     +  ++ LH AA       +K LLL 
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLK-LLLK 247

Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
            +      ++ G   L +A  +   E  + L  A
Sbjct: 248 GRALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 71  KPELAKELDSLKHSPLHLAAA---EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
           +P    +  + +   LHLA     +  + +V + ++ N         DG   LH AA+  
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLV-DFIIQNGGHLDAKAADGNTALHYAALYN 237

Query: 128 RVEVVQELISANFDSALVKFHGDTVLH 154
           + + ++ L+        V   G+T L 
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALD 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.7e-38  Score=249.23  Aligned_cols=214  Identities=19%  Similarity=0.109  Sum_probs=181.2

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      .+..|..|.||||+|+..|+.+++++|++.++.....+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            3678999999999999999999999999988874334667788999999999999999999999999998 888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCcc----------------------------------------------ccccCCCCCc
Q 025876           85 PLHLAAAEGHVQIVKELLLANKDA----------------------------------------------CLVADQDGRI  118 (247)
Q Consensus        85 ~l~~A~~~g~~~~~~~Ll~~~~~~----------------------------------------------~~~~~~~g~t  118 (247)
                      |||+|+..|+.+++++|+..++..                                              .+..+..|+|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            999999999999999999887541                                              2466889999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCcccccc-CCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhcccce
Q 025876          119 PLHLAAMRGRVEVVQELISANFDSALVKF-HGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVA  196 (247)
Q Consensus       119 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~  196 (247)
                      |||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.++. ...+..|.||||+|+..+....
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            99999999999999999999999999975 499999999999999999999887764 4556689999999999888888


Q ss_pred             eeccccCCChhhhHHhhhhhhhh
Q 025876          197 ILMMPSVGGITFFQESFAERSLI  219 (247)
Q Consensus       197 ~~~l~~~~~~~~~~~~~~~~~~~  219 (247)
                      +..|++.+............++.
T Consensus       241 v~~Ll~~ga~~~~~~~~g~tpl~  263 (282)
T 1oy3_D          241 ARLLRAHGAPEPEDGGDKLSPCS  263 (282)
T ss_dssp             HHHHHHTTCCCCCCC--------
T ss_pred             HHHHHHcCCCcCcCCCccccccc
Confidence            88877776665544444444444

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.9e-38  Score=247.00  Aligned_cols=222  Identities=18%  Similarity=0.111  Sum_probs=156.4

Q ss_pred             CCccccCCCCchHHHHHHHcC-------------CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHh
Q 025876            3 IGAREHDEDSTHKLYEASLRG-------------SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN   69 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g-------------~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~   69 (247)
                      +|+|.+|..|.||||+|+..|             +.+++++|++.++++..  ..|..|.||||+|+..|+.+++++|++
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~   78 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLE   78 (253)
T ss_dssp             -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            578899999999999999987             89999999999987643  235679999999999999999999999


Q ss_pred             cCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCC
Q 025876           70 HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG  149 (247)
Q Consensus        70 ~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g  149 (247)
                      .|+++ +..+..|.||||+|+..|+.+++++|++.++...+..+..|+||||+|+..|+.+++++|++.|++++..+..|
T Consensus        79 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  157 (253)
T 1yyh_A           79 ASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  157 (253)
T ss_dssp             TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred             cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence            99998 88899999999999999999999999999884447889999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhhhhh
Q 025876          150 DTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAERSLI  219 (247)
Q Consensus       150 ~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~  219 (247)
                      .||||+|+..|+.+++++|++.+... ..+..|.||||+|+..+....+..|++.         .|.+++..+...+...
T Consensus       158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~  237 (253)
T 1yyh_A          158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD  237 (253)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHH
Confidence            99999999999999999888877644 4556899999999988887777665543         4566667777766666


Q ss_pred             hhccccCC
Q 025876          220 VVTEEVDY  227 (247)
Q Consensus       220 ~~~~~~~~  227 (247)
                      ++..+...
T Consensus       238 i~~~l~~~  245 (253)
T 1yyh_A          238 IVRLLDLE  245 (253)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            66554443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.8e-37  Score=244.46  Aligned_cols=196  Identities=24%  Similarity=0.241  Sum_probs=179.4

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      ..+.+|..|.||||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~  126 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWH  126 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS---CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCC
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCC
Confidence            45678899999999999999999999999999876   556778999999999999999999999999998 88899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC  163 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  163 (247)
                      ||||+|+..|+.+++++|++.++++ + .+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  204 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA  204 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            9999999999999999999999988 3 3456999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccccccccCCccchhhHHHhhcccceeeccccCCC
Q 025876          164 TQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGG  205 (247)
Q Consensus       164 ~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  205 (247)
                      ++++|++.+.....+..|.||||+|+..+....+..|++.+.
T Consensus       205 ~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  246 (285)
T 3d9h_A          205 CVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA  246 (285)
T ss_dssp             HHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999988877778899999999999888777777665543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.1e-36  Score=236.21  Aligned_cols=198  Identities=21%  Similarity=0.218  Sum_probs=179.1

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      ++.+.+|..|.||||+|+..|+.+++++|++.|.++   +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g   77 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEG   77 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTS
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCC
Confidence            678899999999999999999999999999999877   556677999999999999999999999999987 7889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||||+|+..|+.+++++|++.+....+..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999998444478899999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCC
Q 025876          163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVG  204 (247)
Q Consensus       163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  204 (247)
                      +++++|++.+... ..+..|.||+|+|+..+....+..|++.+
T Consensus       158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  200 (237)
T 3b7b_A          158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD  200 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence            9999998877644 45668999999999888777776665443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.4e-36  Score=222.43  Aligned_cols=158  Identities=34%  Similarity=0.455  Sum_probs=147.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG   93 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g   93 (247)
                      +.|+.||+.|+.++|++|++.|+++   +..|..|.||||+|+..++.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence            4799999999999999999999987   567788999999999999999999999999998 889999999999999999


Q ss_pred             CHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876           94 HVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus        94 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                      +.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|++.|+
T Consensus        82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999998 7899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q 025876          174 WLD  176 (247)
Q Consensus       174 ~~~  176 (247)
                      ..+
T Consensus       161 ~ie  163 (169)
T 4gpm_A          161 WLE  163 (169)
T ss_dssp             ---
T ss_pred             CcC
Confidence            764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.3e-36  Score=231.40  Aligned_cols=194  Identities=16%  Similarity=0.126  Sum_probs=176.2

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                      .|..|.||||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.+....+..+..|.||||
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   97 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI   97 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH
Confidence            3788999999999999999999999999877   5567789999999999999999999999998444888999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876           88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL  167 (247)
Q Consensus        88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  167 (247)
                      +|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  176 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV  176 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHH
Confidence            999999999999999999998 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc-cccCCccchhhHHHhhcccceeeccccCCC
Q 025876          168 PSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVGG  205 (247)
Q Consensus       168 l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  205 (247)
                      |++.++.. ..+..|.||+|+|+..+....+..|++.+.
T Consensus       177 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          177 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            98887644 455689999999998888777776665544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.6e-36  Score=234.44  Aligned_cols=215  Identities=20%  Similarity=0.182  Sum_probs=178.6

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHh----cCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCC
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQ----SDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL   81 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~----~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~   81 (247)
                      +.+|.+|.||||+|+..|+.+++++|++    .+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~   78 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRH   78 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCC
Confidence            5789999999999999999999999997    45555   556777999999999999999999999999987 788999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCC----ccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccc-cCCCcHHHHH
Q 025876           82 KHSPLHLAAAEGHVQIVKELLLANK----DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFK  156 (247)
Q Consensus        82 g~t~l~~A~~~g~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A  156 (247)
                      |.||||+|+..|+.+++++|+..++    ++ +..+..|+||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA  157 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Confidence            9999999999999999999999987    55 6788899999999999999999999999999999998 8899999999


Q ss_pred             HhcCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhhhhhhhcccc
Q 025876          157 AEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAERSLIVVTEEV  225 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~  225 (247)
                      +..++.+++++|++.+.. ...+..|.||+|+|+..+....+..|++.         .|.+++..+...+...+++.+.
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~  236 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA  236 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence            999999999999887764 44566899999999988887777665543         3444445555555555555443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.1e-36  Score=233.98  Aligned_cols=193  Identities=23%  Similarity=0.202  Sum_probs=170.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhc-CchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch----hcccCCCCcH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQS-DSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA----KELDSLKHSP   85 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~----~~~~~~g~t~   85 (247)
                      .|.||||+|+..|+.+++++|++. +.++   +..|..|.||||+|+..|+.+++++|++.++++.    +..|..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV---HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence            489999999999999999999998 7665   5567889999999999999999999999998753    3456789999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCccccccCC-------------CCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcH
Q 025876           86 LHLAAAEGHVQIVKELLLANKDACLVADQ-------------DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV  152 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~  152 (247)
                      ||+|+..|+.+++++|++.++++ +..+.             .|+||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            99999999999999999999988 45444             79999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCccee----eccccccccc-------cccCCccchhhHHHhhcccceeeccccCCChh
Q 025876          153 LHFKAEHLSLCTQ----RLPSNYAAWL-------DWTLSICYPKHLTIETRGAVAILMMPSVGGIT  207 (247)
Q Consensus       153 l~~A~~~~~~~~~----~~l~~~~~~~-------~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  207 (247)
                      ||+|+..++.+++    ++|++.++..       ..+..|.||+|+|++.+....+..|++.++..
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999999999888    8888877643       56778999999999988877777776655433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.8e-36  Score=236.44  Aligned_cols=193  Identities=17%  Similarity=0.131  Sum_probs=175.2

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876            7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL   86 (247)
Q Consensus         7 ~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   86 (247)
                      ..|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.+....+..+..|.|||
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L  128 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL  128 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHH
Confidence            35789999999999999999999999999877   556778999999999999999999999999844488899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceee
Q 025876           87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQR  166 (247)
Q Consensus        87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  166 (247)
                      |+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999998 788999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876          167 LPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       167 ~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      +|++.++.. ..+..|.||+|+|++.+....+..+...
T Consensus       208 ~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            998887644 4566899999999988887776665544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.9e-36  Score=232.92  Aligned_cols=186  Identities=24%  Similarity=0.265  Sum_probs=102.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      .+.++||.|+..|+.+.+++|+..++...  ...|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhh--hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence            34555666666666666665555544321  223444556666666666666666665555554 455555556666666


Q ss_pred             hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876           91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      ..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            556556666555555555 4555555566666665555556666655555555555555566666655555555555554


Q ss_pred             cccc-ccccCCccchhhHHHhhcccceeecc
Q 025876          171 YAAW-LDWTLSICYPKHLTIETRGAVAILMM  200 (247)
Q Consensus       171 ~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l  200 (247)
                      .+.. ...+..|.||+|+|+..+....+..|
T Consensus       161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  191 (231)
T 3aji_A          161 YKASTNIQDTEGNTPLHLACDEERVEEAKFL  191 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            4432 22333555566665555544444443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.3e-36  Score=243.55  Aligned_cols=199  Identities=21%  Similarity=0.181  Sum_probs=177.4

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus        49 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g  124 (351)
T 3utm_A           49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQ  124 (351)
T ss_dssp             TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTC
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            567888999999999999999999999999999877   556778999999999999999999999999998 8889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccc---------------------------------------------------
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLV---------------------------------------------------  111 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~---------------------------------------------------  111 (247)
                      .||||+|+..|+.+++++|+++|+++ +.                                                   
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  203 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII  203 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc
Confidence            99999999999999999999998876 32                                                   


Q ss_pred             ---cCCCCCcHHHHHHhc---CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccch
Q 025876          112 ---ADQDGRIPLHLAAMR---GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYP  184 (247)
Q Consensus       112 ---~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~p  184 (247)
                         .+..|+||||+|+..   +..+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+... ..+..|.||
T Consensus       204 ~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~  283 (351)
T 3utm_A          204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA  283 (351)
T ss_dssp             TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence               245678999999998   6689999999999999999999999999999999999999998887644 466689999


Q ss_pred             hhHHHhhcccceeeccccCCCh
Q 025876          185 KHLTIETRGAVAILMMPSVGGI  206 (247)
Q Consensus       185 l~~a~~~~~~~~~~~l~~~~~~  206 (247)
                      ||+|+..+....+..|++.+..
T Consensus       284 L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          284 LHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999888888777665443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.2e-36  Score=231.36  Aligned_cols=196  Identities=17%  Similarity=0.083  Sum_probs=174.6

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCC----cchhcc
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKP----ELAKEL   78 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~----~~~~~~   78 (247)
                      .+++.+|..|.||||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.+.    ++ +..
T Consensus        37 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~  112 (241)
T 1k1a_A           37 RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EAR  112 (241)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCC
T ss_pred             CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-ccc
Confidence            467888999999999999999999999999999877   5557789999999999999999999999987    54 778


Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHH
Q 025876           79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA  157 (247)
Q Consensus        79 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~  157 (247)
                      +..|.||||+|+..|+.+++++|++.++++ +..+ ..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus       113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  191 (241)
T 1k1a_A          113 NYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS  191 (241)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             CcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            899999999999999999999999999998 4555 88999999999999999999999999999999999999999999


Q ss_pred             hcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876          158 EHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      ..++.+++++|++.++.. ..+..|.||+|+|+..+....+..+...
T Consensus       192 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             HcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            999999999998887654 4566899999999987776666655543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.9e-36  Score=241.41  Aligned_cols=199  Identities=19%  Similarity=0.165  Sum_probs=177.5

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      -+++.+|..|.||||+|+..|+.+++++|++.|+++   +..+  |.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus        22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g   95 (285)
T 3kea_A           22 KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK---NLLE--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKG   95 (285)
T ss_dssp             TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG---SCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCC
Confidence            367899999999999999999999999999999877   3334  999999999999999999999999998 8889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCC-CcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCC
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDG-RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS  161 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  161 (247)
                      .||||+|+..|+.+++++|++.|+++ +..+..| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..|+
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~  173 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGH  173 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcCh
Confidence            99999999999999999999999998 7888889 79999999999999999999998876332 288999999999999


Q ss_pred             cceeeccccccccc-cccCCccch-hhHHHhhcccceeeccccCCChhhh
Q 025876          162 LCTQRLPSNYAAWL-DWTLSICYP-KHLTIETRGAVAILMMPSVGGITFF  209 (247)
Q Consensus       162 ~~~~~~l~~~~~~~-~~~~~g~~p-l~~a~~~~~~~~~~~l~~~~~~~~~  209 (247)
                      .+++++|++.++.. ..+..|.|| ||+|+..+....+..|++.+.....
T Consensus       174 ~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred             HHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999998877654 455589997 9999999998888888877655444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.2e-36  Score=247.28  Aligned_cols=197  Identities=14%  Similarity=0.116  Sum_probs=106.9

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch-------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA-------   75 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~-------   75 (247)
                      ++++..|..|.||||+|+..|+.+++++|++.|.++   +..|..|.||||+|+..|+.+++++|++.|+.+.       
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~   87 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP---TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP   87 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH
Confidence            345556666666666666666666666666666554   3445556666666666666666666666665331       


Q ss_pred             ---------------------------hc-----------------ccCCCCcHHHHHHhcC--CHHHHHHHHHcCCccc
Q 025876           76 ---------------------------KE-----------------LDSLKHSPLHLAAAEG--HVQIVKELLLANKDAC  109 (247)
Q Consensus        76 ---------------------------~~-----------------~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~  109 (247)
                                                 +.                 .+..|.||||+|+..|  +.+++++|++.|+++ 
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-  166 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-  166 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-
Confidence                                       11                 3444555555555555  555555555555554 


Q ss_pred             cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC-----ccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccc
Q 025876          110 LVADQDGRIPLHLAAMRGRVEVVQELISANFD-----SALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICY  183 (247)
Q Consensus       110 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~  183 (247)
                      +..+..|+||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|++.++.. ..+..|.|
T Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  246 (364)
T 3ljn_A          167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV  246 (364)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            44555555555555555555555555555554     5555555555555555555555555555444322 23334555


Q ss_pred             hhhHHHhhcccceeeccccC
Q 025876          184 PKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       184 pl~~a~~~~~~~~~~~l~~~  203 (247)
                      |||+|+..+....+..|+..
T Consensus       247 pL~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          247 PLYLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             HHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHhChHHHHHHHHHc
Confidence            55555555554444444444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-35  Score=248.84  Aligned_cols=220  Identities=26%  Similarity=0.301  Sum_probs=154.5

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..+..|.||||+|+..|+.+++++|++.+.++   +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus         5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g   80 (437)
T 1n11_A            5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDD   80 (437)
T ss_dssp             ----------CCHHHHHHHHTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTS
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCC
Confidence            356777888888888888888888888888887766   445566888888888888888888888888876 7778888


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+++.+..+..|.||||+|+..|+.
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  159 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV  159 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence            88888888888888888888888777 56777788888888888888888888777777777777777777777777777


Q ss_pred             ceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhhhhhhhccccCC
Q 025876          163 CTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAERSLIVVTEEVDY  227 (247)
Q Consensus       163 ~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  227 (247)
                      +++++|++.+.. ...+..|.||||+|+..+....+..|+..         .|.+++..+...+...++..++..
T Consensus       160 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  234 (437)
T 1n11_A          160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY  234 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            777777666553 33344677777777776666665555433         334555556555555555554443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.5e-35  Score=228.55  Aligned_cols=190  Identities=24%  Similarity=0.244  Sum_probs=172.7

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.+..+   +..+..|.||||+|+..|+.+++++|++.+....+..+..|
T Consensus        35 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  111 (237)
T 3b7b_A           35 ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG  111 (237)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS
T ss_pred             CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC
Confidence            467888899999999999999999999999999876   55677799999999999999999999999943338889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.
T Consensus       112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  190 (237)
T 3b7b_A          112 WTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY  190 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            99999999999999999999999998 78899999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccccccc-cccCCccchhhHHHhhcccce
Q 025876          163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVA  196 (247)
Q Consensus       163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~  196 (247)
                      +++++|++.+... ..+..|.||+|+|+..+....
T Consensus       191 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          191 DCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             hHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence            9999998877644 456689999999997766543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3e-35  Score=233.53  Aligned_cols=184  Identities=20%  Similarity=0.165  Sum_probs=154.6

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc----------
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL----------   74 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~----------   74 (247)
                      ++.+|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.++..          
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT  114 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhh
Confidence            6788999999999999999999999999999887   566778999999999999999999999987541          


Q ss_pred             ------------------------------------hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC-CCCC
Q 025876           75 ------------------------------------AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD-QDGR  117 (247)
Q Consensus        75 ------------------------------------~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~  117 (247)
                                                          .+..+..|.||||+|+..|+.+++++|++.|+++ +..+ ..|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~  193 (282)
T 1oy3_D          115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGR  193 (282)
T ss_dssp             -----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCC
T ss_pred             cccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCc
Confidence                                                2567889999999999999999999999999998 4555 4599


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhc
Q 025876          118 IPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETR  192 (247)
Q Consensus       118 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~  192 (247)
                      ||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++++.. ..+..|.||++++....
T Consensus       194 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            9999999999999999999999999999999999999999999999999999888754 45558999999998544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.6e-36  Score=235.34  Aligned_cols=201  Identities=20%  Similarity=0.167  Sum_probs=169.8

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchh-hhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLI-LRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      +..|..|.||||+|+..|+.+++++|++.+... ...+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   80 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT   80 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence            567899999999999999999999999887531 122556777999999999999999999999999998 888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCcc-----ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcccccc-CCCcHHHHHHh
Q 025876           85 PLHLAAAEGHVQIVKELLLANKDA-----CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF-HGDTVLHFKAE  158 (247)
Q Consensus        85 ~l~~A~~~g~~~~~~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~  158 (247)
                      |||+|+..|+.+++++|+..++..     .+..+..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999998642     356788999999999999999999999999999999987 99999999999


Q ss_pred             cCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccCCChh
Q 025876          159 HLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSVGGIT  207 (247)
Q Consensus       159 ~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  207 (247)
                      .++.+++++|++.++. ...+..|.||+|+|+..+....+..|++.+...
T Consensus       161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             cCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            9999999999888764 445568999999999887777777776665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.5e-35  Score=220.04  Aligned_cols=191  Identities=17%  Similarity=0.148  Sum_probs=169.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                      +..+.|+||.|+..|+.+.+++|+..+. ++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~   77 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV---DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYL   77 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            3568899999999999999999999887 44   556777999999999999999999999999998 888999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCccccccCCCcHHHHHHhcCC-----
Q 025876           88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDSALVKFHGDTVLHFKAEHLS-----  161 (247)
Q Consensus        88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~-----  161 (247)
                      +|+..|+.+++++|+..+....+..+..|.||||+|+..|+.+++++|++++ ++++..+..|.||||+|+..++     
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence            9999999999999996655444789999999999999999999999999998 9999999999999999999998     


Q ss_pred             cceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876          162 LCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       162 ~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      .+++++|++.+... ..+..|.||+|+|+..+....+..|++.
T Consensus       158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            89999998877644 4566899999999998887777666554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.8e-35  Score=225.11  Aligned_cols=187  Identities=22%  Similarity=0.174  Sum_probs=160.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC--CcchhcccCCCCcHHHHH
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK--PELAKELDSLKHSPLHLA   89 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~A   89 (247)
                      |.||||+|+..|+.+++++|++.++....  ..|..|.||||+|+..|+.+++++|++.+  .++....+..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            68999999999999999999998886533  35677999999999999999999999998  555232788999999999


Q ss_pred             HhcCCHHHHHHHHHcC--CccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876           90 AAEGHVQIVKELLLAN--KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL  167 (247)
Q Consensus        90 ~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  167 (247)
                      +..|+.+++++|++.+  .++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999988  666 6788899999999999999999999999999999999999999999999999999998


Q ss_pred             ccccc-c-cccccCCccchhhHHHhhcccceeeccc
Q 025876          168 PSNYA-A-WLDWTLSICYPKHLTIETRGAVAILMMP  201 (247)
Q Consensus       168 l~~~~-~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~  201 (247)
                      |++.+ . ....+..|.||+|+|+..+....+..|+
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            88877 4 3445668999999999887776666665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-36  Score=235.29  Aligned_cols=184  Identities=23%  Similarity=0.234  Sum_probs=143.9

Q ss_pred             ccccCCCCchHHHHHHHcCCHH-HHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            5 AREHDEDSTHKLYEASLRGSVR-SLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~-~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      ++..|..+.|||+.|+..+..+ ++++|++.|+++   +..|.+|.||||+|+..|+.+++++|++.++++ +..+..|.
T Consensus        45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~  120 (269)
T 4b93_B           45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV---NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQA  120 (269)
T ss_dssp             ------------------------------CCCCT---TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCC
T ss_pred             ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCC
Confidence            4567778999999999988765 789999999887   566788999999999999999999999999998 88899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC  163 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  163 (247)
                      ||+|+|+..++.+++++|+..|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~  199 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF  199 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             CccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHH
Confidence            9999999999999999999999998 789999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccc-ccccCCccchhhHHHhhcc
Q 025876          164 TQRLPSNYAAW-LDWTLSICYPKHLTIETRG  193 (247)
Q Consensus       164 ~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~  193 (247)
                      ++++|++.++. ...+..|+||||+|++++.
T Consensus       200 ~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          200 VVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999888764 4566689999999986543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.9e-34  Score=222.20  Aligned_cols=183  Identities=19%  Similarity=0.177  Sum_probs=165.1

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC--CcchhcccCCCC
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK--PELAKELDSLKH   83 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~   83 (247)
                      +..|..|.||||+|+..|+.+++++|++.++........+..|.||||+|+..|+.+++++|++.|  .++ +..+..|.
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~  108 (228)
T 2dzn_A           30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGV  108 (228)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCC
Confidence            347889999999999999999999999999544322226677999999999999999999999998  666 77899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCccccccCCCcHHHHHHhcCCc
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      ||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.| ++++..|..|.||||+|+..++.
T Consensus       109 t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~  187 (228)
T 2dzn_A          109 TCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG  187 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999998 788999999999999999999999999999 99999999999999999999999


Q ss_pred             ceeeccc-cccc-cccccCCccchhhHHHh
Q 025876          163 CTQRLPS-NYAA-WLDWTLSICYPKHLTIE  190 (247)
Q Consensus       163 ~~~~~l~-~~~~-~~~~~~~g~~pl~~a~~  190 (247)
                      +++++|+ +.++ ....+..|.||+|+|+.
T Consensus       188 ~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             HHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            9999888 6665 44566689999999974

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-34  Score=227.73  Aligned_cols=188  Identities=19%  Similarity=0.146  Sum_probs=108.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL   88 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~   88 (247)
                      +..|.||||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~  111 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFME  111 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHH
Confidence            445566666666666666666666665544   333445666666666666666666666666555 5555666666666


Q ss_pred             HHhcCCHHHHHHHHHcCCcccccc----------CCCCCcHHHHHHhcCcHHHHHHHHHc-CCCccccccCCCcHHHHHH
Q 025876           89 AAAEGHVQIVKELLLANKDACLVA----------DQDGRIPLHLAAMRGRVEVVQELISA-NFDSALVKFHGDTVLHFKA  157 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~  157 (247)
                      |+..|+.+++++|++.++++ +..          +..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+
T Consensus       112 A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~  190 (285)
T 1wdy_A          112 AAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL  190 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            66666666666666665555 222          45556666666666666666666654 6666666666666666666


Q ss_pred             hcCC----cceeeccccccccc-cccCCccchhhHHHhhcccceeeccc
Q 025876          158 EHLS----LCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMP  201 (247)
Q Consensus       158 ~~~~----~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~  201 (247)
                      ..++    .+++++|++.+... ..+..|.||||+|+..+....+..|+
T Consensus       191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  239 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            6555    45555555544422 23345666666666555544444433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-34  Score=241.94  Aligned_cols=220  Identities=24%  Similarity=0.270  Sum_probs=184.7

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.++++   +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus        38 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g  113 (437)
T 1n11_A           38 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV---NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAG  113 (437)
T ss_dssp             CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS---SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCC
Confidence            467788889999999999999999999999998876   556777999999999999999999999999987 7888999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||||+|+..|+.+++++|+..+.+. ...+..|+||||+|+..|+.+++++|++++++++..+..|.||||+|+..++.
T Consensus       114 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  192 (437)
T 1n11_A          114 HTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL  192 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999998887 57788899999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccccccc-cccCCccchhhHHHhhcccceeecccc---------CCChhhhHHhhhhhhhhhhccccCC
Q 025876          163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPS---------VGGITFFQESFAERSLIVVTEEVDY  227 (247)
Q Consensus       163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  227 (247)
                      +++++|+..+... ..+..|.||+|+|+..+....+..|+.         ..|.+++..+...+...++..++..
T Consensus       193 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  267 (437)
T 1n11_A          193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK  267 (437)
T ss_dssp             HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            9999888776543 444578889999888777666665543         3456667777777666666655543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=231.32  Aligned_cols=180  Identities=23%  Similarity=0.220  Sum_probs=165.4

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++.+|..|.||||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.++++ +. +..|
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g  157 (285)
T 3d9h_A           83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDL  157 (285)
T ss_dssp             CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCC
Confidence            467889999999999999999999999999999877   566788999999999999999999999999887 43 4559


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|++.|++++. +..|.||||+|+..++.
T Consensus       158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~  235 (285)
T 3d9h_A          158 ASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE  235 (285)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999998 78999999999999999999999999999999985 88999999999999999


Q ss_pred             ceeecccccccc-ccccCCccchhhHHH
Q 025876          163 CTQRLPSNYAAW-LDWTLSICYPKHLTI  189 (247)
Q Consensus       163 ~~~~~l~~~~~~-~~~~~~g~~pl~~a~  189 (247)
                      +++++|++.++. ...+..|.||+|+|+
T Consensus       236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          236 ELACLLMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence            999999887764 456668999999998

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.6e-34  Score=223.12  Aligned_cols=191  Identities=21%  Similarity=0.239  Sum_probs=174.0

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      .+..|..|.||||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.|
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t  108 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCT  108 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC---CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            5677889999999999999999999999999876   556778999999999999999999999999998 888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcce
Q 025876           85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCT  164 (247)
Q Consensus        85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  164 (247)
                      |||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++
T Consensus       109 ~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  187 (231)
T 3aji_A          109 PLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE  187 (231)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999999999998 7889999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccccccc-cccCCccchhhHHHhhcccceeecc
Q 025876          165 QRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMM  200 (247)
Q Consensus       165 ~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l  200 (247)
                      +++|++.+... ..+..|.||+|+|+..+.......|
T Consensus       188 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL  224 (231)
T 3aji_A          188 AKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLA  224 (231)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence            99998887654 4556899999999876655544444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.1e-35  Score=231.71  Aligned_cols=196  Identities=21%  Similarity=0.112  Sum_probs=166.7

Q ss_pred             CCchHHHHHHHcCCHH----HHHHHHhcCchhhhcc-ccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchh------
Q 025876           11 DSTHKLYEASLRGSVR----SLNTLMQSDSLILRKT-SLTSLRETPLHISALL---GHLDFTKALLNHKPELAK------   76 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~----~~~~Ll~~~~~~~~~~-~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~------   76 (247)
                      .|+||||.|+..|+.+    ++++|++.+.++.... ..|..|.||||+|+..   |+.+++++|++.|+++..      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4899999999999997    5677777888773200 1577899999999999   999999999998876521      


Q ss_pred             ----cccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCC-------------CCcHHHHHHhcCcHHHHHHHHH--
Q 025876           77 ----ELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD-------------GRIPLHLAAMRGRVEVVQELIS--  137 (247)
Q Consensus        77 ----~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~--  137 (247)
                          ..|..|.||||+|+..|+.+++++|++.|+++ +..+..             |+||||+|+..|+.+++++|++  
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                13467999999999999999999999999998 566665             9999999999999999999999  


Q ss_pred             -cCCCccccccCCCcHHHHHHh--cCCcc-------eeeccccccccc--------cccCCccchhhHHHhhcccceeec
Q 025876          138 -ANFDSALVKFHGDTVLHFKAE--HLSLC-------TQRLPSNYAAWL--------DWTLSICYPKHLTIETRGAVAILM  199 (247)
Q Consensus       138 -~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~l~~~~~~~--------~~~~~g~~pl~~a~~~~~~~~~~~  199 (247)
                       .|++++..|..|+||||+|+.  .++.+       ++++|++.++..        ..+..|.||+|+|+..+....+..
T Consensus       160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  239 (256)
T 2etb_A          160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH  239 (256)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHH
Confidence             999999999999999999998  77777       999998887654        566789999999998888777777


Q ss_pred             cccCCChh
Q 025876          200 MPSVGGIT  207 (247)
Q Consensus       200 l~~~~~~~  207 (247)
                      |++.+...
T Consensus       240 Ll~~g~~~  247 (256)
T 2etb_A          240 ILQREFSG  247 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHhCCCCC
Confidence            77664443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-35  Score=233.96  Aligned_cols=205  Identities=18%  Similarity=0.129  Sum_probs=168.8

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhc----Cchhhhcc-ccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcc-
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQS----DSLILRKT-SLTSLRETPLHISALL---GHLDFTKALLNHKPEL-   74 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~----~~~~~~~~-~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~-   74 (247)
                      ..+..|..|.|+||.|+..|+.++++.|++.    +..+.... ..|..|.||||+|+..   |+.+++++|++.|++. 
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence            4567889999999999999999999998874    33332111 2367799999999987   9999999999987642 


Q ss_pred             -----hhc----ccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCC--------------CCCcHHHHHHhcCcHHH
Q 025876           75 -----AKE----LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ--------------DGRIPLHLAAMRGRVEV  131 (247)
Q Consensus        75 -----~~~----~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~~~~~~  131 (247)
                           .+.    .|..|.||||+|+..|+.+++++|++.|+++ +..+.              .|+||||+|+..|+.++
T Consensus        85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                 121    4678999999999999999999999999998 56665              79999999999999999


Q ss_pred             HHHHHH---cCCCccccccCCCcHHHHHHhcCC---------cceeecccccccccc--------ccCCccchhhHHHhh
Q 025876          132 VQELIS---ANFDSALVKFHGDTVLHFKAEHLS---------LCTQRLPSNYAAWLD--------WTLSICYPKHLTIET  191 (247)
Q Consensus       132 v~~Ll~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~l~~~~~~~~--------~~~~g~~pl~~a~~~  191 (247)
                      +++|++   .|++++..|..|+||||+|+..++         .+++++|++.++...        .+..|.||||+|+..
T Consensus       164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            999999   999999999999999999999888         688999998887664        677899999999998


Q ss_pred             cccceeeccccCCChhhh
Q 025876          192 RGAVAILMMPSVGGITFF  209 (247)
Q Consensus       192 ~~~~~~~~l~~~~~~~~~  209 (247)
                      +....+..|++.+..++.
T Consensus       244 g~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          244 GKIGVLAYILQREIHEPE  261 (273)
T ss_dssp             TCHHHHHHHHHHHTC---
T ss_pred             ChHHHHHHHHHCCCCCch
Confidence            888888888777664443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-34  Score=238.29  Aligned_cols=198  Identities=18%  Similarity=0.144  Sum_probs=176.6

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC---Ccchhccc
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK---PELAKELD   79 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~---~~~~~~~~   79 (247)
                      .++|.+|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.+   .++ +..+
T Consensus       157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d  232 (373)
T 2fo1_E          157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELD  232 (373)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCC
T ss_pred             CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcC
Confidence            467889999999999999999999999999999887   556778999999999999999999999987   565 7789


Q ss_pred             CCCCcHHHHHHhcC---CHHHHHHHHHcCCcccc-------ccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCccccccC
Q 025876           80 SLKHSPLHLAAAEG---HVQIVKELLLANKDACL-------VADQDGRIPLHLAAMRGRVEVVQELISAN-FDSALVKFH  148 (247)
Q Consensus        80 ~~g~t~l~~A~~~g---~~~~~~~Ll~~~~~~~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~  148 (247)
                      ..|.||||+|+..+   +.+++++|++.++++..       ..+..|+||||+|+..|+.+++++|++++ ++++..|..
T Consensus       233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~  312 (373)
T 2fo1_E          233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED  312 (373)
T ss_dssp             TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC
Confidence            99999999999998   89999999999988721       25778999999999999999999999875 999999999


Q ss_pred             CCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCC
Q 025876          149 GDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVG  204 (247)
Q Consensus       149 g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  204 (247)
                      |.||||+|+..|+.+++++|++.++.. ..+..|.||+|+|+..+....+..|+..+
T Consensus       313 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999998887754 45668999999999888877776666543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.9e-34  Score=225.64  Aligned_cols=200  Identities=19%  Similarity=0.130  Sum_probs=179.2

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcc----
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKEL----   78 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~----   78 (247)
                      .+++.+|..|.||||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +..    
T Consensus        63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~  138 (285)
T 1wdy_A           63 ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTK  138 (285)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCC
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccH
Confidence            467788999999999999999999999999999877   556778999999999999999999999999887 444    


Q ss_pred             ------cCCCCcHHHHHHhcCCHHHHHHHHHc-CCccccccCCCCCcHHHHHHhcCc----HHHHHHHHHcCCCcccccc
Q 025876           79 ------DSLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAMRGR----VEVVQELISANFDSALVKF  147 (247)
Q Consensus        79 ------~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~  147 (247)
                            +..|.||||+|+..|+.+++++|++. +.++ +..+..|+||||+|+..++    .+++++|+++|++++..+.
T Consensus       139 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~  217 (285)
T 1wdy_A          139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE  217 (285)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT
T ss_pred             HHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCC
Confidence                  78899999999999999999999998 7777 7889999999999999999    9999999999999999999


Q ss_pred             CCCcHHHHHHhcCCcceeecccc-ccc-cccccCCccchhhHHHhhcccceeeccccCCChh
Q 025876          148 HGDTVLHFKAEHLSLCTQRLPSN-YAA-WLDWTLSICYPKHLTIETRGAVAILMMPSVGGIT  207 (247)
Q Consensus       148 ~g~t~l~~A~~~~~~~~~~~l~~-~~~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  207 (247)
                      .|.||||+|+..++.+++++|++ .+. ....+..|.||+|+|+..+....+..|++.+...
T Consensus       218 ~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            99999999999999999998887 554 4556678999999999988877777777665543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.1e-35  Score=230.03  Aligned_cols=209  Identities=18%  Similarity=0.125  Sum_probs=154.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhh-----ccccccCCCcHHHHHHhcCCH-HHHHHHHhcCCcchhccc
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILR-----KTSLTSLRETPLHISALLGHL-DFTKALLNHKPELAKELD   79 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~-----~~~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~~~~~~~~~~   79 (247)
                      ..+|..+.++|+.|+..|+.++|++|++.+.....     .+..+..+.||||.|+..+.. .++++|++.|+++ +..|
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d   83 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTS   83 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCC
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcC
Confidence            45677889999999999999999999998875321     234556699999999988776 4889999999998 8899


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhc
Q 025876           80 SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH  159 (247)
Q Consensus        80 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~  159 (247)
                      ..|.||||+|+..|+.+++++|+..++++ +..+..|.||+++|+..++.+++++|++.|++++..|..|+||||+|+..
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            99999999999999999999999999998 78899999999999999999999999999999999999999999999999


Q ss_pred             CCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhh
Q 025876          160 LSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAER  216 (247)
Q Consensus       160 ~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~  216 (247)
                      |+.+++++|++.++. ...+..|.||||+|+..+....+..|++.         .|.+++..+..+.
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            999999999887764 45566899999999998888777776544         4555555554443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.3e-34  Score=215.54  Aligned_cols=164  Identities=17%  Similarity=0.141  Sum_probs=154.5

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      ..|.+|..|.||||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~  102 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGK  102 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCC
Confidence            45778999999999999999999999999998876   556777999999999999999999999999997 88899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC  163 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  163 (247)
                      ||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence            9999999999999999999999998 789999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccc
Q 025876          164 TQRLPSNYA  172 (247)
Q Consensus       164 ~~~~l~~~~  172 (247)
                      ++++|++.+
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999988764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=217.45  Aligned_cols=218  Identities=19%  Similarity=0.241  Sum_probs=183.6

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      ++..|..+.++|+.|+..|+.+++++|++.+.++   +..+..|.||||+|+..|+.+++++|++.+..+....+..|.|
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST   78 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence            5667889999999999999999999999999876   5556779999999999999999999999999885566677999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCC-cc
Q 025876           85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS-LC  163 (247)
Q Consensus        85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~  163 (247)
                      |||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence            999999999999999999999988 6789999999999999999999999999999999999999999999996665 78


Q ss_pred             eeecccccccccc-ccC-CccchhhHHHhhcccceeecccc---------CCChhhhHHhhhhhhhhhhccccC
Q 025876          164 TQRLPSNYAAWLD-WTL-SICYPKHLTIETRGAVAILMMPS---------VGGITFFQESFAERSLIVVTEEVD  226 (247)
Q Consensus       164 ~~~~l~~~~~~~~-~~~-~g~~pl~~a~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~  226 (247)
                      ++++|.+.+.... .+. .|.||||+|+..+....+..|++         ..|.+++..+...+...++..+..
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            8888887776544 333 78999999998888777666544         344555666666655555554443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-34  Score=238.55  Aligned_cols=220  Identities=16%  Similarity=0.116  Sum_probs=188.3

Q ss_pred             CCccccC-CCCchHHHHHHHcCCHHHHHHHH--------hcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc
Q 025876            3 IGAREHD-EDSTHKLYEASLRGSVRSLNTLM--------QSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE   73 (247)
Q Consensus         3 ~~~~~~~-~~~~~~L~~A~~~g~~~~~~~Ll--------~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~   73 (247)
                      .+++..| ..|.||||+|+..|+.+++++|+        +.|.++   +..|..|.||||+|+..|+.+++++|++.|++
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v---n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  191 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRRRLVAYLMKAGAD  191 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC---cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence            3567788 78999999999999998888776        677776   56678899999999999999999999999999


Q ss_pred             chhcccCCCCcHHHHHHhcCCHHHHHHHHHcC---CccccccCCCCCcHHHHHHhcC---cHHHHHHHHHcCCCccc---
Q 025876           74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLAN---KDACLVADQDGRIPLHLAAMRG---RVEVVQELISANFDSAL---  144 (247)
Q Consensus        74 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~---~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~---  144 (247)
                      + +..+..|.||||+|+..|+.+++++|+..+   .++ +..+..|+||||+|+..+   +.+++++|+++|++++.   
T Consensus       192 ~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~  269 (373)
T 2fo1_E          192 P-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  269 (373)
T ss_dssp             S-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             C-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence            8 888999999999999999999999999987   566 678999999999999988   89999999999999886   


Q ss_pred             -----cccCCCcHHHHHHhcCCcceeecccccc--ccccccCCccchhhHHHhhcccceeecccc---------CCChhh
Q 025876          145 -----VKFHGDTVLHFKAEHLSLCTQRLPSNYA--AWLDWTLSICYPKHLTIETRGAVAILMMPS---------VGGITF  208 (247)
Q Consensus       145 -----~~~~g~t~l~~A~~~~~~~~~~~l~~~~--~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~---------~~~~~~  208 (247)
                           .+..|.||||+|+..|+.+++++|++.+  +....+..|.||||+|+..+....+..|+.         ..|.++
T Consensus       270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~  349 (373)
T 2fo1_E          270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA  349 (373)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred             cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence                 5678999999999999999999998654  455667789999999999888777776654         445567


Q ss_pred             hHHhhhhhhhhhhccccCC
Q 025876          209 FQESFAERSLIVVTEEVDY  227 (247)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~  227 (247)
                      +..+...+...++..+...
T Consensus       350 l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          350 RQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhc
Confidence            7777777766666655443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.7e-34  Score=227.05  Aligned_cols=199  Identities=19%  Similarity=0.101  Sum_probs=167.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHh----cCchhhhcc-ccccCCCcHHHHHH---hcCCHHHHHHHHhcCCcc------
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQ----SDSLILRKT-SLTSLRETPLHISA---LLGHLDFTKALLNHKPEL------   74 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~----~~~~~~~~~-~~~~~g~t~L~~A~---~~g~~~~~~~Ll~~~~~~------   74 (247)
                      +..++++||.|++.|+.+.++.|++    .+..+.... ..|..|.||||+|+   ..|+.+++++|++.|++.      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            5679999999999999996555554    777764332 22466999999999   679999999999987542      


Q ss_pred             ----hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC--------------CCCCcHHHHHHhcCcHHHHHHHH
Q 025876           75 ----AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD--------------QDGRIPLHLAAMRGRVEVVQELI  136 (247)
Q Consensus        75 ----~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll  136 (247)
                          ....|..|.||||+|+..|+.+++++|++.|+++ +..+              ..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                1334558999999999999999999999999998 5666              68999999999999999999999


Q ss_pred             H---cCCCccccccCCCcHHHHHHhcCC---------cceeeccccccccc--------cccCCccchhhHHHhhcccce
Q 025876          137 S---ANFDSALVKFHGDTVLHFKAEHLS---------LCTQRLPSNYAAWL--------DWTLSICYPKHLTIETRGAVA  196 (247)
Q Consensus       137 ~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~l~~~~~~~--------~~~~~g~~pl~~a~~~~~~~~  196 (247)
                      +   .|++++..|..|+||||+|+..++         .+++++|++.++..        ..+..|.||||+|+..+....
T Consensus       161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  240 (260)
T 3jxi_A          161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI  240 (260)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence            9   999999999999999999998877         68999998888754        467789999999998888777


Q ss_pred             eeccccCCChhh
Q 025876          197 ILMMPSVGGITF  208 (247)
Q Consensus       197 ~~~l~~~~~~~~  208 (247)
                      +..|+++++...
T Consensus       241 v~~Ll~~g~~~~  252 (260)
T 3jxi_A          241 FQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcc
Confidence            777776655443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3.6e-33  Score=206.18  Aligned_cols=169  Identities=21%  Similarity=0.215  Sum_probs=149.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHh
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA   91 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~   91 (247)
                      +.+|||.|+..|+.+++++|++.+....  +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence            4689999999999999999999988632  455777999999999999999999999999998 8889999999999999


Q ss_pred             cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876           92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus        92 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      .|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999998 78899999999999999999999999999999999999999999999999999999999888


Q ss_pred             cccc-cccCCccch
Q 025876          172 AAWL-DWTLSICYP  184 (247)
Q Consensus       172 ~~~~-~~~~~g~~p  184 (247)
                      +... ..+..|.||
T Consensus       158 ~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHSCC-------
T ss_pred             HHHHhcccCCCCCC
Confidence            7644 333355554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6e-33  Score=209.85  Aligned_cols=166  Identities=18%  Similarity=0.213  Sum_probs=152.5

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.|+++   +..+..|.||||+|+..|+.+++++|++.+....+..+..|
T Consensus        30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  106 (201)
T 3hra_A           30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI---NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG  106 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCC
Confidence            367889999999999999999999999999999887   55677899999999999999999999965543338889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcC-CccccccCCCCCcHHHHHHhcCc-----HHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876           83 HSPLHLAAAEGHVQIVKELLLAN-KDACLVADQDGRIPLHLAAMRGR-----VEVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      .||||+|+..|+.+++++|++.+ .++ +..+..|+||||+|+..+.     .+++++|+++|++++..|..|.||||+|
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  185 (201)
T 3hra_A          107 GNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA  185 (201)
T ss_dssp             CCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHH
Confidence            99999999999999999999999 555 7899999999999999887     9999999999999999999999999999


Q ss_pred             HhcCCcceeecccccc
Q 025876          157 AEHLSLCTQRLPSNYA  172 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~  172 (247)
                      +..++.+++++|+++|
T Consensus       186 ~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          186 NQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTCHHHHHHHHTCC
T ss_pred             HHcCCHhHHHHHHhcC
Confidence            9999999999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=4.5e-33  Score=204.70  Aligned_cols=160  Identities=22%  Similarity=0.234  Sum_probs=150.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      .|.||||.|+..|+.+++++|++.+..+   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI---NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            4789999999999999999999998776   566778999999999999999999999999988 888999999999999


Q ss_pred             hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876           91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      ..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++
T Consensus        78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999998 7889999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccc
Q 025876          171 YAAWL  175 (247)
Q Consensus       171 ~~~~~  175 (247)
                      +....
T Consensus       157 ~~~~~  161 (167)
T 3v31_A          157 HLLKL  161 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=8.9e-33  Score=203.61  Aligned_cols=159  Identities=30%  Similarity=0.423  Sum_probs=148.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL   88 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~   88 (247)
                      ...+.++|++|++.|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   86 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL   86 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence            446789999999999999999999999877   556778999999999999999999999999987 8889999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      |+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            99999999999999999998 78899999999999999999999999999999999999999999999999999999998


Q ss_pred             cccc
Q 025876          169 SNYA  172 (247)
Q Consensus       169 ~~~~  172 (247)
                      ++.|
T Consensus       166 ~~~G  169 (169)
T 2y1l_E          166 QKLN  169 (169)
T ss_dssp             HTC-
T ss_pred             HHcC
Confidence            8754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-32  Score=224.50  Aligned_cols=223  Identities=17%  Similarity=0.083  Sum_probs=139.9

Q ss_pred             CccccCC-CCchHHHHHHHcCCHHHHHHHHhcCchhhh------------------------------ccccccCCCcHH
Q 025876            4 GAREHDE-DSTHKLYEASLRGSVRSLNTLMQSDSLILR------------------------------KTSLTSLRETPL   52 (247)
Q Consensus         4 ~~~~~~~-~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~------------------------------~~~~~~~g~t~L   52 (247)
                      |+|.++. .|.||||+|+..|+.+++++|++.|+++..                              .+..|..|.|||
T Consensus        50 dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l  129 (337)
T 4g8k_A           50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF  129 (337)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH
T ss_pred             CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHH
Confidence            4444443 366666666666666666666666554321                              123445566666


Q ss_pred             HHHHhcCCHHHHHHHHhcCCcch---------hcccCCCCcHHHHHHhcCCHHHHHHHHHc-CCccccccCCCCCcHHHH
Q 025876           53 HISALLGHLDFTKALLNHKPELA---------KELDSLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHL  122 (247)
Q Consensus        53 ~~A~~~g~~~~~~~Ll~~~~~~~---------~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~  122 (247)
                      |+|+..|+.+++++|++.|+++.         ...+..|.||||+|+..|+.+++++|+.. |+++ +..+..|+|+++.
T Consensus       130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~  208 (337)
T 4g8k_A          130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIH  208 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHH
Confidence            66666666666666666665441         12244566777777777777777777753 5555 5666677777766


Q ss_pred             HHhcCc----HHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc--cccccccCCccchhhHHHhhcccce
Q 025876          123 AAMRGR----VEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY--AAWLDWTLSICYPKHLTIETRGAVA  196 (247)
Q Consensus       123 A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~--~~~~~~~~~g~~pl~~a~~~~~~~~  196 (247)
                      ++..+.    ..++++|+++|++++.++..|+||||+|+..++.+++++|+..  .+....+..|+||||+|++.+....
T Consensus       209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence            654332    3466777777777777777777888888877777777766543  2345556677888888887777777


Q ss_pred             eeccccCCCh----hhhHHhhhhhhhhhhccccCC
Q 025876          197 ILMMPSVGGI----TFFQESFAERSLIVVTEEVDY  227 (247)
Q Consensus       197 ~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~  227 (247)
                      +..|++.+..    ++++.+...+...++..++..
T Consensus       289 v~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          289 AELLCKRGASTDCGDLVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             HHHHHTTSCSSTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            7777655433    344555556666666665554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.9e-34  Score=226.84  Aligned_cols=123  Identities=21%  Similarity=0.276  Sum_probs=96.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL   88 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~   88 (247)
                      +..|.|+|+.|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~  112 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHA  112 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            446788999999999999999999988876   455677899999999999999999999998887 7788889999999


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI  136 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  136 (247)
                      |+..|+.+++++|+..|+++ +..+..|.||||+|+..++.+++++++
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            99999999999999988877 455555555555555544444444443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=216.07  Aligned_cols=199  Identities=23%  Similarity=0.247  Sum_probs=176.9

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.+......  .+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus        33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  109 (240)
T 3eu9_A           33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL--GGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEG  109 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhh--cCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCC
Confidence            467788999999999999999999999999999876432  3345999999999999999999999999998 7889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCc-HHHHHHHHHcCCCcccccc-CCCcHHHHHHhcC
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-VEVVQELISANFDSALVKF-HGDTVLHFKAEHL  160 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~  160 (247)
                      .||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..++ .+++++|++.+++++..+. .|.||||+|+..+
T Consensus       110 ~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          110 CSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence            99999999999999999999999988 7889999999999997766 8999999999999999986 8999999999999


Q ss_pred             Ccceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCCC
Q 025876          161 SLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVGG  205 (247)
Q Consensus       161 ~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  205 (247)
                      +.+++++|++.+... ..+..|.||+|+|+..+....+..|++.+.
T Consensus       189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             CHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            999999998887644 455689999999998888777777665543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.3e-32  Score=211.26  Aligned_cols=172  Identities=21%  Similarity=0.206  Sum_probs=158.5

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.++...  +..+..|.||||+|+..|+.+++++|++.++++ +..+..|
T Consensus        49 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g  125 (223)
T 2f8y_A           49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLG  125 (223)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTS
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCC
Confidence            4678889999999999999999999999999887322  455677999999999999999999999999998 8889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          126 KSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch
Confidence            99999999999999999999999988 78899999999999999999999999999999999999999999999999999


Q ss_pred             ceeecccccccccccc
Q 025876          163 CTQRLPSNYAAWLDWT  178 (247)
Q Consensus       163 ~~~~~l~~~~~~~~~~  178 (247)
                      +++++|++++......
T Consensus       205 ~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          205 DIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             HHHHHHHHTTCSSCC-
T ss_pred             HHHHHHHHcCCCcccc
Confidence            9999999988765443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-32  Score=213.09  Aligned_cols=171  Identities=18%  Similarity=0.194  Sum_probs=154.5

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhc--cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRK--TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDS   80 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~   80 (247)
                      .+++.+|..|.||||+|+..|+.+++++|++.+++....  ...|..|.||||+|+..|+.+++++|++.|+++ +..+.
T Consensus        28 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~  106 (232)
T 2rfa_A           28 CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARAT  106 (232)
T ss_dssp             SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCC
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccC
Confidence            477889999999999999999999999999999875332  335667999999999999999999999999987 55444


Q ss_pred             -------------CCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHH----HHHHHcCCCc-
Q 025876           81 -------------LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV----QELISANFDS-  142 (247)
Q Consensus        81 -------------~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~-  142 (247)
                                   .|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++    ++|+++|++. 
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence                         7999999999999999999999999998 78999999999999999999988    9999999988 


Q ss_pred             -----cccccCCCcHHHHHHhcCCcceeeccccccccc
Q 025876          143 -----ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL  175 (247)
Q Consensus       143 -----~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  175 (247)
                           +..|..|.||||+|+..|+.+++++|++++...
T Consensus       186 ~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          186 LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             SCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             hhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence                 577999999999999999999999999888654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-33  Score=226.39  Aligned_cols=184  Identities=21%  Similarity=0.230  Sum_probs=164.7

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus        64 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g  139 (299)
T 1s70_B           64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEG  139 (299)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCC
Confidence            467888999999999999999999999999999887   556778999999999999999999999999998 8889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHc-CCccc-------------------------cccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876           83 HSPLHLAAAEGHVQIVKELLLA-NKDAC-------------------------LVADQDGRIPLHLAAMRGRVEVVQELI  136 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~-~~~~~-------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll  136 (247)
                      .||||+|+..++.++++.++.. +.++.                         ...+..|.||||+|+..|+.+++++|+
T Consensus       140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  219 (299)
T 1s70_B          140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (299)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence            9999999999999999988865 33321                         124578999999999999999999999


Q ss_pred             HcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHh
Q 025876          137 SANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIE  190 (247)
Q Consensus       137 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~  190 (247)
                      ++|++++..|..|.||||+|+..|+.+++++|++.++.. ..+..|.||+|+|.+
T Consensus       220 ~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999998887644 456689999999863

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.8e-33  Score=218.13  Aligned_cols=183  Identities=19%  Similarity=0.113  Sum_probs=163.4

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc-----chhcc
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE-----LAKEL   78 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-----~~~~~   78 (247)
                      +++..|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.+..     ..+..
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  113 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  113 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhcc
Confidence            67889999999999999999999999999999877   55677899999999999999999999999864     23677


Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHH
Q 025876           79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ-DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA  157 (247)
Q Consensus        79 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~  157 (247)
                      +..|.||||+|+..|+.+++++|++.|+++ +..+. .|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus       114 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  192 (236)
T 1ikn_D          114 NYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW  192 (236)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHH
Confidence            889999999999999999999999999999 56776 9999999999999999999999999999999999999999999


Q ss_pred             hcCCcceeeccccccccc---cccCCccchhhHHHh
Q 025876          158 EHLSLCTQRLPSNYAAWL---DWTLSICYPKHLTIE  190 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~---~~~~~g~~pl~~a~~  190 (247)
                      ..++.+++++|++.++..   ..+..+.+|...+..
T Consensus       193 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          193 GRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             TSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             ccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            999999999999888744   333457777766553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.9e-34  Score=233.37  Aligned_cols=199  Identities=13%  Similarity=0.054  Sum_probs=166.7

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhc--------------------------------c--------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRK--------------------------------T--------   42 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~--------------------------------~--------   42 (247)
                      .+++.+|..|.||||+|+..|+.+++++|++.++.....                                +        
T Consensus        44 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  123 (364)
T 3ljn_A           44 VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE  123 (364)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence            356777777888888888888888888887776533210                                0        


Q ss_pred             ---------ccccCCCcHHHHHHhcC--CHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCc----
Q 025876           43 ---------SLTSLRETPLHISALLG--HLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD----  107 (247)
Q Consensus        43 ---------~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~----  107 (247)
                               ..|..|.||||+|+..|  +.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+++    
T Consensus       124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  202 (364)
T 3ljn_A          124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL  202 (364)
T ss_dssp             CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSC
T ss_pred             HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Confidence                     15567999999999999  999999999999998 88899999999999999999999999999988    


Q ss_pred             -cccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-----------
Q 025876          108 -ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-----------  175 (247)
Q Consensus       108 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-----------  175 (247)
                       + +..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.++..           
T Consensus       203 ~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  281 (364)
T 3ljn_A          203 RL-DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT  281 (364)
T ss_dssp             CT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSS
T ss_pred             cc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcc
Confidence             6 788999999999999999999999999999999999999999999999999999999998876532           


Q ss_pred             --cccCCccchhhHHHhhcccceeeccccC
Q 025876          176 --DWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       176 --~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                        ..+..+++|++.|+..+....+..++..
T Consensus       282 ~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQE  311 (364)
T ss_dssp             SBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhccCHHHHHHHHHH
Confidence              1344678888888866655555555444

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.1e-32  Score=201.50  Aligned_cols=158  Identities=25%  Similarity=0.323  Sum_probs=146.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA   89 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A   89 (247)
                      +...|+||.|+..|+.+++++|++.+.++   +..|..|.||||+|+. |+.+++++|++.|+++ +..+..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA   77 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            35679999999999999999999999877   5567789999999999 9999999999999998 88899999999999


Q ss_pred             HhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC-ccccccCCCcHHHHHHhcCCcceeecc
Q 025876           90 AAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        90 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      +..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++.+++++|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999988 78899999999999999999999999999998 588899999999999999999999999


Q ss_pred             ccccc
Q 025876          169 SNYAA  173 (247)
Q Consensus       169 ~~~~~  173 (247)
                      +++++
T Consensus       157 l~~GA  161 (162)
T 1ihb_A          157 QANGA  161 (162)
T ss_dssp             HHTC-
T ss_pred             HHhCC
Confidence            88765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.8e-32  Score=222.64  Aligned_cols=182  Identities=22%  Similarity=0.200  Sum_probs=164.3

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhc-----
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKE-----   77 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~-----   77 (247)
                      .+++.+|..|.||||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +.     
T Consensus        82 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  157 (351)
T 3utm_A           82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV---NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHG  157 (351)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCC
Confidence            467889999999999999999999999999999877   556778999999999999999999999998875 32     


Q ss_pred             -------------------------------------------------ccCCCCcHHHHHHhc---CCHHHHHHHHHcC
Q 025876           78 -------------------------------------------------LDSLKHSPLHLAAAE---GHVQIVKELLLAN  105 (247)
Q Consensus        78 -------------------------------------------------~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~  105 (247)
                                                                       .+..|.||||+|+..   +..+++++|+..+
T Consensus       158 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g  237 (351)
T 3utm_A          158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG  237 (351)
T ss_dssp             CCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT
T ss_pred             CcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC
Confidence                                                             246678999999999   5589999999999


Q ss_pred             CccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccch
Q 025876          106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYP  184 (247)
Q Consensus       106 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~p  184 (247)
                      +++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.++. ...+..|.||
T Consensus       238 ~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ta  316 (351)
T 3utm_A          238 ANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA  316 (351)
T ss_dssp             CCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCh
Confidence            998 78899999999999999999999999999999999999999999999999999999999888764 4555689999


Q ss_pred             hhHHH
Q 025876          185 KHLTI  189 (247)
Q Consensus       185 l~~a~  189 (247)
                      +++|.
T Consensus       317 l~~a~  321 (351)
T 3utm_A          317 AQMGN  321 (351)
T ss_dssp             HHHSC
T ss_pred             hhhhh
Confidence            99973

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1e-32  Score=203.07  Aligned_cols=156  Identities=31%  Similarity=0.316  Sum_probs=142.9

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcH
Q 025876           50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV  129 (247)
Q Consensus        50 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  129 (247)
                      ++|+.||+.|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|+..|+++ +..+..|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            4699999999999999999999998 889999999999999999999999999999999 78999999999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccCCChh
Q 025876          130 EVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSVGGIT  207 (247)
Q Consensus       130 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  207 (247)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++. ...+..|+||||+|+..+....+..|++.|+..
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            999999999999999999999999999999999999999887764 456668999999999999888888888777643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=4e-32  Score=196.83  Aligned_cols=151  Identities=27%  Similarity=0.305  Sum_probs=142.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHh
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA   91 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~   91 (247)
                      ..++|+.|+..|+.+++++|++.+.+..    .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            4689999999999999999999998652    4677999999999999999999999999998 8889999999999999


Q ss_pred             cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876           92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        92 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      .|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999998 78899999999999999999999999999999999999999999999999999998876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.3e-33  Score=219.23  Aligned_cols=171  Identities=19%  Similarity=0.117  Sum_probs=153.5

Q ss_pred             CCccc----cCCCCchHHHHHHHc---CCHHHHHHHHhcCchhhhcc--------ccccCCCcHHHHHHhcCCHHHHHHH
Q 025876            3 IGARE----HDEDSTHKLYEASLR---GSVRSLNTLMQSDSLILRKT--------SLTSLRETPLHISALLGHLDFTKAL   67 (247)
Q Consensus         3 ~~~~~----~~~~~~~~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~~~~L   67 (247)
                      .+++.    +|..|.||||+|+..   |+.+++++|++.+++.....        ..|..|.||||+|+..|+.+++++|
T Consensus        30 ~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L  109 (256)
T 2etb_A           30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL  109 (256)
T ss_dssp             CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHH
Confidence            35666    799999999999999   99999999999987663221        2346699999999999999999999


Q ss_pred             HhcCCcchhcccCC-------------CCcHHHHHHhcCCHHHHHHHHH---cCCccccccCCCCCcHHHHHHh--cCcH
Q 025876           68 LNHKPELAKELDSL-------------KHSPLHLAAAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAM--RGRV  129 (247)
Q Consensus        68 l~~~~~~~~~~~~~-------------g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~--~~~~  129 (247)
                      ++.|+++ +..+..             |.||||+|+..|+.+++++|++   .|+++ +..|..|+||||+|+.  .++.
T Consensus       110 l~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          110 VENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             HHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH
T ss_pred             HHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCc
Confidence            9999998 666665             9999999999999999999999   89988 7899999999999998  7888


Q ss_pred             H-------HHHHHHHcCCCc-------cccccCCCcHHHHHHhcCCcceeeccccccccc
Q 025876          130 E-------VVQELISANFDS-------ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL  175 (247)
Q Consensus       130 ~-------~v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  175 (247)
                      +       ++++|+++|+++       +..|..|.||||+|+..|+.+++++|++++...
T Consensus       188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            8       999999999999       889999999999999999999999999887654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=1.5e-32  Score=201.55  Aligned_cols=161  Identities=26%  Similarity=0.319  Sum_probs=145.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                      .|..+.++|+.|+..|+.+++++|++.+..  .....+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHH
Confidence            467889999999999999999999986652  22455677999999999999999999999999998 888999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876           88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL  167 (247)
Q Consensus        88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  167 (247)
                      +|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+. ++.+++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence            999999999999999999998 7889999999999999999999999999999999999999999999777 88999999


Q ss_pred             cccccc
Q 025876          168 PSNYAA  173 (247)
Q Consensus       168 l~~~~~  173 (247)
                      |++.++
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            987764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.98  E-value=5.5e-32  Score=220.44  Aligned_cols=201  Identities=21%  Similarity=0.185  Sum_probs=175.2

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhc-------cccccCCCcHHHHHHhcCCHHHHHHHHh-cCCcc
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRK-------TSLTSLRETPLHISALLGHLDFTKALLN-HKPEL   74 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~-------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-~~~~~   74 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.|+++...       ...+..|.||||+|+..|+.+++++|++ .|+++
T Consensus       116 ~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~  195 (337)
T 4g8k_A          116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  195 (337)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT
T ss_pred             chhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc
Confidence            467889999999999999999999999999998866322       1234569999999999999999999996 57887


Q ss_pred             hhcccCCCCcHHHHHHhcCC----HHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCC
Q 025876           75 AKELDSLKHSPLHLAAAEGH----VQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHG  149 (247)
Q Consensus        75 ~~~~~~~g~t~l~~A~~~g~----~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g  149 (247)
                       +..+..|.|+++.++..+.    ..++++|+++|+++ +..+..|+||||+|+..|+.+++++|+. .+++++.+|..|
T Consensus       196 -n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G  273 (337)
T 4g8k_A          196 -NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  273 (337)
T ss_dssp             -TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTS
T ss_pred             -CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCC
Confidence             8899999999998876654    45889999999998 7899999999999999999999999998 489999999999


Q ss_pred             CcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeeccccCCChhhh
Q 025876          150 DTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFF  209 (247)
Q Consensus       150 ~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~  209 (247)
                      +||||+|+..|+.+++++|++.|+..    ...+|||+|+..+....+..|++.|....+
T Consensus       274 ~TpL~~A~~~g~~~iv~~Ll~~GAd~----n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          274 KTALLLAVELKLKKIAELLCKRGAST----DCGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHTTSCSS----TTCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            99999999999999999999988754    456899999999998888888888776655

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=3.6e-32  Score=215.73  Aligned_cols=192  Identities=18%  Similarity=0.122  Sum_probs=131.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH-
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA-   90 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~-   90 (247)
                      ..+++|.|+..|+.+.++.+++.+... ..+..|..|.||||+|+..|+.+++++|++.|+...+..+..|.||||+|+ 
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            345667777777777777777665542 124456667777777777777777777777776223667777777777777 


Q ss_pred             ----hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceee
Q 025876           91 ----AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQR  166 (247)
Q Consensus        91 ----~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  166 (247)
                          ..++.+++++|+..+... ...+..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.++++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                456677777777777665 556667777777777777777777777777777777777777777777777777777


Q ss_pred             cccc-ccc-cccccCCccchhhHHHhhcccceeeccccCCC
Q 025876          167 LPSN-YAA-WLDWTLSICYPKHLTIETRGAVAILMMPSVGG  205 (247)
Q Consensus       167 ~l~~-~~~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  205 (247)
                      +|++ .+. ....+..|.||+|+|+..+....+..|++..+
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            6665 443 33455567777777777777666666655543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.2e-33  Score=214.25  Aligned_cols=187  Identities=14%  Similarity=0.054  Sum_probs=162.4

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSP   85 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   85 (247)
                      +..+..+.|+||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tp   90 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTP   90 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence            345667889999999999999999999999877   556788999999999999999999999999998 8899999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH--HhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876           86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA--AMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC  163 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  163 (247)
                      ||+|+..|+.+++++|++.|+++....+..|+||||+|  +..|+.+++++|++.|++++..+..|.||++.++....  
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~--  168 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG--  168 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc--
Confidence            99999999999999999999999433357999999999  99999999999999999999999999999986554433  


Q ss_pred             eeecccccccc---ccccCCccchhhHHHhhcccceeec
Q 025876          164 TQRLPSNYAAW---LDWTLSICYPKHLTIETRGAVAILM  199 (247)
Q Consensus       164 ~~~~l~~~~~~---~~~~~~g~~pl~~a~~~~~~~~~~~  199 (247)
                       .++|+..++.   ...+..|+||||+|+..+....+..
T Consensus       169 -~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          169 -DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             -TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             -cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence             3566666654   4566689999999998887777665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=2.4e-31  Score=193.26  Aligned_cols=153  Identities=24%  Similarity=0.310  Sum_probs=142.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      +.|+|+.|+..|+.+++++|++... ++   +..|..|.||||+ +..|+.+++++|++.|+++ +..|..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP---DALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc---cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence            5799999999999999999999822 33   5567789999999 9999999999999999998 888999999999999


Q ss_pred             hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876           91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      ..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++. ++++..+..|.|||++|+..++.+++++|++
T Consensus        77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999999988 78899999999999999999999999998 9999999999999999999999999998876


Q ss_pred             c
Q 025876          171 Y  171 (247)
Q Consensus       171 ~  171 (247)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.4e-32  Score=218.05  Aligned_cols=165  Identities=19%  Similarity=0.211  Sum_probs=153.6

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHH-----hcCCHHHHHHHHhcCCcchhc
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISA-----LLGHLDFTKALLNHKPELAKE   77 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~-----~~g~~~~~~~Ll~~~~~~~~~   77 (247)
                      .+|.+|..|.||||+|+..|+.+++++|++.++ ++   +..+..|.||||+|+     ..++.+++++|++.|... +.
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~  178 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV---DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AK  178 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CC
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cc
Confidence            378899999999999999999999999999998 54   556777999999999     668999999999999876 77


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCCCcHHHHH
Q 025876           78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus        78 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A  156 (247)
                      .+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++ .|++++..|..|.||||+|
T Consensus       179 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A  257 (276)
T 4hbd_A          179 ASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA  257 (276)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence            8899999999999999999999999999998 7899999999999999999999999999 8999999999999999999


Q ss_pred             HhcCCcceeeccccccc
Q 025876          157 AEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       157 ~~~~~~~~~~~l~~~~~  173 (247)
                      +..|+.+++++|++...
T Consensus       258 ~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          258 LDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHTCHHHHHHHHHHCC
T ss_pred             HHcCCHHHHHHHHhccC
Confidence            99999999999887643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.3e-32  Score=220.99  Aligned_cols=176  Identities=16%  Similarity=0.036  Sum_probs=142.9

Q ss_pred             CCccc-cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCC---HHHHHHHHhcC-Ccchhc
Q 025876            3 IGARE-HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGH---LDFTKALLNHK-PELAKE   77 (247)
Q Consensus         3 ~~~~~-~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~~-~~~~~~   77 (247)
                      .|+|. +|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+   .++++.|++.+ .++ +.
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~-~~  196 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-IL  196 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG-GE
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc-cC
Confidence            56777 8999999999999999999999999999887   5667889999999999998   67777887776 444 88


Q ss_pred             ccCCCCcHHHHHHh----cCCHHHHHHHHHc--------------------CCccccccCCCCCcHHHHHHhcCcHHHHH
Q 025876           78 LDSLKHSPLHLAAA----EGHVQIVKELLLA--------------------NKDACLVADQDGRIPLHLAAMRGRVEVVQ  133 (247)
Q Consensus        78 ~~~~g~t~l~~A~~----~g~~~~~~~Ll~~--------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  133 (247)
                      .|..|.||||+|+.    .|+.+++++|++.                    ++++ +..+..|+||||+|+.      ++
T Consensus       197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~  269 (327)
T 1sw6_A          197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LK  269 (327)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HH
T ss_pred             CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------HH
Confidence            89999999999999    8999999999987                    6666 6788999999999985      88


Q ss_pred             HHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhh
Q 025876          134 ELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIET  191 (247)
Q Consensus       134 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~  191 (247)
                      +|+++  +++.+|..|+||||+|+..|+.+++++|++.++.. ..+..|.||||+|++.
T Consensus       270 ~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          270 WIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            88887  68888999999999999999999999998887644 5566899999999854

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.4e-32  Score=213.80  Aligned_cols=167  Identities=17%  Similarity=0.092  Sum_probs=147.9

Q ss_pred             CCCCchHHHHHH---HcCCHHHHHHHHhcCchhhh--------ccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhc
Q 025876            9 DEDSTHKLYEAS---LRGSVRSLNTLMQSDSLILR--------KTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKE   77 (247)
Q Consensus         9 ~~~~~~~L~~A~---~~g~~~~~~~Ll~~~~~~~~--------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~   77 (247)
                      |..|.||||+|+   +.|+.+++++|++.+++...        ....|..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Cc
Confidence            367999999999   78999999999998765311        1334457999999999999999999999999998 66


Q ss_pred             cc--------------CCCCcHHHHHHhcCCHHHHHHHHH---cCCccccccCCCCCcHHHHHHhcCc---------HHH
Q 025876           78 LD--------------SLKHSPLHLAAAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR---------VEV  131 (247)
Q Consensus        78 ~~--------------~~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~  131 (247)
                      .+              ..|.||||+|+..|+.+++++|++   .|+++ +..|..|+||||+|+..++         .++
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~  200 (260)
T 3jxi_A          122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKM  200 (260)
T ss_dssp             CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence            66              589999999999999999999999   88988 7899999999999998877         799


Q ss_pred             HHHHHHcCCCc-------cccccCCCcHHHHHHhcCCcceeeccccccccccc
Q 025876          132 VQELISANFDS-------ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDW  177 (247)
Q Consensus       132 v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  177 (247)
                      +++|+++|+++       +..|..|.||||+|+..|+.+++++|++++.....
T Consensus       201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            99999999988       67899999999999999999999999988875433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=1.4e-32  Score=219.14  Aligned_cols=164  Identities=12%  Similarity=0.012  Sum_probs=149.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC-CcHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK-HSPLH   87 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~   87 (247)
                      ..+|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+..| .||||
T Consensus        59 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~  134 (285)
T 3kea_A           59 LLENEFPLHQAATLEDTKIVKILLFSGLDD---SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFY  134 (285)
T ss_dssp             CCTTCCHHHHHTTSSSCHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHH
Confidence            335999999999999999999999999987   556778999999999999999999999999998 8889999 89999


Q ss_pred             HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcH-HHHHHhcCCcceee
Q 025876           88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV-LHFKAEHLSLCTQR  166 (247)
Q Consensus        88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~  166 (247)
                      +|+..|+.+++++|+..+++..  ....|+||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..++.++++
T Consensus       135 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          135 HAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             HHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            9999999999999999998762  22389999999999999999999999999999999999998 99999999999999


Q ss_pred             cccccccccccc
Q 025876          167 LPSNYAAWLDWT  178 (247)
Q Consensus       167 ~l~~~~~~~~~~  178 (247)
                      +|++.++.....
T Consensus       213 ~Ll~~gad~~~~  224 (285)
T 3kea_A          213 ALFKYDINIYSA  224 (285)
T ss_dssp             HHTTSCBCSTTT
T ss_pred             HHHHcCCCCCCC
Confidence            999988765443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1e-31  Score=212.60  Aligned_cols=166  Identities=19%  Similarity=0.185  Sum_probs=148.4

Q ss_pred             ccCCCCchHHHHHHHc---CCHHHHHHHHhcCchhh------hc--cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch
Q 025876            7 EHDEDSTHKLYEASLR---GSVRSLNTLMQSDSLIL------RK--TSLTSLRETPLHISALLGHLDFTKALLNHKPELA   75 (247)
Q Consensus         7 ~~~~~~~~~L~~A~~~---g~~~~~~~Ll~~~~~~~------~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   75 (247)
                      ..|..|.||||+|+..   |+.+++++|++.+++..      +.  ...|..|.||||+|+..|+.+++++|++.|+++ 
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-
Confidence            3478999999999987   99999999999986531      11  124567999999999999999999999999998 


Q ss_pred             hcccC--------------CCCcHHHHHHhcCCHHHHHHHHH---cCCccccccCCCCCcHHHHHHhcCc---------H
Q 025876           76 KELDS--------------LKHSPLHLAAAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR---------V  129 (247)
Q Consensus        76 ~~~~~--------------~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~  129 (247)
                      +..+.              .|.||||+|+..|+.+++++|++   .|+++ +..|..|+||||+|+..|+         .
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  206 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVT  206 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence            66665              79999999999999999999999   88988 7899999999999999888         8


Q ss_pred             HHHHHHHHcCCCcc-------ccccCCCcHHHHHHhcCCcceeecccccccc
Q 025876          130 EVVQELISANFDSA-------LVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW  174 (247)
Q Consensus       130 ~~v~~Ll~~~~~~~-------~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  174 (247)
                      +++++|+++|++++       ..|..|.||||+|+..|+.+++++|++.++.
T Consensus       207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence            99999999999886       4799999999999999999999999998873

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.8e-31  Score=198.41  Aligned_cols=164  Identities=18%  Similarity=0.278  Sum_probs=148.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA   89 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A   89 (247)
                      ..+.++|+.|+..|+.+++++|++.++..  .+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            45789999999999999999999986532  2456777999999999999999999999999998 88899999999999


Q ss_pred             HhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccc
Q 025876           90 AAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPS  169 (247)
Q Consensus        90 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  169 (247)
                      +..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q 025876          170 NYAAWLDW  177 (247)
Q Consensus       170 ~~~~~~~~  177 (247)
                      +.+.....
T Consensus       159 ~~g~~~~~  166 (179)
T 3f6q_A          159 KMGQNLNR  166 (179)
T ss_dssp             HTTCCCSC
T ss_pred             HhhcCccc
Confidence            88875543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=9.5e-32  Score=208.97  Aligned_cols=179  Identities=17%  Similarity=0.124  Sum_probs=131.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL   88 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~   88 (247)
                      +..|.||||.|++.|+.+.++.|++.|.++..    +..|.||||.|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~   76 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHN   76 (239)
T ss_dssp             ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc----CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence            34689999999999999999999999987732    345899999999999999999999999987 8889999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCC-cHHHHH--HhcCCccee
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGD-TVLHFK--AEHLSLCTQ  165 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~  165 (247)
                      |+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|. ||||+|  +..|+.+++
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence            99999999999999999998 78999999999999999999999999999999999988777 999999  788999999


Q ss_pred             eccccccccccc----------cCCccchhhHHHhhcc
Q 025876          166 RLPSNYAAWLDW----------TLSICYPKHLTIETRG  193 (247)
Q Consensus       166 ~~l~~~~~~~~~----------~~~g~~pl~~a~~~~~  193 (247)
                      ++|+..++....          +..+.+|.++++..+.
T Consensus       156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999887765443          4456788888775554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.2e-30  Score=196.09  Aligned_cols=159  Identities=17%  Similarity=0.142  Sum_probs=144.3

Q ss_pred             cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 025876           42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLH  121 (247)
Q Consensus        42 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  121 (247)
                      +..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  106 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM  106 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            446777999999999999999999999999987 788999999999999999999999999999988 788999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeecc
Q 025876          122 LAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMM  200 (247)
Q Consensus       122 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l  200 (247)
                      +|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..|
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF  186 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877644 4566899999999987776665555


Q ss_pred             cc
Q 025876          201 PS  202 (247)
Q Consensus       201 ~~  202 (247)
                      ++
T Consensus       187 l~  188 (192)
T 2rfm_A          187 TE  188 (192)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=4.2e-30  Score=186.83  Aligned_cols=150  Identities=25%  Similarity=0.252  Sum_probs=116.2

Q ss_pred             CCCCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccC
Q 025876            1 MEIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDS   80 (247)
Q Consensus         1 ~~~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~   80 (247)
                      ||-..+..++.|.|+||+|+..|+.+++++|++.+.++   +..|..|.||||+|+ .|+.+++++|++.|+++ +..+.
T Consensus         1 mep~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~   75 (156)
T 1bi7_B            1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP   75 (156)
T ss_dssp             ---------CCSTTHHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT
T ss_pred             CCCCccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC
Confidence            45667788899999999999999999999999998876   556778999999985 89999999999999998 88899


Q ss_pred             CCCc-HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876           81 LKHS-PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus        81 ~g~t-~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      .|.| |||+|+..|+.+++++|+++|+++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus        76 ~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           76 ATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999 999999999999999999999998 78899999999999999999999999999999999999999987643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=4e-30  Score=187.86  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=142.5

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      ..||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+. |+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            679999999999999999999999988 8889999999999999 9999999999999988 788999999999999999


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc--ccccCCccchhhHHHhhcccceeeccccCC
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW--LDWTLSICYPKHLTIETRGAVAILMMPSVG  204 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~--~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  204 (247)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+..  ...+..|.||+|+|+..+....+..|++.+
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999988774  566668999999999888877777766654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.2e-29  Score=186.39  Aligned_cols=152  Identities=18%  Similarity=0.193  Sum_probs=139.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      |.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence            889999999999999999999999887 888999999999999999999999999999988 788999999999999999


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccc
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMP  201 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~  201 (247)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..|.
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999999999999999999999999998877644 45668999999999877655554443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.8e-29  Score=185.92  Aligned_cols=156  Identities=26%  Similarity=0.271  Sum_probs=141.7

Q ss_pred             cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876           46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM  125 (247)
Q Consensus        46 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  125 (247)
                      ..+.++|+.|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            34789999999999999999999999998 888999999999999999999999999999988 7889999999999999


Q ss_pred             cCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876          126 RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       126 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      .|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..|++.
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999998877644 4556899999999988877666665543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=3.2e-29  Score=177.97  Aligned_cols=133  Identities=26%  Similarity=0.344  Sum_probs=114.3

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCC-
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL-   81 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-   81 (247)
                      .+++..|..|.||||+|+..|+.+++++|++.+.++   +..|..|.||||+|+. |+.+++++|++.|+++ +..+.. 
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~   77 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPAT   77 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCC
Confidence            467888888999999999999999999999888766   4556778999999999 9999999999988887 777888 


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 025876           82 KHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD  141 (247)
Q Consensus        82 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  141 (247)
                      |.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..++.+++++|+++|++
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            889999999999999999999888887 67888899999999998999999999887764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.2e-28  Score=181.76  Aligned_cols=143  Identities=22%  Similarity=0.225  Sum_probs=128.7

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      ++.+|..|.||||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.|
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t  104 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGT  104 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            6778899999999999999999999999999877   556778999999999999999999999999998 888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcH
Q 025876           85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV  152 (247)
Q Consensus        85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~  152 (247)
                      |||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++++++....+..|.||
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          105 PLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            999999999999999999999998 7899999999999999999999999999999888888888776

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=2.5e-29  Score=184.23  Aligned_cols=157  Identities=22%  Similarity=0.191  Sum_probs=137.2

Q ss_pred             ccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876           45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA  124 (247)
Q Consensus        45 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  124 (247)
                      |+.|.++||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            4458899999999999999999999665444677888999999999999999999999999998 788999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC
Q 025876          125 MRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       125 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      ..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ...+..|.||+|+|.. +....+..|...
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999887764 4556689999999875 444444444443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=5e-29  Score=180.91  Aligned_cols=152  Identities=17%  Similarity=0.191  Sum_probs=138.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCC-cchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhc
Q 025876           48 RETPLHISALLGHLDFTKALLNHKP-ELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR  126 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  126 (247)
                      +.||||.|+..|+.+++++|++... ++ +..+..|.||||+ +..|+.+++++|++.|+++ +..+..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            5689999999999999999999832 54 7889999999999 9999999999999999998 78899999999999999


Q ss_pred             CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeecccc
Q 025876          127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPS  202 (247)
Q Consensus       127 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~  202 (247)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++..+....+..|.||+|+|+..+....+..|++
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998886666777789999999998877766665543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.1e-29  Score=206.15  Aligned_cols=182  Identities=11%  Similarity=-0.007  Sum_probs=143.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccc-cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTS-LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      +.+|.|+..+..++++.|++.+.++   +. .|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dv---n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNL---NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCS---CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHh
Confidence            3458888888899999999999877   44 5778999999999999999999999999998 88999999999999999


Q ss_pred             CC---HHHHHHHHHcCCccccccCCCCCcHHHHHHh----cCcHHHHHHHHHc--------------------CCCcccc
Q 025876           93 GH---VQIVKELLLANKDACLVADQDGRIPLHLAAM----RGRVEVVQELISA--------------------NFDSALV  145 (247)
Q Consensus        93 g~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~  145 (247)
                      |+   .++++.|++.+....+..+..|+||||+|+.    .|+.+++++|++.                    +++++..
T Consensus       175 g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~  254 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK  254 (327)
T ss_dssp             SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------
T ss_pred             cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc
Confidence            98   6888888888744337899999999999999    8999999999986                    8999999


Q ss_pred             ccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeeccccCCCh
Q 025876          146 KFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGI  206 (247)
Q Consensus       146 ~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  206 (247)
                      +..|.||||.|+.      +++|+.. +....+..|+||||+|+..+....+..|++.+..
T Consensus       255 ~~~g~t~L~~a~~------~~~Ll~~-~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad  308 (327)
T 1sw6_A          255 NGERKDSILENLD------LKWIIAN-MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD  308 (327)
T ss_dssp             -----CHHHHHCS------HHHHHHH-TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             cccCCChhHHHHH------HHHHHHh-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999985      7777776 4666777899999999998887777777766443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=6.8e-29  Score=179.78  Aligned_cols=149  Identities=26%  Similarity=0.252  Sum_probs=135.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      ..++||.|+..|+.+++++|++.|.++ + .+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            458999999999999999999999876 3 5889999999999999999999999999988 788999999999999999


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeec
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILM  199 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~  199 (247)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999998877644 456689999999998777655443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=4e-30  Score=198.48  Aligned_cols=197  Identities=13%  Similarity=0.028  Sum_probs=156.8

Q ss_pred             HHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCc
Q 025876           28 LNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD  107 (247)
Q Consensus        28 ~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  107 (247)
                      ++.|+++++........+..+.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            46788888877655556667889999999999999999999999988 88999999999999999999999999999999


Q ss_pred             cccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccc-cCCCcHHHHH--HhcCCcceeecccccccccc-ccCCccc
Q 025876          108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFK--AEHLSLCTQRLPSNYAAWLD-WTLSICY  183 (247)
Q Consensus       108 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~l~~~~~~~~-~~~~g~~  183 (247)
                      + +..|..|+||||+|+..|+.+++++|++.|++++..+ ..|.||||+|  +..++.+++++|++.+.... .+..|.+
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  158 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY  158 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence            8 7889999999999999999999999999999999996 6999999999  99999999999998876544 4446788


Q ss_pred             hhhHHHhhccccee--------eccccCCChhhhHHhhhhhhhhhhccccC
Q 025876          184 PKHLTIETRGAVAI--------LMMPSVGGITFFQESFAERSLIVVTEEVD  226 (247)
Q Consensus       184 pl~~a~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (247)
                      |++.++.......+        ....+..|.+++..+...+...+++...-
T Consensus       159 ~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             HHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            98865544332211        22345557777777777777776665433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.6e-29  Score=186.91  Aligned_cols=157  Identities=11%  Similarity=0.062  Sum_probs=140.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCH----HHHHHHHhcCCcchhcccCCCCcHHH
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHL----DFTKALLNHKPELAKELDSLKHSPLH   87 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~g~t~l~   87 (247)
                      +.++|+.|++.|+.+.++.++..+.....    +..|+||||+|+..|+.    +++++|++.|+++ +.+|..|.||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~----~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE----SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHH----HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccccc----ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            56789999999999999999987754311    24599999999999975    5999999999998 889999999999


Q ss_pred             HHHhcCC------HHHHHHHHHcCCccccccCCCCC-cHHHHHHhcC-----cHHHHHHHHH-cCCCccccccCCCcHHH
Q 025876           88 LAAAEGH------VQIVKELLLANKDACLVADQDGR-IPLHLAAMRG-----RVEVVQELIS-ANFDSALVKFHGDTVLH  154 (247)
Q Consensus        88 ~A~~~g~------~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~~~~~~~~~~~g~t~l~  154 (247)
                      +|+..|+      .+++++|+.+|+++ +..|..|+ ||||+|+..+     ..+++++|++ +|++++.+|..|.||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            9999987      68899999999999 78999999 9999999844     4679999999 99999999999999999


Q ss_pred             HHHhcCCcceeecccccccc
Q 025876          155 FKAEHLSLCTQRLPSNYAAW  174 (247)
Q Consensus       155 ~A~~~~~~~~~~~l~~~~~~  174 (247)
                      +|+..++.+++++|.++...
T Consensus       160 ~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          160 FVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999877653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.3e-28  Score=182.83  Aligned_cols=156  Identities=21%  Similarity=0.185  Sum_probs=137.9

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      +.++||.|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence            7899999999999999999999865545889999999999999999999999999999998 788999999999999999


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCC
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVG  204 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  204 (247)
                      +.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+... ..+..|.||+++|+.......+..+.+.+
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999998877654 45668999999998766655555554443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2e-28  Score=173.84  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=122.2

Q ss_pred             cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCC-CCcHH
Q 025876           42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD-GRIPL  120 (247)
Q Consensus        42 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-g~t~L  120 (247)
                      +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+. |+.+++++|++.++++ +..+.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence            456777999999999999999999999999988 8889999999999999 9999999999999998 688888 99999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876          121 HLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       121 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                      |+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999988764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=7.3e-27  Score=163.08  Aligned_cols=126  Identities=36%  Similarity=0.526  Sum_probs=107.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      +|.||||.|+..|+.+++++|++.+.++   +..+..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHH
Confidence            4788899999999999999988888766   455667888999999888999999988888887 777888888999998


Q ss_pred             hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 025876           91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD  141 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  141 (247)
                      ..|+.+++++|++.++++ +..+..|+|||++|+..|+.+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            888888889888888887 67788888899998888888888888888764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=5e-27  Score=166.63  Aligned_cols=126  Identities=27%  Similarity=0.421  Sum_probs=90.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL   88 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~   88 (247)
                      ...+.|+||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~   86 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHL   86 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence            345677777777777777777777777665   444566777777777777777777777777776 6667777777777


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN  139 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  139 (247)
                      |+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            77777777777777777776 566777777777777777777777777653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=9.5e-30  Score=209.29  Aligned_cols=158  Identities=16%  Similarity=0.103  Sum_probs=130.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch--hcccCCCCcH
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA--KELDSLKHSP   85 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~--~~~~~~g~t~   85 (247)
                      ++.++.||||+|++.|+.+++++|++.++........+..|.||||+|+..|+.+++++|++.|+++.  +..+.. .||
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            45567899999999999999999999987332222334558899999999999999999999997420  222222 899


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCccccc--cCCCCCcHHHHHH-hcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           86 LHLAAAEGHVQIVKELLLANKDACLV--ADQDGRIPLHLAA-MRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~~~~~~~--~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      ||+|+..|+.+++++|+++|+++ +.  .+..|+||||+|+ ..|+.+++++|++.|+       .|.|||++|+..|+.
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCH
Confidence            99999999999999999999987 44  6788999999999 9999999999998653       278999999999999


Q ss_pred             ceeecccccccc
Q 025876          163 CTQRLPSNYAAW  174 (247)
Q Consensus       163 ~~~~~l~~~~~~  174 (247)
                      +++++|++.++.
T Consensus       239 evv~lL~~~ga~  250 (376)
T 2aja_A          239 YVNPFIARHVNR  250 (376)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHhcCcc
Confidence            999999877653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=9.6e-28  Score=174.31  Aligned_cols=142  Identities=18%  Similarity=0.112  Sum_probs=118.7

Q ss_pred             cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCc-HHHH
Q 025876           44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRI-PLHL  122 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~  122 (247)
                      .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+ .|+.+++++|++.|+++ +..+..|+| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            3556999999999999999999999999987 888999999999985 89999999999999998 789999999 9999


Q ss_pred             HHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHH
Q 025876          123 AAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLT  188 (247)
Q Consensus       123 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a  188 (247)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++.. ..+..|.||.+.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999999999999999999999999999998887754 4455778877644

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=3.2e-27  Score=167.65  Aligned_cols=125  Identities=26%  Similarity=0.305  Sum_probs=118.3

Q ss_pred             cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876           46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM  125 (247)
Q Consensus        46 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  125 (247)
                      ..+.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            34889999999999999999999999998 888999999999999999999999999999998 7889999999999999


Q ss_pred             cCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccc
Q 025876          126 RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYA  172 (247)
Q Consensus       126 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  172 (247)
                      .|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.|
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999887654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=7.6e-28  Score=186.93  Aligned_cols=172  Identities=16%  Similarity=0.103  Sum_probs=143.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA   89 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A   89 (247)
                      ..|.|+||.|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A  110 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCA  110 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHH
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence            56799999999999999999999999876   566788999999999999999999999999998 88999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCccccccCCCCC-cHHHHH--HhcCcHHHHHHHHHcCCCcccc---------ccCCCcHHHHHH
Q 025876           90 AAEGHVQIVKELLLANKDACLVADQDGR-IPLHLA--AMRGRVEVVQELISANFDSALV---------KFHGDTVLHFKA  157 (247)
Q Consensus        90 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~---------~~~g~t~l~~A~  157 (247)
                      +..|+.+++++|+++|+++ +..+..|. ||||+|  +..|+.+++++|++.+++++..         +..+.++++++.
T Consensus       111 ~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          111 ASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             HHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence            9999999999999999999 56676666 999999  7889999999999988777655         566888988888


Q ss_pred             hcCCcceeecccccccc-------ccccCCccchhhHH
Q 025876          158 EHLSLCTQRLPSNYAAW-------LDWTLSICYPKHLT  188 (247)
Q Consensus       158 ~~~~~~~~~~l~~~~~~-------~~~~~~g~~pl~~a  188 (247)
                      ..|.  +++.+......       ...+..|.+|.++.
T Consensus       190 ~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          190 KEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             CSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred             cCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHe
Confidence            8775  55555443322       12223466777663

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.2e-26  Score=161.91  Aligned_cols=124  Identities=40%  Similarity=0.549  Sum_probs=119.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      |.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            899999999999999999999999987 788999999999999999999999999999988 788999999999999999


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                      +.+++++|+++|++++..+..|.|||++|+..++.+++++|++.++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999988765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=6.8e-27  Score=166.06  Aligned_cols=123  Identities=26%  Similarity=0.341  Sum_probs=65.6

Q ss_pred             cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876           46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM  125 (247)
Q Consensus        46 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  125 (247)
                      ..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+.
T Consensus         8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            8 HRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHH
Confidence            34555555555555555555555555544 444555555555555555555555555555554 4455555555555555


Q ss_pred             cCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876          126 RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus       126 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      .|+.+++++|+++|++++..|..|.||+++|+..+..++++++.+
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            555555555555555555555555555555555555555554443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=7.5e-27  Score=165.86  Aligned_cols=130  Identities=27%  Similarity=0.269  Sum_probs=117.4

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      |+ .+|..|.||||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.
T Consensus         3 d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~   77 (137)
T 3c5r_A            3 DP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQND   77 (137)
T ss_dssp             -C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGC
T ss_pred             CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCC
Confidence            55 68899999999999999999999999999877   566788999999999999999999999999987 88899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN  139 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  139 (247)
                      ||||+|+..|+.+++++|++.|+++ +..|..|.|||++|+..+..+++++|.+.+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            9999999999999999999999998 789999999999999999999988887643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=6.5e-26  Score=181.71  Aligned_cols=139  Identities=16%  Similarity=0.150  Sum_probs=113.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhc------ccCCCCcHHHHHHhc---CCHHHHHHHHHcCCccccccCCCCCc
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKE------LDSLKHSPLHLAAAE---GHVQIVKELLLANKDACLVADQDGRI  118 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~------~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t  118 (247)
                      ..++|+.|+..|+.+.++.|++.|+++ +.      .+..|.||||+|+..   |+.+++++|+..|+++ +..|..|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            456789999999999888888888887 44      578888999999887   7888999999888888 678888999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcc
Q 025876          119 PLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRG  193 (247)
Q Consensus       119 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~  193 (247)
                      |||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++.++.     .|.||||+|+..+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCC
Confidence            99999999999999999998999888888899999999998899998888887765     57889999886543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=3e-26  Score=170.75  Aligned_cols=137  Identities=19%  Similarity=0.175  Sum_probs=79.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhccc-CCCCcHHHH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLHL   88 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~   88 (247)
                      ..|.||||+|+..|+.+++++|++ +.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~  116 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence            345666666666666666666666 4443   334455666666666666666666666666655 4444 556666666


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      |+..|+.+++++|+++|+++ +..|..|+||||+|+..++.                 ..+.+||++|+..|..+++++|
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHH
Confidence            66666666666666666655 45566666666666543211                 2345566666666666655555


Q ss_pred             c
Q 025876          169 S  169 (247)
Q Consensus       169 ~  169 (247)
                      .
T Consensus       179 ~  179 (183)
T 3deo_A          179 E  179 (183)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=3.4e-26  Score=178.14  Aligned_cols=139  Identities=19%  Similarity=0.170  Sum_probs=111.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhccc-CCCCcHHHH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLHL   88 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~   88 (247)
                      ..|.||||+|+..|+.+++++|++ +.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence            467888888888888888888888 6655   455677888888888888888888888888887 5555 778888888


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      |+..|+.+++++|+.+|+++ +..|..|+||||+|+..+.                 ...+.|||++|+..|+.+++++|
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHH
Confidence            88888888888888888887 6788888888888875221                 24568888888888888888877


Q ss_pred             ccc
Q 025876          169 SNY  171 (247)
Q Consensus       169 ~~~  171 (247)
                      ...
T Consensus       180 ~~~  182 (244)
T 3ui2_A          180 EGQ  182 (244)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=4.2e-26  Score=175.02  Aligned_cols=124  Identities=23%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHc-CCccccccCCCCCcHHHHHHhc
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAMR  126 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~  126 (247)
                      |.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+.. ++++ +..|..|+||||+|+..
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHc
Confidence            555555555555555555555555554 44555555555555555555555555555 4444 44555555555555555


Q ss_pred             CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876          127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       127 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                      |+.+++++|+++|++++..+..|.|||++|+..++.++++.+...++
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            55555555555555555555555555555555555555555544443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.1e-25  Score=156.92  Aligned_cols=107  Identities=25%  Similarity=0.281  Sum_probs=62.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      |.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcC
Confidence            555555555555555555555555554 455555555555555555555555555555555 455555555666655555


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      +.+++++|+++|++++..|..|.|||++|
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            55566665555555555555555665555

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1e-25  Score=167.85  Aligned_cols=137  Identities=25%  Similarity=0.208  Sum_probs=120.5

Q ss_pred             ccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC-CCCCcHHHHH
Q 025876           45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLA  123 (247)
Q Consensus        45 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A  123 (247)
                      +..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            3458999999999999999999999 8887 889999999999999999999999999999998 5555 8999999999


Q ss_pred             HhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeecc
Q 025876          124 AMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMM  200 (247)
Q Consensus       124 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l  200 (247)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..++..                .+.+|+++++..+....+..|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~----------------~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT----------------PKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTC----------------CCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCc----------------ccccHHHHHHHcCHHHHHHHH
Confidence            9999999999999999999999999999999999865542                456788888866655554444

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3.7e-25  Score=154.20  Aligned_cols=118  Identities=22%  Similarity=0.255  Sum_probs=105.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876            9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL   88 (247)
Q Consensus         9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~   88 (247)
                      +..|.|+||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence            467899999999999999999999999876   566778999999999999999999999999998 8899999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHH
Q 025876           89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV  131 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  131 (247)
                      |+..|+.+++++|++.++++ +..|..|+||||+|...+..++
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHHH
Confidence            99999999999999999998 7899999999999954444433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=4.6e-26  Score=170.06  Aligned_cols=136  Identities=13%  Similarity=0.061  Sum_probs=119.2

Q ss_pred             CccccC-CCCchHHHHHHHcCCH----HHHHHHHhcCchhhhccccccCCCcHHHHHHhcCC------HHHHHHHHhcCC
Q 025876            4 GAREHD-EDSTHKLYEASLRGSV----RSLNTLMQSDSLILRKTSLTSLRETPLHISALLGH------LDFTKALLNHKP   72 (247)
Q Consensus         4 ~~~~~~-~~~~~~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~------~~~~~~Ll~~~~   72 (247)
                      +++..+ ..|+||||+|+..|+.    +++++|++.|+++   +..|..|+||||+|+..|+      .+++++|++.|+
T Consensus        29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga  105 (186)
T 3t8k_A           29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI---KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA  105 (186)
T ss_dssp             SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS---SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC
Confidence            455566 6799999999999985    5899999999988   6667889999999999987      688999999999


Q ss_pred             cchhcccCCCC-cHHHHHHhcC-----CHHHHHHHHH-cCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccc
Q 025876           73 ELAKELDSLKH-SPLHLAAAEG-----HVQIVKELLL-ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSAL  144 (247)
Q Consensus        73 ~~~~~~~~~g~-t~l~~A~~~g-----~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  144 (247)
                      ++ +.+|..|. ||||+|+..+     ..+++++|+. .|+++ +..|..|+||||+|+..|+.+++++|.++..+.+.
T Consensus       106 di-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          106 DI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             CS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred             CC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            98 88999999 9999999954     3579999999 99999 79999999999999999999999999975443333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.6e-25  Score=174.42  Aligned_cols=164  Identities=22%  Similarity=0.149  Sum_probs=132.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      .++++.++..|+.+.+..+...+...      +..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..
T Consensus        16 ~~~~l~~~~~g~~~~~~~~~~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~   87 (244)
T 3ui2_A           16 AMEYLIEWKDGHSPSWVPSSYIAADV------VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGL   87 (244)
T ss_dssp             EEEEEEEESSCCCCEEEEGGGSCHHH------HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHH
T ss_pred             ccHHHHHHHcCCCccccccccccccc------ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHC
Confidence            33444444445544444433333322      2348999999999999999999999 8887 88999999999999999


Q ss_pred             CCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876           93 GHVQIVKELLLANKDACLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus        93 g~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      |+.+++++|++.|+++ +..+ ..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.         
T Consensus        88 g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~---------  157 (244)
T 3ui2_A           88 GSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT---------  157 (244)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT---------
T ss_pred             CCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc---------
Confidence            9999999999999999 4555 8899999999999999999999999999999999999999999874332         


Q ss_pred             cccccccCCccchhhHHHhhcccceeeccc
Q 025876          172 AAWLDWTLSICYPKHLTIETRGAVAILMMP  201 (247)
Q Consensus       172 ~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~  201 (247)
                             ..+.+|+|+|+..+....+..|.
T Consensus       158 -------~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          158 -------TPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             -------CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             -------cCCCCHHHHHHHcChHHHHHHHH
Confidence                   46789999999877665555443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=3.9e-25  Score=177.18  Aligned_cols=144  Identities=16%  Similarity=0.133  Sum_probs=122.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhc---cccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchhcccCCCCc
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRK---TSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~---~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      ...++|+.|+..|+.+.+++|+..+.++...   ...+..|.||||+|+..   |+.+++++|++.|+++ +..|..|.|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            3457899999999999999999999877331   01467799999999997   8999999999999998 889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      |||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999998 78999999999999999999999999997765      578999999988763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=2.9e-25  Score=170.38  Aligned_cols=138  Identities=21%  Similarity=0.267  Sum_probs=114.1

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhc-CCcchhcccCCCCcH
Q 025876            7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSP   85 (247)
Q Consensus         7 ~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~   85 (247)
                      ..+..|.|+||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++. |+++ +..|..|.||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tp  143 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTA  143 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCH
Confidence            34667899999999999999999999999877   55677899999999999999999999998 8887 8899999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCC
Q 025876           86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG  149 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g  149 (247)
                      ||+|+..|+.+++++|+..|+++ +..|..|+|||++|+..++.++++.|+..++.....+..+
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999998 7899999999999999999999999999888877765543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=5.7e-27  Score=192.79  Aligned_cols=176  Identities=14%  Similarity=0.129  Sum_probs=142.4

Q ss_pred             CchHHHHHHH-cCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc--hhcccCCCCcHHHH
Q 025876           12 STHKLYEASL-RGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL--AKELDSLKHSPLHL   88 (247)
Q Consensus        12 ~~~~L~~A~~-~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~   88 (247)
                      +.+++++|.. .++.+.++++++++.+          +.||||+|+..|+.+++++|++.|+..  ....+..|.||||+
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~----------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~  134 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIK----------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL  134 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCC----------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCC----------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHH
Confidence            4557777776 5788888888877653          459999999999999999999998722  01235567899999


Q ss_pred             HHhcCCHHHHHHHHHcCCcc--ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccc--cccCCCcHHHHHH-hcCCcc
Q 025876           89 AAAEGHVQIVKELLLANKDA--CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSAL--VKFHGDTVLHFKA-EHLSLC  163 (247)
Q Consensus        89 A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~l~~A~-~~~~~~  163 (247)
                      |+..|+.+++++|+++|++.  .+..+.. +||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+
T Consensus       135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence            99999999999999999741  0122222 8999999999999999999999999887  8889999999999 999999


Q ss_pred             eeeccccccccccccCCccchhhHHHhhcccceeeccccCC
Q 025876          164 TQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVG  204 (247)
Q Consensus       164 ~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  204 (247)
                      ++++|++.++.      |.||+|.|+..+....+..|.+.+
T Consensus       214 iv~~Ll~~ga~------~~taL~~Aa~~g~~evv~lL~~~g  248 (376)
T 2aja_A          214 VINFLLDCPVM------LAYAEIHEFEYGEKYVNPFIARHV  248 (376)
T ss_dssp             HHHHHTTSHHH------HHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHhCCCc------cchHHHHHHHCCCHHHHHHHHhcC
Confidence            99999987643      899999999888877666665543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=7.9e-24  Score=167.75  Aligned_cols=166  Identities=14%  Similarity=0.059  Sum_probs=137.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhcCch-------hh---------------hc-cc-----cccCCCcHHHHHHhcC
Q 025876            8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSL-------IL---------------RK-TS-----LTSLRETPLHISALLG   59 (247)
Q Consensus         8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~-------~~---------------~~-~~-----~~~~g~t~L~~A~~~g   59 (247)
                      .|..+.+.++.+...|+....+.+...-+.       ..               .. ..     .+....++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            466788899999999987776665432110       00               00 00     0011246899999999


Q ss_pred             CHHHHHHHHhcCCcch-----hcccCCCCcHHHHHHhc---CCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHH
Q 025876           60 HLDFTKALLNHKPELA-----KELDSLKHSPLHLAAAE---GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV  131 (247)
Q Consensus        60 ~~~~~~~Ll~~~~~~~-----~~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  131 (247)
                      +.+.++.++..|.++.     +..+..|.||||+|+..   |+.+++++|+++|+++ +..|..|+||||+|+..|+.++
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~  220 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAEC  220 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999998852     34488899999999999   8999999999999998 7899999999999999999999


Q ss_pred             HHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc
Q 025876          132 VQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW  174 (247)
Q Consensus       132 v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  174 (247)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|++.++.
T Consensus       221 v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999988763

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=3e-23  Score=170.05  Aligned_cols=144  Identities=22%  Similarity=0.228  Sum_probs=90.6

Q ss_pred             CCCchHHHHHHHc-CCHHHHHHHHhcCchhhhccccc--cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876           10 EDSTHKLYEASLR-GSVRSLNTLMQSDSLILRKTSLT--SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL   86 (247)
Q Consensus        10 ~~~~~~L~~A~~~-g~~~~~~~Ll~~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   86 (247)
                      ..+.|+||.|+.. |+.+++++|++.|++++   ..+  ..|.||||+|+..|+.+++++|++.|+++ +..|..|.|||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn---~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL  272 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVN---WVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL  272 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT---CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC---ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            3455677777777 77777777777777652   233  55777777777777777777777777776 66777777777


Q ss_pred             HHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC---CCccccccCCCcHHHHHHh
Q 025876           87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN---FDSALVKFHGDTVLHFKAE  158 (247)
Q Consensus        87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~g~t~l~~A~~  158 (247)
                      |+|+..|+.+++++|+.+|+++ +..|..|+||||+|+..|+.+++++|+..+   .+....+..+.|+++.+..
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            7777777777777777777777 567777777777777777777777777643   2223334455666655543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.7e-22  Score=160.06  Aligned_cols=128  Identities=20%  Similarity=0.199  Sum_probs=117.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhc---cccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRK---TSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHSP   85 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~---~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~   85 (247)
                      ..++|+.|+..|+.+.++.++..+.+....   ...|..|.||||+|+..   |+.+++++|++.|+++ +..|..|.||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCH
Confidence            457899999999999999999999875321   33467799999999999   8999999999999998 8899999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 025876           86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD  141 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  141 (247)
                      ||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999998 78999999999999999999999999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.5e-22  Score=133.88  Aligned_cols=91  Identities=45%  Similarity=0.674  Sum_probs=64.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      |.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence            667777777777777777777777666 666677777777777777777777777777666 566677777777777777


Q ss_pred             cHHHHHHHHHcCC
Q 025876          128 RVEVVQELISANF  140 (247)
Q Consensus       128 ~~~~v~~Ll~~~~  140 (247)
                      +.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            7777777776665

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=7.4e-23  Score=140.70  Aligned_cols=108  Identities=32%  Similarity=0.401  Sum_probs=80.4

Q ss_pred             cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 025876           44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA  123 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  123 (247)
                      .|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            3555777777777777777777777777776 667777777777777777777777777777776 56777777888888


Q ss_pred             HhcCcHHHHHHHHHcCCCccccccCCCcHH
Q 025876          124 AMRGRVEVVQELISANFDSALVKFHGDTVL  153 (247)
Q Consensus       124 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l  153 (247)
                      +..++.+++++|+++|++++..+..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            777777888888777777777777777663

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=4.5e-22  Score=131.53  Aligned_cols=93  Identities=31%  Similarity=0.457  Sum_probs=86.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      +|+||||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            4899999999999999999999999887   566788999999999999999999999999998 889999999999999


Q ss_pred             hcCCHHHHHHHHHcCCc
Q 025876           91 AEGHVQIVKELLLANKD  107 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~  107 (247)
                      ..|+.+++++|++.|++
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999998863

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.6e-22  Score=165.70  Aligned_cols=140  Identities=17%  Similarity=0.068  Sum_probs=117.5

Q ss_pred             CCcHHHHHHhc-CCHHHHHHHHhcCCcchhccc--CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876           48 RETPLHISALL-GHLDFTKALLNHKPELAKELD--SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA  124 (247)
Q Consensus        48 g~t~L~~A~~~-g~~~~~~~Ll~~~~~~~~~~~--~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  124 (247)
                      +.++||.|+.. |+.+++++|++.|+++ +..+  ..|.||||+|+..|+.+++++|+.+|+++ +..|..|+||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            55799999999 9999999999999998 6667  88999999999999999999999999999 789999999999999


Q ss_pred             hcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccccc----ccCCccchhhHHH
Q 025876          125 MRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD----WTLSICYPKHLTI  189 (247)
Q Consensus       125 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~----~~~~g~~pl~~a~  189 (247)
                      ..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+....    ....+.|+++...
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999987664322    1223455555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=4.4e-22  Score=136.78  Aligned_cols=109  Identities=24%  Similarity=0.296  Sum_probs=99.5

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876            7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL   86 (247)
Q Consensus         7 ~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   86 (247)
                      .+|..|.|+||+|+..|+.+++++|++.+.++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHH
Confidence            47889999999999999999999999999876   556788999999999999999999999999998 88899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCccccccCCCCCcHH
Q 025876           87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPL  120 (247)
Q Consensus        87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  120 (247)
                      |+|+..|+.+++++|+++|+++ +..+..|++|-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence            9999999999999999999999 78888888874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.7e-19  Score=121.86  Aligned_cols=90  Identities=28%  Similarity=0.375  Sum_probs=56.0

Q ss_pred             cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 025876           44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA  123 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  123 (247)
                      .|.+|.|+||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+..|+++ +..|..|+||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence            3444666666666666666666666666655 555666666666666666666666666666655 45666666666666


Q ss_pred             HhcCcHHHHHHH
Q 025876          124 AMRGRVEVVQEL  135 (247)
Q Consensus       124 ~~~~~~~~v~~L  135 (247)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            666666666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=5e-19  Score=120.51  Aligned_cols=93  Identities=24%  Similarity=0.368  Sum_probs=82.9

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS   84 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t   84 (247)
                      ....|.+|.|+||+|+..|+.+++++|++.++++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.|
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t   92 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKT   92 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCc
Confidence            4556788999999999999999999999999877   556778999999999999999999999999997 889999999


Q ss_pred             HHHHHHhcCCHHHHHHH
Q 025876           85 PLHLAAAEGHVQIVKEL  101 (247)
Q Consensus        85 ~l~~A~~~g~~~~~~~L  101 (247)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.004
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 7e-17
 Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           TPLH+++ +GHL   K LL          +    +PLH+AA  GH ++ K LL       
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPS 169
               +D + PLH AA  G   +V+ L+  N +  L    G T LH  A    + T     
Sbjct: 61  AK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 170 NYAAWLDW 177
              A    
Sbjct: 120 EKEASQAC 127

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 5e-15
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 85  PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSAL 144
           PLH+A+  GH+ IVK LL        V++     PLH+AA  G  EV + L+        
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 145 VKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKH 186
                 T LH  A        +L     A  +   +  +   
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 103

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 6e-13
 Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 37/190 (19%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           L+ AS  G +  +  L+Q  +            ETPLH++A  GH +  K LL +K ++ 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 76  KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACL------------------------- 110
            +      +PLH AA  GH  +VK LL  N +  L                         
Sbjct: 61  AK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 111 -------VADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL- 162
                     + G  PLH+AA  G+V V + L+  +        +G T LH    H +L 
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 163 CTQRLPSNYA 172
             + L     
Sbjct: 180 IVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 6e-12
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 37/208 (17%)

Query: 16  LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
           L+ A+  G       L+Q+ + +  K       +TPLH +A +GH +  K LL +     
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAKAKD---DQTPLHCAARIGHTNMVKLLLENNANPN 93

Query: 76  K--------------------------------ELDSLKHSPLHLAAAEGHVQIVKELLL 103
                                             +     +PLH+AA  G V++ + LL 
Sbjct: 94  LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 153

Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL- 162
            +      A ++G  PLH+A     +++V+ L+          ++G T LH  A+   + 
Sbjct: 154 RDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 212

Query: 163 CTQRLPSNYAAWLDWTLSICYPKHLTIE 190
             + L     +    ++    P HL  +
Sbjct: 213 VARSLLQYGGSANAESVQGVTPLHLAAQ 240

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           TPLH+ A  GH+     L+ H   +      + ++PLH+A+  G++++VK  LL ++   
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVK-FLLQHQADV 323

Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
               + G  PLH AA +G  ++V  L+        V   G T L      
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 373

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 9e-11
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            TPLH+++  G++   K  L            L +SPLH AA +GH  IV  LL      
Sbjct: 298 YTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 356

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALV 145
             V   DG  PL +A   G + V   L     +++ V
Sbjct: 357 NEV-SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 392

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 5/170 (2%)

Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
            ++    L+ A    ++  +  L+                 TPLHI+A    ++  ++LL
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN---GYTPLHIAAKQNQVEVARSLL 218

Query: 69  NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
            +      E      +PLHLAA EGH ++V  LL    +  L  ++ G  PLHL A  G 
Sbjct: 219 QYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGH 276

Query: 129 VEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWT 178
           V V   LI            G T LH  + + ++   +    + A ++  
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 5/175 (2%)

Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
            +     L+ A+  G VR    L++ D+             TPLH++    +LD  K LL
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---GLTPLHVAVHHNNLDIVKLLL 185

Query: 69  NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
                         ++PLH+AA +  V++ + LL     +       G  PLHLAA  G 
Sbjct: 186 PRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGH 243

Query: 129 VEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICY 183
            E+V  L+S   +  L    G T LH  A+   +    +   +   +D T  + Y
Sbjct: 244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            +PLH +A  GH D    LL +      E+ S   +PL +A   G++ +   L +   + 
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDET 389

Query: 109 CLVADQD 115
             V   D
Sbjct: 390 SFVLVSD 396

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 68.8 bits (167), Expect = 3e-14
 Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 19/184 (10%)

Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
           + D   +L    L     +L     S + +    +L+      + +          + L 
Sbjct: 11  ENDPQLRLIPWIL---WENLFQHFISANELSL-MTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 69  NHKPELAKELDSLK----------HSPLHLAAAEGHVQIVK--ELLLANKDACLVADQDG 116
            +     +    L                +AA  G    +    LLL + +   V   + 
Sbjct: 67  LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126

Query: 117 RIPLHLAAMRGRVEVVQELIS--ANFDSALVKFHGDTVLHFKAEHLSL-CTQRLPSNYAA 173
                LAA  G + V+  L         A+++          AE+  L    RL      
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186

Query: 174 WLDW 177
               
Sbjct: 187 EATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.4 bits (135), Expect = 5e-10
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 7   EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
           +    S    + A++ G   +L+TL    +       + +       ++A  GHL     
Sbjct: 85  KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 67  LLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELL--LANKDACLVADQDGRIPLHLA 123
           L    P      + +  +    LAA  GH+ ++  L      +   ++  ++       A
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 124 AMRGRVEVVQELISANFDSALVKFHGDTVLH 154
             RG   V+  L+      A  + H      
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGE 235

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.4 bits (127), Expect = 5e-09
 Identities = 15/93 (16%), Positives = 21/93 (22%), Gaps = 11/93 (11%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
                +S   G  D        +              L     E  +  ++ LL      
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLR-------NLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 109 CLVAD----QDGRIPLHLAAMRGRVEVVQELIS 137
            L        D    L LA   G       L+S
Sbjct: 306 ALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 5e-07
 Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 17/115 (14%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
                    G       +  H   L +      H    L+  +G   +V       K  C
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKE-----MHDAFKLSNPDGVFDLV------TKSEC 273

Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK-----FHGDTVLHFKAEH 159
           L         L        ++ ++ L+S     AL          + +L      
Sbjct: 274 LQ-GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 8e-12
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 37/130 (28%)

Query: 49  ETPLHISALLGHLDFTKALLNHKP---------------------------ELAKEL--- 78
            T L  +A  GH++  K LL+                               +   L   
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 79  -------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131
                       +PL LA  + H+ +V+ LL          D DG+  L LA      ++
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 132 VQELISANFD 141
            + L      
Sbjct: 269 AELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 6e-09
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 1/138 (0%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
              L  +     +D  + LL     +  + +    +PLH A       IV+ LLL +   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE-LLLRHGAD 64

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP 168
            ++  ++G  P  LAA+ G V++++  +S   D     F+G T     A +  +   +  
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 169 SNYAAWLDWTLSICYPKH 186
               A ++        + 
Sbjct: 125 YKRGANVNLRRKTKEDQE 142

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 38/129 (29%)

Query: 69  NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLL---ANKDACL--------------- 110
               E  + L     + L  AA +GHV+++K LL    A+ +AC                
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 111 -------------------VADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGD 150
                              V  + G+ PL LA  +  + +VQ L+   + +       G 
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 151 TVLHFKAEH 159
           T L    E 
Sbjct: 255 TALLLAVEL 263

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 43/168 (25%)

Query: 11  DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
           +  H L +A     V  +  L++  + +  +        TPLH +  +   D  + LL H
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE--EGGWTPLHNAVQMSREDIVELLLRH 61

Query: 71  --------------------------------KPELAKELDSLKHSPLHLAAAEGHVQIV 98
                                           K     E D    +    AA  G V+ +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 99  KELLLANKDA---------CLVADQDGRIPLHLAAMRGRVEVVQELIS 137
           K L     +               + G   L  AA +G VEV++ L+ 
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 112 ADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFKAEHLSLCTQRLPSN 170
           A  +    L  A     V++VQ+L+    + +   +  G T LH   +        L   
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 171 YAAWLDWTLSICYPKH 186
           + A             
Sbjct: 61  HGADPVLRKKNGATPF 76

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 2e-11
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
            T LH +A + ++   K L+  K     + D    +P+ LAA EG +++V  L+      
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELI 136
             V D        LA       +V    
Sbjct: 248 EAV-DATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 9/125 (7%)

Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
           SP+ L         + E +   +   ++  +  R  LH  A     E  ++LI       
Sbjct: 2   SPIKLHTEAAGSYAITEPIT-RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 144 LVK--------FHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAV 195
           +             +T L                   A                      
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 196 AILMM 200
            +++ 
Sbjct: 121 GMMVY 125

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 24/77 (31%), Positives = 33/77 (42%)

Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
            + LH AA   ++ IVK L+          D+DG+ P+ LAA  GR+EVV  LI      
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 143 ALVKFHGDTVLHFKAEH 159
             V     T       +
Sbjct: 248 EAVDATDHTARQLAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 6e-08
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 49  ETPLHI-SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
           E+P+ + +   G    T+ +      +         + LH  A+    +  ++L++    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 108 ACLVA-------DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHL 160
            C+ A       D D   PL LA +  R  +V  L+ A  D  +      + LH  A + 
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 161 SLCTQRLPSNYAAWLDWTLSICYPKH 186
                    N          +     
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGM 144

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 50  TPLHISALLGHLDFTKA------------LLNHKPELAKELDSLKHSPLHLAAAEGHVQI 97
           T LH   +   +    A            ++  +    +   + K S  +    E    I
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238

Query: 98  VKELLLANKDACLV--ADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
           ++ L L    A ++   D +G   L++AA  G + +V  L+    D  +    G   + F
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 298

Query: 156 KA 157
            A
Sbjct: 299 GA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 21/148 (14%), Positives = 44/148 (29%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           E  L         +   +L N       E  S      H++      ++         + 
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP 168
            +  D+ G  PLH       +E+V+ L+    +       G++ L    + ++       
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 169 SNYAAWLDWTLSICYPKHLTIETRGAVA 196
                +L   L +    + TI     + 
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHIIIT 187

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA 90
           +T L+I+A LG++    ALL++  +     +     P+   A
Sbjct: 260 DTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           TPLH +A     +    LL          D  + + +H AAA+G+++++  LL       
Sbjct: 105 TPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163

Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
            + D +G  PLHLA    RVE  + L+S      +      T L      L L  +R+
Sbjct: 164 -IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 32/146 (21%)

Query: 52  LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQI-------------- 97
           +   A  G L+  K  +     LA   D    + LH A + GH +I              
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 98  ------------------VKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
                             + + LL         +Q+G  PLH AA + R E+   L+   
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 140 FDSALVKFHGDTVLHFKAEHLSLCTQ 165
            +      +  T +H  A   +L   
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMI 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 23/93 (24%), Positives = 36/93 (38%)

Query: 86  LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALV 145
           +   A  G ++ +KE +LA+K      DQD R  LH A   G  E+V+ L+         
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 146 KFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWT 178
              G + LH  A        +      A ++  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 99

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
           TPLH++     ++  K L++    +  E +  + +PL +A   G   I+K ++
Sbjct: 171 TPLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQVAK-GGLGLILKRMV 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 5e-10
 Identities = 19/45 (42%), Positives = 22/45 (48%)

Query: 85  PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
           PLH A  E     V+ELL +     L  DQDGRIPLH +      
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQ 96
           PLH + +       + LL+ KP L  + D     PLH + +    +
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 48

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
           + PLH +A +G L   + L           D    +PL  A AEGH      L+      
Sbjct: 139 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 198

Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
             + D  G     +A      +V +  ++   D+
Sbjct: 199 YDLVDNKGAKAEDVAL---NEQVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 119 PLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFKAEHLSLCTQRLPSNYAAWLDW 177
           PLH A M      VQEL+ +     L K   G   LH+     +        +    ++ 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 178 TLSICYPKH 186
                    
Sbjct: 63  DDYPDDSGW 71

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.6 bits (127), Expect = 4e-09
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 68  LNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
           LN              + LH+AAA+G+ +++K L+ A  D   + D DG  PLH AA  G
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWG 243

Query: 128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHL 160
           + E  + L+    D   V   G T      E +
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 84  SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131
           +    A + G  + V  LL    D    A+ DG   LH A +   V++
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
           TPLH +A  G  +  + L+ +  ++ + ++ +  +   + A E  +  ++EL 
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDV-ADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 12/72 (16%), Positives = 20/72 (27%)

Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW 174
           D       A   G  E V  L+    D       G T LH      ++   +      A 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 175 LDWTLSICYPKH 186
           ++   +  +   
Sbjct: 99  INQPDNEGWIPL 110

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 6e-09
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 49  ETPLHISALLGHLDFTKALLNHK--PELAKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
           +T LH++ +  H  F   LL      E     + L  + LHLAA  G    V++ L A  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK-LYAAG 68

Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
              LVA++ G   LHLA           L+     
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS 103

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF---HGDTVLHFKAEHLSLCTQRLPS 169
            +DG   LHLA +      +  L+  +     +      G T LH  A      T     
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 170 NYAAWLDWTLSICYP 184
              A +       + 
Sbjct: 66  AAGAGVLVAERGGHT 80

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
            +PLHLA       +++ LL A  D        GR PL  A +R    + + L + 
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 49  ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
            TPLH++         + LL    +          +PL  A    +  + + L 
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLR 245

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 35/188 (18%), Positives = 51/188 (27%), Gaps = 14/188 (7%)

Query: 9   DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
            ED    L+ A +      L+ L+   +          L +T LH++A+LG     + L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 69  NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC---------LVADQDGRIP 119
                     +   H+ LHLA           LL                   D      
Sbjct: 66  AAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 120 LHLAAM----RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL 175
              AA+        E                + G T LH    H      RL  +  A L
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 176 DWTLSICY 183
           +     C 
Sbjct: 185 NKPEPTCG 192

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
            S LH A+  G + +V+ L+ +  D+ L  +     PL +A  R  +++++
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-07
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 50  TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
           T LH++      +  + LL    ++         SPL  A  E +   + +LLL +    
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANV 170

Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
                 G   LH A+ RG + +V+ L+ +  DS+L   H DT L      
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 5e-06
 Identities = 16/100 (16%), Positives = 25/100 (25%), Gaps = 4/100 (4%)

Query: 115 DGRIPLHLAAMRGRVEVVQELIS----ANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN 170
           DG  PLH+A ++G +  V  L++       +  +      T LH           RL   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 171 YAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFFQ 210
             A                    +   L            
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 101

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 6e-06
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 84  SPLHLAAAEGHVQIVKELL--LANKDACL-VADQDGRIPLHLAAMRGRVEVVQELISANF 140
           +PLH+A  +G++  V  L+         L + +   + PLHLA +     VV+ L++A  
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 141 DSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLT 188
               +  HG T  H   EH S    R   + AA     L       LT
Sbjct: 65  SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 112

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 51  PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVK 99
            LH ++  G L   + L+    +     +    +PL +A +   + I++
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKEL---DSLKHSPLHLA 89
          +TPLHI+ + G+L     L+N   +  +EL   ++L+ +PLHLA
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 32/88 (36%)

Query: 96  QIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
           Q++ +LL    +     D+ G   LHLAA   R +  + L+ A  D+      G T LH 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 156 KAEHLSLCTQRLPSNYAAWLDWTLSICY 183
                ++   ++     A          
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDG 90

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 79  DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
           D    +PL LAA EG  +  K LL    +  +  D   R+P  +A+ R   ++V+ L
Sbjct: 153 DDKDETPLFLAAREGSYEASKALLDNFANREIT-DHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 12/37 (32%), Positives = 14/37 (37%)

Query: 65  KALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKEL 101
             LL    EL   +D    + LHLAA        K L
Sbjct: 6   SDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 51  PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACL 110
            LH++++ G+L   + L++   ++  +      + LHLA    +  +V  LL    D   
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 111 VADQDGRIPLHLAAMRGRVEVVQELISANFD 141
           V    G  P  L   R    + Q+L     +
Sbjct: 174 V-TYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 84  SPLHLAAAEGHVQIVKELL--LANKDACL-VADQDGRIPLHLAAM 125
           S LHLA       +  E++  +    A L   +   + PLHLA +
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 6e-04
 Identities = 11/76 (14%), Positives = 15/76 (19%), Gaps = 4/76 (5%)

Query: 115 DGRIPLHLAAMRGRVEVVQELI----SANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN 170
           DG   LHLA +     +  E+I                  T LH                
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 171 YAAWLDWTLSICYPKH 186
                +          
Sbjct: 61  AGCDPELRDFRGNTPL 76

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 21/77 (27%), Positives = 33/77 (42%)

Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
           H+ LHLA+  G++ IV+ L+    D       +GR  LHLA      ++V  L+    D 
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 143 ALVKFHGDTVLHFKAEH 159
             V + G +        
Sbjct: 172 NRVTYQGYSPYQLTWGR 188

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 8/131 (6%)

Query: 14  HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRE---TPLHISALL---GHLDFTKAL 67
           H L EA     +  L         +  K  L +  E   T LH++        L     L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 68  LNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
           + +   L K+      +  +            +LLL  K +  +A++ G  PL +A    
Sbjct: 68  VQNSGNLDKQTGKGSTALHY--CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 128 RVEVVQELISA 138
                + L  A
Sbjct: 126 HEHCEELLTQA 136

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELISA 138
           +  G     LA + GR EVV  + + 
Sbjct: 130 NHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 9e-04
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 113 DQDGRIPLHLAAMRGRVEVVQELIS 137
           D  G  PL LA  RG  ++V  L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 83  HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
            + LH A    H ++V+ L+    D      +  +    ++   G  ++ + L
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.003
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 116 GRIPLHLAAMRGRVEVVQELISA 138
           GR+P+ LA   G  +V + L +A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAA 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-36  Score=233.54  Aligned_cols=199  Identities=21%  Similarity=0.152  Sum_probs=174.1

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876            7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL   86 (247)
Q Consensus         7 ~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   86 (247)
                      .-|++|.||||+||+.|+.+++++|++.+++....+.+|..|.||||+|+..|+.+++++|++.|+++ +..|..|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhh
Confidence            45789999999999999999999999998776555677888999999999999999999999999998 88999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCcc----------------------------------------------ccccCCCCCcHH
Q 025876           87 HLAAAEGHVQIVKELLLANKDA----------------------------------------------CLVADQDGRIPL  120 (247)
Q Consensus        87 ~~A~~~g~~~~~~~Ll~~~~~~----------------------------------------------~~~~~~~g~t~L  120 (247)
                      |+|+..++.+++++|++.....                                              .+..+..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            9999999999999987543211                                              124577899999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCcccc-ccCCCcHHHHHHhcCCcceeeccccccc-cccccCCccchhhHHHhhcccceee
Q 025876          121 HLAAMRGRVEVVQELISANFDSALV-KFHGDTVLHFKAEHLSLCTQRLPSNYAA-WLDWTLSICYPKHLTIETRGAVAIL  198 (247)
Q Consensus       121 ~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~~~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~~~~~~~~  198 (247)
                      |+|+..++.+++++|++.+++.+.. +..|.||||+|++.++.+++++|++.++ ....+..|.||||+|+..+....+.
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999888865 6789999999999999999999888775 4455668999999999999988888


Q ss_pred             ccccCCCh
Q 025876          199 MMPSVGGI  206 (247)
Q Consensus       199 ~l~~~~~~  206 (247)
                      .|++.|+.
T Consensus       243 ~Ll~~Ga~  250 (255)
T d1oy3d_         243 LLRAHGAP  250 (255)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            88877653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-35  Score=222.03  Aligned_cols=190  Identities=21%  Similarity=0.228  Sum_probs=169.5

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH   83 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~   83 (247)
                      +++.+|..|+||||+|+..|+.+++++|+..+...   ...+..+.++++.++..++.+++++|++.+.++ +..|..|.
T Consensus        29 ~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~  104 (223)
T d1uoha_          29 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGC  104 (223)
T ss_dssp             GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCC
T ss_pred             cCcCcCCCCCCHHHHHHHhhhhccccccccccccc---ccccccccccccccccccccchhHHHhccCcee-EeeCCCCC
Confidence            56788999999999999999999999999988766   344566899999999999999999999999987 88999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876           84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC  163 (247)
Q Consensus        84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~  163 (247)
                      ||||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.+++++|...+.+++..|..|+||||+|+..|+.+
T Consensus       105 tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~  183 (223)
T d1uoha_         105 TPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE  183 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             chhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHH
Confidence            9999999999999999999999988 788999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccc-ccccCCccchhhHHHhhcccceeec
Q 025876          164 TQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILM  199 (247)
Q Consensus       164 ~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~  199 (247)
                      ++++|++.++. ...+..|+||+|+|. ++....+..
T Consensus       184 ~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~  219 (223)
T d1uoha_         184 EAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKR  219 (223)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhc
Confidence            99999887764 445668999999985 344343333

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.7e-33  Score=214.60  Aligned_cols=168  Identities=21%  Similarity=0.199  Sum_probs=152.0

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc-----------
Q 025876            5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE-----------   73 (247)
Q Consensus         5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-----------   73 (247)
                      ++.+|..|.||||+|+..|+.+++++|++.|+++   +..|..|.||||+|+..++.+++++|++....           
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i---~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  114 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT  114 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccc---cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhh
Confidence            6778899999999999999999999999999877   56678899999999999999999999864211           


Q ss_pred             -----------------------------------chhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCc
Q 025876           74 -----------------------------------LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRI  118 (247)
Q Consensus        74 -----------------------------------~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t  118 (247)
                                                         ..+.++..|.||||+|+..++.+++++|++.++......+..|.|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~T  194 (255)
T d1oy3d_         115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT  194 (255)
T ss_dssp             -----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             HHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccc
Confidence                                               012357889999999999999999999999999886667889999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc
Q 025876          119 PLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL  175 (247)
Q Consensus       119 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  175 (247)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+..
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             cccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999999999999999999863

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6e-32  Score=206.13  Aligned_cols=189  Identities=24%  Similarity=0.271  Sum_probs=168.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHh
Q 025876           12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA   91 (247)
Q Consensus        12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~   91 (247)
                      ..+.|+.+|..|+.+.++.++..++...  +..|..|+||||+|+..|+.+++++|+..+... ...+..+.++++.++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~--~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcC--cCcCCCCCCHHHHHHHhhhhccccccccccccc-cccccccccccccccc
Confidence            4578999999999999999988776443  566888999999999999999999999998877 6667888999999999


Q ss_pred             cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876           92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus        92 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      .++.+++++|+.+++++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|...
T Consensus        80 ~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            99999999999999988 78999999999999999999999999999999999999999999999999999999988766


Q ss_pred             cc-cccccCCccchhhHHHhhcccceeeccccCC
Q 025876          172 AA-WLDWTLSICYPKHLTIETRGAVAILMMPSVG  204 (247)
Q Consensus       172 ~~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  204 (247)
                      +. ....+..|+||||.|+..+....+..|++.+
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHCC
Confidence            65 4456668999999999988877777666543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=6.6e-31  Score=207.71  Aligned_cols=176  Identities=22%  Similarity=0.231  Sum_probs=154.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA   90 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~   90 (247)
                      .+.|+|+.||..|+.++|++|+++|+++   +..|..|.||||+|+..|+.+++++|++.+.+. ...+..+.+||+.|+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv---n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAA  114 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccc
Confidence            4569999999999999999999999887   566788999999999999999999999999887 677888999999999


Q ss_pred             hcCCHHHHHHHHHcCCccc-----------------------------------------------------------cc
Q 025876           91 AEGHVQIVKELLLANKDAC-----------------------------------------------------------LV  111 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~~-----------------------------------------------------------~~  111 (247)
                      ..++.++++.|+..+....                                                           ..
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            9999999999997764331                                                           13


Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHh
Q 025876          112 ADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIE  190 (247)
Q Consensus       112 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~  190 (247)
                      .+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++++.. ..+..|.||||+|++
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999888887644 445689999999874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.1e-31  Score=208.94  Aligned_cols=194  Identities=15%  Similarity=0.118  Sum_probs=161.4

Q ss_pred             CccccC-CCCchHHHHHHHcCCHHHHHHHH--------hcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc
Q 025876            4 GAREHD-EDSTHKLYEASLRGSVRSLNTLM--------QSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL   74 (247)
Q Consensus         4 ~~~~~~-~~~~~~L~~A~~~g~~~~~~~Ll--------~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   74 (247)
                      ++|..| ..|+||||+||..|+.++++.|+        +.|+++   +..|.+|.||||+|+..|+.+++++|+++|+++
T Consensus        24 ~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv---n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~  100 (277)
T d2fo1e1          24 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP  100 (277)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc---cccCCCCCeeecccccccccccccccccccccc
Confidence            455556 35999999999999999998775        446665   566788999999999999999999999999998


Q ss_pred             hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCcc----------------------------------------------
Q 025876           75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA----------------------------------------------  108 (247)
Q Consensus        75 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~----------------------------------------------  108 (247)
                       +..+..|.||+++|+..++.++++.+.......                                              
T Consensus       101 -n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (277)
T d2fo1e1         101 -TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR  179 (277)
T ss_dssp             -CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred             -ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccc
Confidence             888999999999999999988888775421100                                              


Q ss_pred             ccccCCCCCcHHHHHHhcCcHHHHHHHH-HcCCCccccccCCCcHHHHHHhcCCcceeeccccccc-cccccCCccchhh
Q 025876          109 CLVADQDGRIPLHLAAMRGRVEVVQELI-SANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA-WLDWTLSICYPKH  186 (247)
Q Consensus       109 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~-~~~~~~~g~~pl~  186 (247)
                      ....+..|+||||+++..++.+++++++ ..+.+.+..|..|+||||+|+..|+.+++++|++.++ ....+..|.||||
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~  259 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ  259 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             ccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHH
Confidence            0134567999999999999999998765 4788888899999999999999999999999988775 4456778999999


Q ss_pred             HHHhhcccceeeccc
Q 025876          187 LTIETRGAVAILMMP  201 (247)
Q Consensus       187 ~a~~~~~~~~~~~l~  201 (247)
                      +|+..+..+.+.+|.
T Consensus       260 ~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         260 LAQANNHHNIVDIFD  274 (277)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH
Confidence            999888776666554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-31  Score=202.22  Aligned_cols=188  Identities=21%  Similarity=0.215  Sum_probs=155.1

Q ss_pred             CCchHHHHHHHcCCHHHHHH----HHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876           11 DSTHKLYEASLRGSVRSLNT----LMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL   86 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~----Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   86 (247)
                      +|.||||+|+..|+.+++..    +...+..+   +.+|..|+||||+|+..|+.+++++|++.|+++ +..|..|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i---n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL---NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC---CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc---ccCCCCCCccccccccccccccccccccccccc-ccccccccccc
Confidence            58999999999999755554    44456555   567788999999999999999999999999998 88899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCcc-----ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcccc-ccCCCcHHHHHHhcC
Q 025876           87 HLAAAEGHVQIVKELLLANKDA-----CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALV-KFHGDTVLHFKAEHL  160 (247)
Q Consensus        87 ~~A~~~g~~~~~~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~  160 (247)
                      +.|+..++.++++.|+..+...     .......|.||||.|+..++.+++++|+..++.++.. +..|.||||+|+..|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc
Confidence            9999999999999999875442     2344566899999999999999999999999998887 467999999999999


Q ss_pred             Ccceeeccccccccc-cccCCccchhhHHHhhcccceeecccc
Q 025876          161 SLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPS  202 (247)
Q Consensus       161 ~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~  202 (247)
                      +.+++++|++.++.. ..+..|+||+|+|+..+....+..+.+
T Consensus       157 ~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         157 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             cHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999998877644 566689999999987666555554443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.8e-30  Score=196.41  Aligned_cols=185  Identities=17%  Similarity=0.125  Sum_probs=118.7

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc-hhcccCCC
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL-AKELDSLK   82 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~-~~~~~~~g   82 (247)
                      +++.+|.+|.||||+|+..|+.+++++|++.++++......+..|.+|+|+++..+..++++.++..+... ....+..+
T Consensus        26 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (229)
T d1ixva_          26 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG  105 (229)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTS
T ss_pred             cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34455555666666666666666666666555544333344445556666666666665555555554332 12344556


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCccccccCCCcHHHHHHhcCC
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDSALVKFHGDTVLHFKAEHLS  161 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~  161 (247)
                      .|+++.++..++.++++.|+..+... ...+..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++
T Consensus       106 ~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         106 VTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc
Confidence            66677777777777777777776666 566777777888888777777777777765 5667777777888888887777


Q ss_pred             cceeecccc-cc-ccccccCCccchhhHHH
Q 025876          162 LCTQRLPSN-YA-AWLDWTLSICYPKHLTI  189 (247)
Q Consensus       162 ~~~~~~l~~-~~-~~~~~~~~g~~pl~~a~  189 (247)
                      .+++++|+. .+ +....+..|+||||+|+
T Consensus       185 ~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         185 GDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             HHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             HHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            777777663 34 45556667778887776

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.2e-30  Score=183.13  Aligned_cols=153  Identities=24%  Similarity=0.335  Sum_probs=142.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG   93 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g   93 (247)
                      ++||+||..|+.+++++|+++|+++   +..|..|.||||+|+ .|+.+++++|++.++++ +..+..|.++++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~---n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc---CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccc
Confidence            7999999999999999999999987   566788999999886 78999999999999998 888999999999999999


Q ss_pred             CHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC-CccccccCCCcHHHHHHhcCCcceeecccccc
Q 025876           94 HVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANF-DSALVKFHGDTVLHFKAEHLSLCTQRLPSNYA  172 (247)
Q Consensus        94 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  172 (247)
                      ..++++.|+..+... +..+..|.+|+++|+..++.+++++|++++. +.+.+|..|.||||+|++.++.+++++|+++|
T Consensus        78 ~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          78 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999888 7889999999999999999999999999875 78888999999999999999999999988764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-29  Score=178.96  Aligned_cols=150  Identities=27%  Similarity=0.311  Sum_probs=139.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      .|||+.|++.|+.++++.|++.|++..    .|..|.||||+|+..++.++++.++...... ...+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~----~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc----cccCCCccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            489999999999999999999998652    4677999999999999999999999988776 66778888999999999


Q ss_pred             CCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876           93 GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP  168 (247)
Q Consensus        93 g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  168 (247)
                      .+.+++++++..+.+. ...+..|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999988 68899999999999999999999999999999999999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-29  Score=179.99  Aligned_cols=151  Identities=25%  Similarity=0.310  Sum_probs=138.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      +.|+.||..|+.++|++|++.+. ++   +..|..|.||||+|+. |+.+++++|++.+.++ +..+..|.+|++.++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~---n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP---DALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC---CccCCCCCcccccccc-cccccccccccccccc-ccccccccccccccccc
Confidence            45999999999999999998754 43   5667889999999875 8899999999999997 78889999999999999


Q ss_pred             CCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876           93 GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus        93 g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      ++.++++++++.++++ +..+..|+||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-ccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999988 788999999999999999999999887 5899999999999999999999999999988765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-29  Score=192.47  Aligned_cols=166  Identities=20%  Similarity=0.159  Sum_probs=150.1

Q ss_pred             CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc-----hhcc
Q 025876            4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL-----AKEL   78 (247)
Q Consensus         4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~-----~~~~   78 (247)
                      ++|.+|..|+||||+|+..|+.+++++|++.|+++   ...|..|.||||.|+..|+.++++.|+..+...     ....
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~---~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  107 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             CcccCCCCCCccccccccccccccccccccccccc---cccccccccccccccccccccccchhhhhccccccccccccc
Confidence            57889999999999999999999999999999877   556778999999999999999999999876432     2334


Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHh
Q 025876           79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAE  158 (247)
Q Consensus        79 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~  158 (247)
                      ...|.||+|.|+..++.+++++|+..+.......+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~  187 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG  187 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT
T ss_pred             ccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHH
Confidence            56789999999999999999999999998866667789999999999999999999999999999999999999999999


Q ss_pred             cCCcceeecccccc
Q 025876          159 HLSLCTQRLPSNYA  172 (247)
Q Consensus       159 ~~~~~~~~~l~~~~  172 (247)
                      .++.+++++|.+..
T Consensus       188 ~~~~~~~~~l~~~~  201 (221)
T d1iknd_         188 RPSTRIQQQLGQLT  201 (221)
T ss_dssp             SSCHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHcC
Confidence            99999999887654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.5e-29  Score=188.59  Aligned_cols=189  Identities=20%  Similarity=0.153  Sum_probs=163.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc--hhcccCCCCcHHHHHH
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL--AKELDSLKHSPLHLAA   90 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~   90 (247)
                      .+|||+||..|+.+.++.|+..++...  ...|.+|.||||+|+..|+.+++++|++.|+++  ....+..|.+|+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            379999999999999999998766433  556778999999999999999999999999875  2356788999999999


Q ss_pred             hcCCHHHHHHHHHcCCcc-ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccc
Q 025876           91 AEGHVQIVKELLLANKDA-CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPS  169 (247)
Q Consensus        91 ~~g~~~~~~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  169 (247)
                      ..+..++++.++..+... ....+..+.|+++.++..++.+++++|+..+...+..+..|+||||+|+..++.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccc
Confidence            999999999998887643 2456778999999999999999999999999999999999999999999999999999888


Q ss_pred             cccc--cccccCCccchhhHHHhhcccceeeccccC
Q 025876          170 NYAA--WLDWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       170 ~~~~--~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      ..+.  ....+..|.||||+|+..+....+..|++.
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  194 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK  194 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHh
Confidence            7653  345667899999999988877777766643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=201.82  Aligned_cols=178  Identities=28%  Similarity=0.319  Sum_probs=149.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      .||||.||..|+.++|++|++.|+++   +..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i---n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHc
Confidence            48999999999999999999999877   556777999999999999999999999999987 88899999999999999


Q ss_pred             CCHHHHHHHHHcCCccc--------------------------------cccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 025876           93 GHVQIVKELLLANKDAC--------------------------------LVADQDGRIPLHLAAMRGRVEVVQELISANF  140 (247)
Q Consensus        93 g~~~~~~~Ll~~~~~~~--------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  140 (247)
                      |+.+++++|+....+..                                ...+..+.++++.|+..++.+++++|+++++
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999886544321                                2345678889999999999999999999999


Q ss_pred             CccccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhccc
Q 025876          141 DSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGA  194 (247)
Q Consensus       141 ~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~  194 (247)
                      +++..+..|.+||++|+..++.+++++|+..+.. ...+..|.||+|.+......
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~  211 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV  211 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchh
Confidence            9999988999999999999999999988776653 34445678888887765443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=185.49  Aligned_cols=181  Identities=21%  Similarity=0.211  Sum_probs=152.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHh----cCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876           10 EDSTHKLYEASLRGSVRSLNTLMQ----SDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSP   85 (247)
Q Consensus        10 ~~~~~~L~~A~~~g~~~~~~~Ll~----~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~   85 (247)
                      ++|.||||+||..|+.++++.|++    .+.++   +..|..|.||||+|+..|+.+++++|++.|+.. +..+..|.++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i---n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CccCCCCCccceehhcccccccccccccccccc-cccccccccc
Confidence            469999999999999999999885    55555   556778999999999999999999999999887 6777888888


Q ss_pred             HHHHHhcCCHHHHHHHHHcC-------------------------------------CccccccCCCCCcHHHHHHhcCc
Q 025876           86 LHLAAAEGHVQIVKELLLAN-------------------------------------KDACLVADQDGRIPLHLAAMRGR  128 (247)
Q Consensus        86 l~~A~~~g~~~~~~~Ll~~~-------------------------------------~~~~~~~~~~g~t~L~~A~~~~~  128 (247)
                      ++.|...++.++++.+....                                     ..........+.++|+.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            88888888877777655422                                     22222445678999999999999


Q ss_pred             HHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc-cccccCCccchhhHHHhhccc
Q 025876          129 VEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA-WLDWTLSICYPKHLTIETRGA  194 (247)
Q Consensus       129 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~-~~~~~~~g~~pl~~a~~~~~~  194 (247)
                      ..+++.+++.+...+.++..|.||||+|+..|+.+++++|++.++ ....+..|.||||+|++.+..
T Consensus       157 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             hhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCc
Confidence            999999999999999999999999999999999999999988876 445567899999999876543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2.5e-28  Score=191.20  Aligned_cols=165  Identities=23%  Similarity=0.200  Sum_probs=143.9

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc---------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE---------   73 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~---------   73 (247)
                      .|+|.+|..|.||||+|+..|+.+++++|++.|+++   +..|..|.|||++|+..++.++++++......         
T Consensus        65 advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~---n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          65 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             CCccccCCCCCeeecccccccccccccccccccccc---ccccccccccccchhhhcchhhhhhhhhccccccccccccc
Confidence            378899999999999999999999999999999887   55677899999999999999999888654100         


Q ss_pred             -------------------------------------chhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCC
Q 025876           74 -------------------------------------LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDG  116 (247)
Q Consensus        74 -------------------------------------~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  116 (247)
                                                           .....+..|.||||+++..++.+++++++..........|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCC
Confidence                                                 0012346789999999999999999987765444447889999


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876          117 RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus       117 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|.+
T Consensus       222 ~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.2e-28  Score=188.66  Aligned_cols=195  Identities=21%  Similarity=0.155  Sum_probs=153.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch---------------
Q 025876           11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA---------------   75 (247)
Q Consensus        11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~---------------   75 (247)
                      ++.|+|+.|++.|++++|++|++.|++++..  .+..|.||||+|+..|+.+++++|++.+....               
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~--~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCcc--CCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhh
Confidence            3678999999999999999999999887432  23459999999999999999999987643210               


Q ss_pred             ------------------------------------------------------------hcccCCCCcHHHHHHhcCCH
Q 025876           76 ------------------------------------------------------------KELDSLKHSPLHLAAAEGHV   95 (247)
Q Consensus        76 ------------------------------------------------------------~~~~~~g~t~l~~A~~~g~~   95 (247)
                                                                                  ...+..|.||||+|+..|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence                                                                        01124577888888888888


Q ss_pred             HHHHHHHHc-CCccccccCCCCCcHHHHHHhc----CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876           96 QIVKELLLA-NKDACLVADQDGRIPLHLAAMR----GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN  170 (247)
Q Consensus        96 ~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  170 (247)
                      +++++|+.. ++++ +..+..|.++++.+...    +..+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus       162 ~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~  240 (285)
T d1wdya_         162 EVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHH
Confidence            888888865 4555 67777888777765543    34568888888999999999999999999999999999998874


Q ss_pred             -cc-ccccccCCccchhhHHHhhcccceeeccccCCChhh
Q 025876          171 -YA-AWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITF  208 (247)
Q Consensus       171 -~~-~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~  208 (247)
                       .+ +....+..|.||||+|++.+..+.+..|++.|+...
T Consensus       241 ~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             SSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence             34 455666789999999999999888888887766543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=8e-28  Score=180.90  Aligned_cols=192  Identities=19%  Similarity=0.145  Sum_probs=164.6

Q ss_pred             Cccc-cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            4 GARE-HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         4 ~~~~-~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      |+|. .|.+|.||||+||+.|+.+++++|++.++.+   +..+..+.++++.++..++.....................|
T Consensus        14 din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~---n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (209)
T d1ot8a_          14 ELNATMDKTGETSLHLAARFARADAAKRLLDAGADA---NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG   90 (209)
T ss_dssp             HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTC
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence            4454 4788999999999999999999999999877   45567799999999999998888887776655545567778


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .++.+.+.........+.|...++++ +..+..|+|||++++..+..++++.++..+.+++..|..|.||||+|+..|+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~  169 (209)
T d1ot8a_          91 TTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY  169 (209)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             cccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHH
Confidence            89999999988888999999998888 67889999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccccccc-cccCCccchhhHHHhhcccceeec
Q 025876          163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILM  199 (247)
Q Consensus       163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~  199 (247)
                      +++++|++.++.. ..+..|+||+|+|++.+....+.+
T Consensus       170 ~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         170 EASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            9999888877644 456689999999998877665543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.3e-27  Score=192.00  Aligned_cols=194  Identities=20%  Similarity=0.170  Sum_probs=158.5

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhc------------------------------cccccCCCcHH
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRK------------------------------TSLTSLRETPL   52 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~------------------------------~~~~~~g~t~L   52 (247)
                      .+++..+..|.+||+.|+..|+.+++++|+.+|+++...                              ...+..+.|||
T Consensus       156 ~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            467788889999999999999999999999887654211                              11334467778


Q ss_pred             HHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHH
Q 025876           53 HISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV  132 (247)
Q Consensus        53 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  132 (247)
                      +.|+..+..+++++++..+... +..+..|.||++.|+..++.+++++|++.|+++ +..+..+.||||.++..++.+++
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceee
Confidence            8888888888888888777766 667888889999999999999999999988887 67788888999999999999999


Q ss_pred             HHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceee
Q 025876          133 QELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAIL  198 (247)
Q Consensus       133 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~  198 (247)
                      +++++.|++++.+|..|+||||+|++.|+.+++++|++.|+.. ..+..|.||||+|++.+....+.
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999888877644 44667999999999877655443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.5e-28  Score=172.71  Aligned_cols=151  Identities=19%  Similarity=0.194  Sum_probs=138.4

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcH
Q 025876           50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV  129 (247)
Q Consensus        50 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  129 (247)
                      ++||+||..|+.+++++|+++|+++ +..|..|.||||+|+ .|+.+++++|++.++++ +..+..|.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            8999999999999999999999998 889999999999886 78999999999999998 78899999999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc--cccccCCccchhhHHHhhcccceeeccccC
Q 025876          130 EVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA--WLDWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       130 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~--~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      +++++|+..+.+++..+..|.+|+++|+..++.+++++|++.+.  ....+..|.||+|+|+..+....+..|++.
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999998877664  456677899999999998888777766554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=7.2e-30  Score=206.69  Aligned_cols=194  Identities=16%  Similarity=0.151  Sum_probs=148.0

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHH---HHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhccc--C
Q 025876            6 REHDEDSTHKLYEASLRGSVRSLNT---LMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD--S   80 (247)
Q Consensus         6 ~~~~~~~~~~L~~A~~~g~~~~~~~---Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~--~   80 (247)
                      +.++..|.|+|++|++.|+.+++++   |++.++++   +..|..|.||||+||..|+.+++++|++.|+++ +..+  .
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i---n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~  159 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV---KVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQA  159 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC---C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc---cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-ccccccc
Confidence            4567789999999999999988776   67778776   556677999999999999999999999999987 4444  4


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCccc--cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcccccc-----------
Q 025876           81 LKHSPLHLAAAEGHVQIVKELLLANKDAC--LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF-----------  147 (247)
Q Consensus        81 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-----------  147 (247)
                      .|.||||+|+..|+.+++++|++.++...  +..+..+.||++.|+..|+.+++++|++.|++++..+.           
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  239 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN  239 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHH
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhh
Confidence            68999999999999999999999987652  23345577888889999999999999987654432110           


Q ss_pred             --------------------------------------CCCcHHHHHHhcCCcceeecccccccc------ccccCCccc
Q 025876          148 --------------------------------------HGDTVLHFKAEHLSLCTQRLPSNYAAW------LDWTLSICY  183 (247)
Q Consensus       148 --------------------------------------~g~t~l~~A~~~~~~~~~~~l~~~~~~------~~~~~~g~~  183 (247)
                                                            .+.++++.|+..+..+++++|+..+..      ...+..|+|
T Consensus       240 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T  319 (346)
T d2ajaa1         240 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE  319 (346)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred             HHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCc
Confidence                                                  012456666667777788877665432      122235789


Q ss_pred             hhhHHHhhcccceeeccccC
Q 025876          184 PKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       184 pl~~a~~~~~~~~~~~l~~~  203 (247)
                      |||+|++.+....+.+|++.
T Consensus       320 ~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         320 LLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHHcCcHHHHHHHhCC
Confidence            99999999988888888765

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=6.2e-27  Score=184.65  Aligned_cols=161  Identities=25%  Similarity=0.293  Sum_probs=140.6

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch-------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA-------   75 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~-------   75 (247)
                      .|+|.+|.+|.||||+|+..|+.+++++|++.+.+.   ...+..+.+||+.|+..++.++++.|++.+....       
T Consensus        64 advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~---~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  140 (291)
T d1s70b_          64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD  140 (291)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc---ccccccccccccccccccccchhhcccccCcccccccccCc
Confidence            367889999999999999999999999999999875   4456669999999999999999999997654220       


Q ss_pred             ----------------------------------------------------hcccCCCCcHHHHHHhcCCHHHHHHHHH
Q 025876           76 ----------------------------------------------------KELDSLKHSPLHLAAAEGHVQIVKELLL  103 (247)
Q Consensus        76 ----------------------------------------------------~~~~~~g~t~l~~A~~~g~~~~~~~Ll~  103 (247)
                                                                          ...+..|.||||.|+..|+.+++++|+.
T Consensus       141 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  220 (291)
T d1s70b_         141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (291)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc
Confidence                                                                1134778899999999999999999999


Q ss_pred             cCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876          104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus       104 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      .|+++ +..+..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|++    +++++|.+.
T Consensus       221 ~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         221 ARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             TTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             ceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            99998 7889999999999999999999999999999999999999999999975    456555443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.5e-27  Score=167.87  Aligned_cols=151  Identities=17%  Similarity=0.188  Sum_probs=136.9

Q ss_pred             cHHHHHHhcCCHHHHHHHHhc-CCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCc
Q 025876           50 TPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR  128 (247)
Q Consensus        50 t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  128 (247)
                      ..|+.||..|+.++++.|++. +.++ +..|..|.||||+|+. |+.+++++|+..+.++ +..+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCcccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            459999999999999999986 4565 8899999999999874 8899999999999988 7888999999999999999


Q ss_pred             HHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeeccccC
Q 025876          129 VEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSV  203 (247)
Q Consensus       129 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  203 (247)
                      .++++++++++++++.++..|.||||+|+..|+.+++++|+.+.+....+..|+||+|+|+..+..+.+..|+++
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999999999999999988777777888999999999998888777766653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.9e-27  Score=162.09  Aligned_cols=117  Identities=27%  Similarity=0.340  Sum_probs=55.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC-cHHHHHHhc
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH-SPLHLAAAE   92 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~   92 (247)
                      ++||+|+..|+.+++++|++.|+++   +..|..|.||||.|+ .|+.+++++|++.|+++ +..+..+. ||||+|++.
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~---n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCcc---ccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            4455555555555555555544443   233344555554332 34455555555554444 33333332 345555555


Q ss_pred             CCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876           93 GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI  136 (247)
Q Consensus        93 g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  136 (247)
                      |+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5555555555554444 344445555555555555555555443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-26  Score=183.64  Aligned_cols=180  Identities=13%  Similarity=0.000  Sum_probs=110.8

Q ss_pred             CCcccc-CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCH-------HHHHHHHhcCCcc
Q 025876            3 IGAREH-DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHL-------DFTKALLNHKPEL   74 (247)
Q Consensus         3 ~~~~~~-~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-------~~~~~Ll~~~~~~   74 (247)
                      +|+|.. |..|+||||+||..|+.++|++|++.|+++   +.+|..|.||||.|+..++.       ++++++..   .+
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~---~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~  170 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL  170 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh
Confidence            466655 889999999999999999999999999877   56678899999999987652       34444433   22


Q ss_pred             hhcccCCCCcHHHHHHhcCC----HH--------HHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHH-H--cC
Q 025876           75 AKELDSLKHSPLHLAAAEGH----VQ--------IVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI-S--AN  139 (247)
Q Consensus        75 ~~~~~~~g~t~l~~A~~~g~----~~--------~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~--~~  139 (247)
                       ...|..|+||||.++..+.    ..        ++.+++..+..........+.++++.+........+..+. .  .+
T Consensus       171 -~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         171 -ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             -GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             -hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence             5568889999998876643    22        3344555544443344444555555544433322222211 0  11


Q ss_pred             CCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHH
Q 025876          140 FDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTI  189 (247)
Q Consensus       140 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~  189 (247)
                      ..++.+|..|+||||+|++.|+.+++++|++.++.. ..+..|.|||++|+
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            235667777888888888888888888777766533 34446788887775

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-26  Score=158.79  Aligned_cols=121  Identities=20%  Similarity=0.184  Sum_probs=112.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCC-cHHHHHHhc
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGR-IPLHLAAMR  126 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~  126 (247)
                      +.++||+|+..|+.+++++|++.|+++ +..+..|.||+|+|+ .|+.+++++|++.|+++ +..+..+. ||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            678999999999999999999999998 889999999999775 69999999999999998 56676665 699999999


Q ss_pred             CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876          127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY  171 (247)
Q Consensus       127 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  171 (247)
                      |+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|+..
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999988754

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=5.7e-27  Score=160.47  Aligned_cols=105  Identities=27%  Similarity=0.291  Sum_probs=86.2

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcH
Q 025876           50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV  129 (247)
Q Consensus        50 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  129 (247)
                      |||++|++.|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+..|+++ +..|..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            6788888888888888888888776 677788888888888888888888888888877 67788888888888888888


Q ss_pred             HHHHHHHHcCCCccccccCCCcHHHHH
Q 025876          130 EVVQELISANFDSALVKFHGDTVLHFK  156 (247)
Q Consensus       130 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A  156 (247)
                      +++++|+++|++++.+|..|.||||+|
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHH
Confidence            888888888888888888888888777

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.7e-26  Score=162.11  Aligned_cols=149  Identities=26%  Similarity=0.252  Sum_probs=134.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876           48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG  127 (247)
Q Consensus        48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  127 (247)
                      ..||||.|++.|+.+++++|+++|+++ + .|..|.||||+|+..++.++++.++...... ...+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            349999999999999999999999976 4 6999999999999999999999999988877 567888899999999999


Q ss_pred             cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeec
Q 025876          128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILM  199 (247)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~  199 (247)
                      +.++++++...+++.+.++..|+||||+|+..|+.+++++|++.+... ..+..|.||+|+|+..+..+.+.+
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            999999999999999999999999999999999999999998887744 457789999999998887665543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=170.88  Aligned_cols=129  Identities=24%  Similarity=0.237  Sum_probs=114.7

Q ss_pred             cCCCcHHHHHHhcCCHHHHHHHHhc-CCcchhcccCCCCcHHHHHHhcC----CHHHHHHHHHcCCccccccCCCCCcHH
Q 025876           46 SLRETPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSPLHLAAAEG----HVQIVKELLLANKDACLVADQDGRIPL  120 (247)
Q Consensus        46 ~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~g----~~~~~~~Ll~~~~~~~~~~~~~g~t~L  120 (247)
                      ..|.||||+|+..|+.+++++|+++ |+++ +..+..|.++.+.+...+    ..+++++|++.|+++ +..+..|+|||
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L  223 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPL  223 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCcc
Confidence            3489999999999999999999975 6666 788889988887765553    357999999999998 78899999999


Q ss_pred             HHHHhcCcHHHHHHHHH-cCCCccccccCCCcHHHHHHhcCCcceeecccccccccc
Q 025876          121 HLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD  176 (247)
Q Consensus       121 ~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  176 (247)
                      |+|+..|+.+++++|++ .|++++.+|..|.||||+|++.|+.+++++|++.|+..+
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             chhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999998 589999999999999999999999999999999988653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=155.71  Aligned_cols=120  Identities=22%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876           14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG   93 (247)
Q Consensus        14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g   93 (247)
                      ++|+.|+..|+.+++++|+++|+++   +..|.+|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~---n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc---ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhh
Confidence            3455555555555555555555444   333444555555555555555555555555544 445555555555555555


Q ss_pred             CHHHHHHHHHcCCccccccCCCCCcHHHHH--HhcCcHHHHHHHHH
Q 025876           94 HVQIVKELLLANKDACLVADQDGRIPLHLA--AMRGRVEVVQELIS  137 (247)
Q Consensus        94 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~  137 (247)
                      +.+++++|+++|+++....+..|+|+++++  ...|+.+++++|+.
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            555555555555554222223344444333  23444555555543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.3e-25  Score=154.20  Aligned_cols=122  Identities=23%  Similarity=0.195  Sum_probs=111.9

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcH
Q 025876           50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV  129 (247)
Q Consensus        50 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  129 (247)
                      ++|+.|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++. +..|..|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            6899999999999999999999998 889999999999999999999999999999988 78999999999999999999


Q ss_pred             HHHHHHHHcCCCccccc-cCCCcHHHHH--HhcCCcceeeccccccc
Q 025876          130 EVVQELISANFDSALVK-FHGDTVLHFK--AEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       130 ~~v~~Ll~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~l~~~~~  173 (247)
                      +++++|+++|++++..+ ..+.||++.+  +..|+.+++++|+....
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            99999999999999875 4588887765  67888999999876543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6e-25  Score=165.63  Aligned_cols=160  Identities=20%  Similarity=0.172  Sum_probs=138.2

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC-----------
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK-----------   71 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~-----------   71 (247)
                      .+++.+|..|.||||+|+..|+.+++++|++.++..   +..+..+.++++.|...++.++++.+....           
T Consensus        31 ~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (228)
T d1k1aa_          31 RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN  107 (228)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred             CCCCccCCCCCccceehhcccccccccccccccccc---cccccccccccccccccccccchhhhhhccccccccccccc
Confidence            478899999999999999999999999999998876   344556888999998888888887765531           


Q ss_pred             --------------------------CcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876           72 --------------------------PELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM  125 (247)
Q Consensus        72 --------------------------~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  125 (247)
                                                ..........+.++++.|+..+...+++.++..+... ...+..|.||||+|+.
T Consensus       108 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~  186 (228)
T d1k1aa_         108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASG  186 (228)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc-ccccccCcchHHHHHH
Confidence                                      1111234567889999999999999999999999888 6889999999999999


Q ss_pred             cCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceee
Q 025876          126 RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQR  166 (247)
Q Consensus       126 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  166 (247)
                      .|+.+++++|+++|++++.+|..|.||||+|++.|+.++++
T Consensus       187 ~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999999999999998887764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4e-26  Score=156.21  Aligned_cols=107  Identities=25%  Similarity=0.303  Sum_probs=100.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE   92 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~   92 (247)
                      .|||++|++.|+.+++++|++.|+++   +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~---n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC---CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc---cccccccccccccccccccccccccccccccee-eecccccccchhhhhhc
Confidence            48999999999999999999999877   566788999999999999999999999999998 88999999999999999


Q ss_pred             CCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876           93 GHVQIVKELLLANKDACLVADQDGRIPLHLAA  124 (247)
Q Consensus        93 g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  124 (247)
                      |+.+++++|++.|+++ +..|..|+||||+|.
T Consensus        79 ~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSCVKLLLSKGADK-TVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHHHHHHHTTCCCS-SSSSSSTCCCCCTCS
T ss_pred             Cchhhhhhhhcccccc-eeeCCCCCCHHHHHh
Confidence            9999999999999998 789999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=4.7e-26  Score=184.10  Aligned_cols=170  Identities=14%  Similarity=0.043  Sum_probs=132.0

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch--hcccC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA--KELDS   80 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~--~~~~~   80 (247)
                      .++|..|..|.||||+||+.|+.++|++|++.|+++... ..+..|.||||+|+..|+.+++++|++.|+...  +..+.
T Consensus       117 ~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~-~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~  195 (346)
T d2ajaa1         117 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA-MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE  195 (346)
T ss_dssp             SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH-HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc-ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccC
Confidence            467889999999999999999999999999999876332 223448999999999999999999999987642  23455


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCcccc--------------------------------ccCCC-------------
Q 025876           81 LKHSPLHLAAAEGHVQIVKELLLANKDACL--------------------------------VADQD-------------  115 (247)
Q Consensus        81 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~--------------------------------~~~~~-------------  115 (247)
                      .+.||++.|+..|+.+++++|++.|++...                                .....             
T Consensus       196 ~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~  275 (346)
T d2ajaa1         196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ  275 (346)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHH
T ss_pred             CCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccc
Confidence            677888899999999999999987654310                                00111             


Q ss_pred             ---CCcHHHHHHhcCcHHHHHHHHHcCCC-----ccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876          116 ---GRIPLHLAAMRGRVEVVQELISANFD-----SALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       116 ---g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                         +.++++.|...++.+++++|++.+..     ....+.+|.||||+|++.|+.+++++|++...
T Consensus       276 ~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         276 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             cchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence               23567777788899999999986543     23335578999999999999999999987643

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2e-23  Score=148.89  Aligned_cols=126  Identities=20%  Similarity=0.202  Sum_probs=107.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCchhhhc---cccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876           13 THKLYEASLRGSVRSLNTLMQSDSLILRK---TSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHSPL   86 (247)
Q Consensus        13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~---~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~l   86 (247)
                      ...|+.|++.++...+..++..+.+....   ...+..|.||||+|+..   |+.+++++|++.|+++ +.+|..|.|||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpL   85 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccc
Confidence            34678899999999999999887655322   22356689999999974   6789999999999987 88899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 025876           87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANF  140 (247)
Q Consensus        87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  140 (247)
                      |+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|++.+.
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999988 7889999999999999999999999998543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-24  Score=172.21  Aligned_cols=174  Identities=13%  Similarity=0.025  Sum_probs=107.6

Q ss_pred             cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCH---HHHHHHHHcCCccccccCCCCCcHH
Q 025876           44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHV---QIVKELLLANKDACLVADQDGRIPL  120 (247)
Q Consensus        44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~---~~~~~Ll~~~~~~~~~~~~~g~t~L  120 (247)
                      .|..|+||||+||..|+.+++++|++.|+++ +.+|..|+||||.|+..++.   ..++.++..........|..|+|||
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            3677999999999999999999999999998 88999999999999987652   1222333322222256788999999


Q ss_pred             HHHHhcCc----HH--------HHHHHHHcCCCc-cccccCCCcHHHHHHhcCCcceeeccccc---c-ccccccCCccc
Q 025876          121 HLAAMRGR----VE--------VVQELISANFDS-ALVKFHGDTVLHFKAEHLSLCTQRLPSNY---A-AWLDWTLSICY  183 (247)
Q Consensus       121 ~~A~~~~~----~~--------~v~~Ll~~~~~~-~~~~~~g~t~l~~A~~~~~~~~~~~l~~~---~-~~~~~~~~g~~  183 (247)
                      |+++..+.    ..        ++.++...+... ......+.++++.+...........+...   . ..+..+..|+|
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~T  261 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  261 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCC
Confidence            98875443    22        334444544333 33355556666666554444333322111   1 13456778999


Q ss_pred             hhhHHHhhcccceeeccccCCChhhhHHhhhhhhh
Q 025876          184 PKHLTIETRGAVAILMMPSVGGITFFQESFAERSL  218 (247)
Q Consensus       184 pl~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  218 (247)
                      |||+|++.+....+..|++.+............++
T Consensus       262 pLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl  296 (301)
T d1sw6a_         262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPV  296 (301)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            99999999999999998887766655444443443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.7e-22  Score=151.44  Aligned_cols=162  Identities=21%  Similarity=0.251  Sum_probs=146.4

Q ss_pred             CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876            3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g   82 (247)
                      .+++.++..+.++++.++..++...............  ......+.++.+.+.........+.|...+.++ +..+..|
T Consensus        47 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~  123 (209)
T d1ot8a_          47 ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL--NARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSG  123 (209)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCT--TCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccchhhhhhhhhhcccc-cccCCCC
Confidence            4678889999999999999999998887777655332  233455899999999999999999999999987 7889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876           83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL  162 (247)
Q Consensus        83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  162 (247)
                      .||++.++..+..++++.++..+.++ +..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.
T Consensus       124 ~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         124 KTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999988 78899999999999999999999999999999999999999999999999999


Q ss_pred             ceeecc
Q 025876          163 CTQRLP  168 (247)
Q Consensus       163 ~~~~~l  168 (247)
                      +++++|
T Consensus       203 ~iv~lL  208 (209)
T d1ot8a_         203 DIVRLL  208 (209)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            999876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=5.1e-23  Score=146.78  Aligned_cols=123  Identities=15%  Similarity=0.129  Sum_probs=109.9

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcchh-----cccCCCCcHHHHHHhc---CCHHHHHHHHHcCCccccccCCCCCcHHH
Q 025876           50 TPLHISALLGHLDFTKALLNHKPELAK-----ELDSLKHSPLHLAAAE---GHVQIVKELLLANKDACLVADQDGRIPLH  121 (247)
Q Consensus        50 t~L~~A~~~g~~~~~~~Ll~~~~~~~~-----~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  121 (247)
                      ..|..|++.+....+..++..|.++..     ..+..|.||||+|+..   +..+++++|++.|+++ +..|..|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccc
Confidence            346788899999999999988876522     2367899999999975   6789999999999998 789999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876          122 LAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA  173 (247)
Q Consensus       122 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  173 (247)
                      +|+..|+.+++++|+++|++++..|..|.||||+|++.|+.+++++|++.+.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999987654