Citrus Sinensis ID: 025905

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MEQPSSPGRSPFDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAGSSDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILSVN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHccccEEEEEcccccccccccccEEEEccEEEEEEEEEEEcccHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHccEEEEEEEccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccEEEEEEEccccHcccccccEEEEEcEEEEEEEEEEEcccHHHHHHHccHHHcccccccHHHHHHHHHHHccHHHHHHccEEEEEEEcccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
meqpsspgrspfdyTKCIEEALKFILESHINQTLELDLGLSKDLCSFLlthnvpltagssdtesqypLYKRLASVFHesvtstascgafsniaslnedddlkkrEDWGKLVLKEGSEMIELLKTVNFelhvqepyfTQLKDGLktvegrcavgdynrigsgslilcnKCLVLKVQDVHGYLSFSEMLQAESLAKvlpgiktidEGVQVYRRFYTEEKEKTNGVIAICvtkpaaqpflclaRILSVN
Flexible Loop (DISEMBL)
meqpsspgrspfDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPltagssdtesqyPLYKRLASVFHESVTstascgafsniaslnedddlkkREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAkvlpgiktidEGVQVYRRFYTeekektngvIAICVTKPAAQPFLCLARILSVN
Low Complexity Region (SEG)
MEQPSSPGRSPFDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAGSSDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILSVN
Disordered region (IsUnstruct)
***********FDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAG*****SQYPLYKRLASVFHESVTSTASCGAFSNIASLN****LKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARIL***
Disordered Region (DISOPRED)
************DYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAGSSDTESQYPLYKRLASVFHESVTSTASCGAF*******************KLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILSV*
Disordered Region (DISEMBL)
**********PFDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAGSSDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILSVN
Disordered Region (DISPRO)
**********PFDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNV**TAGSSDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILSVN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQPSSPGRSPFDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAGSSDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILSVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
359495929	398	PREDICTED: uncharacterized protein LOC10	0.987	0.610	0.580	2e-80
224093009	380	predicted protein [Populus trichocarpa]	0.918	0.594	0.569	7e-68
255586386	370	conserved hypothetical protein [Ricinus	0.922	0.613	0.542	3e-65
18396513	244	RNA-binding ASCH domain protein [Arabido	0.906	0.913	0.526	6e-63
21536491	244	unknown [Arabidopsis thaliana]	0.906	0.913	0.522	9e-63
449468876	238	PREDICTED: uncharacterized LOC101221961	0.902	0.932	0.546	2e-62
297828804	240	hypothetical protein ARALYDRAFT_477581 [	0.906	0.929	0.522	3e-62
363808278	400	uncharacterized protein LOC100807259 [Gl	0.947	0.582	0.45	4e-49
449484877	879	PREDICTED: uncharacterized LOC101221961	0.674	0.188	0.558	5e-46
238479547	388	RNA-binding ASCH domain protein [Arabido	0.910	0.577	0.429	2e-43

>gi|359495929|ref|XP_002272151.2| PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera] gi|296081341|emb|CBI17687.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 191/248 (77%), Gaps = 5/248 (2%)

Query: 1   MEQPSSPGRSPFDYTKCIEEALKFILESHINQTLELDLGLSKDLCSFLL-----THNVPL 55
           +E P SP R P D   C+EE +K+ L S +N TLE+DLGLSKD CS LL     T    +
Sbjct: 6   VEGPPSPARPPVDLANCVEELVKYTLYSSVNGTLEIDLGLSKDYCSALLKDDHLTDPTSI 65

Query: 56  TAGSSDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEG 115
           +  S +    YPLYKRL++  + S+ S A    +S +A ++ED  LK++E+W KLV+ +G
Sbjct: 66  STDSFEGVPPYPLYKRLSAALYRSIISGAFWEIYSTMALIHEDSSLKQKEEWNKLVVDKG 125

Query: 116 SEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQ 175
            E++ +LKT++FELHVQEP+F+QLKDGLK +EGRCAVGDYNRIGSG+LIL NKCLVL+VQ
Sbjct: 126 LELVNILKTIDFELHVQEPFFSQLKDGLKIIEGRCAVGDYNRIGSGALILFNKCLVLEVQ 185

Query: 176 DVHGYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQP 235
           DV  Y SFS++L++E LA+VLPG+KTI+EGVQ+YR+FYT+EKE++NGV+AICV KPAAQP
Sbjct: 186 DVRRYASFSQLLESEGLAEVLPGVKTIEEGVQIYRKFYTKEKERSNGVLAICVAKPAAQP 245

Query: 236 FLCLARIL 243
           ++ LA IL
Sbjct: 246 YIFLAYIL 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093009|ref|XP_002309781.1| predicted protein [Populus trichocarpa] gi|222852684|gb|EEE90231.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 135/237 (56%), Positives = 171/237 (72%), Gaps = 11/237 (4%)

Query: 18  IEEALKFILESHINQTLELDLGLSKDLCSFLLTHN----------VPLTAGSSDTESQYP 67
           IEE LKF LESHINQTLE +LGLSKD C  LL  +           P    S D  + YP
Sbjct: 8   IEELLKFTLESHINQTLEFNLGLSKDFCINLLEEDPNDMLCHSTPTPTPTDSFDGVALYP 67

Query: 68  LYKRLASVFHESVTSTASCGAFSNIASLNEDDDLK-KREDWGKLVLKEGSEMIELLKTVN 126
           LYKRLAS  + SV S A C  +  +   ++D +LK K E+W +L+ ++G E+I +L+ ++
Sbjct: 68  LYKRLASALYRSVKSGAVCRTYEKMVFGDKDSNLKQKEENWDQLIKEKGLELINVLEGIS 127

Query: 127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEM 186
            E+HVQEPYF+ LKDG KT+EGRCA GDY RI  G LIL NK +VLKV+DV  Y SFS+M
Sbjct: 128 CEIHVQEPYFSLLKDGRKTIEGRCATGDYIRIEPGDLILVNKIVVLKVEDVRRYASFSKM 187

Query: 187 LQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARIL 243
           LQAE+L KVLPG+KT++EGV++YR+FYTEEKE +NGV+AICV+K AAQP+L LA IL
Sbjct: 188 LQAENLEKVLPGVKTVEEGVKIYRKFYTEEKEMSNGVLAICVSKLAAQPYLSLASIL 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586386|ref|XP_002533840.1| conserved hypothetical protein [Ricinus communis] gi|223526219|gb|EEF28542.1| conserved hypothetical protein [Ricinus communis]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 176/236 (74%), Gaps = 9/236 (3%)

Query: 18  IEEALKFILESHINQTLELDLGLSKDLCSFLL------THNVP--LTAGSSDTESQYPLY 69
           IEE +K+ L SHINQTL  DL LSK+ CS LL      T ++P   T+GS +   +YPL+
Sbjct: 8   IEEIVKYTLNSHINQTLGFDLSLSKEFCSNLLRADPNDTVSLPPNSTSGSFEGVPEYPLF 67

Query: 70  KRLASVFHESVTSTASCGAFSNIASLNEDDDLKKRED-WGKLVLKEGSEMIELLKTVNFE 128
           +RL S  ++ + S + C  +  I  +NED+ LK++E+ W KL+L++GSE++ +L     E
Sbjct: 68  RRLGSALYQCIISRSFCKTYDTIEFINEDNSLKQKEEQWNKLILEKGSELMNVLMATFHE 127

Query: 129 LHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQ 188
           LHVQEP+F+ LKDGLKT+EGRCA  +Y+RI  G+L+L NK +VL+V+DV  Y SF +ML+
Sbjct: 128 LHVQEPFFSLLKDGLKTIEGRCADDNYSRIEPGALLLINKSVVLEVKDVRRYPSFLKMLE 187

Query: 189 AESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILS 244
           AESL+KVLPG+KTI+EGV+VYR+FYTEEKE +NGV+AICV+K   QP+L LAR+LS
Sbjct: 188 AESLSKVLPGVKTIEEGVEVYRKFYTEEKEMSNGVLAICVSKSPYQPYLSLARMLS 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396513|ref|NP_566202.1| RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|6017115|gb|AAF01598.1|AC009895_19 unknown protein [Arabidopsis thaliana] gi|22655129|gb|AAM98155.1| expressed protein [Arabidopsis thaliana] gi|32189307|gb|AAP75808.1| At3g03320 [Arabidopsis thaliana] gi|332640408|gb|AEE73929.1| RNA-binding ASCH domain protein [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 129/245 (52%), Positives = 162/245 (66%), Gaps = 22/245 (8%)

Query: 1   MEQPSSPGRSPFDYTKCIEEALKFILESHINQTL-ELDLGLSKDLCSFLLTHNVPLTAGS 59
           MEQP SPG    D  +C+E  L+F L SH+N+++   DL L++D C  LL         +
Sbjct: 1   MEQPMSPGTKSVDLRECMESLLRFSLRSHLNESVPSFDLDLTRDFCLHLLGE-------A 53

Query: 60  SDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMI 119
           +D+  +  +YK LA+   E + S              E D     E + KL+   G ++I
Sbjct: 54  TDSTEKSAVYKLLATALSECLAS--------------EGDKNSNLEKYSKLIHGLGYDLI 99

Query: 120 ELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHG 179
            +LK VNFELHVQEPYFTQLKDGLKTVEGRCAVGDY RI SG  +L NKCL+L+VQDVH 
Sbjct: 100 NMLKEVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGDFLLFNKCLLLEVQDVHR 159

Query: 180 YLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCL 239
           Y SFSEML+ E LAKVLPG+++I+EGVQVYR FY+EEKE+ NGV+AI V KPA QP   L
Sbjct: 160 YTSFSEMLKVEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNGVVAIRVAKPANQPSAAL 219

Query: 240 ARILS 244
           A +LS
Sbjct: 220 AGVLS 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536491|gb|AAM60823.1| unknown [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 128/245 (52%), Positives = 163/245 (66%), Gaps = 22/245 (8%)

Query: 1   MEQPSSPGRSPFDYTKCIEEALKFILESHINQTL-ELDLGLSKDLCSFLLTHNVPLTAGS 59
           MEQP SPG    D  +C+E  L+F L SH+N+++   DL L++D C  LL         +
Sbjct: 1   MEQPMSPGTKSVDLRECMESLLRFSLRSHLNESVPSFDLDLTRDFCLHLLGE-------A 53

Query: 60  SDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMI 119
           +D+  +  +YK LA+   E + S              E D     E + KL+   G ++I
Sbjct: 54  TDSTEKSAVYKLLATALSECLAS--------------EGDKNSNLEKYSKLIHGLGYDLI 99

Query: 120 ELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHG 179
            +LK VNFELHVQEPYFTQLKDGLKTVEGRCAVGDY RI SG+ +L NKCL+L+VQDVH 
Sbjct: 100 NMLKEVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGAFLLFNKCLLLEVQDVHR 159

Query: 180 YLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCL 239
           Y SFSEML+ E L+KVLPG+++I+EGVQVYR FY+EEKE+ NGV+AI V KPA QP   L
Sbjct: 160 YTSFSEMLKVEGLSKVLPGVESIEEGVQVYRNFYSEEKERMNGVVAIRVAKPANQPSAAL 219

Query: 240 ARILS 244
           A +LS
Sbjct: 220 AGVLS 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468876|ref|XP_004152147.1| PREDICTED: uncharacterized LOC101221961 [Cucumis sativus]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/245 (54%), Positives = 166/245 (67%), Gaps = 23/245 (9%)

Query: 3   QPSSPGRSPFDYTKCIEEALKFILESHINQTLELD--LGLSKDLCSFLLTHNVPLTAGSS 60
           +P SPG SP +   C+EE LKF L+SHIN TL++D  LG S D  S LL HN        
Sbjct: 4   RPCSPGSSPVELRDCLEELLKFTLQSHINGTLDIDHDLGFSTDFSSHLLNHN-------- 55

Query: 61  DTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEG-SEMI 119
           D      LYK L S   +SV S ASCG+          DD +  E+  ++   EG +E++
Sbjct: 56  DCPDVSRLYKDLVSTLLKSV-SKASCGSL---------DDFEDEEESNEIA--EGRAELV 103

Query: 120 ELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHG 179
            +LKTVNFELHVQEP+FTQLKDGLK VEGRCA G+YNRI SG+LIL NKCL+ +VQDV  
Sbjct: 104 NVLKTVNFELHVQEPFFTQLKDGLKRVEGRCAAGNYNRIQSGALILFNKCLLFEVQDVRQ 163

Query: 180 YLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCL 239
           Y SF  ML+AESL  VLPG+KT+ +GVQ+YR FY+EEKE +NGV+ I V K  AQP++ L
Sbjct: 164 YPSFYAMLKAESLDNVLPGVKTLTDGVQIYRNFYSEEKELSNGVLGIHVKKSVAQPYIIL 223

Query: 240 ARILS 244
           ARI+S
Sbjct: 224 ARIIS 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828804|ref|XP_002882284.1| hypothetical protein ARALYDRAFT_477581 [Arabidopsis lyrata subsp. lyrata] gi|297328124|gb|EFH58543.1| hypothetical protein ARALYDRAFT_477581 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/245 (52%), Positives = 163/245 (66%), Gaps = 22/245 (8%)

Query: 1   MEQPSSPGRSPFDYTKCIEEALKFILESHINQTL-ELDLGLSKDLCSFLLTHNVPLTAGS 59
           MEQP+SPG    +  +C+E  L+F L SH+++++   DL L++D C  LL         +
Sbjct: 1   MEQPTSPGTKSVNLRECMESLLRFTLSSHLDESVPSFDLDLTRDFCLHLLEE-------A 53

Query: 60  SDTESQYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMI 119
           +D+  +  +YK LA    E + S              E D+    E + KL    G ++I
Sbjct: 54  TDSTEKPAVYKLLARALSECLAS--------------EGDNNPNLEKYSKLFHGLGHDLI 99

Query: 120 ELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHG 179
            +LK VNFELHVQEPYFTQLKDGLKTVEGRCAVGDY RI SG+ IL NKCL+L+VQDVH 
Sbjct: 100 NMLKKVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYMRISSGAFILFNKCLLLEVQDVHH 159

Query: 180 YLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCL 239
           Y SFSEML  E LAKVLPG+++I+EGVQVYR FY+EEKE+ NGV+AI V KPA QP+  L
Sbjct: 160 YTSFSEMLIMEGLAKVLPGVESIEEGVQVYRNFYSEEKERMNGVLAIHVAKPANQPYAAL 219

Query: 240 ARILS 244
           A +LS
Sbjct: 220 AGVLS 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808278|ref|NP_001242240.1| uncharacterized protein LOC100807259 [Glycine max] gi|255644803|gb|ACU22903.1| unknown [Glycine max]

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/240 (45%), Positives = 156/240 (65%), Gaps = 7/240 (2%)

Query: 11  PFDYTKCIEEALKFILES---HINQTLELDLGLSKDLCSFLLT-HNVPLTAGSSDTESQY 66
           P     C+EE ++F L S   H+N + +    L KD  +   + H++     S +    Y
Sbjct: 18  PVKLCDCLEELVRFTLNSNSHHLNLSSQFFSNLLKDDATHPSSSHSLSQPDDSLEGVPPY 77

Query: 67  PLYKRLASVFHESVTSTASCGAFSNIASLNEDDD---LKKREDWGKLVLKEGSEMIELLK 123
           PLYKR +S   + + S   C   +N+A  +E +D    +KR +W +L++++G E+  +LK
Sbjct: 78  PLYKRFSSALLKCMDSETFCRTGANLAMTDEFEDSSMQQKRNEWHRLIVEKGFEIENILK 137

Query: 124 TVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSF 183
           +V+FE HVQEP+F+QL DGLKT+EGRCA G YNRI SG+LIL NK +V +VQ V  Y +F
Sbjct: 138 SVSFEFHVQEPFFSQLNDGLKTIEGRCATGKYNRIKSGNLILFNKSVVFEVQGVRRYPTF 197

Query: 184 SEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARIL 243
             ML+AESL K LPG+++ +EGV+VY+RF TEEKE+ NGV+AI V+K   QP+  LAR+ 
Sbjct: 198 FAMLEAESLGKGLPGVESSEEGVKVYQRFCTEEKEQANGVLAIVVSKFTPQPYDSLARLF 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484877|ref|XP_004157005.1| PREDICTED: uncharacterized LOC101221961 [Cucumis sativus]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 128/179 (71%), Gaps = 13/179 (7%)

Query: 68  LYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEG-SEMIELLKTVN 126
           ++  L S   +SV S ASCG+          DD +  E+  ++   EG +E++ +LKTVN
Sbjct: 704 IHTDLVSTLLKSV-SKASCGSL---------DDFEDEEESNEIA--EGRAELVNVLKTVN 751

Query: 127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEM 186
           FELHVQEP+FTQLKDGLK VEGRCA G+YNRI SG+LIL NKCL+ +VQDV  Y SF  M
Sbjct: 752 FELHVQEPFFTQLKDGLKRVEGRCAAGNYNRIQSGALILFNKCLLFEVQDVRQYPSFYAM 811

Query: 187 LQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILSV 245
           L+AESL  VLP +KT+ +GVQ+YR FY+EEKE +NGV+ I V K  AQP++ LARI+S 
Sbjct: 812 LKAESLDNVLPEVKTLTDGVQIYRNFYSEEKELSNGVLGIHVKKSVAQPYIILARIISA 870

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479547|ref|NP_001154572.1| RNA-binding ASCH domain protein [Arabidopsis thaliana] gi|330255179|gb|AEC10273.1| RNA-binding ASCH domain protein [Arabidopsis thaliana]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/242 (42%), Positives = 149/242 (61%), Gaps = 18/242 (7%)

Query: 17  CIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAGSSDTES------------ 64
           C++E +KF L    +  +E D+GL+ + CS LL     L  G     S            
Sbjct: 7   CLDEMVKFTL----DYCVEFDIGLTGEFCSGLLCGESVLHDGERIESSSYALLHRFSGVP 62

Query: 65  QYPLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKRED-WGKLVLKEGSEMIELLK 123
            YPLYK LA    +S+ S + CG F  I+   E   LK++ED W KL+ ++GSE++  LK
Sbjct: 63  DYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKLINQKGSELVNALK 122

Query: 124 TVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRI-GSGSLILCNKCLVLKVQDVHGYLS 182
            V  EL VQEP F+ +KDG+KTVE RC   +Y+RI   GS+++ NKCL+ +V ++H Y S
Sbjct: 123 DVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINKCLMFEVLELHQYAS 182

Query: 183 FSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARI 242
           F E+L+AES  KV PG KT++EG+Q++R+ Y  ++E  NGV+AI ++K  AQP + LA I
Sbjct: 183 FYELLKAESSEKVFPGTKTVEEGMQMFRKLYDTDQENFNGVVAIHLSKSVAQPCVALAHI 242

Query: 243 LS 244
           LS
Sbjct: 243 LS 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2099699	244	AT3G03320 "AT3G03320" [Arabido	0.869	0.877	0.512	4.1e-49
TAIR|locus:5019474741	388	AT2G43465 "AT2G43465" [Arabido	0.910	0.577	0.429	1.3e-43

TAIR|locus:2099699 AT3G03320 "AT3G03320" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 119/232 (51%), Positives = 152/232 (65%)

Query:    15 TKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTHN--VPLTAGSSDTESQYPLYKRL 72
             TK ++  L+  +ES +  +L   L  S       LT +  + L   ++D+  +  +YK L
Sbjct:     9 TKSVD--LRECMESLLRFSLRSHLNESVPSFDLDLTRDFCLHLLGEATDSTEKSAVYKLL 66

Query:    73 ASVFHESVTSTASCGAFSNIASLNEDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQ 132
             A       T+ + C     +AS  E D     E + KL+   G ++I +LK VNFELHVQ
Sbjct:    67 A-------TALSEC-----LAS--EGDKNSNLEKYSKLIHGLGYDLINMLKEVNFELHVQ 112

Query:   133 EPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESL 192
             EPYFTQLKDGLKTVEGRCAVGDY RI SG  +L NKCL+L+VQDVH Y SFSEML+ E L
Sbjct:   113 EPYFTQLKDGLKTVEGRCAVGDYMRISSGDFLLFNKCLLLEVQDVHRYTSFSEMLKVEGL 172

Query:   193 AKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARILS 244
             AKVLPG+++I+EGVQVYR FY+EEKE+ NGV+AI V KPA QP   LA +LS
Sbjct:   173 AKVLPGVESIEEGVQVYRNFYSEEKERMNGVVAIRVAKPANQPSAALAGVLS 224

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474741 AT2G43465 "AT2G43465" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 104/242 (42%), Positives = 149/242 (61%)

Query:    17 CIEEALKFILESHINQTLELDLGLSKDLCSFLLTHNVPLTAGSSDTESQY---------- 66
             C++E +KF L+      +E D+GL+ + CS LL     L  G     S Y          
Sbjct:     7 CLDEMVKFTLD----YCVEFDIGLTGEFCSGLLCGESVLHDGERIESSSYALLHRFSGVP 62

Query:    67 --PLYKRLASVFHESVTSTASCGAFSNIASLNEDDDLKKRED-WGKLVLKEGSEMIELLK 123
               PLYK LA    +S+ S + CG F  I+   E   LK++ED W KL+ ++GSE++  LK
Sbjct:    63 DYPLYKVLALGLLKSIDSGSFCGTFEKISLGKEVIRLKEKEDEWSKLINQKGSELVNALK 122

Query:   124 TVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIG-SGSLILCNKCLVLKVQDVHGYLS 182
              V  EL VQEP F+ +KDG+KTVE RC   +Y+RI   GS+++ NKCL+ +V ++H Y S
Sbjct:   123 DVFSELQVQEPLFSLMKDGIKTVEARCFEEEYDRIRRGGSMVMINKCLMFEVLELHQYAS 182

Query:   183 FSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTKPAAQPFLCLARI 242
             F E+L+AES  KV PG KT++EG+Q++R+ Y  ++E  NGV+AI ++K  AQP + LA I
Sbjct:   183 FYELLKAESSEKVFPGTKTVEEGMQMFRKLYDTDQENFNGVVAIHLSKSVAQPCVALAHI 242

Query:   243 LS 244
             LS
Sbjct:   243 LS 244


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      246       246    0.0010  113 3  11 22  0.45    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.09u 0.08s 23.17t   Elapsed:  00:00:02
  Total cpu time:  23.09u 0.08s 23.17t   Elapsed:  00:00:02
  Start:  Sat May 11 08:06:46 2013   End:  Sat May 11 08:06:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
cd06555	109	cd06555, ASCH_PF0470_like, ASC-1 homology domain,	6e-32
COG4043	111	COG4043, COG4043, Preprotein translocase subunit S	2e-23
pfam04266	104	pfam04266, ASCH, ASCH domain	4e-13
smart01022	99	smart01022, ASCH, The ASCH domain adopts a beta-ba	8e-07

>gnl|CDD|119347 cd06555, ASCH_PF0470_like, ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470

 Score =  112 bits (283), Expect = 6e-32
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN-----KCLVLKVQDVHGYL 181
            E+ ++E  F  +K G KT+E R       +I  G  IL N     + L++KV D+  Y 
Sbjct: 1   HEMGLEEEPFELIKSGKKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYD 60

Query: 182 SFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICVTK 230
           SF E+L+ E L KV PG+ +I+EGV+   + Y++E+EK  GV+AI +  
Sbjct: 61  SFRELLEEEGLEKVGPGVDSIEEGVKDTYKIYSKEQEKKYGVLAIEIRV 109

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. Length = 109

>gnl|CDD|226530 COG4043, COG4043, Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]

 Score = 90.6 bits (225), Expect = 2e-23
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNK-CLVLKVQDVHGYLSFSE 185
             + ++E Y   +K G K +E R A     +I  G  I+ N   L ++V DV  Y +F E
Sbjct: 3   HRMGLREEYLELIKAGKKKIEVRLADPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEE 62

Query: 186 MLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAI 226
           ML+ E +  VLP + + +EG++ YR FY  EKEK  GV+AI
Sbjct: 63  MLREEPIENVLPDVPSFEEGLRRYRNFYPSEKEKRYGVLAI 103

Length = 111

>gnl|CDD|217998 pfam04266, ASCH, ASCH domain

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 129 LHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKC------LVLKVQDVHGYLS 182
           L   + Y   +  G KT E R       ++G   LIL           V++V DV     
Sbjct: 1   LSFGQEYADLILSGKKTAEYRLWDEPLPQVG-DLLILFELNGGGRPVGVIEVTDVEII-P 58

Query: 183 FSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAI 226
           F E+ +  +        ++++E  +V+R FY EE E+  GV+ I
Sbjct: 59  FEEVTEEHA----YLEGESLEEWRKVHREFYPEESEEDEGVVVI 98

The ASCH domain adopts a beta-barrel fold similar to the pfam01472 domain. It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation. Length = 104

>gnl|CDD|214979 smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 129 LHVQEPYFTQLKDGLKTVEGRCA------VGDYNRIGSGSLILCNKCLVLKVQDVHGYLS 182
           L  ++     +  G KT   R        VGD   +  G       C V++V  V   + 
Sbjct: 1   LSFKDELADLILSGKKTATIRLENEPLPKVGDLLIVLDGEGK--PVC-VIEVTSV-EIIP 56

Query: 183 FSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKE 218
           F ++         L G  +++E  +V++ FY E+ E
Sbjct: 57  FKDVTAEH---AYLEGEGSLEEWRKVHKEFYPEDME 89

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
cd06555	109	ASCH_PF0470_like ASC-1 homology domain, subfamily	100.0
COG4043	111	Preprotein translocase subunit Sec61beta [Intracel	100.0
cd06541	105	ASCH ASC-1 homology or ASCH domain, a small beta-b	99.84
PF04266	105	ASCH: ASCH domain; InterPro: IPR007374 The ASCH do	99.69
cd06552	100	ASCH_yqfb_like ASC-1 homology domain, subfamily si	99.01
PF12961	72	DUF3850: Domain of Unknown Function with PDB struc	98.49
PRK04980	102	hypothetical protein; Provisional	96.56
COG2411	188	Uncharacterized conserved protein [Function unknow	91.33
COG3097	106	Uncharacterized protein conserved in bacteria [Fun	89.28
cd06553	127	ASCH_Ef3133_like ASC-1 homology domain, subfamily	84.58
PRK11507	70	ribosome-associated protein; Provisional	82.79
COG1935	122	Uncharacterized conserved protein [Function unknow	82.25

>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470

Probab=100.00  E-value=1.2e-40  Score=267.79  Aligned_cols=104  Identities=39%  Similarity=0.579  Sum_probs=101.5

Q ss_pred             eeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcc-----eEEEEEEEEeecCCHHHHHhhcCccccCCCCCC
Q 025905          127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNK-----CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKT  201 (246)
Q Consensus       127 heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e-----~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~S  201 (246)
                      |+|+|+++||++|++|+|||||||||+||++|++||+|+|++     ++.|+|++|++|+||++||+++++++|+|+++|
T Consensus         1 h~m~l~~~~F~~I~~G~KtiEiRlnD~kr~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~sF~~ll~~e~~~~~~~~~~s   80 (109)
T cd06555           1 HEMGLEEEPFELIKSGKKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYDSFRELLEEEGLEKVGPGVDS   80 (109)
T ss_pred             CccccChHHHHHHHcCCCEEEEEecccchhcCCCCCEEEEEEcCCCcEEEEEEEEEEecCCHHHHHHhcCHhhcCCCCCc
Confidence            789999999999999999999999999999999999999974     899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCHhHHhhccEEEEEEec
Q 025905          202 IDEGVQVYRRFYTEEKEKTNGVIAICVTK  230 (246)
Q Consensus       202 iEEgv~~yr~iYskEkE~~yGVvAI~I~~  230 (246)
                      +|+|+++||+|||+|||++||||||+|++
T Consensus        81 ~ee~~~~~~~~Y~~e~e~~~GvlaI~i~~  109 (109)
T cd06555          81 IEEGVKDTYKIYSKEQEKKYGVLAIEIRV  109 (109)
T ss_pred             HHHHHHHHHHhCCHHHHHhcCEEEEEEEC
Confidence            99999999999999999999999999974

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-40  Score=262.37  Aligned_cols=106  Identities=37%  Similarity=0.580  Sum_probs=103.7

Q ss_pred             ceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc-ceEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025905          126 NFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN-KCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE  204 (246)
Q Consensus       126 ~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~-e~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE  204 (246)
                      .|+|+|+++||++|++|+|||||||||+||++||+||+|.|| +.+.|+|++||.|+||++||+.||+++++|+.+|+|+
T Consensus         2 ~~~mgL~eeylE~IK~GkK~iEvRl~d~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlreepiE~v~p~~~S~ee   81 (111)
T COG4043           2 VHRMGLREEYLELIKAGKKKIEVRLADPKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLREEPIENVLPDVPSFEE   81 (111)
T ss_pred             ceeechHHHHHHHHHcccceEEEEecCHhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHHhcChhhhCCCCccHHH
Confidence            489999999999999999999999999999999999999999 8999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhccEEEEEEecC
Q 025905          205 GVQVYRRFYTEEKEKTNGVIAICVTKP  231 (246)
Q Consensus       205 gv~~yr~iYskEkE~~yGVvAI~I~~~  231 (246)
                      ||..||+||++|+|+.|||+||+|+..
T Consensus        82 ~l~~~~~~Y~~~kE~~yGvlaI~ie~i  108 (111)
T COG4043          82 GLRRYRNFYPSEKEKRYGVLAIEIEPI  108 (111)
T ss_pred             HHHHHHHhCcHhHhhccceEEEEEEEc
Confidence            999999999999999999999999864

>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life

Probab=99.84  E-value=5.3e-21  Score=150.15  Aligned_cols=100  Identities=19%  Similarity=0.077  Sum_probs=93.8

Q ss_pred             eeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcc----eEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025905          129 LHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNK----CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE  204 (246)
Q Consensus       129 M~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e----~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE  204 (246)
                      |++.+++|++|.+|+||+|+|+++++++.+++||.|+|.+    .+.++|++|+.|++| +++.++...+.++|..|+++
T Consensus         2 l~~~~~~~~lI~~G~Ktat~r~~~~~~~~~k~Gd~~i~~~~~~~~~~i~v~~V~~~~~f-~~~~~e~a~~eGegd~sl~~   80 (105)
T cd06541           2 LMFGDRYGQLVVSGRKTIEIRSLDIYEQLPKAGDYLIILDGQQPLAIAEVVKVEIMPMV-NELSEEQEQAEGEGDLTLLY   80 (105)
T ss_pred             ceechHHHHHHHCCCCEEEEEcchhcccCCCCCCEEEEecCCCcEEEEEEEEEEEEECH-HHccHHHHHHcCCCchhHHH
Confidence            6789999999999999999999999999999999999987    899999999999999 77777777788888779999


Q ss_pred             HHHHHHhhCCHhHHhhccEEEEEEe
Q 025905          205 GVQVYRRFYTEEKEKTNGVIAICVT  229 (246)
Q Consensus       205 gv~~yr~iYskEkE~~yGVvAI~I~  229 (246)
                      .++.+++||+++++.++||++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~vv~i~F~  105 (105)
T cd06541          81 ELKEHAAFFKEELAPDMLLYAISFE  105 (105)
T ss_pred             HHHHHHHHhhHHhCCCCceEEEEeC
Confidence            9999999999999999999999984

ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.

>PF04266 ASCH: ASCH domain; InterPro: IPR007374 The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain (IPR002478 from INTERPRO)

Probab=99.69  E-value=1.4e-16  Score=121.59  Aligned_cols=98  Identities=26%  Similarity=0.317  Sum_probs=86.5

Q ss_pred             eeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc------ceEEEEEEEEeecCCHHHHHhhcCccccCCCCCCH
Q 025905          129 LHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN------KCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTI  202 (246)
Q Consensus       129 M~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~------e~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~Si  202 (246)
                      |.+.++||++|.+|+||+|+|+.++++..++.++.|+|+      -...++|++|+.+ +|++|.++.....-   . |+
T Consensus         1 Lsi~~~~~~~Il~G~Kt~e~R~~~~~~~~~~g~~~iv~~~~~~~~~~~~v~v~~V~~~-~~~e~~~~~a~~eg---~-s~   75 (105)
T PF04266_consen    1 LSIKPEYAELILSGKKTAEIRLWDEKLPKIRGDLVIVFNTDPDGKPVGIVEVTEVEVY-PFSELTEEHARLEG---E-SL   75 (105)
T ss_dssp             EEECHHHHHHHHTTSSCEEEECSTTTCCTTTTCEEEEETETTTTEEEEEEEEEEEEEE-EHHHHHHHHHHHHC---C--H
T ss_pred             CEechHHHHHHHCCCcEEEEEcccceeccCCCCEEEEEEEecCCcEEEEEEEEEEEEe-hhhhCCHHHHhHhc---c-CH
Confidence            678999999999999999999999999998888888875      3588899999999 99999998655333   2 99


Q ss_pred             HHHHHHHHhhCCHhHHhhccEEEEEEecC
Q 025905          203 DEGVQVYRRFYTEEKEKTNGVIAICVTKP  231 (246)
Q Consensus       203 EEgv~~yr~iYskEkE~~yGVvAI~I~~~  231 (246)
                      ++..+.+++||+++.+...||++|+++++
T Consensus        76 e~~~~~~~~~y~~~~~~~~~v~~i~f~~v  104 (105)
T PF04266_consen   76 EEWREEHRDIYPREIEPDDGVVAIEFEVV  104 (105)
T ss_dssp             HHHHHHHHHHCHHHHHCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHccccccccceEEEEEEEec
Confidence            99999999999999998899999999874

It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation [].; PDB: 1TE7_A 2Z0T_C 1WK2_A 2DP9_A 1T62_A 3S9X_A 2E5O_A 1XNE_A 3IUW_B 1S04_A.

>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb

Probab=99.01  E-value=1.7e-09  Score=82.85  Aligned_cols=94  Identities=18%  Similarity=0.226  Sum_probs=74.2

Q ss_pred             eeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc----ceEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025905          129 LHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN----KCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE  204 (246)
Q Consensus       129 M~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~----e~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE  204 (246)
                      |.+.++++++|.+|+||+++|..+  ++.+++||.+.+.    ....++|++|+. .+|.+ +.++.....  |..|.++
T Consensus         2 ~~f~~~~~~~I~sG~Kt~t~R~~~--~~~~~~Gd~~~~~~~~~~~~~~~v~~V~~-~~~~~-l~~~~A~~e--G~~s~~~   75 (100)
T cd06552           2 ILFFERYEEAILSGKKTATIRDGG--ESHLKPGDVVEVHTGERIFGEAEITSVEE-KTLGE-LTDEDARQE--GFPSLEE   75 (100)
T ss_pred             eechHHHHHHHHcCCCEEEEeCCC--ccCCCCCCEEEEEECCEEEEEEEEEEEEE-EEhhh-CCHHHHHhc--CCccHHH
Confidence            566789999999999999999975  4569999999986    368889999977 88988 455443333  5569999


Q ss_pred             HHHHHHhhCCHhHHhhccEEEEEEe
Q 025905          205 GVQVYRRFYTEEKEKTNGVIAICVT  229 (246)
Q Consensus       205 gv~~yr~iYskEkE~~yGVvAI~I~  229 (246)
                      ..+.++++|+.++.. -=|..|+++
T Consensus        76 ~~~~l~~~Y~~~~~~-~~v~vi~F~   99 (100)
T cd06552          76 LKEALKEIYPGLKDD-DEVYVIEFR   99 (100)
T ss_pred             HHHHHHHHcCCCCCC-CEEEEEEEE
Confidence            999999999987632 227777765

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)

Probab=98.49  E-value=3.7e-07  Score=69.66  Aligned_cols=53  Identities=23%  Similarity=0.381  Sum_probs=46.4

Q ss_pred             eeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc---------ceEEEEEEEEeecCC
Q 025905          127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN---------KCLVLKVQDVHGYLS  182 (246)
Q Consensus       127 heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---------e~l~v~V~~Vr~Y~S  182 (246)
                      |++.+.+.||+.+.+|+||.|+|.||..+   ++||.+.+.         ..+.++|+-|-.|..
T Consensus         1 H~LKi~p~yF~~V~~G~KtfEiRkNDRdf---~VGD~L~L~E~~~~~YTGr~~~~~Ityi~~~~~   62 (72)
T PF12961_consen    1 HELKILPEYFEAVLSGRKTFEIRKNDRDF---QVGDILVLREWDNGEYTGREIEAEITYITDYEQ   62 (72)
T ss_pred             CceeecHHHHHHHHCCCceEEEEecCCCC---CCCCEEEEEEecCCCccccEEEEEEEEEeecCC
Confidence            78999999999999999999999999655   699999985         578899999877543

>PRK04980 hypothetical protein; Provisional

Probab=96.56  E-value=0.026  Score=45.80  Aligned_cols=81  Identities=19%  Similarity=0.252  Sum_probs=58.3

Q ss_pred             eeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEE-c---c--eEEEEEEEEeecCCHHHHHhhcCccccCCCCCC
Q 025905          128 ELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILC-N---K--CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKT  201 (246)
Q Consensus       128 eM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F-~---e--~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~S  201 (246)
                      +|...++|-.+|-+|+||+-+|-  +.-...++||.+.- +   +  -..++|++|. +-+|.+|=+.   .+-.-|. |
T Consensus         4 ~itF~~r~~~~ILsGkKTiTiRd--~se~~~~~G~~~~V~~~e~g~~~c~ieI~sV~-~i~f~eLte~---hA~qEg~-s   76 (102)
T PRK04980          4 KITFFERFEADILAGRKTITIRD--ESESHFKPGDVLRVGTFEDDRYFCTIEVLSVS-PVTFDELNEK---HAEQENM-T   76 (102)
T ss_pred             eeeEHHHHHHHHHcCCceEEeeC--CcccCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEehhhCCHH---HHHHhCC-C
Confidence            46778999999999999999998  44678999999876 2   2  2444565553 3456555433   1112244 8


Q ss_pred             HHHHHHHHHhhCCH
Q 025905          202 IDEGVQVYRRFYTE  215 (246)
Q Consensus       202 iEEgv~~yr~iYsk  215 (246)
                      +++-.+.++++|+.
T Consensus        77 L~elk~~i~~iYp~   90 (102)
T PRK04980         77 LPELKQVIAEIYPN   90 (102)
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999999996

>COG2411 Uncharacterized conserved protein [Function unknown]

Probab=91.33  E-value=1.7  Score=38.95  Aligned_cols=92  Identities=22%  Similarity=0.267  Sum_probs=64.5

Q ss_pred             eeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc--ce--EEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025905          129 LHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN--KC--LVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE  204 (246)
Q Consensus       129 M~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~--e~--l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE  204 (246)
                      +.+..+|-+.|-+|+|+.-||+.   --..++|+.+...  ..  -.++|++|+ |.--+++=+.   +..+-|-.|.||
T Consensus         9 l~f~gkY~~~ii~GkKr~TIR~G---~~~~k~g~eVyIh~~g~i~gkAkIk~V~-~KrV~ELTdE---DAr~DGF~sreE   81 (188)
T COG2411           9 LEFDGKYKDKIIDGKKRTTIRLG---KIVLKPGSEVYIHSGGYIIGKAKIKKVK-TKRVSELTDE---DARLDGFRSREE   81 (188)
T ss_pred             eeechHHHHHHhcCceeEEEecC---cccCCCCCEEEEEECCEEEEEEEEEEEE-EeeHhhhhHH---HHHhcccccHHH
Confidence            67889999999999999999998   3456899998885  22  344555554 3444554443   334556679999


Q ss_pred             HHHHHHhhCCH--hHHhhccEEEEEEec
Q 025905          205 GVQVYRRFYTE--EKEKTNGVIAICVTK  230 (246)
Q Consensus       205 gv~~yr~iYsk--EkE~~yGVvAI~I~~  230 (246)
                      .+..+.++|+.  ....   |--|+++.
T Consensus        82 Li~~LkriYg~lr~ed~---VTIi~Fe~  106 (188)
T COG2411          82 LIEELKRIYGELRDEDI---VTIIEFEV  106 (188)
T ss_pred             HHHHHHHHcCcCCCCce---EEEEEEEE
Confidence            99999999973  2222   55666665

>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.28  E-value=1.8  Score=35.42  Aligned_cols=91  Identities=15%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             eccchhhHHHhcCCceEEEEccCccccCCCCCCEEEE---c-c--eEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHH
Q 025905          130 HVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILC---N-K--CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTID  203 (246)
Q Consensus       130 ~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F---~-e--~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiE  203 (246)
                      ....++=..|.+|.|||-||  |.--+..++||.+.-   . +  -...+|++|..- +|.+|=+.. .+.-  .. ++.
T Consensus         7 TFf~rfe~dilagrKTITIR--D~SEShf~~g~vlrV~r~Ed~~~fc~I~vl~vspv-tld~l~e~H-AeQE--nm-~L~   79 (106)
T COG3097           7 TFFQRFEADILAGRKTITIR--DKSESHFKPGDVLRVGRFEDDRYFCTIEVLAVSPV-TLDELTEKH-AEQE--NM-TLP   79 (106)
T ss_pred             eehhhccHHHhCCCceEEEe--ccchhcCCCCCEEEEEEecCCcEEEEEEEEEeccE-ehhhhhhhh-hhhh--cC-CcH
Confidence            34556667899999999999  555688999999974   2 2  234455555432 344443321 0000  12 778


Q ss_pred             HHHHHHHhhCCHhHHhhccEEEEEEe
Q 025905          204 EGVQVYRRFYTEEKEKTNGVIAICVT  229 (246)
Q Consensus       204 Egv~~yr~iYskEkE~~yGVvAI~I~  229 (246)
                      |.-+.+..||+.+.+  +=|+...+.
T Consensus        80 eLk~vI~eIYP~~d~--fyVI~f~L~  103 (106)
T COG3097          80 ELKKVIAEIYPNQDQ--FYVIEFQLA  103 (106)
T ss_pred             HHHHHHHHHCCCCcE--EEEEEEEec
Confidence            888999999996654  446666554

>cd06553 ASCH_Ef3133_like ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133

Probab=84.58  E-value=6.2  Score=32.88  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=55.4

Q ss_pred             ccchhhHHHhcCCceEEEEcc----CccccCCCCCCEEEEc-------ceEEEEEEEEeecCCHHHHH-hhcCccccCCC
Q 025905          131 VQEPYFTQLKDGLKTVEGRCA----VGDYNRIGSGSLILCN-------KCLVLKVQDVHGYLSFSEML-QAESLAKVLPG  198 (246)
Q Consensus       131 L~e~yF~lIksGkKTIE~RLn----DeKrq~IkvGD~I~F~-------e~l~v~V~~Vr~Y~SF~eLL-e~E~l~kvlPg  198 (246)
                      +.++.-++|.+|+||.-.|+.    ++.-.--++||.=+..       -.+.+.-+++.+|..-.+-. .+||     .|
T Consensus        12 ~ad~l~~LVl~G~KtAT~s~~~~y~~e~e~~p~vG~~~Ivld~~g~p~cvi~~~~V~~~~f~~vt~~~A~~EG-----eg   86 (127)
T cd06553          12 LADELAALVLAGKKTATCSALALYEAEEEPLPKVGDYSIILDGQGKPVCIIETTEVEVVPFNDVTEEFAYAEG-----EG   86 (127)
T ss_pred             HHHHHHHHHHcCCcEEEEechhhcccCCccCCCCCcEEEEECCCCCEEEEEEEEEEEEEEcccCCHHHHHHhC-----CC
Confidence            346778999999999999974    3444467899965543       23555555666666654322 2222     23


Q ss_pred             CCCHHHHHHHHHhhCCHhHHh
Q 025905          199 IKTIDEGVQVYRRFYTEEKEK  219 (246)
Q Consensus       199 ~~SiEEgv~~yr~iYskEkE~  219 (246)
                      -.|++.=-+..+.||+++-..
T Consensus        87 d~sl~~Wr~~h~~ff~~~~~~  107 (127)
T cd06553          87 DRSLEYWRKAHEAFFTRELEE  107 (127)
T ss_pred             ccCHHHHHHHHHHHHHHHHhh
Confidence            347898888999999876543

The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.

>PRK11507 ribosome-associated protein; Provisional

Probab=82.79  E-value=2.3  Score=32.59  Aligned_cols=55  Identities=13%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             cCchhhhhhhhhhhhhhhhhHHHHhhcccceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcce
Q 025905           97 EDDDLKKREDWGKLVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKC  169 (246)
Q Consensus        97 e~~~~~~~~~w~~l~~~~g~el~~~~~~~~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e~  169 (246)
                      |-..|.|-=.|.-++.. |-+..                 .+|++|.=.|-+-+...++++|.+||.|.|++.
T Consensus        10 e~I~L~QlLK~~~~v~S-GG~AK-----------------~~I~eg~V~VNGeve~rRgkKl~~GD~V~~~g~   64 (70)
T PRK11507         10 PHVELCDLLKLEGWSES-GAQAK-----------------IAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH   64 (70)
T ss_pred             CeEEHHHHHhhhCcccC-hHHHH-----------------HHHHcCceEECCEEecccCCCCCCCCEEEECCE
Confidence            44566666667777766 77776                 368899888888888899999999999999853

>COG1935 Uncharacterized conserved protein [Function unknown]

Probab=82.25  E-value=2.9  Score=35.18  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=35.0

Q ss_pred             HHHhcCCceEEEEc--cCccccCCCCCCEEEEc-----------ceEEEEEEEEee
Q 025905          137 TQLKDGLKTVEGRC--AVGDYNRIGSGSLILCN-----------KCLVLKVQDVHG  179 (246)
Q Consensus       137 ~lIksGkKTIE~RL--nDeKrq~IkvGD~I~F~-----------e~l~v~V~~Vr~  179 (246)
                      ++++++.+|||||=  |..---++++||.+-.+           .-+.++|..+..
T Consensus        16 ~l~~~~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~~Dl~~GtsGiiAkV~~vev   71 (122)
T COG1935          16 SLLRNPIRTIEIRSARNLLTVLRLHEGDLVFLTSTSLEDLTKGTSGIIAKVRRVEV   71 (122)
T ss_pred             HHHhCCceEEEEEcccchHHhhcCCCCCEEEEehhHhhHhhcCcceeEEEEEEEEE
Confidence            57899999999994  55777889999998875           358888887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
2z0t_A	109	Crystal Structure Of Hypothetical Protein Ph0355 Le		6e-18
1s04_A	110	Solution Nmr Structure Of Protein Pf0455 From Pyroc		6e-17

>pdb|2Z0T|A Chain A, Crystal Structure Of Hypothetical Protein Ph0355 Length = 109

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 125 VNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKC-LVLKVQDVHGYLSF 183
           + +E+ +QE Y   +K G K +EGR       +I  G +I+     L +KV+ +  Y SF
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSF 60
Query: 184 SEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICV 228
            EML+ E +  VLPG+K+I+EGV+VYR+FY EE+EK  GV+AI +
Sbjct: 61  KEMLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYGVVAIEI 105

>pdb|1S04|A Chain A, Solution Nmr Structure Of Protein Pf0455 From Pyrococcus Furiosus. Northeast Structural Genomics Consortium Target Pfr13 Length = 110

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 125 VNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLI-LCNKCLVLKVQDVHGYLSF 183
           + +E+ +QE +   +K   K +EGR       +I  G +I      L ++V+ +  Y SF
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60
Query: 184 SEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAICV 228
            EML+ E L  VLPG+K+I+EG+QVYRRFY EEKEK  GV+AI +
Sbjct: 61  REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYGVVAIEI 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	2e-37
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	3e-36

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6 Length = 113

 Score =  126 bits (319), Expect = 2e-37
 Identities = 27/100 (27%), Positives = 52/100 (52%)

Query: 127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEM 186
           + L++++ Y   +K G K +E R A      I  G  I+ N  +  +V +V  Y +F ++
Sbjct: 4   YRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQV 63

Query: 187 LQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAI 226
           L+ E + K+ P   + ++ ++ +   Y + KE   GV+AI
Sbjct: 64  LREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAI 103

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A Length = 109

 Score =  123 bits (310), Expect = 3e-36
 Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)

Query: 125 VNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILC-NKCLVLKVQDVHGYLSF 183
           + +E+ +QE Y   +K G K +EGR       +I  G +I+     L +KV+ +  Y SF
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSF 60

Query: 184 SEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAI 226
            EML+ E +  VLPG+K+I+EGV+VYR+FY EE+EK  GV+AI
Sbjct: 61  KEMLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYGVVAI 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
2z0t_A	109	Putative uncharacterized protein PH0355; alpha/bet	100.0
1xne_A	113	Hypothetical protein PF0469; GFT structural genomi	100.0
3iuw_A	83	Activating signal cointegrator; NP_814290.1, struc	99.34
1te7_A	103	Hypothetical UPF0267 protein YQFB; alpha + beta, s	98.26
2kku_A	161	Uncharacterized protein; alpha/beta protein, struc	95.87
2dp9_A	124	Hypothetical protein TTHA0113; jellyroll, structur	90.05

>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A

Probab=100.00  E-value=7.9e-42  Score=273.24  Aligned_cols=106  Identities=42%  Similarity=0.719  Sum_probs=103.4

Q ss_pred             ceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcc-eEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025905          126 NFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNK-CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE  204 (246)
Q Consensus       126 ~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e-~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE  204 (246)
                      .|+|+|+++||++|++|+||||||+||+||++|++||+|+||. ++.|+|++|++|+||++||+++|+++|+|+++|+||
T Consensus         2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~~s~ee   81 (109)
T 2z0t_A            2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGVKSIEE   81 (109)
T ss_dssp             EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTCCCHHH
T ss_pred             eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCCCCHHH
Confidence            5999999999999999999999999999999999999999995 899999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhccEEEEEEecC
Q 025905          205 GVQVYRRFYTEEKEKTNGVIAICVTKP  231 (246)
Q Consensus       205 gv~~yr~iYskEkE~~yGVvAI~I~~~  231 (246)
                      |+++||+|||+|||++||||||+|++.
T Consensus        82 ~v~~~~~~Y~~e~E~~~GVlaI~i~~~  108 (109)
T 2z0t_A           82 GVKVYRQFYDEEREKKYGVVAIEIEPI  108 (109)
T ss_dssp             HHHHHHTTCCHHHHHHHCEEEEEEEEC
T ss_pred             HHHHHHHhCCHHHHHhcCEEEEEEEEc
Confidence            999999999999999999999999863

>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6

Probab=100.00  E-value=1.2e-41  Score=273.46  Aligned_cols=108  Identities=25%  Similarity=0.443  Sum_probs=105.3

Q ss_pred             cceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcceEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025905          125 VNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE  204 (246)
Q Consensus       125 ~~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE  204 (246)
                      ..|+|+|+++||++|++|+||||||+||+||++|++||+|+|++++.++|++|++|+||++||++|++++|+|+++|+||
T Consensus         2 ~~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~~s~ee   81 (113)
T 1xne_A            2 KVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEK   81 (113)
T ss_dssp             CEEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHH
T ss_pred             ceEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCCCCHHH
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhccEEEEEEecCC
Q 025905          205 GVQVYRRFYTEEKEKTNGVIAICVTKPA  232 (246)
Q Consensus       205 gv~~yr~iYskEkE~~yGVvAI~I~~~~  232 (246)
                      |+++||+||++|||++||||||+|++..
T Consensus        82 ~~~~~~~~Y~~e~E~~~GVvaI~i~~~~  109 (113)
T 1xne_A           82 ALKRFHNMYPKWKEYRYGVLAIKFRVLG  109 (113)
T ss_dssp             HHHHHTTSSSSSCCCCCCCEEEEEEESS
T ss_pred             HHHHHHHhCCHHHHHhcCEEEEEEEEcc
Confidence            9999999999999999999999999854

>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}

Probab=99.34  E-value=1.9e-12  Score=99.50  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             cccceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc---------ceEEEEEEEEeec
Q 025905          123 KTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN---------KCLVLKVQDVHGY  180 (246)
Q Consensus       123 ~~~~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---------e~l~v~V~~Vr~Y  180 (246)
                      .+..|+|.|+++||++|++|+||+|+|+||.+   +++||.|+|.         +.+.++|+.|.-|
T Consensus         6 ~~~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~---~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~   69 (83)
T 3iuw_A            6 HPTIHTLKIETEFFKAVKERRKTFEIRKNDRN---FQVGDILILEEYMNGMYLDDECEAEVIYITDY   69 (83)
T ss_dssp             CCCEEEEEEEHHHHHHHHTTSCCEEEEECCSC---CCTTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred             cceEEEEEcCHHHHHHHHcCCcEEEEEecccC---CCCCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence            45679999999999999999999999999954   9999999984         5788999999544

>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7

Probab=98.26  E-value=1.4e-06  Score=67.55  Aligned_cols=92  Identities=12%  Similarity=0.178  Sum_probs=68.4

Q ss_pred             eeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEE--c--c--eEEEEEEEEeecCCHHHHHhhcCccccCCCCCC
Q 025905          128 ELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILC--N--K--CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKT  201 (246)
Q Consensus       128 eM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F--~--e--~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~S  201 (246)
                      .|.+++++.++|.+|+||+.+|.  .+....++||.+..  +  +  -..++|++|+ +..|.++=++   .+...|. |
T Consensus         5 ~i~f~~~~~~~Il~G~KT~T~R~--~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee---~A~~EG~-s   77 (103)
T 1te7_A            5 DITFFQRFQDDILAGRKTITIRD--ESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK---HAEQENM-T   77 (103)
T ss_dssp             SCCCCHHHHHHHHTCCCEEEEEC--GGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH---HHHHTTS-C
T ss_pred             EEEEcHHHHHHHHCCCCEEEEeC--CCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH---HHHHcCC-C
Confidence            47788999999999999999997  34556899999977  3  2  2456777775 5566665432   1223454 9


Q ss_pred             HHHHHHHHHhhCCHhHHhhccEEEEEEec
Q 025905          202 IDEGVQVYRRFYTEEKEKTNGVIAICVTK  230 (246)
Q Consensus       202 iEEgv~~yr~iYskEkE~~yGVvAI~I~~  230 (246)
                      +++-.+.+++||+.+.+    |..|++++
T Consensus        78 l~~~~~~~~~iYp~~~~----v~vI~F~~  102 (103)
T 1te7_A           78 LTELKKVIADIYPGQTQ----FYVIEFKC  102 (103)
T ss_dssp             HHHHHHHHHHHCSCCSC----EEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCC----EEEEEEEE
Confidence            99999999999985533    88888875

>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}

Probab=95.87  E-value=0.056  Score=45.97  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=65.5

Q ss_pred             eeccchhhHHHh-cCCceEEEEccCccccCCCCCCEEEEc-----ce--EEEEEEEEeecCCHHHHHhhcCccccCCCCC
Q 025905          129 LHVQEPYFTQLK-DGLKTVEGRCAVGDYNRIGSGSLILCN-----KC--LVLKVQDVHGYLSFSEMLQAESLAKVLPGIK  200 (246)
Q Consensus       129 M~L~e~yF~lIk-sGkKTIE~RLnDeKrq~IkvGD~I~F~-----e~--l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~  200 (246)
                      |-+.++|-+.|- +|+|++ +|=.+ -+.++++||.|+|.     +.  =.++|.+|-.|++-.+|.+..+-. +  +. 
T Consensus        31 lSIkpey~~rIf~~GkK~f-lrr~~-v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~-~--gI-  104 (161)
T 2kku_A           31 YPIPKRFMDRFFKKGKDVF-VKPAT-VWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDR-V--FL-  104 (161)
T ss_dssp             ECCSSSTTHHHHHHSCEEE-EESSC-SCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEEESCTHHHHHHTSTT-B--SS-
T ss_pred             EecCHHHHHHHHhcCceEE-EeccC-cccccCCCCEEEEEEcCCCcEEEEEEEEEEEEecCCHHHHHHHhCcc-c--Cc-
Confidence            668899999999 999999 76322 45689999999997     22  356899999999999999987633 2  33 


Q ss_pred             CHHHHHHHHHhhCCHhHHhhcc----------EEEEEEec
Q 025905          201 TIDEGVQVYRRFYTEEKEKTNG----------VIAICVTK  230 (246)
Q Consensus       201 SiEEgv~~yr~iYskEkE~~yG----------VvAI~I~~  230 (246)
                      |-+|    +++||. .++. ||          .+||+|+.
T Consensus       105 Tkee----f~~Yy~-g~~~-w~~~~~~~~~~~~~aI~L~~  138 (161)
T 2kku_A          105 TKDE----LKEYMK-SQER-WGRRRESKKKKLWMAIELED  138 (161)
T ss_dssp             CHHH----HHHHHH-HHHH-TSSCCCCSSCCCEEEEEEEE
T ss_pred             CHHH----HHHHhc-cccc-ccccccccccccEEEEEecc
Confidence            4444    444444 3333 33          68888876

>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A

Probab=90.05  E-value=0.6  Score=36.99  Aligned_cols=57  Identities=30%  Similarity=0.300  Sum_probs=40.5

Q ss_pred             eeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc--ceE--EEEEEEEeecCCHHHHHhh
Q 025905          128 ELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN--KCL--VLKVQDVHGYLSFSEMLQA  189 (246)
Q Consensus       128 eM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~--e~l--~v~V~~Vr~Y~SF~eLLe~  189 (246)
                      -|-+.++|-++|-+|.||+|+|--..++    .|. |...  ..+  .|+|+++..+.|-+++.+.
T Consensus        10 ~LSIkqpyA~lIl~G~K~~E~R~~~t~~----rg~-v~IhatG~ivG~~~i~d~~g~~~~eel~~~   70 (124)
T 2dp9_A           10 GLIVREPYASLIVDGRKVWEIRRRKTRH----RGP-LGIVSGGRLIGQADLVGVEGPFSVEELLAH   70 (124)
T ss_dssp             EEECCTTHHHHHHTTCCCEEEESSCCCC----CEE-EEEEETTEEEEEEEEEEEEEEECHHHHGGG
T ss_pred             EEEEecHHHHHHHCCCceEEeeCCCCCC----CCE-EEEEECCCEEEEEEEEEEecCCCHHHHHHH
Confidence            4678999999999999999999875443    355 4443  443  4577787766666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1xnea_	113	b.122.1.6 (A:) Hypothetical protein PF0470 {Pyroco	5e-39
d1s04a_	110	b.122.1.6 (A:) Hypothetical protein PF0455 {Pyroco	2e-37

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]} Length = 113

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  129 bits (326), Expect = 5e-39
 Identities = 27/100 (27%), Positives = 52/100 (52%)

Query: 127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEM 186
           + L++++ Y   +K G K +E R A      I  G  I+ N  +  +V +V  Y +F ++
Sbjct: 4   YRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQV 63

Query: 187 LQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAI 226
           L+ E + K+ P   + ++ ++ +   Y + KE   GV+AI
Sbjct: 64  LREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAI 103

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]} Length = 110

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  125 bits (315), Expect = 2e-37
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 125 VNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILC-NKCLVLKVQDVHGYLSF 183
           + +E+ +QE +   +K   K +EGR       +I  G +I      L ++V+ +  Y SF
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60

Query: 184 SEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEEKEKTNGVIAI 226
            EML+ E L  VLPG+K+I+EG+QVYRRFY EEKEK  GV+AI
Sbjct: 61  REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYGVVAI 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1xnea_	113	Hypothetical protein PF0470 {Pyrococcus furiosus [	100.0
d1s04a_	110	Hypothetical protein PF0455 {Pyrococcus furiosus [	100.0
d1te7a_	103	Hypothetical protein YqfB {Escherichia coli [TaxId	92.3
d2dp9a1	120	Hypothetical protein TTHA0113 {Thermus thermophilu	80.96

>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0470
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.7e-43  Score=282.89  Aligned_cols=107  Identities=25%  Similarity=0.452  Sum_probs=105.0

Q ss_pred             ceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcceEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHHH
Q 025905          126 NFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDEG  205 (246)
Q Consensus       126 ~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEEg  205 (246)
                      .|+|+|+++||++|++|+|||||||||+||++|++||+|+|++++.|+|++|++|+||++||++|++++|+||++|+|+|
T Consensus         3 ~~~m~l~~~~f~~Ik~G~K~iE~Rl~d~kr~~ik~GD~I~F~~~~~~kV~~v~~Y~sF~ell~~e~l~~vlp~~~s~eeg   82 (113)
T d1xnea_           3 VYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKA   82 (113)
T ss_dssp             EEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHHH
T ss_pred             eEEEecCchhHHHHHcCCCEEEEEccchhHhhCCCCCEEEEEeeEEEEEEEEEEcCCHHHHHHHcCHHhhCCCCCCHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCHhHHhhccEEEEEEecCC
Q 025905          206 VQVYRRFYTEEKEKTNGVIAICVTKPA  232 (246)
Q Consensus       206 v~~yr~iYskEkE~~yGVvAI~I~~~~  232 (246)
                      +++||+|||+|||++||||||+|++.+
T Consensus        83 l~~~~~~Ys~E~E~k~GVvAI~i~lI~  109 (113)
T d1xnea_          83 LKRFHNMYPKWKEYRYGVLAIKFRVLG  109 (113)
T ss_dssp             HHHHTTSSSSSCCCCCCCEEEEEEESS
T ss_pred             HHHHHHHCCHHHHHhcCEEEEEEEEcC
Confidence            999999999999999999999999854

>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ProFAR isomerase associated domain
domain: Hypothetical protein PF0455
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=6.4e-43  Score=278.30  Aligned_cols=106  Identities=42%  Similarity=0.672  Sum_probs=103.6

Q ss_pred             ceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc-ceEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025905          126 NFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN-KCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE  204 (246)
Q Consensus       126 ~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~-e~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE  204 (246)
                      +|+|+|+++||++|++|+|||||||||+||++|++||+|.|+ +++.|+|++|++|+||++||++||+++|+||++|+++
T Consensus         2 ~~~m~L~~~~F~~Ik~G~K~IE~Rl~d~kr~~ik~GD~I~F~~~~l~vkV~~v~~y~sF~ell~~e~l~~~~p~~~s~ee   81 (110)
T d1s04a_           2 EWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSFREMLEKEGLENVLPGVKSIEE   81 (110)
T ss_dssp             CEEECCCHHHHHHHHHTTSSCCCCCCCHHHHHCCSSSCEEETTTTEEEEEEECCCBSCHHHHHHHTTSTTTSTTCSCHHH
T ss_pred             eEEEecCcchHHHHHcCCCEEEEEechhhHhhCCCCCEEEEeCCeEEEEEEEEEEcCCHHHHHHhcCccccCCCCCCHHH
Confidence            699999999999999999999999999999999999999995 7899999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHhHHhhccEEEEEEecC
Q 025905          205 GVQVYRRFYTEEKEKTNGVIAICVTKP  231 (246)
Q Consensus       205 gv~~yr~iYskEkE~~yGVvAI~I~~~  231 (246)
                      |+++||+|||+|||++||||||+|++.
T Consensus        82 ~l~~~~~~Ys~E~E~~yGVvAI~i~~I  108 (110)
T d1s04a_          82 GIQVYRRFYDEEKEKKYGVVAIEIEPL  108 (110)
T ss_dssp             HHHHHHHHSCHHHHHHTCBCCCEEECT
T ss_pred             HHHHHHHHCCHHHHHhcCEEEEEEEEe
Confidence            999999999999999999999999874

>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: yqfB-like
domain: Hypothetical protein YqfB
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.33  Score=36.75  Aligned_cols=80  Identities=15%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             eeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEE-c---c--eEEEEEEEEe--ecCCHHHH-HhhcCccccCCCC
Q 025905          129 LHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILC-N---K--CLVLKVQDVH--GYLSFSEM-LQAESLAKVLPGI  199 (246)
Q Consensus       129 M~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F-~---e--~l~v~V~~Vr--~Y~SF~eL-Le~E~l~kvlPg~  199 (246)
                      |.-.+++=..|.+|+|||-||  |+--...++|+.+.- +   +  -...+|.+|.  .|+...+. -++|       +.
T Consensus         6 ITFFeRfe~dIlsGkKTITIR--D~SEshy~pG~~v~V~t~E~~~~fc~I~IlsV~pi~fd~Lne~HA~QE-------nM   76 (103)
T d1te7a_           6 ITFFQRFQDDILAGRKTITIR--DESESHFKTGDVLRVGRFEDDGYFCTIEVTATSTVTLDTLTEKHAEQE-------NM   76 (103)
T ss_dssp             CCCCHHHHHHHHTCCCEEEEE--CGGGCCCCTTSEEEEEETTTEEEEEEEEEEEEEEECSTTTSTHHHHHT-------TS
T ss_pred             eehhHhhhHHHhcCCceEEec--cchhcccCCCCEEEEEEccCCCEEEEEEEEEEeeecHHHhhHHHHhhc-------CC
Confidence            455677788999999999999  666788999999974 3   1  2333444443  34333222 1222       22


Q ss_pred             CCHHHHHHHHHhhCCHhHH
Q 025905          200 KTIDEGVQVYRRFYTEEKE  218 (246)
Q Consensus       200 ~SiEEgv~~yr~iYskEkE  218 (246)
                       ++++.-+.++.||+-+.+
T Consensus        77 -~L~eLK~vI~eIYP~~~~   94 (103)
T d1te7a_          77 -TLTELKKVIADIYPGQTQ   94 (103)
T ss_dssp             -CHHHHHHHHHHHCSCCSC
T ss_pred             -CHHHHHHHHHHHCCCCce
Confidence             788888999999996544

>d2dp9a1 b.122.1.5 (A:1-120) Hypothetical protein TTHA0113 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Hypothetical protein TTHA0113
domain: Hypothetical protein TTHA0113
species: Thermus thermophilus [TaxId: 274]

Probab=80.96  E-value=0.5  Score=35.56  Aligned_cols=58  Identities=31%  Similarity=0.360  Sum_probs=40.0

Q ss_pred             eeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc-ceE--EEEEEEEeecCCHHHHHh
Q 025905          127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN-KCL--VLKVQDVHGYLSFSEMLQ  188 (246)
Q Consensus       127 heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~-e~l--~v~V~~Vr~Y~SF~eLLe  188 (246)
                      .-+-+.++|-.+|..|.||||+|--.-+++    |...+-. .++  .++..++..|-+-.+...
T Consensus         6 ~~Lsi~QPwA~lI~~G~K~iE~R~w~t~~R----G~l~Iha~~k~~~~~~l~d~~~~~~~~~~~~   66 (120)
T d2dp9a1           6 LGLIVREPYASLIVDGRKVWEIRRRKTRHR----GPLGIVSGGRLIGQADLVGVEGPFSVEELLA   66 (120)
T ss_dssp             CEEECCTTHHHHHHTTCCCEEEESSCCCCC----EEEEEEETTEEEEEEEEEEEEEEECHHHHGG
T ss_pred             ceeEEeCcHHHHHHcCCCeeeeccCCCCCC----ccEEEEEcccCCCchhHHHHhcccchhhhhh
Confidence            447788999999999999999999877664    5544433 232  346666666666555443