Citrus Sinensis ID: 025899

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERDSVATTASPAPSLDGSTKSGRSSEGGRGGRKKTRLATAAAAAAAAVTEAAATPVANPTGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRKGR
cccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEccccccccccccccccHHHHHHHccc
ccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEcccccccEEEEEEccccccccccccEEccccccHHHHcccc
MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIragnitpntslirfsddaldeqkhsIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERdsvattaspapsldgstksgrsseggrggrkkTRLATAAAAAAAAVTEaaatpvanptgmeldlpvdpneptycvcnqvsygemvacdnpnckiewfhfgcvglkeqpkgkwycpdcaalknrrkgr
MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIragnitpntslirFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERdsvattaspapsldgstksgrsseggrggrKKTRLATAAAAAAAAVTEAAATPVANPTGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLkeqpkgkwycpdcaalknrrkgr
MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERDSVATTASPAPSLDgstksgrsseggrggrkktrLataaaaaaaavteaaatpvaNPTGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRKGR
*************LPNILQKKYALLRDL*************************IRAGNITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNF***********************************************************************LPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAAL*******
MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRC*****************************************EKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERDSVATTASPAPSL*************************************************DLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCA*********
MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELR*****************************************************ATPVANPTGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRKGR
MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRR**************************************************************ELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAA********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFLDEFQANLESLPNIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRAGNITPNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHxxxxxxxxxxxxxxxxxxxxxVATTASPAPSLDGSTKSGRSSEGGRGGRKKTRLATAAAAAAAAVTEAAATPVANPTGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRKGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
Q9LIQ6234 PHD finger protein ING1 O yes no 0.951 1.0 0.699 2e-87
Q8C0D7249 Inhibitor of growth prote yes no 0.947 0.935 0.333 4e-38
Q9UNL4249 Inhibitor of growth prote yes no 0.930 0.919 0.324 1e-37
Q5ZKY4249 Inhibitor of growth prote yes no 0.930 0.919 0.324 4e-37
Q9D8Y8240 Inhibitor of growth prote no no 0.890 0.912 0.348 7e-37
Q8WYH8240 Inhibitor of growth prote no no 0.947 0.970 0.348 8e-36
Q3T095248 Inhibitor of growth prote yes no 0.930 0.923 0.329 1e-35
Q9QXV3279 Inhibitor of growth prote no no 0.898 0.792 0.305 8e-31
B3H615262 PHD finger protein ING2 O no no 0.963 0.904 0.32 9e-30
Q66KD5417 Inhibitor of growth prote no no 0.321 0.189 0.625 6e-28
>sp|Q9LIQ6|ING1_ARATH PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 203/246 (82%), Gaps = 12/246 (4%)

Query: 1   MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNIT 60
           MSF +EF+ANL SL ++LQKKYALLRDLDKSLQE QRQNEQRCE+EIED+ R  RAGNIT
Sbjct: 1   MSFAEEFEANLVSLAHVLQKKYALLRDLDKSLQENQRQNEQRCEKEIEDI-RRGRAGNIT 59

Query: 61  PNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERD 120
           PNTSL +FS++ALDEQKHS+RIADEKV LA+QAYDLVD H+QQLDQY+K  DE +R+E++
Sbjct: 60  PNTSLTKFSEEALDEQKHSVRIADEKVTLAMQAYDLVDMHVQQLDQYMKKSDEVIRKEKE 119

Query: 121 SVATTASPAPSLDGSTKSGRSSEGGRGGRKKTRLATAAAAAAAAVTEAAATPVANPTGME 180
           + A T      L+ + K+G + EGGRGGRKKTRLATAA+ AAA+    +       + M+
Sbjct: 120 AAAATLE----LENNGKAGNAGEGGRGGRKKTRLATAASTAAASTGMTS-------SNMD 168

Query: 181 LDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALK 240
           LDLPVDPNEPTYC+CNQVS+GEMVACDN  CKIEWFHFGCVGLKEQPKGKWYCP+CA +K
Sbjct: 169 LDLPVDPNEPTYCICNQVSFGEMVACDNNACKIEWFHFGCVGLKEQPKGKWYCPECATVK 228

Query: 241 NRRKGR 246
             RKGR
Sbjct: 229 KSRKGR 234
Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8C0D7|ING4_MOUSE Inhibitor of growth protein 4 OS=Mus musculus GN=Ing4 PE=1 SV=2 Back     alignment and function description
>sp|Q9UNL4|ING4_HUMAN Inhibitor of growth protein 4 OS=Homo sapiens GN=ING4 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZKY4|ING4_CHICK Inhibitor of growth protein 4 OS=Gallus gallus GN=ING4 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8Y8|ING5_MOUSE Inhibitor of growth protein 5 OS=Mus musculus GN=Ing5 PE=1 SV=1 Back     alignment and function description
>sp|Q8WYH8|ING5_HUMAN Inhibitor of growth protein 5 OS=Homo sapiens GN=ING5 PE=1 SV=1 Back     alignment and function description
>sp|Q3T095|ING4_BOVIN Inhibitor of growth protein 4 OS=Bos taurus GN=ING4 PE=2 SV=1 Back     alignment and function description
>sp|Q9QXV3|ING1_MOUSE Inhibitor of growth protein 1 OS=Mus musculus GN=Ing1 PE=2 SV=1 Back     alignment and function description
>sp|B3H615|ING2_ARATH PHD finger protein ING2 OS=Arabidopsis thaliana GN=ING2 PE=1 SV=1 Back     alignment and function description
>sp|Q66KD5|ING3_XENTR Inhibitor of growth protein 3 OS=Xenopus tropicalis GN=ing3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
356534854242 PREDICTED: inhibitor of growth protein 4 0.975 0.991 0.774 1e-109
255554260242 Inhibitor of growth protein, putative [R 0.983 1.0 0.845 1e-107
255637739239 unknown [Glycine max] 0.963 0.991 0.762 1e-107
356575180239 PREDICTED: inhibitor of growth protein 5 0.963 0.991 0.758 1e-106
225433377235 PREDICTED: PHD finger protein ING1 [Viti 0.939 0.982 0.756 1e-101
449432470239 PREDICTED: PHD finger protein ING1-like 0.971 1.0 0.780 1e-100
224075575246 predicted protein [Populus trichocarpa] 0.987 0.987 0.792 1e-99
388512117247 unknown [Medicago truncatula] 0.991 0.987 0.771 5e-99
217072216247 unknown [Medicago truncatula] 0.991 0.987 0.771 5e-99
388490518245 unknown [Lotus japonicus] 0.995 1.0 0.756 4e-98
>gi|356534854|ref|XP_003535966.1| PREDICTED: inhibitor of growth protein 4-like [Glycine max] Back     alignment and taxonomy information
 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/248 (77%), Positives = 213/248 (85%), Gaps = 8/248 (3%)

Query: 1   MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNIT 60
           MSFL+EFQANL+SLP ILQKKYALLRDLDKSL +IQRQNEQRCEQEIED+ R +R+GNIT
Sbjct: 1   MSFLEEFQANLDSLPVILQKKYALLRDLDKSLHDIQRQNEQRCEQEIEDIRRGVRSGNIT 60

Query: 61  PNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERD 120
           P+TS+IRFSD+ALDEQ HSIR+ADEKVALAVQAYDLVDTHIQ LDQYLK F EE+RRER+
Sbjct: 61  PDTSVIRFSDEALDEQNHSIRVADEKVALAVQAYDLVDTHIQHLDQYLKRFGEEIRRERE 120

Query: 121 SVATTASPAPSLDGSTKSGRSSEG--GRGGRKKTRLATAAAAAAAAVTEAAATPVANPTG 178
           + A T  PA   +G+TKSGR +E   GRGGRKKTR  T   AA    TEA AT  ANPTG
Sbjct: 121 NAAITGVPASGSEGNTKSGRGNESGTGRGGRKKTRQTTVTPAA----TEAQAT--ANPTG 174

Query: 179 MELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAA 238
           M+L+LPVDPNEPTYC CNQVSYG MVACDNPNCKIEWFHFGCVGLKEQPKGKWYC +CAA
Sbjct: 175 MDLELPVDPNEPTYCFCNQVSYGAMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCSNCAA 234

Query: 239 LKNRRKGR 246
            KNRR+G+
Sbjct: 235 TKNRRRGK 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255554260|ref|XP_002518170.1| Inhibitor of growth protein, putative [Ricinus communis] gi|223542766|gb|EEF44303.1| Inhibitor of growth protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255637739|gb|ACU19192.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356575180|ref|XP_003555720.1| PREDICTED: inhibitor of growth protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|225433377|ref|XP_002285610.1| PREDICTED: PHD finger protein ING1 [Vitis vinifera] gi|297741895|emb|CBI33330.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432470|ref|XP_004134022.1| PREDICTED: PHD finger protein ING1-like [Cucumis sativus] gi|449487502|ref|XP_004157658.1| PREDICTED: PHD finger protein ING1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224075575|ref|XP_002304691.1| predicted protein [Populus trichocarpa] gi|222842123|gb|EEE79670.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388512117|gb|AFK44120.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072216|gb|ACJ84468.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388490518|gb|AFK33325.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
TAIR|locus:2076141234 ING1 "AT3G24010" [Arabidopsis 0.504 0.529 0.736 8.3e-81
UNIPROTKB|F1MD09248 ING4 "Inhibitor of growth prot 0.256 0.254 0.666 6.5e-39
UNIPROTKB|Q5ZK36417 ING3 "Inhibitor of growth prot 0.272 0.160 0.686 1.1e-38
ZFIN|ZDB-GENE-031016-1242 ing5a "inhibitor of growth fam 0.252 0.256 0.687 1.1e-38
MGI|MGI:107307249 Ing4 "inhibitor of growth fami 0.256 0.253 0.666 1.3e-38
RGD|1309407249 Ing4 "inhibitor of growth fami 0.256 0.253 0.666 1.3e-38
UNIPROTKB|Q66KD5417 ing3 "Inhibitor of growth prot 0.284 0.167 0.671 1.7e-38
UNIPROTKB|Q7ZX31416 ing3 "Inhibitor of growth prot 0.284 0.168 0.671 1.7e-38
ZFIN|ZDB-GENE-040109-3416 ing3 "inhibitor of growth fami 0.284 0.168 0.671 2.2e-38
UNIPROTKB|E1BQ25418 ING3 "Uncharacterized protein" 0.272 0.160 0.686 2.2e-38
TAIR|locus:2076141 ING1 "AT3G24010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 474 (171.9 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
 Identities = 92/125 (73%), Positives = 110/125 (88%)

Query:     1 MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNIT 60
             MSF +EF+ANL SL ++LQKKYALLRDLDKSLQE QRQNEQRCE+EIED+ R  RAGNIT
Sbjct:     1 MSFAEEFEANLVSLAHVLQKKYALLRDLDKSLQENQRQNEQRCEKEIEDIRRG-RAGNIT 59

Query:    61 PNTSLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEELRRERD 120
             PNTSL +FS++ALDEQKHS+RIADEKV LA+QAYDLVD H+QQLDQY+K  DE +R+E++
Sbjct:    60 PNTSLTKFSEEALDEQKHSVRIADEKVTLAMQAYDLVDMHVQQLDQYMKKSDEVIRKEKE 119

Query:   121 SVATT 125
             + A T
Sbjct:   120 AAAAT 124
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0035064 "methylated histone residue binding" evidence=IDA
UNIPROTKB|F1MD09 ING4 "Inhibitor of growth protein 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK36 ING3 "Inhibitor of growth protein 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031016-1 ing5a "inhibitor of growth family, member 5a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:107307 Ing4 "inhibitor of growth family, member 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309407 Ing4 "inhibitor of growth family, member 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66KD5 ing3 "Inhibitor of growth protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZX31 ing3 "Inhibitor of growth protein 3" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040109-3 ing3 "inhibitor of growth family, member 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ25 ING3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UNL4ING4_HUMANNo assigned EC number0.32420.93080.9196yesno
Q9LIQ6ING1_ARATHNo assigned EC number0.69910.95121.0yesno
Q5ZKY4ING4_CHICKNo assigned EC number0.32420.93080.9196yesno
Q8C0D7ING4_MOUSENo assigned EC number0.33330.94710.9357yesno
Q3T095ING4_BOVINNo assigned EC number0.32940.93080.9233yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
COG5034271 COG5034, TNG2, Chromatin remodeling protein, conta 8e-35
pfam12998104 pfam12998, ING, Inhibitor of growth proteins N-ter 2e-28
pfam0062851 pfam00628, PHD, PHD-finger 8e-10
smart0024947 smart00249, PHD, PHD zinc finger 1e-07
COG0497 557 COG0497, RecN, ATPase involved in DNA repair [DNA 4e-04
>gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information 
 Score =  125 bits (314), Expect = 8e-35
 Identities = 75/267 (28%), Positives = 106/267 (39%), Gaps = 40/267 (14%)

Query: 4   LDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNT 63
           L++   +L ++P+    ++  L ++D  + +I +       Q I  L + I   + T   
Sbjct: 7   LNDITDHLANVPSETDIRFTELSEIDAKVCDIIK----NLRQMISILKKIIDLDSQTYEE 62

Query: 64  SLIRFSDDALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQ-----YLKNFDEELRRE 118
                  +  +    +I I  EK  LA +A  L+  H + LD        +     +   
Sbjct: 63  VEDGLLKEIRELLLKAIYIQKEKSDLADRAEKLLRRHRKLLDDRIAKRPHEKVAARIENC 122

Query: 119 RDSVATTA-----SPAPSLDGSTKSGRSSEGGRGGRKKTRLATAAA-------------- 159
            D+V+        S A    G  +S  SS+G R  + K R                    
Sbjct: 123 HDAVSRLERNSYSSAARRSSGEHRSAASSQGSRHTKLKKRKNIHNLKRRSPELSSKREVS 182

Query: 160 ---------AAAAAVTEAAATP-VANPTGMELDLPVDPNEPTYCVCNQVSYGEMVACDNP 209
                      A  V E        +      D      E  YC C QVSYG+MVACDN 
Sbjct: 183 FTLESPSVPDTATRVKEGNNGGSTKSRGVSSEDNSEG--EELYCFCQQVSYGQMVACDNA 240

Query: 210 NCKIEWFHFGCVGLKEQPKGKWYCPDC 236
           NCK EWFH  CVGLKE PKGKWYCP+C
Sbjct: 241 NCKREWFHLECVGLKEPPKGKWYCPEC 267

Length = 271
>gnl|CDD|221887 pfam12998, ING, Inhibitor of growth proteins N-terminal histone-binding Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 100.0
KOG1973274 consensus Chromatin remodeling protein, contains P 100.0
PF12998105 ING: Inhibitor of growth proteins N-terminal histo 99.93
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.93
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.77
KOG1512381 consensus PHD Zn-finger protein [General function 97.91
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.71
KOG4299 613 consensus PHD Zn-finger protein [General function 97.66
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.56
KOG0954 893 consensus PHD finger protein [General function pre 97.43
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 97.42
KOG0956 900 consensus PHD finger protein AF10 [General functio 97.42
KOG1244336 consensus Predicted transcription factor Requiem/N 97.41
KOG0383 696 consensus Predicted helicase [General function pre 97.36
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 97.11
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 96.55
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 96.51
COG5141 669 PHD zinc finger-containing protein [General functi 95.75
KOG0957 707 consensus PHD finger protein [General function pre 95.07
KOG0957 707 consensus PHD finger protein [General function pre 95.03
KOG2752 345 consensus Uncharacterized conserved protein, conta 93.68
KOG1844 508 consensus PHD Zn-finger proteins [General function 93.38
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 92.17
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 90.62
PF08702146 Fib_alpha: Fibrinogen alpha/beta chain family; Int 90.15
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 89.51
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 86.3
PF1334178 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85 83.32
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 83.32
PF07227 446 DUF1423: Protein of unknown function (DUF1423); In 81.26
PF10497105 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida 80.54
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-40  Score=279.27  Aligned_cols=229  Identities=29%  Similarity=0.482  Sum_probs=157.3

Q ss_pred             cHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025899            3 FLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSIRI   82 (246)
Q Consensus         3 yLe~fle~l~~LP~El~r~l~~IreLD~~~~~~~~~~~~~~~~~l~~~~k~~~~gs~~~~~~~~~l~~~I~~~~~~~~~l   82 (246)
                      .|+||++.|+|+|.|+.+.|++|.++|.++.++++.+.+... ++...+   ++|+++..+.+..|.+.|++.+-.+..+
T Consensus         6 ~Lnd~~d~l~n~P~et~~~~t~l~~iD~k~~d~~k~l~q~~s-i~k~~~---~~~~~t~~e~ed~l~k~i~Ell~~a~~~   81 (271)
T COG5034           6 GLNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMIS-ILKKII---DLDSQTYEEVEDGLLKEIRELLLKAIYI   81 (271)
T ss_pred             HHHHHHHHHHhCChhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHh---hcccCccccchhHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999998888 544433   6899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccccccccCCCCCCC--CCC------CC--CCCCCCCCCC
Q 025899           83 ADEKVALAVQAYDLVDTHIQQLDQYLKNFDEE-----LRRERDSVATTASPAPSL--DGS------TK--SGRSSEGGRG  147 (246)
Q Consensus        83 ~dEKv~LA~q~~dlVd~hirrLD~dl~kfe~e-----L~~e~~~~~~~~~~~~~~--~~~------~~--~~~~~~~~~~  147 (246)
                      +.+|+.||+.+.-++++|+++||..+++...+     ++..............+.  ..+      ..  .|+..+  ..
T Consensus        82 ~~~~~~l~d~~~~l~~Rh~~~~d~~~a~~~h~~~~~~ie~~~~~~s~~~~~~~ss~a~~ss~~~~saassqgs~~t--~~  159 (271)
T COG5034          82 QKEKSDLADRAEKLLRRHRKLLDDRIAKRPHEKVAARIENCHDAVSRLERNSYSSAARRSSGEHRSAASSQGSRHT--KL  159 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchhhhccccccccccccccccCc--hh
Confidence            99999999999999999999999998776543     221111110000000000  000      00  011000  00


Q ss_pred             CCcc-h---hhhhHHHHH----------------HHHhhhhhcCCCCCCCCCCCCCCCCCCCCceeeeCCCCCCCceecC
Q 025899          148 GRKK-T---RLATAAAAA----------------AAAVTEAAATPVANPTGMELDLPVDPNEPTYCVCNQVSYGEMVACD  207 (246)
Q Consensus       148 ~~k~-~---~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd  207 (246)
                      .+++ .   ...++..++                .+.+.++.. ....+...-+......++++||+|++++||+||+||
T Consensus       160 ~~R~n~~~~k~~~p~~~S~r~~~~t~~sp~v~~t~t~v~e~~~-~~s~~~~~vss~d~se~e~lYCfCqqvSyGqMVaCD  238 (271)
T COG5034         160 KKRKNIHNLKRRSPELSSKREVSFTLESPSVPDTATRVKEGNN-GGSTKSRGVSSEDNSEGEELYCFCQQVSYGQMVACD  238 (271)
T ss_pred             HHHHhhcccccCCcchhhhccCCccCCCCCcccchhhhhcccC-CCCccccCcCccccccCceeEEEecccccccceecC
Confidence            0000 0   000010000                001111110 011111112223334678999999999999999999


Q ss_pred             CCCCCCcceecccCCCCccCCCceeCcCCcc
Q 025899          208 NPNCKIEWFHFGCVGLKEQPKGKWYCPDCAA  238 (246)
Q Consensus       208 ~~~C~~~wfH~~Cv~l~~~~~~~w~C~~C~~  238 (246)
                      |.||+++|||+.||||..+|+|+|||+.|..
T Consensus       239 n~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~  269 (271)
T COG5034         239 NANCKREWFHLECVGLKEPPKGKWYCPECKK  269 (271)
T ss_pred             CCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence            9999999999999999999999999999975

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
1wen_A71 Solution Structure Of Phd Domain In Ing1-Like Prote 2e-26
2k1j_A63 Plan Homeodomain Finger Of Tumour Supressor Ing4 Le 2e-25
2vnf_A60 Molecular Basis Of Histone H3k4me3 Recognition By I 3e-25
1weu_A91 Solution Structure Of Phd Domain In Ing1-Like Prote 6e-25
2qic_A62 Crystal Structure Of The Ing1 Phd Finger In Complex 7e-25
2m1r_A63 Phd Domain Of Ing4 N214d Mutant Length = 63 9e-25
1wes_A71 Solution Structure Of Phd Domain In Inhibitor Of Gr 1e-23
1x4i_A70 Solution Structure Of Phd Domain In Inhibitor Of Gr 2e-23
2g6q_A62 Crystal Structure Of Ing2 Phd Domain In Complex Wit 2e-22
2pnx_A55 The Phd Finger Of Ing4 In Complex With An H3k4me3 H 8e-22
3c6w_A59 Crystal Structure Of The Ing5 Phd Finger In Complex 8e-21
2jmi_A90 Nmr Solution Structure Of Phd Finger Fragment Of Ye 7e-18
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein Bac25079 Length = 71 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 177 TGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDC 236
           +G   D+PVDPNEPTYC+C+QVSYGEM+ CDNP+C IEWFHF CVGL  +P+GKW+CP C
Sbjct: 3   SGSSGDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 62
Query: 237 A 237
           +
Sbjct: 63  S 63
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4 Length = 63 Back     alignment and structure
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4 Length = 60 Back     alignment and structure
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein Bac25009 Length = 91 Back     alignment and structure
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A Histone H3k4me3 Peptide Length = 62 Back     alignment and structure
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant Length = 63 Back     alignment and structure
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth Family, Member 1-Like Length = 71 Back     alignment and structure
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth Protein 3 (Ing3) Length = 70 Back     alignment and structure
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With H3k4me3 Peptide Length = 62 Back     alignment and structure
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone Peptide Length = 55 Back     alignment and structure
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With H3k4me3 Peptide Length = 59 Back     alignment and structure
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast Yng1 Protein In Free State Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
1x4i_A70 Inhibitor of growth protein 3; structural genomics 2e-34
1weu_A91 Inhibitor of growth family, member 4; structural g 4e-33
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 4e-33
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 8e-33
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 5e-31
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 1e-30
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 3e-29
2k16_A75 Transcription initiation factor TFIID subunit 3; p 1e-19
4afl_A104 P29ING4, inhibitor of growth protein 4; cell cycle 7e-19
1wem_A76 Death associated transcription factor 1; structura 5e-15
1wew_A78 DNA-binding family protein; structural genomics, P 4e-14
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 4e-12
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 5e-12
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 1e-11
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-11
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 8e-10
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 9e-10
3kv5_D 488 JMJC domain-containing histone demethylation prote 1e-09
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 3e-08
1we9_A64 PHD finger family protein; structural genomics, PH 2e-07
1wee_A72 PHD finger family protein; structural genomics, PH 3e-07
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 7e-07
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 2e-06
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 3e-06
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 4e-06
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 4e-06
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 4e-06
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 4e-06
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 8e-06
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 1e-05
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 2e-05
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 1e-04
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 1e-04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-04
2ro1_A 189 Transcription intermediary factor 1-beta; KAP, TIF 3e-04
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
 Score =  117 bits (294), Expect = 2e-34
 Identities = 40/61 (65%), Positives = 43/61 (70%)

Query: 186 DPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRRKG 245
                 YC+CNQVSYGEMV CDN +C IEWFH+GCVGL E PKGKWYCP C A   RR  
Sbjct: 2   SSGSSGYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGS 61

Query: 246 R 246
           R
Sbjct: 62  R 62
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens} Length = 104 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
4afl_A104 P29ING4, inhibitor of growth protein 4; cell cycle 99.95
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 99.89
1weu_A91 Inhibitor of growth family, member 4; structural g 99.88
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 99.87
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 99.86
1x4i_A70 Inhibitor of growth protein 3; structural genomics 99.85
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 99.85
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 99.84
1wew_A78 DNA-binding family protein; structural genomics, P 99.73
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.61
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.59
1wem_A76 Death associated transcription factor 1; structura 99.55
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.55
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.53
1we9_A64 PHD finger family protein; structural genomics, PH 99.52
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.51
1wee_A72 PHD finger family protein; structural genomics, PH 99.5
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.49
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 99.34
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 99.33
3kv5_D 488 JMJC domain-containing histone demethylation prote 99.32
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 99.31
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 99.3
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 99.28
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.28
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.26
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 99.25
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 99.23
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 99.21
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 99.2
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 99.2
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 99.18
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 99.16
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 99.16
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 99.15
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 99.09
2yt5_A66 Metal-response element-binding transcription facto 99.06
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 99.04
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 98.97
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 98.91
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.91
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.79
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 98.74
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 98.65
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.63
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.61
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.38
3lqh_A 183 Histone-lysine N-methyltransferase MLL; PHD finger 98.32
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 98.14
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 98.09
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.09
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.0
3u5n_A 207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 97.99
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.92
3rsn_A 177 SET1/ASH2 histone methyltransferase complex subun; 97.54
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 97.17
1wil_A89 KIAA1045 protein; ring finger domain, structural g 95.48
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 94.56
2pv0_B 386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 93.76
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 92.62
2xzr_A114 Immunoglobulin-binding protein EIBD; cell adhesion 92.51
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 90.03
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 85.13
2ysl_A73 Tripartite motif-containing protein 31; ring-type 83.7
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 83.41
2zqm_A117 Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9 82.49
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 80.25
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens} Back     alignment and structure
Probab=99.95  E-value=4.6e-28  Score=184.59  Aligned_cols=102  Identities=26%  Similarity=0.507  Sum_probs=93.8

Q ss_pred             CCcHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHHH
Q 025899            1 MSFLDEFQANLESLPNILQKKYALLRDLDKSLQEIQRQNEQRCEQEIEDLMREIRAGNITPNTSLIRFSDDALDEQKHSI   80 (246)
Q Consensus         1 m~yLe~fle~l~~LP~El~r~l~~IreLD~~~~~~~~~~~~~~~~~l~~~~k~~~~gs~~~~~~~~~l~~~I~~~~~~~~   80 (246)
                      ++|||+|+++|+|||.||+|+|++||+||.+++++++++++...+|+.      ..|+++++++...+ .+|++.|.+++
T Consensus         3 ~~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~------~~~~~~~~~r~~~l-~~I~~~~~~~~   75 (104)
T 4afl_A            3 GMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMS------SARSLSSEEKLALL-KQIQEAYGKCK   75 (104)
T ss_dssp             CHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CCSCCCHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCChhhhHHHH-HHHHHHHHHHH
Confidence            479999999999999999999999999999999999999887776543      67888888888888 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025899           81 RIADEKVALAVQAYDLVDTHIQQLDQYLK  109 (246)
Q Consensus        81 ~l~dEKv~LA~q~~dlVd~hirrLD~dl~  109 (246)
                      .++||||+||+++|++||+|++|||.||+
T Consensus        76 ~l~dEKv~lA~~~~dlvdkhirrLD~dla  104 (104)
T 4afl_A           76 EFGDDKVQLAMQTYEMVDKHIRRLDTDLA  104 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999874
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 6e-28
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 2e-25
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 3e-19
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 1e-14
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-12
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-12
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 7e-11
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 1e-08
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 4e-08
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 4e-06
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 1e-05
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.7 bits (248), Expect = 6e-28
 Identities = 41/69 (59%), Positives = 47/69 (68%)

Query: 177 TGMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDC 236
           +G   +  +DPNEPTYC+CNQVSYGEM+ CDN  C IEWFHF CV L  +PKGKWYCP C
Sbjct: 3   SGSSGEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 62

Query: 237 AALKNRRKG 245
                   G
Sbjct: 63  RGDSGPSSG 71
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 99.79
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 99.74
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 99.47
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.42
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 99.35
d1wema_76 Death associated transcription factor 1, Datf1 (DI 99.26
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 99.17
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.14
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 99.1
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 99.04
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.96
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 93.08
d2v89a174 V(D)J recombination-activating protein 2, Rag2 {Mo 91.65
d1weqa_85 PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculu 85.27
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 82.47
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=6.8e-20  Score=128.06  Aligned_cols=66  Identities=61%  Similarity=1.362  Sum_probs=57.1

Q ss_pred             CCCCCCCCCCCCCceeeeCCCCCCCceecCCCCCCCcceecccCCCCccCCCceeCcCCccccccC
Q 025899          178 GMELDLPVDPNEPTYCVCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCPDCAALKNRR  243 (246)
Q Consensus       178 ~~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~C~~~wfH~~Cv~l~~~~~~~w~C~~C~~~~~~~  243 (246)
                      +...+.+.|+++.+||||+++.+++||.|++..|++.|||+.||||+..|.++||||.|+....++
T Consensus         4 gss~~~~~d~~e~~~CiC~~~~~~~~i~c~~~~C~~~wfH~~Cvgl~~~p~~~w~C~~C~~~~gp~   69 (71)
T d1wesa_           4 GSSGEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDSGPS   69 (71)
T ss_dssp             CCSCCSCCCSSSCCCSTTCCCCCSSEECCSCTTCSCCCEETTTTTCSSCCSSCCCCTTTSSCCSCS
T ss_pred             CcCCCCCcCCCCCCEEEeCCCCCCCEEEEECCCCCCcCccCccCCCCcCCCCcEECcCCccccCcC
Confidence            345567788999999999999889999998877887899999999999999999999998765543
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure