Citrus Sinensis ID: 025881

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MGANSIQGQSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccHHHHcHHHHHHHHHHHHHHcccHHHHHHHcHHHHcccccccccHHHHHHcccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccc
ccccccccHHHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHcccccccccccccccccccccccEEEEcccHHcHccHHHHHHHccccccEcEcHHHHHHHHHHcccHHHEEEcHccccHHHcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccc
mgansiqgqSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYdsfnnslggagkplsspvvladmehRQVKTVNSFlaetpestEAMVNAKEAGefaavnvpsdvlqsqSSFLAIShlknnwpmkikiesgtNVCHLLLLIAALVSTITYRTALKIRACKleqgynyssSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
mgansiqgqseLEEGIAERKMVSdlsnriddlkvDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
MGANSIQGQSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNElplrplllVSAFSMLGAYICAITDLTKPT
***************************RIDDLKVDLEWYKEVSRLKNKSYYDSFNN************************************************FAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDL****
****************A**KMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLA**************************************HL*************TNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNY**SLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTK**
**********ELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
**************GI*ERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKP*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
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MGANSIQGQSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
255539873 396 conserved hypothetical protein [Ricinus 0.186 0.116 0.565 7e-06
297739323 371 unnamed protein product [Vitis vinifera] 0.493 0.328 0.294 2e-05
225447366 462 PREDICTED: ankyrin repeat-containing pro 0.493 0.264 0.294 2e-05
255539877328 protein binding protein, putative [Ricin 0.275 0.207 0.382 6e-05
>gi|255539873|ref|XP_002511001.1| conserved hypothetical protein [Ricinus communis] gi|223550116|gb|EEF51603.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 195 QLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAI 240
            L + FNSIAFF S+AL+ IL +ELP++P LL+  FS  GAY+C I
Sbjct: 304 DLFILFNSIAFFTSLALITILTHELPIKPWLLILLFSTTGAYMCLI 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739323|emb|CBI28974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447366|ref|XP_002274771.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539877|ref|XP_002511003.1| protein binding protein, putative [Ricinus communis] gi|223550118|gb|EEF51605.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
pfam13962114 pfam13962, PGG, Domain of unknown function 6e-07
>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function Back     alignment and domain information 
 Score = 46.3 bits (111), Expect = 6e-07
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 19/113 (16%)

Query: 141 TNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIV--DQHPLFIQLVM 198
               + LL++A L++T+T+             GY            +   +   F    +
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFT-----PPGGYWQDDGGHHAGTPILAGKPRRFKAFFV 59

Query: 199 AFNSIAFFLSMALLMILFNEL-----------PLRPLLLVSAFSMLGAYICAI 240
             N+IAF  S+  +++L   +            L  LL +S  S++ A+    
Sbjct: 60  -SNTIAFVASLVAVILLLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGS 111

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PF13962113 PGG: Domain of unknown function 99.93
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 98.59
KOG0514452 consensus Ankyrin repeat protein [General function 98.11
PHA02741169 hypothetical protein; Provisional 98.11
PHA02741169 hypothetical protein; Provisional 98.09
KOG4412226 consensus 26S proteasome regulatory complex, subun 98.05
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 98.03
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 98.01
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 97.99
PHA02736154 Viral ankyrin protein; Provisional 97.96
PHA02743166 Viral ankyrin protein; Provisional 97.87
KOG0510 929 consensus Ankyrin repeat protein [General function 97.78
PHA02878477 ankyrin repeat protein; Provisional 97.77
PHA02736154 Viral ankyrin protein; Provisional 97.76
PHA02859209 ankyrin repeat protein; Provisional 97.74
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 97.72
PHA02743166 Viral ankyrin protein; Provisional 97.67
PHA02874 434 ankyrin repeat protein; Provisional 97.63
PHA02875 413 ankyrin repeat protein; Provisional 97.63
PHA02884300 ankyrin repeat protein; Provisional 97.62
KOG4412226 consensus 26S proteasome regulatory complex, subun 97.6
PHA02874434 ankyrin repeat protein; Provisional 97.6
PHA02791284 ankyrin-like protein; Provisional 97.57
PHA03095471 ankyrin-like protein; Provisional 97.56
PHA02791284 ankyrin-like protein; Provisional 97.54
PHA03100480 ankyrin repeat protein; Provisional 97.54
PHA02795437 ankyrin-like protein; Provisional 97.53
PLN03192823 Voltage-dependent potassium channel; Provisional 97.53
KOG0510 929 consensus Ankyrin repeat protein [General function 97.52
PHA02875 413 ankyrin repeat protein; Provisional 97.5
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 97.49
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 97.45
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 97.42
PHA03095 471 ankyrin-like protein; Provisional 97.33
PHA02878477 ankyrin repeat protein; Provisional 97.33
PHA02876682 ankyrin repeat protein; Provisional 97.32
PHA02946 446 ankyin-like protein; Provisional 97.29
PHA02798489 ankyrin-like protein; Provisional 97.23
PHA02859209 ankyrin repeat protein; Provisional 97.21
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 97.2
KOG0508 615 consensus Ankyrin repeat protein [General function 97.18
PLN03192823 Voltage-dependent potassium channel; Provisional 97.16
PF1360630 Ank_3: Ankyrin repeat 97.14
KOG0512228 consensus Fetal globin-inducing factor (contains a 97.12
PHA02989494 ankyrin repeat protein; Provisional 97.12
PHA02730 672 ankyrin-like protein; Provisional 97.12
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 97.09
PHA03100 480 ankyrin repeat protein; Provisional 97.08
PHA02798 489 ankyrin-like protein; Provisional 97.07
PHA02876 682 ankyrin repeat protein; Provisional 97.06
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 97.02
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 97.01
KOG0514452 consensus Ankyrin repeat protein [General function 96.97
PHA02946 446 ankyin-like protein; Provisional 96.94
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 96.92
KOG0502296 consensus Integral membrane ankyrin-repeat protein 96.92
PHA02884300 ankyrin repeat protein; Provisional 96.84
PHA02792631 ankyrin-like protein; Provisional 96.73
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 96.66
PHA02792 631 ankyrin-like protein; Provisional 96.66
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 96.66
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 96.62
TIGR00870 743 trp transient-receptor-potential calcium channel p 96.56
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 96.55
PHA02730 672 ankyrin-like protein; Provisional 96.52
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 96.47
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 96.35
PHA02917661 ankyrin-like protein; Provisional 96.33
KOG4214117 consensus Myotrophin and similar proteins [Transcr 96.24
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 96.04
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 96.04
PHA02917 661 ankyrin-like protein; Provisional 96.03
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 95.98
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 95.97
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 95.92
KOG0508 615 consensus Ankyrin repeat protein [General function 95.91
PHA02989494 ankyrin repeat protein; Provisional 95.79
KOG0502296 consensus Integral membrane ankyrin-repeat protein 95.78
KOG4214117 consensus Myotrophin and similar proteins [Transcr 95.65
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 95.62
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 95.55
PHA02795437 ankyrin-like protein; Provisional 95.38
TIGR00870 743 trp transient-receptor-potential calcium channel p 95.07
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 94.57
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 94.48
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 94.38
KOG0512228 consensus Fetal globin-inducing factor (contains a 94.29
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 93.35
KOG0522 560 consensus Ankyrin repeat protein [General function 93.27
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 90.99
KOG0705749 consensus GTPase-activating protein Centaurin gamm 90.52
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 90.0
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 89.11
KOG0783 1267 consensus Uncharacterized conserved protein, conta 88.24
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 88.07
PF1360630 Ank_3: Ankyrin repeat 85.28
KOG0521785 consensus Putative GTPase activating proteins (GAP 80.84
>PF13962 PGG: Domain of unknown function Back     alignment and domain information 
Probab=99.93  E-value=9e-26  Score=179.37  Aligned_cols=101  Identities=23%  Similarity=0.296  Sum_probs=83.6

Q ss_pred             cccchhhhhHHHHHHHHHhhhhccccccCCCcCcccCCCCCCCCcccccccccCcccchhHhhhhhHHHHHHHHHHHHHh
Q 025881          137 IESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILF  216 (247)
Q Consensus       137 ~~~~~~~rn~llVVAtLIATvTFqAa~spP~~GG~~q~~~~~~~~~~~~i~~~~~~~F~~F~i~Nt~aF~~Sl~~i~lL~  216 (247)
                      +||++|+||+++|||+||||+|||||+|||  ||+||++. ..|   .+++..++..|++|+++|++||++|+.++++++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpP--GG~~~~~~-~~G---~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~   74 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPP--GGYWQDDD-DAG---TPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI   74 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcccccc-CCC---CchhccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999  99999863 222   255656666899999999999999999888887


Q ss_pred             cCcc------------hhHHHHHHHHHHHHHHHHHHhHh
Q 025881          217 NELP------------LRPLLLVSAFSMLGAYICAITDL  243 (247)
Q Consensus       217 s~~p------------~~~~l~i~l~sM~~aY~~a~~~~  243 (247)
                      ++++            ....+++++.+|++||+++++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   75 SGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5441            12346789999999999998764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 98.79
4gpm_A169 Engineered protein OR264; de novo protein, structu 98.64
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 98.63
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 98.59
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 98.57
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 98.54
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 98.49
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 98.49
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 98.48
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 98.46
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 98.43
1sw6_A327 Regulatory protein SWI6; transcription regulation, 98.43
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 98.42
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 98.41
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 98.39
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 98.39
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 98.39
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 98.38
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 98.38
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 98.37
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 98.37
1awc_B153 Protein (GA binding protein beta 1); complex (tran 98.36
3deo_A183 Signal recognition particle 43 kDa protein; chloro 98.35
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 98.35
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 98.34
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 98.33
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 98.33
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 98.33
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 98.33
3deo_A183 Signal recognition particle 43 kDa protein; chloro 98.32
4gpm_A169 Engineered protein OR264; de novo protein, structu 98.32
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 98.32
2rfa_A232 Transient receptor potential cation channel subfa 98.31
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 98.3
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 98.29
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 98.28
3v30_A172 DNA-binding protein rfxank; structural genomics co 98.27
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 98.26
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 98.26
1awc_B153 Protein (GA binding protein beta 1); complex (tran 98.26
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 98.26
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 98.25
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 98.25
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 98.24
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 98.24
3v31_A167 Ankyrin repeat family A protein 2; structural geno 98.23
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 98.23
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 98.23
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 98.22
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 98.22
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 98.21
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 98.21
3v30_A172 DNA-binding protein rfxank; structural genomics co 98.21
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 98.2
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 98.2
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 98.2
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 98.18
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 98.18
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 98.17
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 98.16
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 98.15
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 98.15
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 98.14
3jxi_A260 Vanilloid receptor-related osmotically activated p 98.14
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 98.14
3v31_A167 Ankyrin repeat family A protein 2; structural geno 98.13
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 98.13
2etb_A256 Transient receptor potential cation channel subfam 98.12
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 98.12
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 98.11
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 98.11
2pnn_A273 Transient receptor potential cation channel subfa 98.1
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 98.09
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 98.08
2pnn_A273 Transient receptor potential cation channel subfa 98.08
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 98.07
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 98.07
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 98.07
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 98.07
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 98.06
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 98.06
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 98.05
2etb_A256 Transient receptor potential cation channel subfam 98.05
3jxi_A260 Vanilloid receptor-related osmotically activated p 98.04
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 98.04
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 98.04
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 98.03
3hra_A201 Ankyrin repeat family protein; structural protein; 98.02
3hra_A201 Ankyrin repeat family protein; structural protein; 98.02
2rfa_A232 Transient receptor potential cation channel subfa 98.01
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 98.0
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 97.96
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 97.94
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 97.92
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 97.91
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 97.9
1n11_A 437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 97.9
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 97.88
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 97.85
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 97.83
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 97.83
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 97.79
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 97.75
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 97.68
1sw6_A327 Regulatory protein SWI6; transcription regulation, 97.64
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 97.64
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 97.62
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 97.59
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 97.38
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 97.36
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 97.26
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 97.17
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 96.45
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 95.63
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
Probab=98.79  E-value=2e-09  Score=78.38  Aligned_cols=74  Identities=19%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcccccccccccCCCCCCCCCCCCcee-eeecccchHHHHHHhhcCCCC
Q 025881           14 EGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVL-ADMEHRQVKTVNSFLAETPES   92 (247)
Q Consensus        14 ~~~~~~~~~~~~~~~~ealk~Lv~~~~~~~~~~~~~~~~~llN~~~~~~kD~~GNTiL-LAv~~~~~kiv~~Ll~~~~~~   92 (247)
                      +|.+.+ +.|+++++.|.++.|++.             ..-+|     .+|.+|+||| .|+..++.+++++|++.+   
T Consensus         1 ~g~t~L-~~A~~~~~~~~v~~Ll~~-------------g~~~n-----~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---   58 (93)
T 1n0q_A            1 NGRTPL-HLAARNGHLEVVKLLLEA-------------GADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLEAG---   58 (93)
T ss_dssp             --CCHH-HHHHHHTCHHHHHHHHHT-------------TCCTT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred             CCCcHH-HHHHHcCCHHHHHHHHHc-------------CCCCc-----ccCCCCCCHHHHHHHcCCHHHHHHHHHcC---
Confidence            355666 789999999999988752             12378     9999999999 999999999999999764   


Q ss_pred             ccccccccccCCCCccCCC
Q 025881           93 TEAMVNAKEAGEFAAVNVP  111 (247)
Q Consensus        93 ~~v~vn~~N~~G~TALDI~  111 (247)
                        .++|.+|++|.|||+++
T Consensus        59 --a~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A           59 --ADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCTTCCCTTSCCHHHHH
T ss_pred             --CCCCccCCCCCCHHHHH
Confidence              58899999999999984
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 98.73
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 98.7
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 98.63
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 98.57
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 98.5
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 98.47
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 98.44
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 98.43
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 98.42
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 98.41
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 98.33
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 98.32
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 98.31
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 98.29
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 98.28
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 98.27
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 98.19
d1n11a_ 408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 98.17
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 98.09
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 97.99
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 97.97
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 97.93
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 97.91
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 97.9
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 97.86
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 97.82
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 97.77
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 97.77
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 97.73
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 97.68
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 97.62
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 97.62
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 97.61
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 97.57
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 97.42
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 97.38
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 97.25
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 97.15
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1.8e-09  Score=81.64  Aligned_cols=74  Identities=15%  Similarity=0.057  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHhhhcchhhHHHHHHHHHHHhhhcccccccccccCCCCCCCCCCCCcee-eeecccchHHHHHHhhcCCCC
Q 025881           14 EGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVL-ADMEHRQVKTVNSFLAETPES   92 (247)
Q Consensus        14 ~~~~~~~~~~~~~~~~ealk~Lv~~~~~~~~~~~~~~~~~llN~~~~~~kD~~GNTiL-LAv~~~~~kiv~~Ll~~~~~~   92 (247)
                      +|.+-. +.|+.+++.+.++.|++.             ..=+|     .+|.+|+||| +|+.+++.+++++|++.+   
T Consensus        34 ~g~t~l-h~A~~~~~~~~~~~ll~~-------------g~din-----~~d~~g~tpLh~A~~~~~~~~v~~Ll~~G---   91 (118)
T d1myoa_          34 GGRKPL-HYAADCGQLEILEFLLLK-------------GADIN-----APDKHHITPLLSAVYEGHVSCVKLLLSKG---   91 (118)
T ss_dssp             SSCCTT-HHHHHHSTTTHHHHHHHS-------------SCTTT-----CCSSSCSCHHHHHHTTTCCHHHHHHHTTC---
T ss_pred             cccccc-cccccccccccccccccc-------------cceee-----ecccccccchhhhhhcCchhhhhhhhccc---
Confidence            344444 566666676666555431             01256     7777777777 777777777777777542   


Q ss_pred             ccccccccccCCCCccCCC
Q 025881           93 TEAMVNAKEAGEFAAVNVP  111 (247)
Q Consensus        93 ~~v~vn~~N~~G~TALDI~  111 (247)
                        .++|.+|++|.||||++
T Consensus        92 --ad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          92 --ADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             --CCSSSSSSSTCCCCCTC
T ss_pred             --ccceeeCCCCCCHHHHH
Confidence              46777777777777774
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure