Citrus Sinensis ID: 025916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHcccccccEEcccccccHHHHHHHHcccccccccEEEEEcccccccccccccEEEEcHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHcccccEEEcccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccHHHccccccccccccccccccEEEEEEEccccccEEEEHcHcHEEEEEcccHHHHHHHHHHHHHHcHcccccEEEEEEEccccccccccEcHHHHHHHHHHHHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEHHHHHHHccccEEcccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
mevatasapifglrtrmlatpprtsprtvncnrnlstsfispfangsvssdfsglrlrpdclnpdsfckskprspvitmyedveKPIYLYINstgttkggeklgyeTEAFAIYDvmgyvkppiftLCVGNAWGEAALLLGAgakgnraalpsstimikqpigriegqATDVEIARKEMKNVKAELVKLYAKHfgktpeqieadirrpkyfspseaveygiidkvlytekspedhgvvsdlkkaqli
Flexible Loop (DISEMBL)
mevatasapifglrtrmlatpprtsprtvncNRNLSTSFISPFANGSVSSDFSGLRLRPDCLnpdsfckskprspvitmyedvekPIYLYINStgttkggeklGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSstimikqpigrieGQATDVEIARKEMKNVKAELVKLYAkhfgktpeqieadirrpkyfspsEAVEYGIIDKVLYtekspedhgvvsdlkkaqli
Low Complexity Region (SEG)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNawgeaalllgagakgnraalPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI
Disordered region (IsUnstruct)
*************************************SFISPF**********GLRLRPDCLNPDSFC*****SPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT*******************
Disordered Region (DISOPRED)
**********************************LSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV**********************
Disordered Region (DISEMBL)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI
Disordered Region (DISPRO)
MEVATASAPIFGLRTRMLAT***TSPRT**CNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q8LB10	305	ATP-dependent Clp proteas	yes	no	0.845	0.681	0.630	7e-88
Q9L4P4	228	Putative ATP-dependent Cl	yes	no	0.609	0.657	0.476	1e-37
P74466	225	Putative ATP-dependent Cl	N/A	no	0.593	0.648	0.462	7e-35
Q7NEW1	218	ATP-dependent Clp proteas	yes	no	0.565	0.637	0.510	6e-33
Q60107	207	ATP-dependent Clp proteas	yes	no	0.556	0.661	0.482	7e-33
A1JNN2	207	ATP-dependent Clp proteas	yes	no	0.556	0.661	0.482	7e-33
Q6D827	207	ATP-dependent Clp proteas	yes	no	0.556	0.661	0.496	9e-33
C4XH03	202	ATP-dependent Clp proteas	yes	no	0.585	0.712	0.486	2e-32
A7HZE8	195	ATP-dependent Clp proteas	yes	no	0.569	0.717	0.5	2e-32
O67357	201	ATP-dependent Clp proteas	yes	no	0.556	0.681	0.489	4e-32

>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1

 Score =  323 bits (828), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 162/257 (63%), Positives = 185/257 (71%), Gaps = 49/257 (19%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITM------------------- 79
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TM                   
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 80  ------------------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEA 109
                                         YED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 169
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 170 DVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           DVEIARKE+K++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EAVEYGIIDKV+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288

Query: 230 SPEDHGVVSDLKKAQLI 246
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 110/151 (72%), Gaps = 1/151 (0%)

Query: 80  YEDVEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 138
           +++ EKPIY YINSTGT+   G+ +GYETEAFAI D M Y+KPP+ T+C+G A G AA++
Sbjct: 68  FDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMI 127

Query: 139 LGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           L  G  GNRA+LP +TI++ QP    +GQA+D++I  KE+   K  +++++A++ G+ P+
Sbjct: 128 LSGGTPGNRASLPHATIVLNQPRTGAQGQASDIQIRAKEVLANKRTMLEIFARNTGQDPD 187

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           ++  D  R  Y +P++AVEYG+ID+VL + K
Sbjct: 188 RLARDTDRMLYMTPAQAVEYGLIDRVLDSRK 218

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR PE=3 SV=1

 Score =  147 bits (371), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 107/147 (72%), Gaps = 1/147 (0%)

Query: 80  YEDVEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 138
           ++D +KPIY YINSTGT+   G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G AA++
Sbjct: 66  FDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMI 125

Query: 139 LGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           L +G KG RA+LP +TI++ Q     +GQATD++I  KE+ + K  ++++ + + G+T E
Sbjct: 126 LSSGTKGYRASLPHATIVLNQNRTGAQGQATDIQIRAKEVISNKQTMLEILSLNTGQTQE 185

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKVL 225
           ++  D+ R  Y +P++A EYG+ID+VL
Sbjct: 186 KLAKDMDRTFYLTPAQAKEYGLIDRVL 212

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus (strain PCC 7421) GN=clpP2 PE=3 SV=1

 Score =  140 bits (354), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 94/145 (64%), Gaps = 6/145 (4%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED  KPI +YINS G        G+ET AFA+YD M +V+ PI T+C+G A G +ALL+ 
Sbjct: 63  EDNAKPIEIYINSPGVA------GFETSAFAVYDTMRHVRMPIKTICLGLAGGFSALLMA 116

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AG KG R +LP+S I++ QP G   GQATD+ I  +E+   K  L +L + H GKT EQI
Sbjct: 117 AGTKGQRMSLPNSRIILYQPYGGARGQATDINIRAQELLTTKRTLNQLLSIHTGKTVEQI 176

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           + D  R  Y SP EAV YG+IDKVL
Sbjct: 177 DKDTERLFYMSPQEAVSYGLIDKVL 201

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q60107|CLPP_YEREN ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica GN=clpP PE=3 SV=1

 Score =  140 bits (354), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 93/145 (64%), Gaps = 8/145 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           E+ EK I+LYINS G        G  T   +IYD M ++KP + T+C+G A    A LL 
Sbjct: 67  ENPEKDIFLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R  LP+S +MI QP+G  +GQATD+EI  KE+  VK+ + +L AKH GK+ E+I
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEI 178

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S  EAVEYG++D V 
Sbjct: 179 ERDTERDRFLSADEAVEYGLVDSVF 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Yersinia enterocolitica (taxid: 630)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A1JNN2|CLPP_YERE8 ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=clpP PE=3 SV=1

 Score =  140 bits (354), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 93/145 (64%), Gaps = 8/145 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           E+ EK I+LYINS G        G  T   +IYD M ++KP + T+C+G A    A LL 
Sbjct: 67  ENPEKDIFLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R  LP+S +MI QP+G  +GQATD+EI  KE+  VK+ + +L AKH GK+ E+I
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEI 178

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S  EAVEYG++D V 
Sbjct: 179 ERDTERDRFLSADEAVEYGLVDSVF 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q6D827|CLPP_ERWCT ATP-dependent Clp protease proteolytic subunit OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=clpP PE=3 SV=1

 Score =  140 bits (353), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 93/145 (64%), Gaps = 8/145 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A    A LL 
Sbjct: 67  ENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLT 118

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R  LP+S +MI QP+G  +GQATD+EI  KE+  VKA++ +L AKH G+  E I
Sbjct: 119 AGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAI 178

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S SEAVEYG++D V 
Sbjct: 179 ERDTERDRFLSASEAVEYGLVDSVF 203

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|C4XH03|CLPP_DESMR ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=clpP PE=3 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 93/152 (61%), Gaps = 8/152 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED EK I++YINS G        G  +   AIYD M YV PP+ TLC+G A    ALLL 
Sbjct: 54  EDPEKEIFMYINSPG--------GVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLC 105

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGA G R ALP S IMI QP G  +GQATD+EI  KE +  +  L ++ AKH G++ E+I
Sbjct: 106 AGATGMRYALPHSRIMIHQPSGGYQGQATDIEIHAKETRRTRETLNEIMAKHTGQSMERI 165

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 232
           + D  R  + S  EAV YG+IDKVL + +  E
Sbjct: 166 QVDTERDNFMSAEEAVAYGLIDKVLTSRERLE 197

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) (taxid: 573370)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A7HZE8|CLPP_CAMHC ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 95/150 (63%), Gaps = 10/150 (6%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED +K IYLYINS G        G  T  F+IYD M Y+KP + T+C+G A    A LL 
Sbjct: 53  EDPDKDIYLYINSPG--------GVVTSGFSIYDTMNYIKPAVSTICIGQAASMGAFLLS 104

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
            G KG R ALP++ IMI QP+G  +GQATD+EI  KE+  +KA L K+ A++ G+   +I
Sbjct: 105 CGEKGKRYALPNARIMIHQPLGGAQGQATDIEITTKEILRIKATLNKILAENSGQKLSKI 164

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230
           E D  R  Y S  EAV+YG+IDKVL  EKS
Sbjct: 165 EKDTDRDFYMSAQEAVKYGLIDKVL--EKS 192

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) (taxid: 360107)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|O67357|CLPP_AQUAE ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus (strain VF5) GN=clpP PE=3 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 93/145 (64%), Gaps = 8/145 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           +D +K IYLYINS G        G  T   AIYD M Y+KP + T+C+G A    A+LL 
Sbjct: 61  QDPDKDIYLYINSPG--------GSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLA 112

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGA G R ALP S IMI QP+G I+GQATD+ I  +E+K +K  L+ + AKH G+  ++I
Sbjct: 113 AGAPGKRYALPHSRIMIHQPLGGIQGQATDIIIHAEEIKRIKEMLIDILAKHTGQPKDKI 172

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
             DI R  + SP EA +YG+IDKV+
Sbjct: 173 ANDIERDYFMSPYEAKDYGLIDKVI 197

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224126447	310	predicted protein [Populus trichocarpa]	0.995	0.790	0.598	8e-94
297800408	305	hypothetical protein ARALYDRAFT_493172 [	0.845	0.681	0.634	2e-86
18414804	305	ATP-dependent Clp protease proteolytic s	0.845	0.681	0.630	4e-86
255580803	314	ATP-dependent Clp protease proteolytic s	0.995	0.780	0.565	1e-85
19698857	305	unknown protein [Arabidopsis thaliana] g	0.845	0.681	0.626	1e-85
260766931	305	ATP-dependent Clp protease [Eriobotrya j	0.987	0.796	0.622	3e-84
359495737	297	PREDICTED: ATP-dependent Clp protease pr	0.987	0.818	0.603	3e-80
449459004	304	PREDICTED: ATP-dependent Clp protease pr	0.987	0.799	0.596	3e-79
297745678	282	unnamed protein product [Vitis vinifera]	0.926	0.808	0.612	2e-77
356563393	304	PREDICTED: ATP-dependent Clp protease pr	0.987	0.799	0.596	7e-77

>gi|224126447|ref|XP_002329556.1| predicted protein [Populus trichocarpa] gi|118483146|gb|ABK93479.1| unknown [Populus trichocarpa] gi|222870265|gb|EEF07396.1| predicted protein [Populus trichocarpa]

 Score =  349 bits (895), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 186/311 (59%), Positives = 210/311 (67%), Gaps = 66/311 (21%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTS----------------FISPFA 44
           M VATA+A  FG   RMLA+P   S R +N NR L+ S                F+SPFA
Sbjct: 1   MAVATATASSFGFHKRMLASP-TVSSRIINPNRTLALSSSPSTSSSSRASLSTCFLSPFA 59

Query: 45  NGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITM------------------------- 79
            GS++ DFSG ++RP+CLNP S   SK +  V+TM                         
Sbjct: 60  GGSITCDFSGTKIRPECLNPASISSSKGKRSVVTMVIPYTRGSAWEQPPPDLASYLFKNR 119

Query: 80  ------------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV 115
                                   YED EKPIYLYINSTGTTKGGEKLGYETEAFAIYDV
Sbjct: 120 IVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV 179

Query: 116 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIAR 175
           MGYVKPPIFTLCVGNAWGEAALLL AG++GNR+ALPSSTIM+KQPIGR +GQATDVE+AR
Sbjct: 180 MGYVKPPIFTLCVGNAWGEAALLLAAGSRGNRSALPSSTIMMKQPIGRFQGQATDVELAR 239

Query: 176 KEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHG 235
           KE+KNVK ELV L AKH GK PE+IEADI RPKYFSP+EAVEYGIIDKV+Y E++ ED G
Sbjct: 240 KEIKNVKTELVNLLAKHIGKLPEEIEADISRPKYFSPTEAVEYGIIDKVIYNERTTEDRG 299

Query: 236 VVSDLKKAQLI 246
           VVSDLKKAQLI
Sbjct: 300 VVSDLKKAQLI 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800408|ref|XP_002868088.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata] gi|297313924|gb|EFH44347.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/257 (63%), Positives = 185/257 (71%), Gaps = 49/257 (19%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITM------------------- 79
           F+SP+  GS+SSDF G +LR + LNP +   SKP+  V+TM                   
Sbjct: 49  FLSPYTGGSISSDFCGAKLRAESLNPLNLSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 80  ------------------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEA 109
                                         YED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 169
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 170 DVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           DVEIARKE+K++K E+VKLY+KH GK+PEQIEAD++RPKYFSPSEAVEYGIIDKV+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPSEAVEYGIIDKVVYNER 288

Query: 230 SPEDHGVVSDLKKAQLI 246
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414804|ref|NP_567521.1| ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana] gi|75301253|sp|Q8LB10.1|CLPR4_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic; Short=ClpR4; Flags: Precursor gi|21593086|gb|AAM65035.1| ATP-dependent Clp protease proteolytic subunit ClpR4, putative [Arabidopsis thaliana] gi|26450085|dbj|BAC42162.1| putative ClpP protease complex subunit ClpR4 [Arabidopsis thaliana] gi|332658442|gb|AEE83842.1| ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 162/257 (63%), Positives = 185/257 (71%), Gaps = 49/257 (19%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITM------------------- 79
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TM                   
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 80  ------------------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEA 109
                                         YED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 169
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 170 DVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           DVEIARKE+K++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EAVEYGIIDKV+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288

Query: 230 SPEDHGVVSDLKKAQLI 246
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580803|ref|XP_002531222.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223529182|gb|EEF31158.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 178/315 (56%), Positives = 203/315 (64%), Gaps = 70/315 (22%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGS------------- 47
           MEVATA+A    L TRMLA+ P  S  T + NR L+ S  S  ++               
Sbjct: 1   MEVATATASTVALHTRMLASTPICS-HTSSSNRTLAFSSSSSSSSSPSLRSSSLSTSFFS 59

Query: 48  -------VSSDFSGLRLRPDCLNPDSFCKSKPRSPVITM--------------------- 79
                  V  DFSG+++RP+CLNP S    + +  V+TM                     
Sbjct: 60  SFSGSGSVIGDFSGMKVRPECLNPASISNFRGKRSVVTMVIPYTRGSAWEQPPPDLASYL 119

Query: 80  ----------------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEAFA 111
                                       YED EKPIYLYINSTGTTKGGEKLGYETEAFA
Sbjct: 120 FKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFA 179

Query: 112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDV 171
           I+DVMGYVKPPIFTLCVGNAWGEAALLL AG+KGNR+ALPSSTIMIKQPIGR +GQATDV
Sbjct: 180 IHDVMGYVKPPIFTLCVGNAWGEAALLLAAGSKGNRSALPSSTIMIKQPIGRFQGQATDV 239

Query: 172 EIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231
           E+ARKE+ NVKAELV L AK+ GK+P +IEADI RPKYF+P+EAVEYGIIDKVLY E+  
Sbjct: 240 ELARKEISNVKAELVNLLAKYIGKSPGEIEADISRPKYFTPAEAVEYGIIDKVLYNERGT 299

Query: 232 EDHGVVSDLKKAQLI 246
           ED GVVSDLKKAQLI
Sbjct: 300 EDRGVVSDLKKAQLI 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19698857|gb|AAL91164.1| unknown protein [Arabidopsis thaliana] gi|23197684|gb|AAN15369.1| unknown protein [Arabidopsis thaliana]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/257 (62%), Positives = 185/257 (71%), Gaps = 49/257 (19%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITM------------------- 79
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TM                   
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 80  ------------------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEA 109
                                         YED +KPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEKKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 169
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 170 DVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           DVEIARKE+K++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EAVEYGIIDKV+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288

Query: 230 SPEDHGVVSDLKKAQLI 246
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260766931|gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 191/307 (62%), Positives = 211/307 (68%), Gaps = 64/307 (20%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNR------------NLSTSFISPFANGSV 48
           MEVAT +A  F L TRMLATP  T PR  N  R            +LSTSF+ PFA  S+
Sbjct: 1   MEVAT-TASSFALHTRMLATP--TIPRARNTTRPHPTSSRSLPRASLSTSFLCPFAGNSL 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITM----------------------------- 79
           SS+FSG +LRP  LNP SF  S+P+  V+TM                             
Sbjct: 58  SSEFSGHKLRPSSLNPASFRGSEPKRGVVTMVILFQRGSAWEQPPPDLASYLYKNRIVYL 117

Query: 80  --------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 119
                               YED  KPIYLYINSTGTTKGGEKLGYETEAFAIYDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDDTKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 177

Query: 120 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMK 179
           KPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIM+KQPI R +GQATD+E+AR+E++
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMKQPIARFQGQATDIELARREVR 237

Query: 180 NVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSD 239
           NVK ELVKL+AKH GK+ EQIEADIRRPKYFSPSEAVEYGIIDKVLY E+S ED GVVSD
Sbjct: 238 NVKDELVKLFAKHVGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERSTEDRGVVSD 297

Query: 240 LKKAQLI 246
           LKKAQLI
Sbjct: 298 LKKAQLI 304

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495737|ref|XP_003635075.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Vitis vinifera]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 207/300 (69%), Gaps = 57/300 (19%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLST-----SFISPFANGSVSSDFSGL 55
           M VAT ++ +F   TRMLA P  T+  T + NR L++     + +SP+  GSV+SDFSG 
Sbjct: 1   MGVATMASNLF-THTRMLAPP--TNSGTTSSNRTLASFSLRANLLSPYVGGSVASDFSGQ 57

Query: 56  RLRPDCLNPDSFCKSKPRSPVITM------------------------------------ 79
           ++RP  L   SF  S  +   +TM                                    
Sbjct: 58  KIRPSSLYSASFSGSHAKRGGVTMVIPFTRGSALDQPPPDLPSYLFKNRIVYLGMSLVPS 117

Query: 80  -------------YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTL 126
                        Y+D EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK PIFTL
Sbjct: 118 VTELILAEFLYLQYDDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKSPIFTL 177

Query: 127 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 186
           CVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQATD+++ARKE+KNVKAELV
Sbjct: 178 CVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKAELV 237

Query: 187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI 246
           KLYAKH GK+PE+IEADIRRPKYFSPSEAVEYGIIDKVLY E+S ED GVV+DLKKAQLI
Sbjct: 238 KLYAKHIGKSPEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSSEDRGVVADLKKAQLI 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459004|ref|XP_004147236.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus] gi|449510487|ref|XP_004163680.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 183/307 (59%), Positives = 205/307 (66%), Gaps = 64/307 (20%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLS------------TSFISPFANGSV 48
           MEVAT +A  F L  R+  +P  TS      NR LS            T+F+ PFA GSV
Sbjct: 1   MEVAT-TASSFALTKRI--SPLITSSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSV 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITM----------------------------- 79
           S +FSG++LRP  LNP+    SK +  V+TM                             
Sbjct: 58  SGEFSGVKLRPSSLNPNYSPGSKGKRGVVTMVIPFARGSAWEQPPPDLASYLYKNRIVYL 117

Query: 80  --------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 119
                               YED  KPIYLY+NSTGTTKGGEKLGYETEAFA+YDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAVYDVMSYV 177

Query: 120 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMK 179
           KPPIFTLCVGNAWGEAALLL AGA GNR+ALPSSTIMIK+PI R +GQATDVEIARKE++
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAPGNRSALPSSTIMIKEPIARFQGQATDVEIARKEVR 237

Query: 180 NVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSD 239
           NVKAELVKLYAKH GK+ E+IEADIRRPKYFSPSEAVEYGIIDKVLY E++ ED GVVSD
Sbjct: 238 NVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSD 297

Query: 240 LKKAQLI 246
           LKKAQLI
Sbjct: 298 LKKAQLI 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745678|emb|CBI40932.3| unnamed protein product [Vitis vinifera]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/284 (61%), Positives = 197/284 (69%), Gaps = 56/284 (19%)

Query: 17  MLATPPRTSPRTVNCNRNLST-----SFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSK 71
           MLA P  T+  T + NR L++     + +SP+  GSV+SDFSG ++RP  L   SF  S 
Sbjct: 1   MLAPP--TNSGTTSSNRTLASFSLRANLLSPYVGGSVASDFSGQKIRPSSLYSASFSGSH 58

Query: 72  PRSPVITM-------------------------------------------------YED 82
            +   +TM                                                 Y+D
Sbjct: 59  AKRGGVTMVIPFTRGSALDQPPPDLPSYLFKNRIVYLGMSLVPSVTELILAEFLYLQYDD 118

Query: 83  VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 142
            EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK PIFTLCVGNAWGEAALLL AG
Sbjct: 119 AEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKSPIFTLCVGNAWGEAALLLAAG 178

Query: 143 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA 202
           AKGNR+ALPSSTIMIKQPI R +GQATD+++ARKE+KNVKAELVKLYAKH GK+PE+IEA
Sbjct: 179 AKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEA 238

Query: 203 DIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI 246
           DIRRPKYFSPSEAVEYGIIDKVLY E+S ED GVV+DLKKAQLI
Sbjct: 239 DIRRPKYFSPSEAVEYGIIDKVLYNERSSEDRGVVADLKKAQLI 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563393|ref|XP_003549948.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Glycine max]

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 183/307 (59%), Positives = 205/307 (66%), Gaps = 64/307 (20%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNR-----------NLSTSFISPFAN-GSV 48
           MEVATA++  F L   MLA P  +S RTV   R           +LSTSF++P+A   S 
Sbjct: 1   MEVATAASS-FALNKPMLALP--SSSRTVTPIRCMNTSTSPVRTSLSTSFVAPYAGICSA 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITM----------------------------- 79
           SS FSG +LRP  LNP SF  S  +  V+TM                             
Sbjct: 58  SSPFSGHKLRPSSLNPASFLGSNAKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYL 117

Query: 80  --------------------YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 119
                               YED +KPIYLYINSTGTTKGGEKLGYETEAFAIYDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 177

Query: 120 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMK 179
           KPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMI+QPI R +GQATDV +AR+E+ 
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVN 237

Query: 180 NVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSD 239
           NVK ELVKLYAKH  KTPEQIEADI+RPKYFSPSEAVEYGIIDKV+Y ++  ED GVVSD
Sbjct: 238 NVKTELVKLYAKHMEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVIYNDRGTEDRGVVSD 297

Query: 240 LKKAQLI 246
           LKKA+LI
Sbjct: 298 LKKARLI 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2130449	305	CLPR4 "CLP protease R subunit	0.678	0.547	0.736	1.1e-76
UNIPROTKB|E2QUV8	301	CLPP "ATP-dependent Clp protea	0.581	0.475	0.398	1e-25
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.556	0.661	0.4	5.3e-24
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.573	0.723	0.395	1.8e-23
UNIPROTKB|Q2KHU4	272	CLPP "Putative ATP-dependent C	0.898	0.812	0.329	4.8e-23
FB|FBgn0032229	253	CG5045 [Drosophila melanogaste	0.804	0.782	0.361	1e-22
UNIPROTKB|Q16740	277	CLPP "Putative ATP-dependent C	0.581	0.516	0.398	1e-22
MGI|MGI:1858213	272	Clpp "ClpP caseinolytic peptid	0.581	0.525	0.398	1e-22
RGD|1588583	272	Clpp "ClpP caseinolytic peptid	0.581	0.525	0.398	1e-22
ZFIN|ZDB-GENE-030131-7860	266	clpp "ClpP caseinolytic peptid	0.556	0.515	0.393	2.1e-22

TAIR|locus:2130449 CLPR4 "CLP protease R subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
 Identities = 123/167 (73%), Positives = 137/167 (82%)

Query:    80 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXX 139
             YED EKPIYLYINSTGTTK GEKLGY+TEAFAIYDVMGYVKPPIFTLCVGN         
Sbjct:   139 YEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 198

Query:   140 XXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 199
                        PSSTIMIKQPI R +GQATDVEIARKE+K++K E+VKLY+KH GK+PEQ
Sbjct:   199 TAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQ 258

Query:   200 IEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI 246
             IEAD++RPKYFSP+EAVEYGIIDKV+Y E+  +D GVVSDLKKAQLI
Sbjct:   259 IEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|E2QUV8 CLPP "ATP-dependent Clp protease proteolytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 61/153 (39%), Positives = 81/153 (52%)

Query:    81 EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
             E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG           
Sbjct:   133 ESNKKPIHMYINSPG--------GMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 184

Query:   141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                       P+S IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + I
Sbjct:   185 AGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAKHTKQSLQVI 244

Query:   201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 233
             E+ + R +Y SP EA E+GI+DKVL     P+D
Sbjct:   245 ESAMERDRYMSPMEAQEFGILDKVLV--HPPQD 275

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 58/145 (40%), Positives = 81/145 (55%)

Query:    81 EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
             E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G           
Sbjct:    67 ENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118

Query:   141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                       P+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQI
Sbjct:   119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 178

Query:   201 EADIRRPKYFSPSEAVEYGIIDKVL 225
             E D  R ++ S  EAVEYG++D +L
Sbjct:   179 ERDTERDRFLSAPEAVEYGLVDSIL 203

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 59/149 (39%), Positives = 81/149 (54%)

Query:    81 EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
             ED EK I+LYINS G        G  T   AIYD M Y+KP + T+C+G           
Sbjct:    55 EDPEKDIHLYINSPG--------GVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLA 106

Query:   141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                       P + IMI QP+G ++GQATD++I  +E+  ++  L +L  KH G+  E+I
Sbjct:   107 AGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKI 166

Query:   201 EADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
             E D  R  + S +EA EYGIID+V+   K
Sbjct:   167 ERDTERDFFMSAAEAKEYGIIDEVITVRK 195

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|Q2KHU4 CLPP "Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 81/246 (32%), Positives = 107/246 (43%)

Query:     3 VATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTS----------FISPFANGSVSSDF 52
             VA    P  G R      P RT    +   RNL  +           +     G  + D 
Sbjct:    12 VAAGLCPALGPRLAARFPPQRTPENRLAPQRNLHATAARALPLIPIVVEQTGRGERAYDI 71

Query:    53 SG--LRLRPDC-LNP--DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYET 107
                 LR R  C + P  DS         +    E  +KPI++YINS G        G  T
Sbjct:    72 YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GVVT 123

Query:   108 EAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQ 167
                AIYD M Y+  PI T CVG                     P+S IMI QP G   GQ
Sbjct:   124 SGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQ 183

Query:   168 ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT 227
             ATD+ I  +E+  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL  
Sbjct:   184 ATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV- 242

Query:   228 EKSPED 233
                P+D
Sbjct:   243 -HPPQD 247

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

FB|FBgn0032229 CG5045 [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 78/216 (36%), Positives = 100/216 (46%)

Query:    32 NRNLSTSFISPFANGSVSSD-FSGL-RLRPDCL--N-PDSFCKSKPRSPVITMYEDVEKP 86
             N NL    +     G  + D FS L + R  CL  N  D    +     +    E+V KP
Sbjct:    26 NINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKP 85

Query:    87 IYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXX 146
             I+LYINS G        G  T   AIYD M YVKPPI T CVG                 
Sbjct:    86 IHLYINSPG--------GVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGM 137

Query:   147 XXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR 206
                 P++ IMI QP G  +GQATD+ I  +E+  +K +L  +Y KH   T E++   + R
Sbjct:   138 RYSLPNARIMIHQPSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMER 197

Query:   207 PKYFSPSEAVEYGIIDKVLYTEKSPE---DHGVVSD 239
               + +P EA   GIID VL  E  PE   + G  SD
Sbjct:   198 DHFMTPEEAKVLGIIDHVL--EHPPETVSETGPASD 231

GO:0005739 "mitochondrion" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

UNIPROTKB|Q16740 CLPP "Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 61/153 (39%), Positives = 81/153 (52%)

Query:    81 EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
             E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG           
Sbjct:   109 ESNKKPIHMYINSPG--------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 160

Query:   141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                       P+S IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + I
Sbjct:   161 AGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220

Query:   201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 233
             E+ + R +Y SP EA E+GI+DKVL     P+D
Sbjct:   221 ESAMERDRYMSPMEAQEFGILDKVLV--HPPQD 251

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008233 "peptidase activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1858213 Clpp "ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit" [Mus musculus (taxid:10090)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 61/153 (39%), Positives = 81/153 (52%)

Query:    81 EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
             E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG           
Sbjct:   105 ESNKKPIHMYINSPG--------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 156

Query:   141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                       P+S IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + I
Sbjct:   157 AGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 216

Query:   201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 233
             E+ + R +Y SP EA E+GI+DKVL     P+D
Sbjct:   217 ESAMERDRYMSPMEAQEFGILDKVLV--HPPQD 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISA

GO:0008233 "peptidase activity" evidence=ISA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

RGD|1588583 Clpp "ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 61/153 (39%), Positives = 81/153 (52%)

Query:    81 EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
             E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG           
Sbjct:   105 ESNKKPIHMYINSPG--------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 156

Query:   141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                       P+S IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + I
Sbjct:   157 AGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVI 216

Query:   201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 233
             E+ + R +Y SP EA E+GI+DKVL     P+D
Sbjct:   217 ESAMERDRYMSPMEAQEFGILDKVLV--HPPQD 247

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IDA

ZFIN|ZDB-GENE-030131-7860 clpp "ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)" [Danio rerio (taxid:7955)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 57/145 (39%), Positives = 77/145 (53%)

Query:    81 EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
             E   KPI++YINS G        G  T   AIYD M Y+  PI T CVG           
Sbjct:    80 ESNNKPIHMYINSPG--------GVVTSGLAIYDTMQYILNPISTWCVGQAASMGSLLLA 131

Query:   141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                       P++ IM+ QP G   GQATD+ I  +E+  +K ++  +Y+KH G+  E I
Sbjct:   132 AGTAGMRHSLPNARIMVHQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHTGQLLETI 191

Query:   201 EADIRRPKYFSPSEAVEYGIIDKVL 225
             E+ + R +Y SP EA ++GIIDKVL
Sbjct:   192 ESVMERDRYMSPMEAQDFGIIDKVL 216

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LB10	CLPR4_ARATH	No assigned EC number	0.6303	0.8455	0.6819	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.766
3rd Layer	3.4.21.92	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	2e-69
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	3e-61
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	2e-58
pfam00574	182	pfam00574, CLP_protease, Clp protease	8e-56
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	3e-52
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	6e-49
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	6e-47
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	4e-40
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	1e-37
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	2e-35
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	4e-35
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	7e-30
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	2e-29
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	4e-20
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	8e-16

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  210 bits (537), Expect = 2e-69
 Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 8/145 (5%)

Query: 80  YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 139
            ED +KPIYLYINS G        G  T   AIYD M Y+KPP+ T+C+G A    ALLL
Sbjct: 35  SEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVSTICLGLAASMGALLL 86

Query: 140 GAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 199
            AG KG R ALP+S IMI QP+G   GQA+D+EI  KE+  ++  L ++ AKH G+  E+
Sbjct: 87  AAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEK 146

Query: 200 IEADIRRPKYFSPSEAVEYGIIDKV 224
           IE D  R +Y S  EA EYG+IDK+
Sbjct: 147 IEKDTDRDRYMSAEEAKEYGLIDKI 171

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  191 bits (487), Expect = 3e-61
 Identities = 74/151 (49%), Positives = 108/151 (71%), Gaps = 1/151 (0%)

Query: 80  YEDVEKPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 138
           ++D EKPIY YINSTGT+   G+ +G+ETEAFAI D M Y+KPP+ T+C+G A G AA++
Sbjct: 66  FDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMI 125

Query: 139 LGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           L AG KG RA+LP +TI++ QP     GQATD++I  KE+ + K  ++++ +++ G+T E
Sbjct: 126 LSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVE 185

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           ++  D  R  Y +P EA EYG+ID+VL + K
Sbjct: 186 KLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216

Length = 222

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  183 bits (467), Expect = 2e-58
 Identities = 71/145 (48%), Positives = 92/145 (63%), Gaps = 8/145 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED +K IYLYINS G        G  T   AIYD M ++KP + T+C+G A    A LL 
Sbjct: 58  EDPDKDIYLYINSPG--------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLA 109

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R ALP+S IMI QP+G  +GQATD+EI  +E+  +K  L ++ A+H G+  E+I
Sbjct: 110 AGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKI 169

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R  + S  EA EYG+ID+VL
Sbjct: 170 EKDTDRDNFMSAEEAKEYGLIDEVL 194

Length = 200

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  176 bits (448), Expect = 8e-56
 Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 8/148 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED +K IYLYINS G        G  T   AIYD M ++KP + T+C+G A    + +L 
Sbjct: 43  EDPDKDIYLYINSPG--------GSVTAGLAIYDTMQFIKPDVSTICLGLAASMGSFILA 94

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AG KG R ALP++ IMI QP G  +GQA+D+EI  +E+  ++  L ++YA+H G+  E+I
Sbjct: 95  AGTKGKRFALPNARIMIHQPSGGAQGQASDIEIQAEEILKIRERLNEIYAEHTGQPLEKI 154

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTE 228
           E D+ R  + S  EA EYG+ID+V+ + 
Sbjct: 155 EKDLDRDTFMSAEEAKEYGLIDEVIESR 182

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  167 bits (426), Expect = 3e-52
 Identities = 70/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)

Query: 80  YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 139
            ED +K IYLYINS G        G  T   AIYD M ++KPP+ T+C+G A    ++LL
Sbjct: 53  AEDPDKDIYLYINSPG--------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLL 104

Query: 140 GAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 199
            AG KG R ALP++ IMI QP G  +GQA+D+EI  +E+  +K  L ++YA+H G+T E+
Sbjct: 105 MAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEK 164

Query: 200 IEADIRRPKYFSPSEAVEYGIIDKVL 225
           IE D  R  + S  EA EYG+IDKV+
Sbjct: 165 IEKDTDRDTWMSAEEAKEYGLIDKVI 190

Length = 200

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  159 bits (405), Expect = 6e-49
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 10/151 (6%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
            D ++ I LYINS G        G  T   AIYD + +++P + T+C G A    A+LL 
Sbjct: 62  IDPDRDITLYINSPG--------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLA 113

Query: 141 AGAKGNRAALPSSTIMIKQP--IGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           AG  G R ALP++ I+I QP   G I GQA+D+EI  +E+  ++  L ++ A+H G++ E
Sbjct: 114 AGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVE 173

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           +I  D  R K+ +  EA +YG++D+++ + +
Sbjct: 174 KIRKDTDRDKWLTAEEAKDYGLVDQIITSYR 204

Length = 207

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  154 bits (390), Expect = 6e-47
 Identities = 73/145 (50%), Positives = 91/145 (62%), Gaps = 8/145 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED EK IYLYINS G        G  T   AIYD M ++KP + T+C+G A    A LL 
Sbjct: 54  EDPEKDIYLYINSPG--------GSITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLA 105

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R +LP+S IMI QP+G  +GQATD+EI   E+  +K  L  + A+H G++ EQI
Sbjct: 106 AGAKGKRFSLPNSRIMIHQPLGGAQGQATDIEIQANEILRLKGLLNDILAEHTGQSLEQI 165

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R  + S  EA EYG+IDKVL
Sbjct: 166 ERDTERDFFMSAEEAKEYGLIDKVL 190

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score =  136 bits (346), Expect = 4e-40
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED  K +YL+INS G        G      AIYD M +VKP + T+C+G A   A+ +L 
Sbjct: 57  EDDTKDLYLFINSPG--------GSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILA 108

Query: 141 AGAKGNRAALPSSTIMIKQP-IGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 199
            G    R A P + +MI QP     EGQA++  +  +E+  ++  + ++YA+  GK    
Sbjct: 109 GGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWV 168

Query: 200 IEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231
           I  D+ R  + S +EA  YGI+D V    +  
Sbjct: 169 ISEDMERDVFMSATEAKAYGIVDLVAVNNEEE 200

Length = 200

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  130 bits (328), Expect = 1e-37
 Identities = 68/151 (45%), Positives = 89/151 (58%), Gaps = 10/151 (6%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED EK IYLYINS G        G   +   I+D M +VKP + T+CVG A    A LL 
Sbjct: 52  EDPEKDIYLYINSPG--------GSVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLC 103

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R++L  S IMI QP+G   GQA+D+ I   E+  +K  L    ++  G+  E+I
Sbjct: 104 AGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERI 163

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231
           + D  R  + SPSEAVEYG+ID V+  +K P
Sbjct: 164 QEDTDRDFFMSPSEAVEYGLIDLVI--DKRP 192

Length = 196

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  123 bits (309), Expect = 2e-35
 Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 8/144 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
            + EK IYLYINS G        G      AIYD + ++K  + T+  G A    +++  
Sbjct: 27  VNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAM 78

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R  LP++ +MI QP G   G ATD+ I    +  V+  LV  YA   G++ E++
Sbjct: 79  AGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEEL 138

Query: 201 EADIRRPKYFSPSEAVEYGIIDKV 224
            AD+ R  + S  EAVEYG  D +
Sbjct: 139 HADLERDTWLSAREAVEYGFADTI 162

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  124 bits (313), Expect = 4e-35
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 8/148 (5%)

Query: 82  DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGA 141
           D  K I +YINS G        G       IYD M ++   + T+C G A   A++LL A
Sbjct: 82  DPGKDISIYINSPG--------GSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVA 133

Query: 142 GAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIE 201
           G KG R+ALP S +MI QP+G  +GQA+D+EI  +E++ +K EL  + A H G   +++ 
Sbjct: 134 GTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVW 193

Query: 202 ADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
           AD  R  + +  EA EYG+ID+VL  + 
Sbjct: 194 ADSDRDYWMTAQEAKEYGMIDEVLIKKP 221

Length = 221

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  110 bits (276), Expect = 7e-30
 Identities = 56/149 (37%), Positives = 78/149 (52%), Gaps = 8/149 (5%)

Query: 84  EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA 143
           E+ I +YIN  G        G      AIYD M Y+K P+ T+CVG A    ++LL AG 
Sbjct: 57  EQEIQMYINCPG--------GEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGD 108

Query: 144 KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEAD 203
           KG R ALP+S IMI Q      G   D+E+  KE+  ++  LV +Y +H     E++  D
Sbjct: 109 KGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD 168

Query: 204 IRRPKYFSPSEAVEYGIIDKVLYTEKSPE 232
           + R  + SP EA  YG+ID V+   +   
Sbjct: 169 MERDYFMSPEEAKAYGLIDSVIEPTRVKR 197

Length = 201

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  109 bits (273), Expect = 2e-29
 Identities = 53/148 (35%), Positives = 87/148 (58%), Gaps = 8/148 (5%)

Query: 82  DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGA 141
           D +KPI++YI+S G        G     FAI++++ +VKP +FT+ VG     AAL+  A
Sbjct: 51  DSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKPKVFTIGVGLVASAAALIFLA 102

Query: 142 GAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIE 201
             K +R +LP++  ++ QP+   +G ATD+EI   E+  VK+EL  + AK  G+  +++E
Sbjct: 103 AKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVE 162

Query: 202 ADIRRPKYFSPSEAVEYGIIDKVLYTEK 229
            D  R  +   S AV+YG++ +V+ T  
Sbjct: 163 KDTDRDFWLDSSSAVKYGLVFEVVETRL 190

Length = 197

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 83.6 bits (207), Expect = 4e-20
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 12/146 (8%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ++  K I L +N+ G        G       I D +   + P+     G A      +  
Sbjct: 26  DNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIAT 77

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQA--TDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           A  K      P + +    PIG   G    T  E  ++ +    A  + L A++ G+T E
Sbjct: 78  AANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTE 135

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKV 224
           ++E DI +    +  EA+EYG++D +
Sbjct: 136 KLEEDIEKDLVLTAQEALEYGLVDAL 161

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 72.2 bits (178), Expect = 8e-16
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 10/140 (7%)

Query: 85  KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAK 144
             I + INS G        G      AIY+ +   K  +     G A   A+++  AG +
Sbjct: 31  SDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDE 82

Query: 145 GNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADI 204
                 P++ +MI  P     G A D+  A   +  +   +   YA+  G + E+I A +
Sbjct: 83  --VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALM 140

Query: 205 RRPKYFSPSEAVEYGIIDKV 224
               + +  EAVE G  D++
Sbjct: 141 DAETWLTAQEAVELGFADEI 160

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	100.0
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.97
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.96
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.95
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.92
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.86
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.69
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.67
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.65
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.62
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.61
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.57
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.55
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.45
PRK10949	618	protease 4; Provisional	99.44
PRK11778	330	putative inner membrane peptidase; Provisional	99.3
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	99.1
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	98.98
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.96
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.72
PRK10949	618	protease 4; Provisional	98.53
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.23
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	98.22
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.18
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.17
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.16
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	98.08
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.06
PRK08258	277	enoyl-CoA hydratase; Provisional	97.82
PRK06213	229	enoyl-CoA hydratase; Provisional	97.79
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.78
PRK05869	222	enoyl-CoA hydratase; Validated	97.76
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	97.74
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	97.73
PRK06495	257	enoyl-CoA hydratase; Provisional	97.72
PRK08150	255	enoyl-CoA hydratase; Provisional	97.71
PRK07511	260	enoyl-CoA hydratase; Provisional	97.7
PRK06127	269	enoyl-CoA hydratase; Provisional	97.65
PRK05980	260	enoyl-CoA hydratase; Provisional	97.65
PRK06688	259	enoyl-CoA hydratase; Provisional	97.64
PRK05981	266	enoyl-CoA hydratase; Provisional	97.64
PRK06210	272	enoyl-CoA hydratase; Provisional	97.64
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	97.57
PRK08139	266	enoyl-CoA hydratase; Validated	97.57
PRK09076	258	enoyl-CoA hydratase; Provisional	97.56
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	97.54
PRK07658	257	enoyl-CoA hydratase; Provisional	97.54
PRK07260	255	enoyl-CoA hydratase; Provisional	97.54
PRK06143	256	enoyl-CoA hydratase; Provisional	97.53
PRK07938	249	enoyl-CoA hydratase; Provisional	97.53
PRK07509	262	enoyl-CoA hydratase; Provisional	97.5
PRK07657	260	enoyl-CoA hydratase; Provisional	97.5
PRK06190	258	enoyl-CoA hydratase; Provisional	97.5
PRK09245	266	enoyl-CoA hydratase; Provisional	97.49
PRK06563	255	enoyl-CoA hydratase; Provisional	97.49
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	97.48
PRK06023	251	enoyl-CoA hydratase; Provisional	97.48
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	97.47
PRK08260	296	enoyl-CoA hydratase; Provisional	97.47
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	97.45
PRK06142	272	enoyl-CoA hydratase; Provisional	97.45
PLN02921	327	naphthoate synthase	97.45
PLN02888	265	enoyl-CoA hydratase	97.44
PRK05862	257	enoyl-CoA hydratase; Provisional	97.43
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	97.41
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	97.41
PRK08138	261	enoyl-CoA hydratase; Provisional	97.41
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	97.41
PRK06494	259	enoyl-CoA hydratase; Provisional	97.4
COG3904	245	Predicted periplasmic protein [Function unknown]	97.39
PRK07854	243	enoyl-CoA hydratase; Provisional	97.39
PRK05995	262	enoyl-CoA hydratase; Provisional	97.39
PRK08290	288	enoyl-CoA hydratase; Provisional	97.38
PRK06144	262	enoyl-CoA hydratase; Provisional	97.37
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	97.37
PRK07468	262	enoyl-CoA hydratase; Provisional	97.36
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	97.35
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	97.35
PRK08140	262	enoyl-CoA hydratase; Provisional	97.35
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	97.34
PLN02600	251	enoyl-CoA hydratase	97.33
PRK07327	268	enoyl-CoA hydratase; Provisional	97.31
PRK05864	276	enoyl-CoA hydratase; Provisional	97.27
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	97.25
PRK07659	260	enoyl-CoA hydratase; Provisional	97.24
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	97.23
PRK07799	263	enoyl-CoA hydratase; Provisional	97.23
PRK08788	287	enoyl-CoA hydratase; Validated	97.21
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	97.17
PRK08259	254	enoyl-CoA hydratase; Provisional	97.17
PRK06072	248	enoyl-CoA hydratase; Provisional	97.16
PRK12478	298	enoyl-CoA hydratase; Provisional	97.16
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	97.16
PRK08252	254	enoyl-CoA hydratase; Provisional	97.11
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	97.05
PRK05870	249	enoyl-CoA hydratase; Provisional	96.99
PRK08272	302	enoyl-CoA hydratase; Provisional	96.99
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	96.98
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.96
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	96.96
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.92
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	96.91
PRK08321	302	naphthoate synthase; Validated	96.9
PRK07827	260	enoyl-CoA hydratase; Provisional	96.85
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	96.75
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.67
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	96.56
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	96.52
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.52
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	96.5
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.48
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.47
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	96.47
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	96.36
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.28
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	96.09
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.08
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	96.07
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	95.53
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	94.41
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	93.94
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	93.74
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	92.1
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	91.05
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	84.12
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	83.57

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-63  Score=436.41  Aligned_cols=186  Identities=44%  Similarity=0.633  Sum_probs=175.1

Q ss_pred             Ccccccccc-ccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCC
Q 025916           34 NLSTSFISP-FAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGG  100 (246)
Q Consensus        34 ~~~~~~~~p-~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~  100 (246)
                      +......+| +++ +..+| +.+|+|||++||++|||       |++++++++||    ++|++|||+|||||||     
T Consensus        60 ~~~~~~~~p~~~~~~~~rG-~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG-----  133 (275)
T KOG0840|consen   60 SLRAPILVPRFPIESPGRG-RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG-----  133 (275)
T ss_pred             cccccccCCcceeeccccC-CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC-----
Confidence            566678889 444 56667 22459999999999999       88999999999    7899999999999999     


Q ss_pred             CCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHH
Q 025916          101 EKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKN  180 (246)
Q Consensus       101 ~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~  180 (246)
                         |++++|+||||+|+++++||.|+|+|+|||||++||++|+||+||++|||++|||||.+++.||+.|+.++++|+.+
T Consensus       134 ---G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~  210 (275)
T KOG0840|consen  134 ---GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMR  210 (275)
T ss_pred             ---CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          181 VKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       181 ~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .++.+.++|++|||+|.|+|.++|+||+||+|+||+||||||+|++.+
T Consensus       211 ~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p  258 (275)
T KOG0840|consen  211 IKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHP  258 (275)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCC
Confidence            999999999999999999999999999999999999999999999864

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=9.9e-61  Score=413.98  Aligned_cols=182  Identities=41%  Similarity=0.638  Sum_probs=174.3

Q ss_pred             cccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHH
Q 025916           40 ISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYET  107 (246)
Q Consensus        40 ~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~  107 (246)
                      ++|.+. ++.+++++  +|+|++|+++|||       +.+++.+++||    ++++.|+|+|||||||        |+|+
T Consensus         3 ~~~~~~e~~~~~~~~--~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG--------G~V~   72 (200)
T COG0740           3 LVPMVIEQTSRGERS--YDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVT   72 (200)
T ss_pred             CCccccCcccCCCCh--hhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC--------cccc
Confidence            678888 66788877  9999999999999       66899999999    7789999999999999        9999


Q ss_pred             HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      +|++|||+|+++++||+|+|+|+|||||++|++||+||||+++|||++|||||+++++|+++|++++|+|+.++++.+.+
T Consensus        73 aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~  152 (200)
T COG0740          73 AGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNR  152 (200)
T ss_pred             hhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                      +|+++||++.|+|+++++||+||||+||++|||||+|++..+..
T Consensus       153 i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~  196 (200)
T COG0740         153 IYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA  196 (200)
T ss_pred             HHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccccc
Confidence            99999999999999999999999999999999999999887543

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=1.4e-57  Score=401.07  Aligned_cols=176  Identities=43%  Similarity=0.746  Sum_probs=168.8

Q ss_pred             CCCCccccccCCCCC-------CC----------chhHHHHHH----hhCCCCCEEEEEcCCCCC-CCCCCCchHHHHHH
Q 025916           54 GLRLRPDCLNPDSFC-------KS----------KPRSPVITM----YEDVEKPIYLYINSTGTT-KGGEKLGYETEAFA  111 (246)
Q Consensus        54 ~~~di~s~Ll~~RIi-------~~----------~a~~iiaqL----~ed~~k~I~LyINSpG~~-~~~~~~G~v~~g~a  111 (246)
                      +|+|+|++||++|||       ++          +++++++||    ++|+.++|+|||||||++ ++|+++|++++|++
T Consensus        19 ~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~gla   98 (222)
T PRK12552         19 PPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFA   98 (222)
T ss_pred             CCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHH
Confidence            348999999999999       77          999999999    577889999999999977 68898999999999


Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      |||+|++++++|+|+|+|+|||||++||++|+||+|+++|||++|||||+++..|+++|++++++|++++++.+.++|++
T Consensus        99 IyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~  178 (222)
T PRK12552         99 ICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSR  178 (222)
T ss_pred             HHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      +||++.|+|.++++||+||||+||+||||||+|+++..
T Consensus       179 ~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~  216 (222)
T PRK12552        179 NTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK  216 (222)
T ss_pred             HHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence            99999999999999999999999999999999998753

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=2.8e-56  Score=392.96  Aligned_cols=181  Identities=35%  Similarity=0.530  Sum_probs=171.7

Q ss_pred             cccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCch
Q 025916           38 SFISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGY  105 (246)
Q Consensus        38 ~~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~  105 (246)
                      .+++|.++ .+..|+++  +|+|++||++|||       +++++.+++||    .++++++|+|||||||        |+
T Consensus        28 ~~~~p~~~~~~~~~~~~--~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG--------Gs   97 (221)
T PRK14514         28 SYLNPYILEERQLNVTQ--MDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GS   97 (221)
T ss_pred             CcccceeeeeCCCCCcc--cCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC--------cc
Confidence            35889887 66667755  9999999999999       78999999998    4567899999999999        99


Q ss_pred             HHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHH
Q 025916          106 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL  185 (246)
Q Consensus       106 v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i  185 (246)
                      |++|++|||+|+++++||+|+|+|+|||||++|+++|++|+|+++|||++|||||+++..|+++|+++++++++++++.+
T Consensus        98 v~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i  177 (221)
T PRK14514         98 VYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKEL  177 (221)
T ss_pred             hhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .++|+++||++.++|+++++||+||||+||++|||||+|++.+
T Consensus       178 ~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~  220 (221)
T PRK14514        178 YTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK  220 (221)
T ss_pred             HHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence            9999999999999999999999999999999999999999864

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=4e-56  Score=387.20  Aligned_cols=182  Identities=33%  Similarity=0.516  Sum_probs=170.5

Q ss_pred             cccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHH
Q 025916           40 ISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYET  107 (246)
Q Consensus        40 ~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~  107 (246)
                      ++|.+. ++..+++.  .|+|++||++||+       +++|++|++||    ++++.++|+|||||||        |+|+
T Consensus         3 ~~p~~~~~~~~~~~~--~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG--------G~v~   72 (201)
T PRK14513          3 VIPYVIEQTGRGERM--YDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GEVY   72 (201)
T ss_pred             CCCcccccCCCCccc--cCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cchh
Confidence            356666 55566644  8999999999999       78999999999    5677899999999999        9999


Q ss_pred             HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      +|++|||+|++++++|+|+|+|+|||||++|++||++|+|+++|||++|||||+++..|+++|++++++++++.++.+.+
T Consensus        73 ~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~  152 (201)
T PRK14513         73 AGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVD  152 (201)
T ss_pred             hHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                      +|+++||++.++|.++|+||+||||+||++|||||+|+++.+.+
T Consensus       153 iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~~~  196 (201)
T PRK14513        153 IYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTRVK  196 (201)
T ss_pred             HHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCCCC
Confidence            99999999999999999999999999999999999999876544

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=3.5e-54  Score=373.76  Aligned_cols=178  Identities=39%  Similarity=0.548  Sum_probs=166.4

Q ss_pred             ccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHH
Q 025916           41 SPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETE  108 (246)
Q Consensus        41 ~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~  108 (246)
                      +|.+. .+..++..  .|+|++||++||+       +++++++++||    ++++.++|+|||||||        |+|++
T Consensus         2 ~p~~~~~~~~~~~~--~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG--------G~v~~   71 (196)
T PRK12551          2 IPIVIEESGRGERA--FDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYD   71 (196)
T ss_pred             CCcccccCCCCccc--cCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC--------cchhh
Confidence            45444 34444444  8999999999998       77899999999    5677899999999999        99999


Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      |++|||+|+++++||+|+|+|+|||||++|+++|++|+|+++|||++|||||+++..|+++|++++++++++.++.+.++
T Consensus        72 g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~  151 (196)
T PRK12551         72 GLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTE  151 (196)
T ss_pred             HHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      |+++||++.++|.++++||+||||+||++|||||+|+++.
T Consensus       152 ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        152 LSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence            9999999999999999999999999999999999999875

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=2e-53  Score=370.01  Aligned_cols=167  Identities=32%  Similarity=0.524  Sum_probs=161.6

Q ss_pred             CCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCC
Q 025916           54 GLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP  122 (246)
Q Consensus        54 ~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~  122 (246)
                      .|.|+|++||++|||       +++++++++||    ++|+.++|+|||||||        |+|++|++|||+|+++++|
T Consensus        19 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~~~~~~   90 (200)
T CHL00028         19 TWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GSVISGLAIYDTMQFVKPD   90 (200)
T ss_pred             ccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHHhcCCC
Confidence            457999999999999       78999999999    5678899999999999        9999999999999999999


Q ss_pred             EEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcC-cccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 025916          123 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR-IEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIE  201 (246)
Q Consensus       123 V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~-~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~  201 (246)
                      |+|+|+|+|||||++||++|+||+|+++|||++|||||+++ ..|+++|+++++++++++++.+.++|+++||++.++|+
T Consensus        91 V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~  170 (200)
T CHL00028         91 VHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVIS  170 (200)
T ss_pred             EEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            99999999999999999999999999999999999999998 89999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          202 ADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       202 ~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++++||+||||+||++|||||+|+++.
T Consensus       171 ~~~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        171 EDMERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             HHhhcCccCCHHHHHHcCCCcEEeecC
Confidence            999999999999999999999999765

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=4.7e-49  Score=340.04  Aligned_cols=177  Identities=43%  Similarity=0.613  Sum_probs=164.8

Q ss_pred             ccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHH
Q 025916           41 SPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETE  108 (246)
Q Consensus        41 ~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~  108 (246)
                      +|.+. .+..+++.  .|+|++|+++|+|       +++++.+++||    .+++.++|+|||||||        |++++
T Consensus         3 ~p~~~~~~~~~~~~--~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG--------G~v~~   72 (191)
T TIGR00493         3 IPMVIEQTGRGERS--FDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG--------GSITA   72 (191)
T ss_pred             CCcccccCCCCccc--ccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CCHHH
Confidence            45443 45556644  9999999999999       67889999998    4567899999999999        99999


Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      |++|||+|++++++|+|+|+|+|+|||++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++
T Consensus        73 g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~  152 (191)
T TIGR00493        73 GLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDI  152 (191)
T ss_pred             HHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      |+++||++.++|++++++|+||||+||++|||||+|++.
T Consensus       153 ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~~  191 (191)
T TIGR00493       153 LANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLTR  191 (191)
T ss_pred             HHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEecC
Confidence            999999999999999999999999999999999999863

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=1.3e-47  Score=332.79  Aligned_cols=167  Identities=33%  Similarity=0.524  Sum_probs=159.6

Q ss_pred             CCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCC
Q 025916           54 GLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP  122 (246)
Q Consensus        54 ~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~  122 (246)
                      ++.+++++||++|+|       +++++.|+++|    .+++.++|+|||||||        |+|++|++|||+|++++.|
T Consensus        12 ~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~ag~aI~d~i~~~~~~   83 (197)
T PRK14512         12 GIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKPK   83 (197)
T ss_pred             CcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CCHHHHHHHHHHHHhCCCC
Confidence            447899999999998       67889999998    3366899999999999        9999999999999999999


Q ss_pred             EEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 025916          123 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA  202 (246)
Q Consensus       123 V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~  202 (246)
                      |+|+|.|.|+|||++|+++|++|+|+++|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.++|++
T Consensus        84 V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~  163 (197)
T PRK14512         84 VFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK  163 (197)
T ss_pred             EEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCHHHHHHcCCceEEccCC
Q 025916          203 DIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       203 ~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++++|+||||+||++|||||+|+++.
T Consensus       164 ~~~~d~~lta~EA~~yGliD~I~~~~  189 (197)
T PRK14512        164 DTDRDFWLDSSSAVKYGLVFEVVETR  189 (197)
T ss_pred             hhhcCcccCHHHHHHcCCccEeecCc
Confidence            99999999999999999999999764

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=5.1e-47  Score=329.36  Aligned_cols=180  Identities=42%  Similarity=0.633  Sum_probs=167.0

Q ss_pred             cccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHH
Q 025916           40 ISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYET  107 (246)
Q Consensus        40 ~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~  107 (246)
                      ++|+.. .+..++.  ++|+++.||++|||       +++++.++++|    .+++.++|+|||||||        |+++
T Consensus         7 ~~p~~~~~~~~~~~--~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG--------G~v~   76 (200)
T PRK00277          7 LVPMVIEQTSRGER--SYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVT   76 (200)
T ss_pred             CCceeeccCCCCcc--cccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CcHH
Confidence            466655 4444443  48999999999999       67899999998    4567889999999999        9999


Q ss_pred             HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      +|++|||+|+++++||+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.+
T Consensus        77 ~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~  156 (200)
T PRK00277         77 AGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNE  156 (200)
T ss_pred             HHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      +|+++||++.++|++++++|+||||+||++|||||+|++..+
T Consensus       157 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~  198 (200)
T PRK00277        157 ILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK  198 (200)
T ss_pred             HHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence            999999999999999999999999999999999999998754

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.6e-45  Score=321.56  Aligned_cols=180  Identities=32%  Similarity=0.539  Sum_probs=165.1

Q ss_pred             ccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHH
Q 025916           41 SPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETE  108 (246)
Q Consensus        41 ~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~  108 (246)
                      +|.+. ....+...  .|++++||++|+|       +++++.++++|    .+++.++|+|||||||        |++++
T Consensus        12 ~p~~~~~~~~~~~~--~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~~   81 (207)
T PRK12553         12 LPSFIERTSYGVKE--SDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG--------GSVTA   81 (207)
T ss_pred             CCcccccCCCCCcc--ccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--------CcHHH
Confidence            66554 34444433  7999999999999       67889999998    3455899999999999        99999


Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCcccChHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      |++|||+|++++.||+|+|.|.|+|+|++|+++|++|+|++.|||++|+|||+  ++..|++.|+++++++++++++.+.
T Consensus        82 g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~  161 (207)
T PRK12553         82 GDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLE  161 (207)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998  5689999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS  230 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~  230 (246)
                      ++|+++||++.++|++++++++||||+||++|||||+|++..++
T Consensus       162 ~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~d  205 (207)
T PRK12553        162 RILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRD  205 (207)
T ss_pred             HHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhh
Confidence            99999999999999999999999999999999999999987643

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.5e-45  Score=311.76  Aligned_cols=167  Identities=33%  Similarity=0.505  Sum_probs=155.8

Q ss_pred             CCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCC
Q 025916           54 GLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP  122 (246)
Q Consensus        54 ~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~  122 (246)
                      .|+|+|++|+++|+|       +++++.++++|    .+++.++|+|+|||||        |++++|++|||+|+.++.|
T Consensus         5 ~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG--------G~v~~g~~i~~~i~~~~~~   76 (182)
T PF00574_consen    5 EWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPG--------GDVDAGLAIYDAIRSSKAP   76 (182)
T ss_dssp             EEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE--------BCHHHHHHHHHHHHHSSSE
T ss_pred             EEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC--------CccHHHHHHHHHHHhcCCC
Confidence            358999999999999       66889999997    4678899999999999        9999999999999999999


Q ss_pred             EEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 025916          123 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA  202 (246)
Q Consensus       123 V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~  202 (246)
                      |+|+|.|.|+|+|++|+++|++++|++.|||+||+|+|+.+..|++.+++++++++++.++.+.++|+++||+++++|++
T Consensus        77 v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~  156 (182)
T PF00574_consen   77 VTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEE  156 (182)
T ss_dssp             EEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred             eEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCHHHHHHcCCceEEccCC
Q 025916          203 DIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       203 ~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++++|+||+|+||++|||||+|++++
T Consensus       157 ~~~~~~~l~a~EA~~~GiiD~I~~~~  182 (182)
T PF00574_consen  157 LMDRDTWLSAEEALEYGIIDEIIESR  182 (182)
T ss_dssp             HCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred             HHhCCccccHHHHHHcCCCCEeccCC
Confidence            99999999999999999999999763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=1.1e-43  Score=300.82  Aligned_cols=160  Identities=47%  Similarity=0.725  Sum_probs=153.2

Q ss_pred             CccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEE
Q 025916           57 LRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT  125 (246)
Q Consensus        57 di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~T  125 (246)
                      |++++|+++|++       ++++++++++|    .+++.++|+|||||||        |++++|++|||.|++++.+|+|
T Consensus         1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG--------G~v~~~~~i~~~l~~~~~~v~t   72 (171)
T cd07017           1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVST   72 (171)
T ss_pred             ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEE
Confidence            789999999998       56788899998    3445699999999999        9999999999999999999999


Q ss_pred             EEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 025916          126 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR  205 (246)
Q Consensus       126 i~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~  205 (246)
                      +|.|+|+|+|++|+++|++|+|++.|||++|+|+|+++..|++.|+..++++++++++.+.++|+++||++.++|.++|+
T Consensus        73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  152 (171)
T cd07017          73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD  152 (171)
T ss_pred             EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHcCCceEE
Q 025916          206 RPKYFSPSEAVEYGIIDKV  224 (246)
Q Consensus       206 rd~~~sa~EAleyGLID~I  224 (246)
                      +++||||+||++|||||+|
T Consensus       153 ~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         153 RDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CCccccHHHHHHcCCCccC
Confidence            9999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=1.7e-42  Score=291.71  Aligned_cols=150  Identities=37%  Similarity=0.563  Sum_probs=143.8

Q ss_pred             CCCCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc
Q 025916           67 FCKSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG  142 (246)
Q Consensus        67 Ii~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG  142 (246)
                      |-+.+++.++++|    .+++.++|.|||||||        |+++++++|||+|++++.||+|+|.|+|+|+|++|+++|
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG--------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~   80 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG   80 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC--------CcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence            3377899999999    3456799999999999        999999999999999999999999999999999999999


Q ss_pred             cCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCce
Q 025916          143 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIID  222 (246)
Q Consensus       143 ~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID  222 (246)
                      ++|+|+++||+++|||||+++..|++.|++++++++++.++.+.++|+++||++.++|++++++++||||+||++|||||
T Consensus        81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD  160 (162)
T cd07013          81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD  160 (162)
T ss_pred             CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EE
Q 025916          223 KV  224 (246)
Q Consensus       223 ~I  224 (246)
                      +|
T Consensus       161 ~i  162 (162)
T cd07013         161 TI  162 (162)
T ss_pred             cC
Confidence            86

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.97  E-value=4.8e-31  Score=219.86  Aligned_cols=145  Identities=24%  Similarity=0.335  Sum_probs=137.3

Q ss_pred             CchhHHHHHHhh-CCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEE
Q 025916           70 SKPRSPVITMYE-DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA  148 (246)
Q Consensus        70 ~~a~~iiaqL~e-d~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~  148 (246)
                      ..++.+.++|.. ...++|.|||||||        |++.++++|++.|+.++.||+|++.|.|+|+|++|+++|+  +|+
T Consensus        15 ~~~~~~~~~l~~~~~~~~i~l~inspG--------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d--~~~   84 (160)
T cd07016          15 VTAKEFKDALDALGDDSDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGD--EVE   84 (160)
T ss_pred             cCHHHHHHHHHhccCCCCEEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCC--eEE
Confidence            578899999933 22399999999999        9999999999999999999999999999999999999996  799


Q ss_pred             eccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEE
Q 025916          149 ALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV  224 (246)
Q Consensus       149 a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~I  224 (246)
                      +.|+++||+|+|.++..|+..+++...+++++.++.+.+.|++++|++.+++++++.+++||+++||+++||||+|
T Consensus        85 ~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016          85 MPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             ECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.96  E-value=2.1e-29  Score=214.82  Aligned_cols=142  Identities=20%  Similarity=0.207  Sum_probs=127.0

Q ss_pred             chhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEe---cccchHHHHHHhcccC
Q 025916           71 KPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAWGEAALLLGAGAK  144 (246)
Q Consensus        71 ~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~---G~AaS~aa~IlaaG~k  144 (246)
                      .+..+...|   .+++.++|.|+|||||        |.++++++|||+|++.+.||.|+|.   |+|+|+|++|+++|+ 
T Consensus        14 ~~~~l~~~l~~A~~~~~~~i~l~inSPG--------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~-   84 (172)
T cd07015          14 TYDQFDRYITIAEQDNAEAIIIELDTPG--------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH-   84 (172)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEECCC--------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcC-
Confidence            344444445   3466799999999999        9999999999999999999999999   999999999999996 


Q ss_pred             CcEEeccCceeeeecCCcCcccC-----hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcC
Q 025916          145 GNRAALPSSTIMIKQPIGRIEGQ-----ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG  219 (246)
Q Consensus       145 gkR~a~Pns~iMiHqp~~~~~G~-----a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyG  219 (246)
                       +|++.|+++++.|+|..+ .|+     +.|.++.+.++.+++.     ++++||++.+.+++++++++|||++||++||
T Consensus        85 -~i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G  157 (172)
T cd07015          85 -LIAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEALKYG  157 (172)
T ss_pred             -ceEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcC
Confidence             599999999999999865 366     6788888888888887     9999999999999999999999999999999


Q ss_pred             CceEEccCC
Q 025916          220 IIDKVLYTE  228 (246)
Q Consensus       220 LID~Ii~~~  228 (246)
                      +||.|..+.
T Consensus       158 ~iD~ia~~~  166 (172)
T cd07015         158 VIEVVARDI  166 (172)
T ss_pred             CceeeeCCH
Confidence            999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.95  E-value=8.6e-27  Score=193.52  Aligned_cols=148  Identities=23%  Similarity=0.360  Sum_probs=134.6

Q ss_pred             CCCCchhHHHHHH---hh-CCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc
Q 025916           67 FCKSKPRSPVITM---YE-DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG  142 (246)
Q Consensus        67 Ii~~~a~~iiaqL---~e-d~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG  142 (246)
                      |.+...+.+++.|   .+ ++.+.|.|++||||        |++.++.+|++.|+..+.||.+++.|.|+|+|++|+++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G--------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~   79 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAA   79 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEEECCC--------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCC
Confidence            3356677888887   33 34699999999999        999999999999999999999999999999999999999


Q ss_pred             cCCcEEeccCceeeeecCCcCcccC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCC
Q 025916          143 AKGNRAALPSSTIMIKQPIGRIEGQ--ATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGI  220 (246)
Q Consensus       143 ~kgkR~a~Pns~iMiHqp~~~~~G~--a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGL  220 (246)
                      +  +|++.|++++++|+|..+..|.  ..+.+...+.++.+.+.+.+.+++++|++.+++++++.++.||+|+||+++||
T Consensus        80 d--~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GL  157 (161)
T cd00394          80 N--KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGL  157 (161)
T ss_pred             C--EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCC
Confidence            5  8999999999999999776654  47888888999999999999999999999999999999999999999999999


Q ss_pred             ceEE
Q 025916          221 IDKV  224 (246)
Q Consensus       221 ID~I  224 (246)
                      ||+|
T Consensus       158 vD~i  161 (161)
T cd00394         158 VDAL  161 (161)
T ss_pred             cCcC
Confidence            9986

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.92  E-value=4.6e-24  Score=182.98  Aligned_cols=149  Identities=17%  Similarity=0.226  Sum_probs=128.3

Q ss_pred             CCchhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEe---cccchHHHHHHhcc
Q 025916           69 KSKPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAWGEAALLLGAG  142 (246)
Q Consensus        69 ~~~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~---G~AaS~aa~IlaaG  142 (246)
                      +..++.+..+|   .+++.+.|.|+|||||        |+++++..||+.|..++.||.+.|.   |.|+|+|++|+++|
T Consensus        12 ~~~~~~l~~~l~~a~~~~~~~vvl~InSpG--------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~   83 (187)
T cd07020          12 PATADYLERAIDQAEEGGADALIIELDTPG--------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLAA   83 (187)
T ss_pred             hHHHHHHHHHHHHHHhCCCCEEEEEEECCC--------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhC
Confidence            45567777777   4455799999999999        9999999999999999999999998   99999999999999


Q ss_pred             cCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCce
Q 025916          143 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIID  222 (246)
Q Consensus       143 ~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID  222 (246)
                      +  .|++.|+++|++|+|..+..+...+...+.+.+..... +...|++++|++.+.+++++.+++||+++||+++||||
T Consensus        84 D--~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd  160 (187)
T cd07020          84 H--IAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVID  160 (187)
T ss_pred             C--ceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcc
Confidence            5  79999999999999985544444455555666666654 57789999999999999999999999999999999999


Q ss_pred             EEccCC
Q 025916          223 KVLYTE  228 (246)
Q Consensus       223 ~Ii~~~  228 (246)
                      +|.+..
T Consensus       161 ~v~~~~  166 (187)
T cd07020         161 LIAADL  166 (187)
T ss_pred             cccCCH
Confidence            998765

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.86  E-value=7.4e-21  Score=162.90  Aligned_cols=143  Identities=20%  Similarity=0.210  Sum_probs=119.2

Q ss_pred             chhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcE
Q 025916           71 KPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR  147 (246)
Q Consensus        71 ~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR  147 (246)
                      .+..+...|   .+++.+.|.|+|||||        |.++++..||+.|...+.||.+++-|.|+|+|++|+++|+  ++
T Consensus        14 ~~~~l~~~l~~a~~~~~~~ivl~inspG--------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d--~i   83 (178)
T cd07021          14 LAAFVERALKEAKEEGADAVVLDIDTPG--------GRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD--EI   83 (178)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEEEECcC--------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC--eE
Confidence            344444445   4456799999999999        9999999999999999999999999999999999999994  79


Q ss_pred             EeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------------CccCHHH
Q 025916          148 AALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRP-------------KYFSPSE  214 (246)
Q Consensus       148 ~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd-------------~~~sa~E  214 (246)
                      ++.|++.++.|.|.....++..+     +-+.+....+..-|++++|++.+.++++++++             .|||++|
T Consensus        84 ~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~e  158 (178)
T cd07021          84 YMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADE  158 (178)
T ss_pred             EECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHH
Confidence            99999999999998655443322     12333344455669999999999999999998             5999999


Q ss_pred             HHHcCCceEEccCC
Q 025916          215 AVEYGIIDKVLYTE  228 (246)
Q Consensus       215 AleyGLID~Ii~~~  228 (246)
                      |+++|++|.|....
T Consensus       159 A~~~g~~d~ia~~~  172 (178)
T cd07021         159 ALKVGYAEGIAGSL  172 (178)
T ss_pred             HHHhCCeEEEECCH
Confidence            99999999997654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.69  E-value=7.1e-16  Score=130.71  Aligned_cols=140  Identities=21%  Similarity=0.173  Sum_probs=117.0

Q ss_pred             chhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhccc---CCCEEEEEecccchHHHHHHhccc
Q 025916           71 KPRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAALLLGAGA  143 (246)
Q Consensus        71 ~a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i---~~~V~Ti~~G~AaS~aa~IlaaG~  143 (246)
                      ..+.+...|   .+| ..+.|.|.+||||        |++.....+++.++.+   +.||.+++-|.|+|.|..|+++++
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~g--------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D   94 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN   94 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEeeCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC
Confidence            345556555   334 4588999999999        9988877777766544   689999999999999999999995


Q ss_pred             CCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceE
Q 025916          144 KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDK  223 (246)
Q Consensus       144 kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~  223 (246)
                        .|++.|+++|++|.+..+       .+.....+..+.+.+.+.+++.+|++.+++.+++..+.||+|+||+++||||+
T Consensus        95 --~i~a~~~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~  165 (177)
T cd07014          95 --YIVANPSTLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDS  165 (177)
T ss_pred             --EEEECCCCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCccc
Confidence              799999999999876644       12234567889999999999999999999999998899999999999999999


Q ss_pred             EccC
Q 025916          224 VLYT  227 (246)
Q Consensus       224 Ii~~  227 (246)
                      |...
T Consensus       166 v~~~  169 (177)
T cd07014         166 LGSF  169 (177)
T ss_pred             CCCH
Confidence            9864

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.67  E-value=1.8e-15  Score=131.70  Aligned_cols=146  Identities=19%  Similarity=0.219  Sum_probs=116.4

Q ss_pred             hhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC--CCEEEEEecccchHHHHHHhcccCC
Q 025916           72 PRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGAGAKG  145 (246)
Q Consensus        72 a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~--~~V~Ti~~G~AaS~aa~IlaaG~kg  145 (246)
                      ...+...|   .+| ..+.|.|++||||        |++..+..|++.|+.++  .||++++.|.|+|.|.+|+++|+  
T Consensus        15 ~~~l~~~l~~a~~d~~i~~vvl~~~s~G--------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD--   84 (207)
T TIGR00706        15 PEDFDKKIKRIKDDKSIKALLLRINSPG--------GTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAAD--   84 (207)
T ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCC--------CCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCC--
Confidence            34555555   334 4689999999999        99999999999999998  89999999999999999999994  


Q ss_pred             cEEeccCceee------eecCCc------C------ccc------------ChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025916          146 NRAALPSSTIM------IKQPIG------R------IEG------------QATDVEIARKEMKNVKAELVKLYAKHFGK  195 (246)
Q Consensus       146 kR~a~Pns~iM------iHqp~~------~------~~G------------~a~di~i~a~el~~~~~~i~~iya~~Tg~  195 (246)
                      +|++.|++.+.      -|+...      |      ..|            ...+-+..-+.++...+.|.+.+++..|+
T Consensus        85 ~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~  164 (207)
T TIGR00706        85 EIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNL  164 (207)
T ss_pred             EEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            79999999753      333210      0      011            12344455567788899999999999999


Q ss_pred             CHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          196 TPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       196 ~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.++++++++.. .|+++||+++||||+|...+
T Consensus       165 ~~~~~~~~~~~~-~~~~~~A~~~gLvD~i~~~~  196 (207)
T TIGR00706       165 PVEDVKKFADGR-VFTGRQALKLRLVDKLGTED  196 (207)
T ss_pred             CHHHHHHHhcCC-cccHHHHHHcCCCcccCCHH
Confidence            999999988865 56999999999999997643

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.65  E-value=2.5e-15  Score=130.37  Aligned_cols=147  Identities=18%  Similarity=0.201  Sum_probs=117.4

Q ss_pred             CchhHHHHHH---h-hCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhcc
Q 025916           70 SKPRSPVITM---Y-EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAG  142 (246)
Q Consensus        70 ~~a~~iiaqL---~-ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG  142 (246)
                      .....++.+|   . ++..+.|.|++||||        |++..+..|++.++.++   .||++++.|.|+|+|.+|+++|
T Consensus        17 ~~~~~l~~~l~~a~~d~~i~~ivl~~~s~G--------g~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa   88 (208)
T cd07023          17 IGADSLIEQLRKAREDDSVKAVVLRINSPG--------GSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA   88 (208)
T ss_pred             CCHHHHHHHHHHHHhCCCCcEEEEEEECCC--------CCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC
Confidence            4556677777   3 344699999999999        99999999999887664   6999999999999999999999


Q ss_pred             cCCcEEeccCcee------eee------------cCCcCccc------------ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          143 AKGNRAALPSSTI------MIK------------QPIGRIEG------------QATDVEIARKEMKNVKAELVKLYAKH  192 (246)
Q Consensus       143 ~kgkR~a~Pns~i------MiH------------qp~~~~~G------------~a~di~i~a~el~~~~~~i~~iya~~  192 (246)
                      +  +|++.|++.+      +.|            ++.....|            ..++.+.....++.+.+.|.+.+++.
T Consensus        89 D--~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~  166 (208)
T cd07023          89 D--KIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEG  166 (208)
T ss_pred             C--EEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5  7999999987      333            11111111            23356666778888999999999999


Q ss_pred             hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          193 FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       193 Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +|++.+++.+..+.+. |++++|+++||||+|...
T Consensus       167 R~~~~~~~~~~~~~~~-~~a~~A~~~gLiD~i~~~  200 (208)
T cd07023         167 RGMSGERLDKLADGRV-WTGRQALELGLVDELGGL  200 (208)
T ss_pred             CCCCHHHHHHhcCCcE-EEHHHHHHcCCCcccCCH
Confidence            9999999999888555 579999999999999753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.62  E-value=1.5e-14  Score=126.38  Aligned_cols=147  Identities=20%  Similarity=0.226  Sum_probs=118.4

Q ss_pred             CchhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC--CCEEEEEecccchHHHHHHhccc
Q 025916           70 SKPRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGAGA  143 (246)
Q Consensus        70 ~~a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~--~~V~Ti~~G~AaS~aa~IlaaG~  143 (246)
                      .....+++.|   .+| ..+.|.|.+||||        |++.....|++.++.++  .||.+++.|.|+|.|.+++++|+
T Consensus        25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g--------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD   96 (214)
T cd07022          25 TSYEGIAAAIRAALADPDVRAIVLDIDSPG--------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD   96 (214)
T ss_pred             ccHHHHHHHHHHHhhCCCCcEEEEEEeCCC--------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC
Confidence            3455666666   344 4589999999999        99999999999999998  99999999999999999999995


Q ss_pred             CCcEEeccCceee------eecCCc------C------ccc------------ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916          144 KGNRAALPSSTIM------IKQPIG------R------IEG------------QATDVEIARKEMKNVKAELVKLYAKHF  193 (246)
Q Consensus       144 kgkR~a~Pns~iM------iHqp~~------~------~~G------------~a~di~i~a~el~~~~~~i~~iya~~T  193 (246)
                        ++++.|++.+.      .|....      |      ..|            +..+-+...+.++.+.+.|.+.+++.+
T Consensus        97 --~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R  174 (214)
T cd07022          97 --RIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNR  174 (214)
T ss_pred             --EEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence              79999999853      233210      0      011            234455556678889999999999999


Q ss_pred             CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      |++.+++.+.+  ...|+++||+++||||+|...+
T Consensus       175 ~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~  207 (214)
T cd07022         175 GLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLD  207 (214)
T ss_pred             CCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHH
Confidence            99999999888  6778999999999999997543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.61  E-value=1.2e-14  Score=144.23  Aligned_cols=143  Identities=17%  Similarity=0.170  Sum_probs=117.2

Q ss_pred             hHHHHHH---hhCC-CCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhcccCC
Q 025916           73 RSPVITM---YEDV-EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAGAKG  145 (246)
Q Consensus        73 ~~iiaqL---~ed~-~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG~kg  145 (246)
                      +.+..+|   .+|+ .|.|.|+|||||        |++.++..|++.|+.++   .||.+.+.|.|+|.|.+|.++|+  
T Consensus       332 ~~~~~~l~~a~~D~~VkaIVLrinSpG--------Gs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD--  401 (584)
T TIGR00705       332 DTVAALLRVARSDPDIKAVVLRINSPG--------GSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAAD--  401 (584)
T ss_pred             HHHHHHHHHHhhCCCceEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCC--
Confidence            3444455   4454 599999999999        99999999999998653   79999999999999999999995  


Q ss_pred             cEEeccCcee------eeecCC----------------------cCcc-cChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025916          146 NRAALPSSTI------MIKQPI----------------------GRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKT  196 (246)
Q Consensus       146 kR~a~Pns~i------MiHqp~----------------------~~~~-G~a~di~i~a~el~~~~~~i~~iya~~Tg~~  196 (246)
                      ++++.|++.+      +.+...                      .... .+..+.++....++...+.|.+..++.+|++
T Consensus       402 ~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~  481 (584)
T TIGR00705       402 YIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLT  481 (584)
T ss_pred             EEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            7999999976      544211                      0011 1456777788889999999999999999999


Q ss_pred             HHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916          197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLY  226 (246)
Q Consensus       197 ~e~I~~~~~rd~~~sa~EAleyGLID~Ii~  226 (246)
                      .++++++++. +.|+++||+++||||+|..
T Consensus       482 ~e~v~~ia~G-rv~tg~eA~~~GLVD~ig~  510 (584)
T TIGR00705       482 PTQVDKVAQG-RVWTGEDAVSNGLVDALGG  510 (584)
T ss_pred             HHHHHHHHhC-CCcCHHHHHHcCCcccCCC
Confidence            9999998885 5569999999999999964

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.57  E-value=1.3e-13  Score=120.28  Aligned_cols=145  Identities=19%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             hHHHHHH---hhCC-CCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcc---cCCCEEEEEecccchHHHHHHhcccCC
Q 025916           73 RSPVITM---YEDV-EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGAKG  145 (246)
Q Consensus        73 ~~iiaqL---~ed~-~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~---i~~~V~Ti~~G~AaS~aa~IlaaG~kg  145 (246)
                      ..+...|   .+|+ .+.|.|.+||||        |++.+...+++.|+.   .+.||++++.|.|+|.|.+|+++|+  
T Consensus        24 ~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD--   93 (211)
T cd07019          24 DTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN--   93 (211)
T ss_pred             HHHHHHHHHHhhCCCceEEEEEEcCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC--
Confidence            3444444   4554 599999999999        999998888887654   4679999999999999999999994  


Q ss_pred             cEEeccCceeeeecCC------------cC------cc-c----------ChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025916          146 NRAALPSSTIMIKQPI------------GR------IE-G----------QATDVEIARKEMKNVKAELVKLYAKHFGKT  196 (246)
Q Consensus       146 kR~a~Pns~iMiHqp~------------~~------~~-G----------~a~di~i~a~el~~~~~~i~~iya~~Tg~~  196 (246)
                      ++++.|++++...-..            .|      .. |          .+++-+.....++.+.+.+.+..++.++++
T Consensus        94 ~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~  173 (211)
T cd07019          94 YIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHST  173 (211)
T ss_pred             EEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            7999999887432110            00      00 1          122333445678899999999999999999


Q ss_pred             HHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       197 ~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++++++..+ +.+|+++||+++||||+|...+
T Consensus       174 ~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~~  204 (211)
T cd07019         174 PEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFD  204 (211)
T ss_pred             HHHHHHhcC-CcEEeHHHHHHcCCcccCCCHH
Confidence            999999765 6899999999999999998644

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.55  E-value=6.9e-14  Score=129.53  Aligned_cols=145  Identities=20%  Similarity=0.207  Sum_probs=115.6

Q ss_pred             HHHHHH-hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCC--CEEEEEecccchHHHHHHhcccCCcEEec
Q 025916           74 SPVITM-YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP--PIFTLCVGNAWGEAALLLGAGAKGNRAAL  150 (246)
Q Consensus        74 ~iiaqL-~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~--~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~  150 (246)
                      .++.++ .+++.|+|.|.|||||        |++.++..||+.++.++.  ||++++-++|||.|.+|.++++  +.++.
T Consensus        87 ~~l~~~~~~~~vk~vvL~inSPG--------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd--~I~a~  156 (317)
T COG0616          87 EILRAARADPSVKAVVLRINSPG--------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAAD--KIVAD  156 (317)
T ss_pred             HHHHHHhcCCCCceEEEEEECcC--------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCC--EEEec
Confidence            333344 4455899999999999        999999999999999975  6999999999999999999994  79999


Q ss_pred             cCcee------eeecCC-----------------------cCccc-ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 025916          151 PSSTI------MIKQPI-----------------------GRIEG-QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI  200 (246)
Q Consensus       151 Pns~i------MiHqp~-----------------------~~~~G-~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I  200 (246)
                      |+|.+      +.|...                       ..+.. ...+.++.-++++...+.|.+..++.++.+.+++
T Consensus       157 p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~  236 (317)
T COG0616         157 PSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAV  236 (317)
T ss_pred             CCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Confidence            99974      333221                       01112 2344445557888999999999999999999996


Q ss_pred             HHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          201 EADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       201 ~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      .+..+ ++.+++++|++.||||++.+..+
T Consensus       237 ~~~a~-g~v~~g~~A~~~gLVDelg~~~~  264 (317)
T COG0616         237 DKLAT-GRVWTGQQALELGLVDELGGLDD  264 (317)
T ss_pred             HHHhc-cceecHHHhhhcCCchhcCCHHH
Confidence            66666 78888999999999999987543

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.45  E-value=1.6e-12  Score=114.29  Aligned_cols=148  Identities=19%  Similarity=0.177  Sum_probs=116.4

Q ss_pred             CCchhHHHHHH---hhCC-CCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhccc---CCCEEEEEecccchHHHHHHhc
Q 025916           69 KSKPRSPVITM---YEDV-EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAALLLGA  141 (246)
Q Consensus        69 ~~~a~~iiaqL---~ed~-~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i---~~~V~Ti~~G~AaS~aa~Ilaa  141 (246)
                      ......++.+|   .+|+ .+.|.|.+||||        |.+.+...|++.|+.+   +.||.+++.| |+|.|.+|.++
T Consensus        28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasa   98 (222)
T cd07018          28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASA   98 (222)
T ss_pred             CccHHHHHHHHHHHhcCCCeEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhh
Confidence            34556677776   4454 599999999999        9999999999999765   4799999887 88999999999


Q ss_pred             ccCCcEEeccCceeeeecCCcC------------------ccc--------------ChHHHHHHHHHHHHHHHHHHHHH
Q 025916          142 GAKGNRAALPSSTIMIKQPIGR------------------IEG--------------QATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       142 G~kgkR~a~Pns~iMiHqp~~~------------------~~G--------------~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ++  ++++.|++.+.+.-....                  ..|              +..+-+...+.++.+.+.+.+..
T Consensus        99 ad--~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~V  176 (222)
T cd07018          99 AD--EIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADV  176 (222)
T ss_pred             CC--EEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            84  799999999987633210                  011              12233344566777899999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++..|++.+++++..+ ...+++++|++.||||+|....
T Consensus       177 a~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~~  214 (222)
T cd07018         177 AASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAYRD  214 (222)
T ss_pred             HHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcHH
Confidence            9999999999999888 6789999999999999998543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK10949 protease 4; Provisional

Probab=99.44  E-value=1.9e-12  Score=129.40  Aligned_cols=145  Identities=19%  Similarity=0.198  Sum_probs=114.0

Q ss_pred             hHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhcccCC
Q 025916           73 RSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAGAKG  145 (246)
Q Consensus        73 ~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG~kg  145 (246)
                      +.++.+|    .++..|.|.|.|||||        |++.+...|++.++..+   .||++.+-|+|||.|.+|.++++  
T Consensus       350 ~~~~~~l~~a~~D~~vkaVvLrInSpG--------Gs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad--  419 (618)
T PRK10949        350 DTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPAN--  419 (618)
T ss_pred             HHHHHHHHHHHhCCCCcEEEEEecCCC--------CcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcC--
Confidence            4556666    3445699999999999        99999999999997663   79999999999999999999994  


Q ss_pred             cEEeccCcee------eeecCCc------C------ccc-----------ChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025916          146 NRAALPSSTI------MIKQPIG------R------IEG-----------QATDVEIARKEMKNVKAELVKLYAKHFGKT  196 (246)
Q Consensus       146 kR~a~Pns~i------MiHqp~~------~------~~G-----------~a~di~i~a~el~~~~~~i~~iya~~Tg~~  196 (246)
                      +.++.|.+.+      +.|.-..      |      ..|           ...+-+.....++...+.|.+..++..|++
T Consensus       420 ~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~  499 (618)
T PRK10949        420 YIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT  499 (618)
T ss_pred             EEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            7899997753      3332110      0      011           123344445678888999999999999999


Q ss_pred             HHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       197 ~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+++++..+ ++.+++++|++.||||++...+
T Consensus       500 ~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~~  530 (618)
T PRK10949        500 PEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFD  530 (618)
T ss_pred             HHHHHHHhc-CCcccHHHHHHcCCCccCCCHH
Confidence            999998766 6899999999999999998644

>PRK11778 putative inner membrane peptidase; Provisional

Probab=99.30  E-value=1e-10  Score=109.16  Aligned_cols=143  Identities=13%  Similarity=0.094  Sum_probs=100.5

Q ss_pred             hHHHHHHh-hCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHH---hcccCCCEEEEEecccchHHHHHHhcccCCcEE
Q 025916           73 RSPVITMY-EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV---MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRA  148 (246)
Q Consensus        73 ~~iiaqL~-ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~---m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~  148 (246)
                      +.+.+.|. ..+.+.|.|.|||||        |+|...--++..   ++..+.||++++.++|||.|.++.+++  ++.+
T Consensus       111 e~i~a~l~~A~~~~aVvLridSpG--------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaA--D~I~  180 (330)
T PRK11778        111 EEITAILAVAKPGDEVLLRLESPG--------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVA--DKII  180 (330)
T ss_pred             HHHHHHHHhccCCCeEEEEEeCCC--------CchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhC--CEEE
Confidence            44555552 233478999999999        998774444444   444457999999999999999999999  4789


Q ss_pred             eccCceeeee-----cCC----------------cC-c------cc--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 025916          149 ALPSSTIMIK-----QPI----------------GR-I------EG--QATDVEIARKEMKNVKAELVKLYAKHFGKTPE  198 (246)
Q Consensus       149 a~Pns~iMiH-----qp~----------------~~-~------~G--~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e  198 (246)
                      +.|.+.+...     .|.                .| +      .+  +..+-+..-++++.+.+.|.+..+++.+  ..
T Consensus       181 A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~--~l  258 (330)
T PRK11778        181 AAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRP--QL  258 (330)
T ss_pred             ECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--cC
Confidence            9999875431     110                00 0      11  2334455566788888999999998775  23


Q ss_pred             HHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          199 QIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       199 ~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++++..+ +..+++++|+++||||+|...+
T Consensus       259 ~~~~va~-G~v~~g~~Al~~GLVD~Ig~~d  287 (330)
T PRK11778        259 DIDKVAT-GEHWYGQQALELGLVDEIQTSD  287 (330)
T ss_pred             CHHHHHh-CCCcCHHHHHHCCCCCcCCCHH
Confidence            4555555 4667899999999999998754

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=99.10  E-value=2.6e-09  Score=97.17  Aligned_cols=151  Identities=18%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             ccccccCCCCCCCchhHHHHHHhh-CCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHH
Q 025916           58 RPDCLNPDSFCKSKPRSPVITMYE-DVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  136 (246)
Q Consensus        58 i~s~Ll~~RIi~~~a~~iiaqL~e-d~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa  136 (246)
                      ++..-....|-.+.++.+...+.+ .+.++|.|.|||||        |.+.++..|.+.++..+.++++++-..|.|+|+
T Consensus        63 ~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpG--------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGT  134 (285)
T PF01972_consen   63 FLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPG--------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGT  134 (285)
T ss_pred             eeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCC--------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHH
Confidence            333333333335677788888844 45689999999999        999999999999999999999999999999999


Q ss_pred             HHHhcccCCcEEeccCceeeeecCCcCcc------------c--ChHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916          137 LLLGAGAKGNRAALPSSTIMIKQPIGRIE------------G--QATDV-----EIARKEMKNVKAELVKLYAKHFGKTP  197 (246)
Q Consensus       137 ~IlaaG~kgkR~a~Pns~iMiHqp~~~~~------------G--~a~di-----~i~a~el~~~~~~i~~iya~~Tg~~~  197 (246)
                      +|.++++  +-++.|+|.+-=-.|..+-.            +  ..+|-     .+..+.+..+++...+++.++.  +.
T Consensus       135 lIALaAD--eIvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~~--~~  210 (285)
T PF01972_consen  135 LIALAAD--EIVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDKM--DE  210 (285)
T ss_pred             HHHHhCC--eEEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CH
Confidence            9999994  78999999986444432210            0  11110     1123455666666677776654  44


Q ss_pred             HHHH---HHhcC-----CCccCHHHHHHcCC
Q 025916          198 EQIE---ADIRR-----PKYFSPSEAVEYGI  220 (246)
Q Consensus       198 e~I~---~~~~r-----d~~~sa~EAleyGL  220 (246)
                      |+.+   +.+..     |+-+|++||+++||
T Consensus       211 eka~~ia~~L~~g~~tHdypi~~eea~~lGL  241 (285)
T PF01972_consen  211 EKAEEIAEKLSSGKWTHDYPITVEEAKELGL  241 (285)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHcCC
Confidence            5444   44444     44599999999998

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=98.98  E-value=6.2e-09  Score=86.72  Aligned_cols=109  Identities=20%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             cccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC---------------------cC-------ccc--
Q 025916          117 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI---------------------GR-------IEG--  166 (246)
Q Consensus       117 ~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~---------------------~~-------~~G--  166 (246)
                      +..+.||++++.|.++|.+.+|+++|  ++.++.|.+.+...-..                     .+       ...  
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~   80 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPM   80 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS-
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCC
Confidence            45568999999999999999999999  47899999987543221                     00       011  


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          167 QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       167 ~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ...+-+..-+.++.+.+.+.+..++..|++.++++++.+. ..|+++||+++||||+|...+
T Consensus        81 s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~~  141 (154)
T PF01343_consen   81 SEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTFD  141 (154)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCHH
Confidence            2244455567788899999999999999999999999885 888999999999999997543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.7e-09  Score=99.58  Aligned_cols=150  Identities=17%  Similarity=0.195  Sum_probs=115.4

Q ss_pred             cCCCCCCCchhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEe---cccchHHH
Q 025916           63 NPDSFCKSKPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAWGEAA  136 (246)
Q Consensus        63 l~~RIi~~~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~---G~AaS~aa  136 (246)
                      .++-|-+..++.+...|   .++....+.|.+|+||        |-+.+...|...+...+.||..++.   +.|+|+|+
T Consensus        33 i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPG--------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGt  104 (436)
T COG1030          33 IDGAIDPASADYLQRALQSAEEENAAAVVLELDTPG--------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGT  104 (436)
T ss_pred             ecCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCC--------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhh
Confidence            33333355666666666   3455689999999999        9999999999999999999888877   47999999


Q ss_pred             HHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHH
Q 025916          137 LLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV  216 (246)
Q Consensus       137 ~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAl  216 (246)
                      +|+.+.+  .-+|-|.+.+---+|-.+....+.+-.     ..+.-..+..-.++..|+..+..++...++.-++++||.
T Consensus       105 yI~m~~h--iaaMAPgT~iGaa~Pi~~~g~~~~~~~-----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~  177 (436)
T COG1030         105 YILMATH--IAAMAPGTNIGAATPIAGGGTSAKEAN-----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEAL  177 (436)
T ss_pred             HHHHhcC--hhhhCCCCcccccceecCCCCCccchh-----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHH
Confidence            9999985  567889999988888654322122211     222223444557888999999999999999999999999


Q ss_pred             HcCCceEEccC
Q 025916          217 EYGIIDKVLYT  227 (246)
Q Consensus       217 eyGLID~Ii~~  227 (246)
                      ++|+||-|-.+
T Consensus       178 ~~~vid~iA~~  188 (436)
T COG1030         178 RQGVIDLIARD  188 (436)
T ss_pred             hcCccccccCC
Confidence            99999987654

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.72  E-value=1.9e-07  Score=93.24  Aligned_cols=148  Identities=7%  Similarity=-0.010  Sum_probs=109.1

Q ss_pred             CchhHHHHHH---hhCC-CCCEEEEEcC-CCCCCCCCCCchHHHHHHHHHHhcccC---CCEEEEEecccchHHHHHHhc
Q 025916           70 SKPRSPVITM---YEDV-EKPIYLYINS-TGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGA  141 (246)
Q Consensus        70 ~~a~~iiaqL---~ed~-~k~I~LyINS-pG~~~~~~~~G~v~~g~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~Ilaa  141 (246)
                      ....+++.+|   .+|+ -+.|.|.||+ ||        |++.....|++.++..+   +||+++..+. +|.+.+|.++
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g--------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~  146 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSG--------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASF  146 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccCCCC--------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhh
Confidence            4556788888   4444 5999999996 57        77777889999998764   7899887654 5666666666


Q ss_pred             ccCCcEEeccCceeeeecCC---------------------cC--------c-cc--ChHHHHHHHHHHHHHHHHHHHHH
Q 025916          142 GAKGNRAALPSSTIMIKQPI---------------------GR--------I-EG--QATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       142 G~kgkR~a~Pns~iMiHqp~---------------------~~--------~-~G--~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      +  ++.|+.|...+.++-..                     .|        + +.  ...+-+.....++.+.+.+.+..
T Consensus       147 A--D~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~V  224 (584)
T TIGR00705       147 A--DEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSV  224 (584)
T ss_pred             C--CEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6  57899999888664221                     01        1 01  23333445567788899999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCc-------cCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKY-------FSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~-------~sa~EAleyGLID~Ii~~~  228 (246)
                      ++..+++.+++.+..+.-.|       .+|++|++.||||+|...+
T Consensus       225 a~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~d  270 (584)
T TIGR00705       225 SRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYA  270 (584)
T ss_pred             HHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHH
Confidence            99999999999988875333       2899999999999997543

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK10949 protease 4; Provisional

Probab=98.53  E-value=1.4e-06  Score=87.63  Aligned_cols=147  Identities=12%  Similarity=0.071  Sum_probs=101.1

Q ss_pred             chhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHH-HHHHHHhcccC---CCEEEEEecccchHHHHHHhcc
Q 025916           71 KPRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEA-FAIYDVMGYVK---PPIFTLCVGNAWGEAALLLGAG  142 (246)
Q Consensus        71 ~a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g-~aIyd~m~~i~---~~V~Ti~~G~AaS~aa~IlaaG  142 (246)
                      .-.+++..|   .+| .-+.|.|.|||||        |...+. ..|++.|+..+   .||+++ ...+++.+.+|.+++
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g--------G~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaA  166 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA--------GADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFA  166 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCCC--------CccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhC
Confidence            445777777   344 4599999999998        765544 68999887775   688875 333345555555555


Q ss_pred             cCCcEEeccCceeeeecCCcC-----------------------------c-cc--ChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          143 AKGNRAALPSSTIMIKQPIGR-----------------------------I-EG--QATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       143 ~kgkR~a~Pns~iMiHqp~~~-----------------------------~-~G--~a~di~i~a~el~~~~~~i~~iya  190 (246)
                        ++.|+.|...+.++-....                             + +.  ...+-+.....+..+.+.+.+..+
T Consensus       167 --D~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA  244 (618)
T PRK10949        167 --NKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVA  244 (618)
T ss_pred             --CEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              5789999988876543210                             1 01  122233344567788899999999


Q ss_pred             HHhCCCHHHHHHHhcC-------CCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~r-------d~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..+++.+++....++       ---++|++|++.||||+|....
T Consensus       245 ~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~d  289 (618)
T PRK10949        245 ANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSA  289 (618)
T ss_pred             HHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHH
Confidence            9999999999644332       1236899999999999998653

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.23  E-value=6.4e-06  Score=79.13  Aligned_cols=123  Identities=19%  Similarity=0.289  Sum_probs=78.5

Q ss_pred             hhCCCCCEEEEEcCCCCCCC--CCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~~--~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+.-.-||.-+|||||...+  -|.-|...+.......|-..+.|+.++++|.++|.|++.+++|  +..+++||+.+.+
T Consensus       217 Aekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a--D~VlMle~A~ysV  294 (431)
T PLN03230        217 AEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG--NRMLMMENAVYYV  294 (431)
T ss_pred             HHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC--CEEEEecCCEEEe
Confidence            44557899999999994311  0111222222222334456678999999999999999999888  4789999999877


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                      =.|.+..       .+.++.               ..+. ++-.+    ..-+||+++++.|+||+|+..+...
T Consensus       295 isPEgaA-------sILwkd---------------~~~A-~eAAe----alkitA~dL~~~GiID~II~Ep~gg  341 (431)
T PLN03230        295 ASPEACA-------AILWKS---------------AAAA-PKAAE----ALRITAAELVKLGVVDEIVPEPLGG  341 (431)
T ss_pred             cCHHHHH-------HHHhcc---------------ccch-HHHHH----HcCCCHHHHHhCCCCeEeccCCCCC
Confidence            6665321       000000               0000 11111    2268999999999999999877543

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=98.22  E-value=2.2e-05  Score=66.33  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      .....++..+...+.|+.+.+-|.|.+.|+.+++++  +.|++.++++|.+..+..|..-..--               .
T Consensus        80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~p~~g~---------------~  142 (195)
T cd06558          80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLVPGGGG---------------T  142 (195)
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCCCCCcH---------------H
Confidence            344667777778899999999999999999999998  58999999998876665443200000               1


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ..+.+..|  .....+.+-.++.++++||+++||||++.+.
T Consensus       143 ~~l~~~~g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~  181 (195)
T cd06558         143 QRLPRLVG--PARARELLLTGRRISAEEALELGLVDEVVPD  181 (195)
T ss_pred             HHHHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence            11222212  3333444445788999999999999999975

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.18  E-value=2.2e-05  Score=73.33  Aligned_cols=123  Identities=24%  Similarity=0.312  Sum_probs=82.2

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+.-.-||.-.|||||...  .-|.-|....+.....+|-..+.|+.++++|.++|.|++.++.+  +..+++|++.+.+
T Consensus       147 A~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a--D~v~m~~~A~~sv  224 (319)
T PRK05724        147 AEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG--DRVLMLEYSTYSV  224 (319)
T ss_pred             HHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc--CeeeeecCceEee
Confidence            4455789999999999442  11112333333444555667789999999999999999888877  5789999999887


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                      =.|.+...       +..+               ... ..++..+    -..+||+++++.|+||+|+..+...
T Consensus       225 isPEg~a~-------Il~~---------------~~~-~a~~aae----~~~ita~~l~~~g~iD~II~Ep~gg  271 (319)
T PRK05724        225 ISPEGCAS-------ILWK---------------DAS-KAPEAAE----AMKITAQDLKELGIIDEIIPEPLGG  271 (319)
T ss_pred             cCHHHHHH-------HHhc---------------Cch-hHHHHHH----HcCCCHHHHHHCCCceEeccCCCCC
Confidence            77764211       0000               001 1222222    3347999999999999999876443

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.17  E-value=1.1e-05  Score=73.11  Aligned_cols=120  Identities=23%  Similarity=0.342  Sum_probs=78.5

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+.-.-||.-.+||||..-  .-|.-|...........|-..+.|+.++++|.|+|.|++.++.+  +..++.|++.+.+
T Consensus        94 A~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v  171 (256)
T PRK12319         94 AEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA--DQVWMLENTMYAV  171 (256)
T ss_pred             HHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC--CEEEEecCceEEE
Confidence            4445789999999999432  11111322222333344455678999999999999999999877  5789999999888


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      =.|.+...       +..+              .  ....++..+.+    -+||.++.+.|+||+|++..
T Consensus       172 ~~pe~~a~-------il~~--------------~--~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e~  215 (256)
T PRK12319        172 LSPEGFAS-------ILWK--------------D--GSRATEAAELM----KITAGELLEMGVVDKVIPEH  215 (256)
T ss_pred             cCHHHHHH-------HHhc--------------C--cccHHHHHHHc----CCCHHHHHHCCCCcEecCCC
Confidence            77764211       0000              0  01122222333    35999999999999999875

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.16  E-value=1.4e-05  Score=74.55  Aligned_cols=123  Identities=21%  Similarity=0.309  Sum_probs=80.3

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+.-.-||.-.+||||...  .-|..|..........+|...+.|+.++++|.|+|.|++.++.+  +..+++||+.+.+
T Consensus       147 A~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a--D~v~m~~~a~~sV  224 (316)
T TIGR00513       147 AERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG--DKVNMLEYSTYSV  224 (316)
T ss_pred             HHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC--CEEEEecCceEEe
Confidence            4455789999999999432  11222333333333444556679999999999999999877766  5789999999988


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                      =.|.+...       +..+.    .            ...++..+.    .-+||+++++.|+||.|+..+...
T Consensus       225 isPEg~a~-------Il~kd----~------------~~a~~aae~----~~~ta~~l~~~G~iD~II~ep~~g  271 (316)
T TIGR00513       225 ISPEGCAA-------ILWKD----A------------SKAPKAAEA----MKITAPDLKELGLIDSIIPEPLGG  271 (316)
T ss_pred             cCHHHHHH-------Hhccc----h------------hhHHHHHHH----ccCCHHHHHHCCCCeEeccCCCCc
Confidence            77764310       00000    0            001222222    345899999999999999877443

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=98.08  E-value=4.4e-05  Score=68.58  Aligned_cols=122  Identities=20%  Similarity=0.228  Sum_probs=82.2

Q ss_pred             CCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHh---cccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceee
Q 025916           82 DVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVM---GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIM  156 (246)
Q Consensus        82 d~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m---~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iM  156 (246)
                      +..-||...+|+||...  .-|..|-...+-.+..++   ...+.|+.++++|.++|.|++-+..+. +..+++|++.+-
T Consensus        64 ~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~a-d~v~Alp~A~i~  142 (238)
T TIGR03134        64 DDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGAMVH  142 (238)
T ss_pred             cCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCc-CeEEEcCCcEEE
Confidence            46789999999999553  333444444444333444   455599999999999998887775444 678999999886


Q ss_pred             eecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC--CCccCHHHHHHcCCceEEccCCCC
Q 025916          157 IKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR--PKYFSPSEAVEYGIIDKVLYTEKS  230 (246)
Q Consensus       157 iHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~r--d~~~sa~EAleyGLID~Ii~~~~~  230 (246)
                      .-.|.+.                          +..+.++.+++++..+.  .+-.+++.+.+.|+||.|+++...
T Consensus       143 vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~  192 (238)
T TIGR03134       143 VMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVADA  192 (238)
T ss_pred             ecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence            5544431                          11111333444444332  356788899999999999987754

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.06  E-value=3.7e-05  Score=71.84  Aligned_cols=119  Identities=22%  Similarity=0.274  Sum_probs=79.2

Q ss_pred             hhCCCCCEEEEEcCCCCCCC--CCCCchHHHHHHHHH---HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCce
Q 025916           80 YEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYD---VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST  154 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~~--~~~~G~v~~g~aIyd---~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~  154 (246)
                      .+.-.-||.-.|+|||....  -|.-|.   +-+|..   +|...+.|+.++++|.++|.|++.++.+  +..+++|+|.
T Consensus       150 A~~f~lPIItlvDTpGA~~G~~AE~~G~---~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a--D~V~m~e~a~  224 (322)
T CHL00198        150 ANKFGLPILTFIDTPGAWAGVKAEKLGQ---GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG--DSIMMLEYAV  224 (322)
T ss_pred             HHHcCCCEEEEEeCCCcCcCHHHHHHhH---HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC--CeEEEeCCeE
Confidence            44557899999999994320  011122   234444   3456679999999999999999888876  5789999999


Q ss_pred             eeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916          155 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS  230 (246)
Q Consensus       155 iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~  230 (246)
                      +.+=.|.+...    =+                 |     ++.+...+..+ -.-+||++-+++|+||+|+..+..
T Consensus       225 ~sVisPEg~a~----Il-----------------~-----~d~~~a~~aA~-~~~ita~dL~~~giiD~ii~Ep~g  273 (322)
T CHL00198        225 YTVATPEACAA----IL-----------------W-----KDSKKSLDAAE-ALKITSEDLKVLGIIDEIIPEPIG  273 (322)
T ss_pred             EEecCHHHHHH----HH-----------------h-----cchhhHHHHHH-HcCCCHHHHHhCCCCeEeccCCCC
Confidence            98877764311    00                 0     11111111111 244889999999999999987644

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=97.82  E-value=0.00019  Score=65.09  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=69.8

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+.....|.. +..--..               .+
T Consensus       104 ~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~---------------~l  166 (277)
T PRK08258        104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVGLAGADMGACA---------------LL  166 (277)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccCcCCCCchHHH---------------HH
Confidence            46677888899999999999999999999999  479999999987765554443 1111110               11


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|.  ....+++-....++++||+++||||+|....
T Consensus       167 ~~~vG~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  203 (277)
T PRK08258        167 PRIIGQ--GRASELLYTGRSMSAEEGERWGFFNRLVEPE  203 (277)
T ss_pred             HHHhCH--HHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence            111122  2233444456899999999999999998643

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=97.79  E-value=0.00017  Score=63.45  Aligned_cols=101  Identities=20%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC-ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn-s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      ...++..|...+.||.+.+-|.|.+.|..|+++++  .|++.++ ++|.+-....|..  +....     .        .
T Consensus        80 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D--~rva~~~~a~f~~pe~~~Gl~--~~~~~-----~--------~  142 (229)
T PRK06213         80 GSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSAD--YRIGVHGPFKIGLNEVAIGMT--MPHAA-----I--------E  142 (229)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCC--eeeEecCCcEEECchhhhCCc--CChHH-----H--------H
Confidence            34566677788899999999999999999999994  7999998 8776533322221  11100     0        0


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.++.|  .....+++-.+..|+|+||+++||||+|....
T Consensus       143 ~l~~~~g--~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~  181 (229)
T PRK06213        143 LARDRLT--PSAFQRAVINAEMFDPEEAVAAGFLDEVVPPE  181 (229)
T ss_pred             HHHHHcC--HHHHHHHHHcCcccCHHHHHHCCCceeccChH
Confidence            1111222  22334455567889999999999999998543

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.78  E-value=0.00017  Score=73.39  Aligned_cols=123  Identities=18%  Similarity=0.226  Sum_probs=79.7

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+.-.-||.-.|+|||...  .-|..|...+......+|-....|+.++++|.|+|.|++.++.+  +..+|+|++.+.+
T Consensus       238 AekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a--D~VlMle~A~~sV  315 (762)
T PLN03229        238 ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA--NKLLMLENAVFYV  315 (762)
T ss_pred             HHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC--CEEEEecCCeEEe
Confidence            4455789999999999432  12223333223333444556678999999999999999988887  4689999998776


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                      -.|.+..       .               |+-+.. ....+..+    -.-+||++-+++|+||.|+..+...
T Consensus       316 isPEgaA-------s---------------ILwkd~-~~A~eAAe----~lkiTa~dL~~lGiiD~IIpEp~gg  362 (762)
T PLN03229        316 ASPEACA-------A---------------ILWKSA-KAAPKAAE----KLRITAQELCRLQIADGIIPEPLGG  362 (762)
T ss_pred             cCHHHHH-------H---------------HHhcCc-ccHHHHHH----HcCCCHHHHHhCCCCeeeccCCCCc
Confidence            6665321       0               110000 01111111    2348899999999999999876443

>PRK05869 enoyl-CoA hydratase; Validated

Probab=97.76  E-value=0.00017  Score=63.52  Aligned_cols=98  Identities=16%  Similarity=0.257  Sum_probs=68.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .++..|...+.||.+.+-|.|.+.|..+.++++  .|++.++++|-+-....|.. +-.. .               ..+
T Consensus        90 ~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l  151 (222)
T PRK05869         90 QAVDAVAAIPKPTVAAITGYALGAGLTLALAAD--WRVSGDNVKFGATEILAGLAPSGDG-M---------------ARL  151 (222)
T ss_pred             HHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCC--EEEecCCCEEcCchhccCCCCCccH-H---------------HHH
Confidence            466778888999999999999999999999994  79999998876544333321 1100 0               012


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  .....+++-...+|+|+||+++||||+|.+..
T Consensus       152 ~~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  188 (222)
T PRK05869        152 TRAAG--PSRAKELVFSGRFFDAEEALALGLIDEMVAPD  188 (222)
T ss_pred             HHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch
Confidence            22222  23334445456799999999999999998643

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=97.74  E-value=0.00023  Score=63.87  Aligned_cols=100  Identities=17%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-++++++  .|++.++++|-+-....|..   .+..-    ...        +
T Consensus        84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~---p~~g~----~~~--------l  146 (261)
T PRK03580         84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAAD--FIVCADNASFALPEAKLGIV---PDSGG----VLR--------L  146 (261)
T ss_pred             hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCC--EEEecCCCEEeCcccccCcC---CCccH----HHH--------H
Confidence            3456677788899999999999999999999994  79999999885432222221   11100    000        1


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..  ......+++-....++++||+++||||+|.+..
T Consensus       147 ~~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  183 (261)
T PRK03580        147 PKRL--PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQA  183 (261)
T ss_pred             HHHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEecCHh
Confidence            1111  223334444456789999999999999998754

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=97.73  E-value=0.00024  Score=62.76  Aligned_cols=104  Identities=18%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      .....++..|..++.||.+.+-|.|.+.|+.+++++  +.|++.+++.|-+.....|..-..--..              
T Consensus        77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G~~p~~g~~~--------------  140 (245)
T PF00378_consen   77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALAC--DFRIAAEDAKFGFPEVRLGIFPGAGGTF--------------  140 (245)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHS--SEEEEETTTEEETGGGGGTSSSTSTHHH--------------
T ss_pred             hhhccccccchhhhhheeeccccccccccccccccc--ceEEeecccceeeeecccCccccccccc--------------
Confidence            344667888888899999999999999999999999  5899999999544333222211111111              


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                       .+.+..|.  ....+++-....++|+||+++||||+|++..+
T Consensus       141 -~l~r~~g~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~  180 (245)
T PF00378_consen  141 -RLPRLIGP--SRARELLLTGEPISAEEALELGLVDEVVPDEE  180 (245)
T ss_dssp             -HHHHHHHH--HHHHHHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred             -ccceeeec--ccccccccccccchhHHHHhhcceeEEcCchh
Confidence             11111111  11122333357889999999999999998664

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=97.72  E-value=0.00017  Score=64.64  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|...+.||.+.+-|.|.+.|.-|.++++  .|++.++++|-+-....|..|-..-                  +.
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~~~~~~------------------l~  147 (257)
T PRK06495         88 ECFHAIRECAKPVIAAVNGPALGAGLGLVASCD--IIVASENAVFGLPEIDVGLAGGGKH------------------AM  147 (257)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEeeChhhccCccccHHH------------------HH
Confidence            456677788899999999999999999999994  7999999988765444444322110                  12


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  .....+++-....++++||+++||||+|.+..
T Consensus       148 ~~~g--~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~  183 (257)
T PRK06495        148 RLFG--HSLTRRMMLTGYRVPAAELYRRGVIEACLPPE  183 (257)
T ss_pred             HHhC--HHHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence            2223  34445555567899999999999999998643

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=97.71  E-value=0.00031  Score=63.03  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=67.6

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ..+++.|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+-....|.. +-.. ..               .
T Consensus        82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~~---------------~  143 (255)
T PRK08150         82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAA--HIRVADESTYFALPEGQRGIFVGGGG-SV---------------R  143 (255)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhC--CEEEEeCCCEEeccccccCCCCCccH-HH---------------H
Confidence            345677888899999999999999999999999  479999999886533333321 1100 00               0


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++=....|+++||+++||||+|....
T Consensus       144 l~~~iG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK08150        144 VPRLIG--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG  181 (255)
T ss_pred             HHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence            111222  22233344446789999999999999998754

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=97.70  E-value=0.00036  Score=62.45  Aligned_cols=99  Identities=11%  Similarity=0.066  Sum_probs=69.7

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ..++..|...+.||.+.+-|.|.+.|..|++++  +.|++.++++|-+.....|.. +-..-                ..
T Consensus        88 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~----------------~~  149 (260)
T PRK07511         88 HDWIRAIRAFPKPVIAAVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVKVGLTPDGGGS----------------WF  149 (260)
T ss_pred             HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEeeCCCEEeccccccCcCCCchHH----------------HH
Confidence            346677788899999999999999999999999  589999999887644433322 11000                00


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..  ....-.+++-....|+++||+++||||+|.+..
T Consensus       150 l~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  187 (260)
T PRK07511        150 LARAL--PRQLATELLLEGKPISAERLHALGVVNRLAEPG  187 (260)
T ss_pred             HHHHh--CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence            11111  233344555557899999999999999998654

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=97.65  E-value=0.00027  Score=63.76  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      +++.|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+.....|..-...-..               .+.+
T Consensus        98 ~~~~i~~~~kPvIaav~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~  160 (269)
T PRK06127         98 AQAALADYAKPTIACIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARLGLGYGYDGVK---------------NLVD  160 (269)
T ss_pred             HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhhCCCCCccHHH---------------HHHH
Confidence            5567778899999999999999999999999  4799999999877555444321000000               0111


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..|  .....+++-....++++||+++||||+|.+..
T Consensus       161 ~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  195 (269)
T PRK06127        161 LVG--PSAAKDLFYTARRFDAAEALRIGLVHRVTAAD  195 (269)
T ss_pred             HhC--HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence            112  23344455457789999999999999999643

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=97.65  E-value=0.00026  Score=63.42  Aligned_cols=99  Identities=15%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|...+.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..-..--.               ..+.
T Consensus        91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~  153 (260)
T PRK05980         91 AMTARLEAFPKPVIAAVNGLAFGGGCEITEAV--HLAIASERALFAKPEIRLGMPPTFGGT---------------QRLP  153 (260)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhC--CEEEecCCCEecCcccccCCCCCchHh---------------hHHH
Confidence            35667778899999999999999999999999  479999999886533332321000000               0112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....++++||+++||||+|.+..
T Consensus       154 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  189 (260)
T PRK05980        154 RLAG--RKRALELLLTGDAFSAERALEIGLVNAVVPHE  189 (260)
T ss_pred             hhcC--HHHHHHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence            2222  22334444456789999999999999998654

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=97.64  E-value=0.0003  Score=62.81  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ...+++.|..++.||.+.+-|.|.+.|.-+++++  +.|++.++++|-+.....|.....--..               .
T Consensus        85 ~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~---------------~  147 (259)
T PRK06688         85 VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALAC--DLVYASESAKFSLPFAKLGLCPDAGGSA---------------L  147 (259)
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcchhh---------------H
Confidence            3457778888899999999999999999999999  4799999998877544433321100000               0


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       148 l~~~~G--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~  185 (259)
T PRK06688        148 LPRLIG--RARAAEMLLLGEPLSAEEALRIGLVNRVVPAA  185 (259)
T ss_pred             HHHHhh--HHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence            111112  12223333345679999999999999998643

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=97.64  E-value=0.00023  Score=63.87  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-+.+++  +.|++.++++|-+..+..|..-..--..               .+.
T Consensus        94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG~~p~~g~~~---------------~l~  156 (266)
T PRK05981         94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIGLVPDGGSTW---------------LLP  156 (266)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcCCCCCccHHH---------------HHH
Confidence            46677888899999999999999999999999  4799999999876655444311000000               011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  .....+++-....|+++||+++||||+|.+..
T Consensus       157 ~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (266)
T PRK05981        157 RLVG--KARAMELSLLGEKLPAETALQWGLVNRVVDDA  192 (266)
T ss_pred             HHhH--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence            1111  12223344446789999999999999998654

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=97.64  E-value=0.00023  Score=64.11  Aligned_cols=97  Identities=11%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++.|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+..+..|.. +-..-.                .+.
T Consensus       100 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~----------------~l~  161 (272)
T PRK06210        100 RYHFLTALRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFARRGLIAEHGISW----------------ILP  161 (272)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHhcCCCCCCchhh----------------hhH
Confidence            4567778899999999999999999999999  479999999998765554431 111000                011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..  ......+++-.+..++|+||+++||||+|....
T Consensus       162 ~~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  197 (272)
T PRK06210        162 RLV--GHANALDLLLSARTFYAEEALRLGLVNRVVPPD  197 (272)
T ss_pred             hhh--CHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence            111  233445555557888999999999999998653

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=97.57  E-value=0.00044  Score=61.89  Aligned_cols=99  Identities=13%  Similarity=0.117  Sum_probs=69.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+.....|..-..--               ...+.
T Consensus        83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~  145 (255)
T PRK09674         83 QLWQRLQAFNKPLIAAVNGYALGAGCELALLC--DIVIAGENARFGLPEITLGIMPGAGG---------------TQRLI  145 (255)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEeCchhhcCCCCCccH---------------HHHHH
Confidence            46777888899999999999999999999999  47999999988765444333110000               01122


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       146 ~~ig--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK09674        146 RSVG--KSLASQMVLTGESITAQQAQQAGLVSEVFPPE  181 (255)
T ss_pred             HHhC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence            2223  23334455556789999999999999998654

>PRK08139 enoyl-CoA hydratase; Validated

Probab=97.57  E-value=0.00051  Score=61.98  Aligned_cols=98  Identities=11%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+-....|......-.                .+.
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~~~----------------~l~  156 (266)
T PRK08139         95 RVMQAIVALPQPVIARVHGIATAAGCQLVASC--DLAVAADTARFAVPGVNIGLFCSTPMV----------------ALS  156 (266)
T ss_pred             HHHHHHHhCCCCEEEEECceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcCCCCCccHH----------------HHH
Confidence            35667788899999999999999999999999  479999999886544444432111100                011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       157 r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  192 (266)
T PRK08139        157 RNVP--RKQAMEMLLTGEFIDAATAREWGLVNRVVPAD  192 (266)
T ss_pred             HHhC--HHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence            2222  22334445457788999999999999999753

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=97.56  E-value=0.00057  Score=61.26  Aligned_cols=97  Identities=12%  Similarity=0.080  Sum_probs=67.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cC-hHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~-a~di~i~a~el~~~~~~i~~i  188 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+-....|.. +- .+.                 .
T Consensus        86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~  146 (258)
T PRK09076         86 EAFEALSAFRGVSIAAINGYAMGGGLECALAC--DIRIAEEQAQMALPEASVGLLPCAGGTQ-----------------N  146 (258)
T ss_pred             HHHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEecCCCEeeCcccccCCCCCccHHH-----------------H
Confidence            35667788899999999999999999999999  479999999886643333321 11 110                 1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|.  ....+++=....|+++||+++||||+|....
T Consensus       147 l~~~iG~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  184 (258)
T PRK09076        147 LPWLVGE--GWAKRMILCGERVDAATALRIGLVEEVVEKG  184 (258)
T ss_pred             HHHHhCH--HHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence            1122222  2223344446789999999999999998754

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=97.54  E-value=0.00041  Score=62.39  Aligned_cols=99  Identities=16%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..-...-..               .+.
T Consensus        87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~~~g~~~---------------~l~  149 (261)
T PRK11423         87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSC--DLIIAASTSTFAMTPANLGVPYNLSGIL---------------NFT  149 (261)
T ss_pred             HHHHHHHhCCCCEEEEEecEEechHHHHHHhC--CEEEecCCCEecCchhhcCCCCCccHHH---------------HHH
Confidence            45677788899999999999999999999998  4799999988765443333210000010               112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....++++||+++||||+|.+..
T Consensus       150 ~~vg--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~  185 (261)
T PRK11423        150 NDAG--FHIVKEMFFTASPITAQRALAVGILNHVVEVE  185 (261)
T ss_pred             HHhH--HHHHHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence            2222  23334444456789999999999999998643

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=97.54  E-value=0.00052  Score=61.27  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ..++..|...+.||...+-|.|.+.|.-+++++  +-|++.++++|-+-....|.. |-.. .               ..
T Consensus        84 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~  145 (257)
T PRK07658         84 QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC--HIRFATESAKLGLPELNLGLIPGFAG-T---------------QR  145 (257)
T ss_pred             HHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhC--CEEEecCCCcccCcccccCCCCCCcH-H---------------HH
Confidence            346677888899999999999999999999999  479999998876533333321 1110 0               00


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-....++++||+++||||+|.+..
T Consensus       146 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  183 (257)
T PRK07658        146 LPRYVG--KAKALEMMLTSEPITGAEALKWGLVNGVFPEE  183 (257)
T ss_pred             HHHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecChh
Confidence            111222  22233445457889999999999999998643

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=97.54  E-value=0.00019  Score=64.09  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|..|+++++  -|++.++++|.+-....|..   .+..-    .        ..+.
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~  151 (255)
T PRK07260         89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAAD--FCIASTKTKFIQAFVGVGLA---PDAGG----L--------FLLT  151 (255)
T ss_pred             HHHHHHHcCCCCEEEEecCeeehhhHHHHHhCC--EEEEeCCCEEechHhhcCCC---CCCch----h--------hhhH
Confidence            456677888999999999999999999999995  79999999886522222211   01000    0        0111


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  .....+++-....++|+||+++||||+|.+..
T Consensus       152 ~~vg--~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~  187 (255)
T PRK07260        152 RAIG--LNRATHLAMTGEALTAEKALEYGFVYRVAESE  187 (255)
T ss_pred             HhhC--HHHHHHHHHhCCccCHHHHHHcCCcceecCHh
Confidence            2222  23344555557899999999999999998654

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=97.53  E-value=0.00073  Score=60.64  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..+++.|...+.||.+.+-|.|.+.|.-|.++++  .|++.++++|.+-....|.   +....             ...+
T Consensus        90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~---p~~~~-------------~~~l  151 (256)
T PRK06143         90 RDLCDAVRHFPVPVIARIPGWCLGGGLELAAACD--LRIAAHDAQFGMPEVRVGI---PSVIH-------------AALL  151 (256)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCC--EEEecCCCEEeCCccccCC---CCccH-------------HHHH
Confidence            3466777888999999999999999999999994  7999999988653333332   11100             0112


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  .....+++-....++|+||+++||||+|.+..
T Consensus       152 ~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  188 (256)
T PRK06143        152 PRLIG--WARTRWLLLTGETIDAAQALAWGLVDRVVPLA  188 (256)
T ss_pred             HHhcC--HHHHHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence            23333  23444555567899999999999999998643

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=97.53  E-value=0.0004  Score=62.04  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|+++++  .|++.++++|.+-....|..|-..                  .+.
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~G~~g~~~------------------~l~  144 (249)
T PRK07938         85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNAD--VIVASDDATFGLPEVDRGALGAAT------------------HLQ  144 (249)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCC--EEEEeCCCEeeCccceecCchhHH------------------HHH
Confidence            355667788899999999999999999999994  799999998865333333322110                  112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....++++||+++||||+|.+..
T Consensus       145 ~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  180 (249)
T PRK07938        145 RLVP--QHLMRALFFTAATITAAELHHFGSVEEVVPRD  180 (249)
T ss_pred             HhcC--HHHHHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence            2222  33334455557899999999999999998643

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=97.50  E-value=0.00046  Score=61.80  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      ++..|..++.||.+.+-|.|.+.|.-|.++++  .|++.++++|-+.....|...   +..-            ...+.+
T Consensus        94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p---~~g~------------~~~l~~  156 (262)
T PRK07509         94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEAKWGLVP---DMAG------------TVSLRG  156 (262)
T ss_pred             HHHHHHhCCCCEEEEECCeeecchHHHHHhCC--EEEecCCCEeecchhccCCCC---CchH------------HHHHHH
Confidence            34556778899999999999999999999994  799999998877554433311   1000            001122


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY  226 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~  226 (246)
                      ..  ......+++-....|+++||+++||||+|.+
T Consensus       157 ~~--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  189 (262)
T PRK07509        157 LV--RKDVARELTYTARVFSAEEALELGLVTHVSD  189 (262)
T ss_pred             Hh--CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence            22  2333445555578899999999999999974

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=97.50  E-value=0.00055  Score=61.36  Aligned_cols=97  Identities=21%  Similarity=0.219  Sum_probs=67.0

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .+++.|...+.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+-....|.. + -.+.                 .
T Consensus        88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~p~~g~~~-----------------~  148 (260)
T PRK07657         88 TTMEMVEQLPQPVIAAINGIALGGGLELALAC--DFRIAAESASLGLTETTLAIIPGAGGTQ-----------------R  148 (260)
T ss_pred             HHHHHHHhCCCCEEEEEcCEeechHHHHHHhC--CEEEeeCCCEEcCchhccCcCCCccHHH-----------------H
Confidence            45677778889999999999999999999999  479999999886644443321 1 1111                 0


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-....|+++||+++||||+|....
T Consensus       149 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  186 (260)
T PRK07657        149 LPRLIG--VGRAKELIYTGRRISAQEAKEIGLVEFVVPAH  186 (260)
T ss_pred             HHHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHH
Confidence            111112  12233344446679999999999999998654

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=97.50  E-value=0.00066  Score=61.15  Aligned_cols=100  Identities=11%  Similarity=0.028  Sum_probs=68.9

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+-....|..   .+..-            ...+
T Consensus        84 ~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l  146 (258)
T PRK06190         84 PNPSPAWPAMRKPVIGAINGAAVTGGLELALAC--DILIASERARFADTHARVGIL---PGWGL------------SVRL  146 (258)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEeCCCEEECcccccCcC---CCccH------------HHHH
Confidence            356777888899999999999999999999999  479999999886533322221   11100            0111


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-....|+|+||+++||||+|.+..
T Consensus       147 ~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  183 (258)
T PRK06190        147 PQKVG--IGRARRMSLTGDFLDAADALRAGLVTEVVPHD  183 (258)
T ss_pred             HHHhC--HHHHHHHHHhCCccCHHHHHHcCCCeEecCHh
Confidence            22223  33344455557789999999999999998643

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=97.49  E-value=0.00057  Score=61.36  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=66.9

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+.....|..-..--..               .+.
T Consensus        94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~  156 (266)
T PRK09245         94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVKLGLIPGDGGAW---------------LLP  156 (266)
T ss_pred             HHHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccccCcCCCcchhh---------------hHH
Confidence            35567778889999999999999999999999  4799999998876444433211000000               111


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       157 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (266)
T PRK09245        157 RIIG--MARAAEMAFTGDAIDAATALEWGLVSRVVPAD  192 (266)
T ss_pred             HHhh--HHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence            1122  12223344446789999999999999998653

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=97.49  E-value=0.00063  Score=60.79  Aligned_cols=94  Identities=14%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916          115 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHF  193 (246)
Q Consensus       115 ~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya~~T  193 (246)
                      .|..++.||.+.+-|.|.+.|..+++++  +.|++.++++|-+.....|.. +-..-.                .+.+..
T Consensus        87 ~l~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~----------------~l~~~v  148 (255)
T PRK06563         87 VGRRLSKPLVVAVQGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQRGILPFGGATL----------------RFPQAA  148 (255)
T ss_pred             HHhcCCCCEEEEEcCeeecHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHH----------------HHHHHh
Confidence            4677889999999999999999999999  479999999887654443321 111100                011122


Q ss_pred             CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      |.  ..-.+++-....|+++||+++||||+|....
T Consensus       149 G~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  181 (255)
T PRK06563        149 GW--GNAMRYLLTGDEFDAQEALRLGLVQEVVPPG  181 (255)
T ss_pred             hH--HHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence            21  2223444456789999999999999998654

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=97.48  E-value=0.00093  Score=59.64  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..+...+.||.+.+-|.|.+.|..|.+++  +.|++.++++|-+.....|..   .+..-            ...+.
T Consensus        85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~  147 (249)
T PRK07110         85 NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYA--DIVVLSRESVYTANFMKYGFT---PGMGA------------TAILP  147 (249)
T ss_pred             HHHHHHHcCCCCEEEEecCceechHHHHHHhC--CEEEEeCCCEecCchhccCCC---CCchH------------HHHHH
Confidence            56777888899999999999999999999999  479999999875533332221   11100            00112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..  ......+++-...-|+++||+++||||+|.+..
T Consensus       148 ~~~--g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~  183 (249)
T PRK07110        148 EKL--GLALGQEMLLTARYYRGAELKKRGVPFPVLPRA  183 (249)
T ss_pred             HHh--CHHHHHHHHHcCCccCHHHHHHcCCCeEEeChH
Confidence            222  233445566567899999999999999998644

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=97.48  E-value=0.0005  Score=61.40  Aligned_cols=98  Identities=19%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .++..|...+.||...+-|.|.+.|..+.+++  +.|++.++++|.+.....|.. +-..-                ..+
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~ac--D~ria~~~a~f~~pe~~~Gl~p~~g~~----------------~~l  149 (251)
T PRK06023         88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC--DLTFASPRSLFRTPFVDLALVPEAGSS----------------LLA  149 (251)
T ss_pred             HHHHHHHhCCCCEEEEeCCceecHHHHHHHhC--CEEEEeCCCEecCcccccCCCCCchHH----------------HHH
Confidence            46677888899999999999999999999999  489999999987644433331 11100                011


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  .....+++-..+.++++||+++||||+|.+..
T Consensus       150 ~~~~g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  186 (251)
T PRK06023        150 PRLMG--HQRAFALLALGEGFSAEAAQEAGLIWKIVDEE  186 (251)
T ss_pred             HHHHh--HHHHHHHHHhCCCCCHHHHHHcCCcceeeCHH
Confidence            11122  22333344446789999999999999998643

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=97.47  E-value=0.00057  Score=61.87  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=67.1

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|..|.++++  -|++.++++|.+-....|..   .+...    .        ..+.
T Consensus       102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~  164 (275)
T PLN02664        102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSVKEVDLAIT---ADLGT----L--------QRLP  164 (275)
T ss_pred             HHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEeccHHHhhCCC---CCccH----H--------HHHH
Confidence            356678888999999999999999999999994  79999999986643333321   11110    0        0011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|  ...-.+++=....|+++||+++||||+|.+.
T Consensus       165 ~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  199 (275)
T PLN02664        165 SIVG--YGNAMELALTGRRFSGSEAKELGLVSRVFGS  199 (275)
T ss_pred             HHhC--HHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence            1122  2223344444678999999999999999864

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=97.47  E-value=0.00067  Score=62.10  Aligned_cols=99  Identities=15%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+.....|..-   +.--    .        ..+.
T Consensus       104 ~~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p---~~g~----~--------~~l~  166 (296)
T PRK08260        104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGRRGIVP---EAAS----S--------WFLP  166 (296)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhhcCcCC---Ccch----h--------hhHH
Confidence            35667888899999999999999999999999  4799999999876554433211   1000    0        0011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....++++||+++||||+|.+..
T Consensus       167 r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~  202 (296)
T PRK08260        167 RLVG--LQTALEWVYSGRVFDAQEALDGGLVRSVHPPD  202 (296)
T ss_pred             HhhC--HHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence            1112  22334455556789999999999999998643

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=97.45  E-value=0.00072  Score=61.37  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .++..|...+.||.+.+-|.|.+.|.-|+++++  .|++.++++|.+-....|.. + -..                 ..
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~-----------------~~  155 (275)
T PRK09120         95 GWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACD--LAIAADEAQFGLSEINWGIPPGGGVS-----------------KA  155 (275)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEechhHHHHHhCC--EEEEeCCcEecCCccccCCCCCcchH-----------------HH
Confidence            356677788899999999999999999999994  79999999887633222221 1 111                 11


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       156 l~~~iG--~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~  193 (275)
T PRK09120        156 MADTVG--HRDALYYIMTGETFTGRKAAEMGLVNESVPLA  193 (275)
T ss_pred             HHHHcC--HHHHHHHHhcCCccCHHHHHHcCCcceecCHH
Confidence            222222  22334444446789999999999999998754

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=97.45  E-value=0.0009  Score=60.37  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|+++++  -|++.++++|-+.....|..   .+...            ...+.
T Consensus       100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~  162 (272)
T PRK06142        100 AAINAVADCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVREVDLGMV---ADVGS------------LQRLP  162 (272)
T ss_pred             HHHHHHHhCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchhhhhCCC---CCchH------------HHHHH
Confidence            456677888999999999999999999999994  79999999875543333321   11100            00111


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|.  ....+++-...-++++||+++||||+|.++
T Consensus       163 ~~~G~--~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~  197 (272)
T PRK06142        163 RIIGD--GHLRELALTGRDIDAAEAEKIGLVNRVYDD  197 (272)
T ss_pred             HHhCH--HHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence            11221  223344444677999999999999999875

>PLN02921 naphthoate synthase

Probab=97.45  E-value=0.001  Score=62.29  Aligned_cols=96  Identities=16%  Similarity=0.232  Sum_probs=68.9

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc--cChHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE--GQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~--G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ++..|..++.||.+.+-|.|.+.|..|.+++  +-|++.++++|.+..+..|..  |-..-                 .+
T Consensus       153 l~~~l~~~~kPvIAaVnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~Gl~p~~gg~~-----------------~L  213 (327)
T PLN02921        153 LQIQIRRLPKPVIAMVAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVGSFDAGYGSS-----------------IM  213 (327)
T ss_pred             HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCccHHH-----------------HH
Confidence            4567778889999999999999999999999  479999999987766654432  11110                 01


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-....|+|+||+++||||+|....
T Consensus       214 ~rliG--~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~  250 (327)
T PLN02921        214 ARLVG--QKKAREMWFLARFYTASEALKMGLVNTVVPLD  250 (327)
T ss_pred             HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence            11112  22334455557889999999999999998653

>PLN02888 enoyl-CoA hydratase

Probab=97.44  E-value=0.00075  Score=60.92  Aligned_cols=99  Identities=12%  Similarity=0.055  Sum_probs=66.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|..|++++  +.|++.++++|.+-....|..   .+...            ...+.
T Consensus        90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~  152 (265)
T PLN02888         90 DPVAQMERCRKPIIGAINGFAITAGFEIALAC--DILVASRGAKFIDTHAKFGIF---PSWGL------------SQKLS  152 (265)
T ss_pred             HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEecCCCEecCccccccCC---CCccH------------hhHHH
Confidence            35566778889999999999999999999999  479999999886533332221   11000            00112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       153 ~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  188 (265)
T PLN02888        153 RIIG--ANRAREVSLTAMPLTAETAERWGLVNHVVEES  188 (265)
T ss_pred             HHhC--HHHHHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence            2222  22233344446789999999999999998654

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=97.43  E-value=0.00077  Score=60.30  Aligned_cols=99  Identities=11%  Similarity=0.113  Sum_probs=67.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-+.++++  .|++.++++|-+-....|..   .+..-            ...+.
T Consensus        85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~  147 (257)
T PRK05862         85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMCD--IIIAADTAKFGQPEIKLGVL---PGMGG------------SQRLT  147 (257)
T ss_pred             HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCC--EEEEeCCCEEeCchhccCcC---CCccH------------HHHHH
Confidence            456678888999999999999999999999994  79999998876533332221   11100            00122


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       148 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  183 (257)
T PRK05862        148 RAVG--KAKAMDLCLTGRMMDAAEAERAGLVSRVVPAD  183 (257)
T ss_pred             HHhC--HHHHHHHHHhCCccCHHHHHHcCCCCEeeCHh
Confidence            2222  22233444456789999999999999998753

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=97.41  E-value=0.0012  Score=59.71  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cC-hHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~-a~di~i~a~el~~~~~~i~~i  188 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+-.+..|.. +- ...                 .
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~~~~-----------------~  158 (273)
T PRK07396         98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGYGAS-----------------Y  158 (273)
T ss_pred             HHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEeeCCcEEecccccccccCCchHHH-----------------H
Confidence            35667778889999999999999999999999  479999999987644443321 11 111                 0


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  .....+++-....|+|+||+++||||+|.+..
T Consensus       159 l~~~vG--~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~  196 (273)
T PRK07396        159 LARIVG--QKKAREIWFLCRQYDAQEALDMGLVNTVVPLA  196 (273)
T ss_pred             HHHHhh--HHHHHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence            111122  22333444456789999999999999998643

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=97.41  E-value=0.00075  Score=60.40  Aligned_cols=98  Identities=18%  Similarity=0.188  Sum_probs=67.7

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..   .+..-            ...+.
T Consensus        88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~  150 (260)
T PRK05809         88 KVFRKLENLDKPVIAAINGFALGGGCELSMAC--DIRIASEKAKFGQPEVGLGIT---PGFGG------------TQRLA  150 (260)
T ss_pred             HHHHHHHcCCCCEEEEEcCeeecHHHHHHHhC--CEEEeeCCCEEeCcccccCCC---CCccH------------HHHHH
Confidence            46677888899999999999999999999999  479999999887644433322   11110            00112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|  ...-.+++-.+..++++||+++||||+|.+.
T Consensus       151 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  185 (260)
T PRK05809        151 RIVG--PGKAKELIYTGDMINAEEALRIGLVNKVVEP  185 (260)
T ss_pred             HHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh
Confidence            2222  1233344444678999999999999999864

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=97.41  E-value=0.00096  Score=59.88  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+-....|.. +-.. .               ..+
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l  150 (261)
T PRK08138         89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHA--DIIVAGESASFGQPEIKVGLMPGAGG-T---------------QRL  150 (261)
T ss_pred             HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhC--CEEEecCCCEeeCcccccccCCCCcH-H---------------HHH
Confidence            45667778889999999999999999999999  479999998876533333321 1100 0               012


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       151 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (261)
T PRK08138        151 VRAVG--KFKAMRMALTGCMVPAPEALAIGLVSEVVEDE  187 (261)
T ss_pred             HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence            22223  22333444456789999999999999998654

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=97.41  E-value=0.00067  Score=60.66  Aligned_cols=98  Identities=15%  Similarity=0.045  Sum_probs=66.0

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      ++..|..++.||.+.+-|.|.+.|..|++++  +.|++.++++|.+-....|..   .+..-.            ..+.+
T Consensus        85 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~lG~~---p~~g~~------------~~l~~  147 (256)
T TIGR02280        85 LVRRLRALPLPVVCAVNGVAAGAGANLALAC--DIVLAAESARFIQAFAKIGLI---PDSGGT------------WSLPR  147 (256)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeChhhhcCCC---CCccHH------------HHHHH
Confidence            4567788899999999999999999999999  479999999886533332221   110000            00111


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..|  ...-.+++-....|+++||+++||||+|.+..
T Consensus       148 ~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  182 (256)
T TIGR02280       148 LVG--RARAMGLAMLGEKLDARTAASWGLIWQVVDDA  182 (256)
T ss_pred             HhC--HHHHHHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence            112  22223344456789999999999999998654

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=97.40  E-value=0.0013  Score=58.97  Aligned_cols=94  Identities=18%  Similarity=0.183  Sum_probs=64.9

Q ss_pred             hcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025916          116 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGK  195 (246)
Q Consensus       116 m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~  195 (246)
                      +..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+.....|..-..--.               ..+.+..| 
T Consensus        90 ~~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~~~vg-  151 (259)
T PRK06494         90 RFDLDKPIIAAVNGVAMGGGFELALAC--DLIVAAENATFALPEPRVGLAALAGGL---------------HRLPRQIG-  151 (259)
T ss_pred             HhcCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCchHH---------------HHHHHHcC-
Confidence            345678999999999999999999999  479999999887654443321110000               01222233 


Q ss_pred             CHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          196 TPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       196 ~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       ...-.+++-....++++||+++||||+|....
T Consensus       152 -~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~  183 (259)
T PRK06494        152 -LKRAMGMILTGRRVTAREGLELGFVNEVVPAG  183 (259)
T ss_pred             -HHHHHHHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence             33334455557889999999999999998753

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=97.39  E-value=0.00088  Score=59.35  Aligned_cols=138  Identities=13%  Similarity=0.110  Sum_probs=96.1

Q ss_pred             hHHHHHHhhCC-CCCEE-EEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEec
Q 025916           73 RSPVITMYEDV-EKPIY-LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL  150 (246)
Q Consensus        73 ~~iiaqL~ed~-~k~I~-LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~  150 (246)
                      ....+.|-+++ .--+. +-+||||        |+|.+++++-..++..+-++..-...+|+|.-.++|++|.  .|++-
T Consensus        91 ~sal~~lir~~G~y~~t~v~lnSpG--------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv--rRvve  160 (245)
T COG3904          91 ASALGRLIRKAGLYIATGVTLNSPG--------GSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV--RRVVE  160 (245)
T ss_pred             HHHHHHHHhccCceeEEEEEecCCC--------CcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce--eeeec
Confidence            33444443333 33344 6799999        9999999999999999888777778899999899999984  79999


Q ss_pred             cCceeeeecCCcCccc-ChHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHh----cCCCccCHHHHHHcCCceE
Q 025916          151 PSSTIMIKQPIGRIEG-QATDVEIARKEM-KNVKAELVKLYAKHFGKTPEQIEADI----RRPKYFSPSEAVEYGIIDK  223 (246)
Q Consensus       151 Pns~iMiHqp~~~~~G-~a~di~i~a~el-~~~~~~i~~iya~~Tg~~~e~I~~~~----~rd~~~sa~EAleyGLID~  223 (246)
                      |.+.+-+||+.....- .....+  ++.. .+...+ ...|-...|.+..-++...    ++=++++.+|-.+|.|+.+
T Consensus       161 ~~ayiGVHq~~~~g~~~r~~~~~--a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~~~~L~t~  236 (245)
T COG3904         161 DFAYIGVHQITTTGRRERIVNGK--AKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMTAMKLVTS  236 (245)
T ss_pred             ccceeeeeeccccCCccccCcHh--hhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHhhhccccc
Confidence            9999999999854322 111111  1111 111222 2346677788877776655    3458899999999988753

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=97.39  E-value=0.0011  Score=59.12  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=65.9

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||...+-|.|.+.|.-+.++++  -|++.++++|.+-....|..   .+..            ....+
T Consensus        76 ~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~---p~~g------------~~~~l  138 (243)
T PRK07854         76 IEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACD--LRVVAPEAYFQFPVAKYGIA---LDNW------------TIRRL  138 (243)
T ss_pred             HHHHHHHHhCCCCEEEEecCcccccHHHHHHhCC--EEEEcCCCEEeccccccccC---CCcc------------HHHHH
Confidence            3466677788899999999999999999999994  79999999876422222221   1100            00112


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEc
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL  225 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii  225 (246)
                      .+..|  ...-.+++-....|+++||+++||||+|.
T Consensus       139 ~~~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~  172 (243)
T PRK07854        139 SSLVG--GGRARAMLLGAEKLTAEQALATGMANRIG  172 (243)
T ss_pred             HHHhC--HHHHHHHHHcCCCcCHHHHHHCCCccccc
Confidence            22223  22333445457899999999999999994

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=97.39  E-value=0.001  Score=59.66  Aligned_cols=97  Identities=12%  Similarity=0.156  Sum_probs=67.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-|+++++  -|++.++++|.+-....|...   +... .            .+.
T Consensus        90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p---~~g~-~------------~l~  151 (262)
T PRK05995         90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACD--IAVAADHAVFCLSEVRLGLIP---ATIS-P------------YVI  151 (262)
T ss_pred             HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCC--EEEeeCCCEEeCcccccccCc---cchH-H------------HHH
Confidence            456667788899999999999999999999994  799999998866444333321   1100 0            011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|  ...-.+++-...-++++||+++||||+|...
T Consensus       152 ~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  186 (262)
T PRK05995        152 RAMG--ERAARRYFLTAERFDAAEALRLGLVHEVVPA  186 (262)
T ss_pred             HHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCH
Confidence            2222  3333444545677999999999999999854

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=97.38  E-value=0.0009  Score=61.20  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|.++++  -|++.++++|.+-....|..|-    ..    + ..        .
T Consensus       109 ~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~pe~~lGl~~~----~~----~-~l--------~  169 (288)
T PRK08290        109 GMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSDPVVRMGIPGV----EY----F-AH--------P  169 (288)
T ss_pred             HHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecCcccccCcCcc----hH----H-HH--------H
Confidence            345567788999999999999999999999994  7999999988653333344221    00    0 00        0


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ...|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       170 ~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  205 (288)
T PRK08290        170 WELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPRD  205 (288)
T ss_pred             HHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence            1112  23334444456889999999999999998653

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=97.37  E-value=0.001  Score=59.84  Aligned_cols=100  Identities=15%  Similarity=0.249  Sum_probs=67.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-+++++  +.|++.++++|-+-...  ..|-..+...    .        ..+.
T Consensus        93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~--~~G~~p~~g~----~--------~~l~  156 (262)
T PRK06144         93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAAC--DLRIATPSARFGFPIAR--TLGNCLSMSN----L--------ARLV  156 (262)
T ss_pred             HHHHHHHhCCCCEEEEECCeeeehHHHHHHhC--CEEEecCCCEeechhHH--hccCCCCccH----H--------HHHH
Confidence            35566777889999999999999999999999  47999999988542221  0121111000    0        0122


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  .....+++-....|+++||+++||||+|.+..
T Consensus       157 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (262)
T PRK06144        157 ALLG--AARVKDMLFTARLLEAEEALAAGLVNEVVEDA  192 (262)
T ss_pred             HHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCHH
Confidence            2333  23344555557899999999999999998753

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=97.37  E-value=0.0012  Score=59.24  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=66.8

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|+++++  -|++.++++|-+-.+..|.. + -..-                 .
T Consensus        85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~~~~~~~~-----------------~  145 (256)
T TIGR03210        85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTICD--LTIASEKAQFGQVGPKVGSVDPGYGTA-----------------L  145 (256)
T ss_pred             HHHHHHHhCCCCEEEEECCEEehhhHHHHHhCC--EEEEeCCCEEecccccccccCCccHHH-----------------H
Confidence            356778888999999999999999999999994  79999999887644433321 1 0110                 1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|.  ..-.+++-....|+|+||+++||||+|....
T Consensus       146 l~~~vG~--~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~  183 (256)
T TIGR03210       146 LARVVGE--KKAREIWYLCRRYTAQEALAMGLVNAVVPHD  183 (256)
T ss_pred             HHHHhCH--HHHHHHHHhCCCcCHHHHHHcCCceeeeCHH
Confidence            1222221  2222333336789999999999999998643

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=97.36  E-value=0.00098  Score=59.86  Aligned_cols=97  Identities=13%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      +++.|..++.||.+.+-|.|.+.|.-|+++++  .|++.++++|-+-....|..   .+.--  .           .+..
T Consensus        92 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl~---p~~g~--~-----------~~~~  153 (262)
T PRK07468         92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVCD--VAIAVSGARFGLTETRLGLI---PATIS--P-----------YVVA  153 (262)
T ss_pred             HHHHHHcCCCCEEEEECCEEEhHHHHHHHhCC--EEEEeCCCEEeCchhccCCC---cccch--h-----------hHHh
Confidence            67788889999999999999999999999994  79999999876543333321   11000  0           0111


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.  ......+++-...-++++||+++||||+|.+..
T Consensus       154 ~v--G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~  188 (262)
T PRK07468        154 RM--GEANARRVFMSARLFDAEEAVRLGLLSRVVPAE  188 (262)
T ss_pred             hc--cHHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence            22  223344555557899999999999999998643

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=97.35  E-value=0.0013  Score=59.00  Aligned_cols=97  Identities=7%  Similarity=0.047  Sum_probs=67.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|..|+++++  .|++.++++|-+.....|..   .+..  .           ..+.
T Consensus        87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~---p~~~--~-----------~~l~  148 (255)
T PRK07112         87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFGLI---PACV--L-----------PFLI  148 (255)
T ss_pred             HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhccC---cchh--h-----------HHHH
Confidence            356667778899999999999999999999994  79999999986644433332   1110  0           0112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ...|  .....+++-...-|+++||+++||||+|...
T Consensus       149 ~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  183 (255)
T PRK07112        149 RRIG--TQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN  183 (255)
T ss_pred             HHhC--HHHHHHHHHhCCcccHHHHHHcCCCceecCc
Confidence            2222  2333444545678999999999999999864

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=97.35  E-value=0.0014  Score=58.80  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.++++  .|++.++++|.+-....|.. + -....                 
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~p~~~~~~~-----------------  148 (259)
T TIGR01929        88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCD--LTIAAENARFGQTGPKVGSFDGGYGSSY-----------------  148 (259)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCC--EEEecCCCEecCcccccccCCCccHHHH-----------------
Confidence            456677888899999999999999999999994  79999999987765554431 1 11110                 


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-....++++||+++||||+|.+..
T Consensus       149 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  186 (259)
T TIGR01929       149 LARIVG--QKKAREIWFLCRQYDAEQALDMGLVNTVVPLA  186 (259)
T ss_pred             HHHHhH--HHHHHHHHHhCCccCHHHHHHcCCcccccCHH
Confidence            111111  11223344446789999999999999998643

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=97.35  E-value=0.0011  Score=59.43  Aligned_cols=97  Identities=15%  Similarity=0.071  Sum_probs=66.6

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      ++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|.. +-..- .               .+.
T Consensus        91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~p~~g~~-~---------------~l~  152 (262)
T PRK08140         91 LVRRLRALPLPVIAAVNGVAAGAGANLALAC--DIVLAARSASFIQAFVKIGLVPDSGGT-W---------------FLP  152 (262)
T ss_pred             HHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEEeccccccCCCCCccHH-H---------------HHH
Confidence            5667778899999999999999999999999  579999999986533322221 11000 0               011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  .....+++-...-|+++||+++||||+|.+..
T Consensus       153 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  188 (262)
T PRK08140        153 RLVG--MARALGLALLGEKLSAEQAEQWGLIWRVVDDA  188 (262)
T ss_pred             HHhC--HHHHHHHHHcCCCcCHHHHHHcCCccEeeChH
Confidence            1112  22334445456789999999999999998654

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=97.34  E-value=0.0011  Score=60.24  Aligned_cols=99  Identities=13%  Similarity=0.081  Sum_probs=69.1

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      ++..|...+.||.+.+-|.|.+.|..|++++  +.|++.++++|-+-....|..  ..+...            ...+.+
T Consensus        99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lGl~--~p~~~~------------~~~l~~  162 (278)
T PLN03214         99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEVALGIP--VPKFWA------------RLFMGR  162 (278)
T ss_pred             HHHHHHcCCCCEEEEEcCcccchHHHHHHhC--CEEEecCCCEecCcHHHhCCC--CCChhH------------HHHHHH
Confidence            4566778889999999999999999999999  479999999886633333321  011100            012333


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..|  ...-.+++-...-|+++||+++||||+|....
T Consensus       163 ~~G--~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~  197 (278)
T PLN03214        163 VID--RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAA  197 (278)
T ss_pred             hcC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence            333  34444555567889999999999999998653

>PLN02600 enoyl-CoA hydratase

Probab=97.33  E-value=0.0011  Score=59.26  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+-....|..   .+..-    .        ..+.
T Consensus        79 ~~~~~l~~~~kPvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~  141 (251)
T PLN02600         79 STFSSLEALSIPTIAVVEGAALGGGLELALSC--DLRICGEEAVFGLPETGLAII---PGAGG----T--------QRLP  141 (251)
T ss_pred             HHHHHHHhCCCCEEEEecCeecchhHHHHHhC--CEEEeeCCCEEeCcccccCcC---CCchH----H--------HHHH
Confidence            34566777889999999999999999999999  479999999887632222221   11000    0        0011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..  ....-.+++-....|+++||+++||||+|.+..
T Consensus       142 ~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  177 (251)
T PLN02600        142 RLV--GRSRAKELIFTGRRIGAREAASMGLVNYCVPAG  177 (251)
T ss_pred             HHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEeeChh
Confidence            111  222233444446789999999999999998654

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=97.31  E-value=0.0012  Score=59.62  Aligned_cols=98  Identities=13%  Similarity=0.097  Sum_probs=64.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|-+-....|.. +...-. .               +
T Consensus        97 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~---------------l  158 (268)
T PRK07327         97 DLVYNVINCDKPIVSAIHGPAVGAGLVAALLA--DISIAAKDARIIDGHTRLGVAAGDHAAI-V---------------W  158 (268)
T ss_pred             HHHHHHHcCCCCEEEEEcCeeeehhhHHHHhC--CEEEecCCCEEeCcccccCCCCCcchhh-H---------------H
Confidence            34555667789999999999999999999999  479999999886533333321 111100 0               0


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ....|  ...-.+++-....|+|+||+++||||+|.+..
T Consensus       159 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  195 (268)
T PRK07327        159 PLLCG--MAKAKYYLLLCEPVSGEEAERIGLVSLAVDDD  195 (268)
T ss_pred             HHHhC--HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence            11111  12222344446789999999999999998643

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=97.27  E-value=0.0011  Score=59.93  Aligned_cols=100  Identities=15%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|...  .+...            ...+.
T Consensus       100 ~~~~~l~~~~kPvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p--~~~g~------------~~~l~  163 (276)
T PRK05864        100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRAAGINNGLTA--SELGL------------SYLLP  163 (276)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecCcccccCCCC--CCcch------------heehH
Confidence            35567778899999999999999999999999  4799999988865333333210  01000            00122


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  .....+++-....++++||+++||||+|.+..
T Consensus       164 ~~vG--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~  199 (276)
T PRK05864        164 RAIG--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDE  199 (276)
T ss_pred             hhhC--HHHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence            2233  23334444345678999999999999998653

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=97.25  E-value=0.0013  Score=58.84  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=67.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|.++++  -|++.++++|-+-....|...   ..-  .           ..+.
T Consensus        80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p---~~~--~-----------~~l~  141 (251)
T TIGR03189        80 KLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGN--LMFAAPDAKLGQPEIVLGVFA---PAA--S-----------CLLP  141 (251)
T ss_pred             HHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCC--EEEEcCCCEEeCchhhcCCCC---Cch--H-----------HHHH
Confidence            355667788899999999999999999999994  799999988765333333211   110  0           0122


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|  .....+++-...-|+++||+++||||+|.+.
T Consensus       142 ~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~  176 (251)
T TIGR03189       142 ERMG--RVAAEDLLYSGRSIDGAEGARIGLANAVAED  176 (251)
T ss_pred             HHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence            2333  3334455555677999999999999999853

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=97.24  E-value=0.00093  Score=59.94  Aligned_cols=92  Identities=18%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc---cChHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~---G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+.....|..   |-..-                  
T Consensus        90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------  149 (260)
T PRK07659         90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTA--DYVIADISAKLAMNFIGIGLIPDGGGHFF------------------  149 (260)
T ss_pred             HHHHHHhCCCCEEEEecCceecHHHHHHHhC--CEEEEcCCCEEcCchhhcCCCCCCchhhh------------------
Confidence            4455667789999999999999999999999  479999999886544433321   11111                  


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEc
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL  225 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii  225 (246)
                      +.+..  ......+++-....|+++||+++||||+|.
T Consensus       150 L~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  184 (260)
T PRK07659        150 LQKRV--GENKAKQIIWEGKKLSATEALDLGLIDEVI  184 (260)
T ss_pred             HHHhc--CHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence            11222  334445555567889999999999999998

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=97.23  E-value=0.0019  Score=57.67  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=69.3

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc-ccC-hHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQ-ATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~-~G~-a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+.....|. -|. .+..                 +
T Consensus        90 ~~~~l~~~~kPvIAav~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iGl~Pg~g~~~~-----------------l  150 (257)
T COG1024          90 LLRALADLPKPVIAAVNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLGLLPGDGGTQR-----------------L  150 (257)
T ss_pred             HHHHHHhCCCCEEEEEcceEeechhhhhhcC--CeEEecCCcEecCcccccccCCCCcHHHH-----------------H
Confidence            6778888899999999999999999999999  47999999999876665443 221 1111                 1


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++--+..++++||+++||||++....
T Consensus       151 ~r~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  187 (257)
T COG1024         151 PRLLG--RGRAKELLLTGEPISAAEALELGLVDEVVPDA  187 (257)
T ss_pred             HHhcC--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCH
Confidence            11111  11222244447889999999999999988754

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=97.23  E-value=0.0015  Score=58.73  Aligned_cols=93  Identities=15%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             hcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025916          116 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFG  194 (246)
Q Consensus       116 m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iya~~Tg  194 (246)
                      +..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+.....|.. +-..-                ..+.+.. 
T Consensus        96 ~~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~----------------~~l~r~v-  156 (263)
T PRK07799         96 GRRLTKPLIAAVEGPAIAGGTEILQGT--DIRVAGESAKFGISEAKWSLFPMGGSA----------------VRLVRQI-  156 (263)
T ss_pred             HhcCCCCEEEEECCeEeccHHHHHHhC--CEEEecCCCEecCcccccCcCCCccHH----------------HHHHHHh-
Confidence            456788999999999999999999999  479999999876543333321 11000                0111122 


Q ss_pred             CCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          195 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       195 ~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       ......+++-....|+++||+++||||+|.+..
T Consensus       157 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  189 (263)
T PRK07799        157 -PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG  189 (263)
T ss_pred             -CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcc
Confidence             233344455557889999999999999998754

>PRK08788 enoyl-CoA hydratase; Validated

Probab=97.21  E-value=0.0032  Score=57.88  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=62.6

Q ss_pred             ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916          118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP  197 (246)
Q Consensus       118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~  197 (246)
                      ..+.||.+.+-|.|.+.|.-|.++++  .|++.++++|-+-....|.   ..+..-            ...+.+..|  .
T Consensus       119 ~~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pev~lGl---~p~~g~------------~~~l~~~vG--~  179 (287)
T PRK08788        119 GAGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGFPEILFNL---FPGMGA------------YSFLARRVG--P  179 (287)
T ss_pred             CCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeCchhhhCc---CCCchH------------HHHHHHHhh--H
Confidence            46789999999999999999999994  7999999877542222222   111110            111223333  2


Q ss_pred             HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..-.+++-.+..|+++||+++||||+|.+..
T Consensus       180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~~  210 (287)
T PRK08788        180 KLAEELILSGKLYTAEELHDMGLVDVLVEDG  210 (287)
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence            3334555567789999999999999998654

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=97.17  E-value=0.0018  Score=59.78  Aligned_cols=124  Identities=24%  Similarity=0.340  Sum_probs=82.0

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHH---HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCce
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYD---VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST  154 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd---~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~  154 (246)
                      .+.=.-||..+|++||.-.  .-|.-|.   +-+|.-   .|-.++.||.++++|...|.|++-++-|+  +.+++.||+
T Consensus       146 AekF~lPiitfIDT~GAypG~~AEErGQ---~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~  220 (317)
T COG0825         146 AEKFGLPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENST  220 (317)
T ss_pred             HHHhCCCEEEEecCCCCCCCcchhhccc---HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhce
Confidence            3444689999999999321  2222232   233333   45566899999999999999999999994  678999999


Q ss_pred             eeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCCCCc
Q 025916          155 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDH  234 (246)
Q Consensus       155 iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~~~~  234 (246)
                      +..=.|.+-.    +=+   ++.-.               +.. +..+.    .-+|+++-+++||||.|+..+.....+
T Consensus       221 ySVisPEG~A----sIL---WkD~~---------------ka~-eAAe~----mkita~dLk~lgiID~II~Ep~ggAhr  273 (317)
T COG0825         221 YSVISPEGCA----SIL---WKDAS---------------KAK-EAAEA----MKITAHDLKELGIIDGIIPEPLGGAHR  273 (317)
T ss_pred             eeecChhhhh----hhh---hcChh---------------hhH-HHHHH----cCCCHHHHHhCCCcceeccCCCCcccc
Confidence            9888887532    111   11100               111 11111    236788999999999999888766544


Q ss_pred             c
Q 025916          235 G  235 (246)
Q Consensus       235 ~  235 (246)
                      +
T Consensus       274 ~  274 (317)
T COG0825         274 D  274 (317)
T ss_pred             C
Confidence            4

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=97.17  E-value=0.002  Score=57.73  Aligned_cols=92  Identities=13%  Similarity=0.013  Sum_probs=63.0

Q ss_pred             ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916          118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP  197 (246)
Q Consensus       118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~  197 (246)
                      .++.||.+.+-|.|.+.|.-+++++  +.|++.++++|-+-....|..   .+..-    .        ..+.+..|  .
T Consensus        91 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~iG--~  151 (254)
T PRK08259         91 RLSKPVIAAVSGYAVAGGLELALWC--DLRVAEEDAVFGVFCRRWGVP---LIDGG----T--------VRLPRLIG--H  151 (254)
T ss_pred             cCCCCEEEEECCEEEhHHHHHHHhC--CEEEecCCCEecCcccccCCC---CCccH----H--------HHHHHHhC--H
Confidence            4578999999999999999999999  589999999875533222221   11000    0        01122223  3


Q ss_pred             HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..-.+++-....|+++||+++||||+|....
T Consensus       152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~  182 (254)
T PRK08259        152 SRAMDLILTGRPVDADEALAIGLANRVVPKG  182 (254)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCCCEeeChh
Confidence            3444555567889999999999999998754

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=97.16  E-value=0.0023  Score=57.10  Aligned_cols=94  Identities=13%  Similarity=0.087  Sum_probs=62.2

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-+.+++  +-|++.++++|.+.....|..   .+....            ..+.
T Consensus        80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~~~~~~Gl~---p~~g~~------------~~l~  142 (248)
T PRK06072         80 PIIREIRFSDKIYISAINGVTAGACIGIALST--DFKFASRDVKFVTAFQRLGLA---SDTGVA------------YFLL  142 (248)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEecchhhcCcC---CCchHH------------HHHH
Confidence            35566777889999999999999999999998  479999999987654443332   111100            0011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEE
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV  224 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~I  224 (246)
                      +..|  . ...+++-....|+|+||+++||||++
T Consensus       143 ~~~g--~-~a~~lll~g~~~~a~eA~~~Glv~~~  173 (248)
T PRK06072        143 KLTG--Q-RFYEILVLGGEFTAEEAERWGLLKIS  173 (248)
T ss_pred             HHhh--H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence            1112  1 12223333566899999999999964

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=97.16  E-value=0.0021  Score=59.11  Aligned_cols=94  Identities=12%  Similarity=0.017  Sum_probs=68.3

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC-cCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI-GRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~-~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+..|..++.||.+.+-|.|.+.|.-|.++|+  -|++.++++|-+-... +|...  ...                 +.
T Consensus       104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~~l~G~~~--~~~-----------------~~  162 (298)
T PRK12478        104 KFMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYSRMWGAYL--TGM-----------------WL  162 (298)
T ss_pred             HHHHHHhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEeccccccccCCc--hhH-----------------HH
Confidence            45567788899999999999999999999994  7999999998764444 23221  000                 00


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.  ....-.+++-....|+|+||+++||||+|....
T Consensus       163 ~~v--G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~  198 (298)
T PRK12478        163 YRL--SLAKVKWHSLTGRPLTGVQAAEAELINEAVPFE  198 (298)
T ss_pred             HHh--hHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence            112  234445566567899999999999999998653

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=97.16  E-value=0.0036  Score=59.51  Aligned_cols=99  Identities=20%  Similarity=0.095  Sum_probs=68.2

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc--cChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE--GQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~--G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.++|+  .|++.++++|-+-.+..|..  +-.+..                 
T Consensus       115 ~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCD--lrIAse~A~Fg~PE~rlGl~P~~Ggt~r-----------------  175 (360)
T TIGR03200       115 DMVSAILGCDKPVICRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQAGPKHGSAPIGGATDF-----------------  175 (360)
T ss_pred             HHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCC--EEEEcCCCEEeCchhccCCCCCccHHHH-----------------
Confidence            566778888999999999999999999999994  79999999887644443321  111111                 


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS  230 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~  230 (246)
                      +....|  ...-..++-....|+|+||+++||||+|.+..+.
T Consensus       176 LprlvG--~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~  215 (360)
T TIGR03200       176 LPLMIG--CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV  215 (360)
T ss_pred             HHHhhC--HHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence            111111  1222222323568999999999999999876553

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=97.11  E-value=0.0026  Score=56.87  Aligned_cols=92  Identities=10%  Similarity=-0.001  Sum_probs=62.8

Q ss_pred             ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916          118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP  197 (246)
Q Consensus       118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~  197 (246)
                      ..+.||.+.+-|.|.+.|.-|+++++  .|++.++++|-+-....|..   .+..-            ...+.+..|  .
T Consensus        89 ~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~vg--~  149 (254)
T PRK08252         89 PPRKPLIAAVEGYALAGGFELALACD--LIVAARDAKFGLPEVKRGLV---AAGGG------------LLRLPRRIP--Y  149 (254)
T ss_pred             cCCCCEEEEECCEEehHHHHHHHhCC--EEEEeCCCEEeCchhhcCCC---CCchH------------HHHHHHHcC--H
Confidence            46789999999999999999999994  79999999885533322221   11100            001222223  3


Q ss_pred             HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..-.+++-...-|+++||+++||||+|....
T Consensus       150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  180 (254)
T PRK08252        150 HIAMELALTGDMLTAERAHELGLVNRLTEPG  180 (254)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCcceecCcc
Confidence            3344555557789999999999999998654

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=97.05  E-value=0.004  Score=56.15  Aligned_cols=97  Identities=14%  Similarity=0.155  Sum_probs=65.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-++++++  -|++.++++|.+-....|..   .+...  .           .+.
T Consensus        92 ~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gi~---p~~~~--~-----------~l~  153 (265)
T PRK05674         92 ELMYNLYRLKIPTLAVVQGAAFGGALGLISCCD--MAIGADDAQFCLSEVRIGLA---PAVIS--P-----------FVV  153 (265)
T ss_pred             HHHHHHHcCCCCEEEEEcCEEEechhhHhhhcC--EEEEeCCCEEeCcccccCCC---cchhH--H-----------HHH
Confidence            355567777899999999999999999999994  79999999887633222221   12110  0           011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|.  ..-.+++-...-|+++||+++||||+|.+.
T Consensus       154 ~~vG~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  188 (265)
T PRK05674        154 KAIGE--RAARRYALTAERFDGRRARELGLLAESYPA  188 (265)
T ss_pred             HHhCH--HHHHHHHHhCcccCHHHHHHCCCcceecCH
Confidence            12222  233334434667999999999999999864

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=96.99  E-value=0.0016  Score=58.16  Aligned_cols=93  Identities=20%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .+..|...+.||.+.+-|.|.+.|.-+.+++  +.|++.++++|.+.....|.. + -..-                 .+
T Consensus        87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~~-----------------~l  147 (249)
T PRK05870         87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAA--DVRIAGPKALFDARFQKLGLHPGGGATW-----------------ML  147 (249)
T ss_pred             HHHHHHhCCCCEEEEECCEeEchhHHHHHhC--CEEEEcCCCEEeCcccccCcCCCCccee-----------------eH
Confidence            4556777889999999999999999999999  479999999987554433321 1 0100                 01


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEc
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL  225 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii  225 (246)
                      .+..  ......+++-.+..++++||+++||||+|.
T Consensus       148 ~~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv  181 (249)
T PRK05870        148 QRAV--GPQVARAALLFGMRFDAEAAVRHGLALMVA  181 (249)
T ss_pred             Hhhh--CHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence            1221  223334444446789999999999999998

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=96.99  E-value=0.0048  Score=56.65  Aligned_cols=95  Identities=14%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-|+++++  -|++.++++|-+  |.....|-+.. .               .+.
T Consensus       118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~--pe~~~gg~~~~-~---------------~~~  177 (302)
T PRK08272        118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGY--PPTRVWGVPAT-G---------------MWA  177 (302)
T ss_pred             HHHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecC--cchhcccCChH-H---------------HHH
Confidence            356677788999999999999999999999994  799999998743  33222222111 0               011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ...|  ...-.+++-....|+++||+++||||+|.+.
T Consensus       178 ~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~  212 (302)
T PRK08272        178 YRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP  212 (302)
T ss_pred             HHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence            1222  3344455556788999999999999999864

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=96.98  E-value=0.008  Score=53.52  Aligned_cols=97  Identities=15%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEecc-CceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALP-SSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~P-ns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      ++..|..++.||.+.+-|.|.+.|..|+++++  .|++.+ .++|.+-....|..  ..+..             ...+.
T Consensus        86 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~--~p~~~-------------~~~l~  148 (239)
T PLN02267         86 LVADLISLPMPTIAAVTGHASAAGFILALSHD--YVLMRKDRGVLYMSEVDIGLP--LPDYF-------------MALLR  148 (239)
T ss_pred             HHHHHhcCCCCEEEEECCcchHHHHHHHHHCC--EEEecCCCCeEeccccccCCC--CChHH-------------HHHHH
Confidence            55667788899999999999999999999984  799985 45665433333321  01110             11122


Q ss_pred             HHhCCCHHHH-HHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQI-EADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I-~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ...|.+  .- .+++-....|+++||+++||||+|...
T Consensus       149 ~~vG~~--~a~~~llltG~~~~a~eA~~~Glv~~vv~~  184 (239)
T PLN02267        149 AKIGSP--AARRDVLLRAAKLTAEEAVEMGIVDSAHDS  184 (239)
T ss_pred             HHcChH--HHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence            333322  22 244555788999999999999999864

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.96  E-value=0.0014  Score=64.81  Aligned_cols=133  Identities=20%  Similarity=0.304  Sum_probs=82.0

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc--cCCcEEeccCcee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG--AKGNRAALPSSTI  155 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG--~kgkR~a~Pns~i  155 (246)
                      .+...-||...+||||...  .-|.-|-+..+-.+++.+.....|..++++|.++|.|.+.+++.  ..+..++.|++++
T Consensus       346 a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~  425 (512)
T TIGR01117       346 CDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEI  425 (512)
T ss_pred             HHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeE
Confidence            3445789999999999531  11212456667777778877889999999999999866555431  1256888899988


Q ss_pred             eeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          156 MIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       156 MiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+-.|.+..     .+. +.+++.+..+.     .+   .-.+++.+..  +.+.++..+.+.|+||.|+++.
T Consensus       426 ~v~~pe~a~-----~i~-~~~~l~~~~~~-----~~---~~~~~~~~~~--~~~~~~~~~a~~g~vD~VI~P~  482 (512)
T TIGR01117       426 AVMGPAGAA-----NII-FRKDIKEAKDP-----AA---TRKQKIAEYR--EEFANPYKAAARGYVDDVIEPK  482 (512)
T ss_pred             eecCHHHHH-----HHH-hhhhcccccCH-----HH---HHHHHHHHHH--HhhcCHHHHHhcCCCCeeEChH
Confidence            776665421     110 01111100000     00   0011222222  2366899999999999999876

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=96.96  E-value=0.0063  Score=55.93  Aligned_cols=99  Identities=19%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc---ccChHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~---~G~a~di~i~a~el~~~~~~i~  186 (246)
                      +.-++.+..++.||...+-|.|.+.|.-|.+.|+  =|++.|+|.|+.-++..|.   .|-..-+.              
T Consensus       117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~rl~--------------  180 (290)
T KOG1680|consen  117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQRLP--------------  180 (290)
T ss_pred             cchhhhhhhcccceeEeeeceeeccchhhhhhcc--eEeccCCCeecccccccCCccCCCchhhHH--------------
Confidence            5567778889999999999999999999999995  6999999999988776542   22222111              


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS  230 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~  230 (246)
                          ...|+  ..-.+.+-..+.++++||++.|||++|....+.
T Consensus       181 ----r~vG~--s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~  218 (290)
T KOG1680|consen  181 ----RIVGK--SRALEMILTGRRLGAQEAKKIGLVNKVVPSGDA  218 (290)
T ss_pred             ----HHhCh--HHHHHHHHhcCcccHHHHHhCCceeEeecchhH
Confidence                12222  233445566889999999999999999987653

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.92  E-value=0.0012  Score=66.15  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=84.7

Q ss_pred             hCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc--cCCcEEeccCceee
Q 025916           81 EDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG--AKGNRAALPSSTIM  156 (246)
Q Consensus        81 ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG--~kgkR~a~Pns~iM  156 (246)
                      +.-.=||...+|+||..-  .-|.-|.+..+-.+..++.....|..|+++|.+++.|.+-+++.  ..+..++.|++++-
T Consensus       398 ~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~  477 (569)
T PLN02820        398 AQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIG  477 (569)
T ss_pred             HhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEE
Confidence            344679999999999653  22334677778888888888999999999999999888777643  23456777888775


Q ss_pred             eecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          157 IKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       157 iHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .-.|.+.     ..+- +.+++.+..+.-.+.-.+....-.+++.+..+  ...+|..|-+.|+||.||++.
T Consensus       478 vmg~e~a-----a~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~aa~~~~vD~VIdP~  541 (569)
T PLN02820        478 VMGGAQA-----AGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYSTARLWDDGVIDPA  541 (569)
T ss_pred             ecCHHHH-----HHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHHHHcCCcCcccCHH
Confidence            5444322     1111 12222221111000000000000122222233  366889999999999999876

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=96.91  E-value=0.0033  Score=62.81  Aligned_cols=101  Identities=13%  Similarity=0.037  Sum_probs=64.6

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC--ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn--s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      +.+.|..++.||...+-|.|.+.|..|.++++  .|++.++  ++|-+  |.....|-..+.....            .+
T Consensus       115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD--~rIas~~~~a~fg~--pEv~~~Gl~P~~gg~~------------rl  178 (550)
T PRK08184        115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACD--EIVLVDDRSSAVSL--PEVPLLGVLPGTGGLT------------RV  178 (550)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc--cchhccccCCCcchHH------------Hh
Confidence            45567778899999999999999999999994  7999887  55543  3322112111111000            01


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ............+++-....|+++||+++||||+|.++.
T Consensus       179 ~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d  217 (550)
T PRK08184        179 TDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPS  217 (550)
T ss_pred             hhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH
Confidence            111112233333444446789999999999999998654

>PRK08321 naphthoate synthase; Validated

Probab=96.90  E-value=0.0067  Score=55.86  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=66.0

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEec-cCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~-Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      +++.|..++.||.+.+-|.|.+.|.-|+++++  -|++. ++++|.+-....|.. +-..-                ..+
T Consensus       127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~p~~~~~----------------~~L  188 (302)
T PRK08321        127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQTDADVGSFDGGYGS----------------AYL  188 (302)
T ss_pred             HHHHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEECCccccccCCCchHH----------------HHH
Confidence            44567778899999999999999999999994  79998 688886533332211 11000                012


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-....|+|+||+++||||+|.+..
T Consensus       189 ~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~  225 (302)
T PRK08321        189 ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA  225 (302)
T ss_pred             HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence            22223  22233444457899999999999999999754

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=96.85  E-value=0.0042  Score=55.65  Aligned_cols=96  Identities=16%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-++++++  .|++.++++|-+-....|..   .+..-.    ..+. ++.  . 
T Consensus        92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~~----~~l~-~l~--~-  158 (260)
T PRK07827         92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACD--IVVAGPESTFALTEARIGVA---PAIISL----TLLP-RLS--P-  158 (260)
T ss_pred             HHHHHHHhCCCCEEEEEcCeeecchhhHHHhCC--EEEEcCCCEEeCcccccCCC---CCcccc----hhHH-hhh--H-
Confidence            355667777899999999999999999999994  79999998876533332221   111000    0000 000  0 


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY  226 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~  226 (246)
                             ....+++-....++|+||+++||||+|.+
T Consensus       159 -------~~a~~l~l~g~~~~a~eA~~~Glv~~v~~  187 (260)
T PRK07827        159 -------RAAARYYLTGEKFGAAEAARIGLVTAAAD  187 (260)
T ss_pred             -------HHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence                   01122222356789999999999999853

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=96.75  E-value=0.011  Score=56.35  Aligned_cols=95  Identities=16%  Similarity=0.065  Sum_probs=62.8

Q ss_pred             HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916          114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHF  193 (246)
Q Consensus       114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~T  193 (246)
                      ..|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|.+-....|..   .+..... .+-+.           .
T Consensus        99 ~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~iGl~---p~~g~~~-~L~rl-----------~  161 (379)
T PLN02874         99 YHIHTYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASVGFH---TDCGFSY-ILSRL-----------P  161 (379)
T ss_pred             HHHHhCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEeccccccCcC---CChhHHH-HHHhh-----------h
Confidence            35667789999999999999999999999  479999999876644443322   1111000 01111           0


Q ss_pred             CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      |.   .-..++=.+..++++||+++||||+|+...
T Consensus       162 g~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~  193 (379)
T PLN02874        162 GH---LGEYLALTGARLNGKEMVACGLATHFVPSE  193 (379)
T ss_pred             HH---HHHHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence            10   001223336789999999999999998753

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.67  E-value=0.011  Score=60.62  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.++|  +.|++.++++|-+-....|..   .+..-.            ..+.
T Consensus        93 ~~~~~i~~~~kPvIAav~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~lGl~---p~~g~~------------~~L~  155 (715)
T PRK11730         93 SIFNRLEDLPVPTVAAINGYALGGGCECVLAT--DYRVASPDARIGLPETKLGIM---PGFGGT------------VRLP  155 (715)
T ss_pred             HHHHHHHcCCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhhcCCC---CCchHH------------HHHH
Confidence            35667778889999999999999999999999  479999999886643333321   110000            0011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       156 rlvG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~  191 (715)
T PRK11730        156 RLIG--ADNALEWIAAGKDVRAEDALKVGAVDAVVAPE  191 (715)
T ss_pred             HhcC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHH
Confidence            1122  22334445557789999999999999998654

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=96.56  E-value=0.017  Score=55.62  Aligned_cols=95  Identities=16%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916          114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHF  193 (246)
Q Consensus       114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~T  193 (246)
                      ..|..++.||.+.+-|.|.+.|.-|.++|  +.|++.++++|-+-....|..   .|..-.. .|-+           ..
T Consensus       127 ~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~~iGl~---Pd~G~s~-~L~r-----------l~  189 (401)
T PLN02157        127 YLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPETIIGFH---PDAGASF-NLSH-----------LP  189 (401)
T ss_pred             HHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhhhcCCC---CCccHHH-HHHH-----------hh
Confidence            44677789999999999999999999999  479999998876544433322   1111000 0111           11


Q ss_pred             CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      |.   .-..++=.+..|+++||+++||+|+++...
T Consensus       190 G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~  221 (401)
T PLN02157        190 GR---LGEYLGLTGLKLSGAEMLACGLATHYIRSE  221 (401)
T ss_pred             hH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence            10   011222346889999999999999998765

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=96.52  E-value=0.012  Score=58.73  Aligned_cols=101  Identities=13%  Similarity=0.044  Sum_probs=62.2

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC--ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn--s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      +++.|+.++.||.+.+-|.|.+.|.-|.++|+  -|++.++  ++|-+  |.....|-..+..-..    .        +
T Consensus       111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD--~rvAs~~a~a~f~~--pEv~~lGl~P~~gg~~----~--------l  174 (546)
T TIGR03222       111 IEDSSRHSGLKFLAAVNGTCAGGGYELALACD--EIMLVDDRSSSVSL--PEVPLLGVLPGTGGLT----R--------V  174 (546)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc--cchhccCcCCccchhh----h--------c
Confidence            55667778899999999999999999999994  7999886  45443  4332112111110000    0        0


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..........-.+++-...-|+++||+++||||+|.+..
T Consensus       175 ~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  213 (546)
T TIGR03222       175 TDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPS  213 (546)
T ss_pred             cccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChH
Confidence            000001122222333345679999999999999998643

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.52  E-value=0.015  Score=59.67  Aligned_cols=99  Identities=20%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc-ccChHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~-~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      +..+++.|..++.||.+.+-|.|.+.|.-|.++|  +.|++.++++|-+-....|. -|-..-.        +       
T Consensus        91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalac--D~ria~~~a~fglPEv~lGl~Pg~Ggt~--------r-------  153 (714)
T TIGR02437        91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT--DFRIADDTAKIGLPETKLGIMPGFGGTV--------R-------  153 (714)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEecchhhcCCCCCccHHH--------H-------
Confidence            3457788888899999999999999999999999  58999999988764433332 1111000        0       


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                       +.+..|..  .-.+++-.+..++|+||+++||||+|...
T Consensus       154 -L~rliG~~--~A~~llltG~~~~A~eA~~~GLvd~vv~~  190 (714)
T TIGR02437       154 -LPRVIGAD--NALEWIASGKENRAEDALKVGAVDAVVTA  190 (714)
T ss_pred             -HHHHhCHH--HHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence             11111222  22334445678999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=96.50  E-value=0.011  Score=59.15  Aligned_cols=100  Identities=13%  Similarity=0.111  Sum_probs=68.2

Q ss_pred             HHHHhcccCCCEEEEE-ecccchHH-HHHHhcccCCcEEe-------ccCceeeeecCCcCcccChHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLC-VGNAWGEA-ALLLGAGAKGNRAA-------LPSSTIMIKQPIGRIEGQATDVEIARKEMKNVK  182 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~-~G~AaS~a-a~IlaaG~kgkR~a-------~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~  182 (246)
                      ++..|..++.||.+.+ -|.|.+.| .-|.++|+  -|++       .|+++|.+-....|..-...-.           
T Consensus       357 ~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~-----------  423 (546)
T TIGR03222       357 TLARLDVSSRSLFALIEPGSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSELNFGLYPMVNGL-----------  423 (546)
T ss_pred             HHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCccccccCCCcCcH-----------
Confidence            6677888899999999 79999999 88888884  7999       7999987655544432111100           


Q ss_pred             HHHHHHHHHHh-CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          183 AELVKLYAKHF-GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       183 ~~i~~iya~~T-g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                          ..+.+.. |.+...-.+++-....|+++||+++|||++|.+..
T Consensus       424 ----~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~  466 (546)
T TIGR03222       424 ----SRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDI  466 (546)
T ss_pred             ----HHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence                1123333 43333222222346789999999999999997654

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.48  E-value=0.015  Score=59.66  Aligned_cols=98  Identities=15%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCc-ccChHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRI-EGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~-~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.++|  +.|++.+++...+-.|.  .|. -|-..                ..
T Consensus        92 ~~~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~~lGl~p~~gg----------------~~  153 (708)
T PRK11154         92 QLFAEIEALPIPVVAAIHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEVQLGLLPGSGG----------------TQ  153 (708)
T ss_pred             HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEeCCCCceEeCccccCCCCCCccH----------------Hh
Confidence            46778888999999999999999999999999  47999998633333443  332 11100                01


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.+..|.  ..-.+++-.+..++|+||+++||||+|....
T Consensus       154 ~L~r~vG~--~~A~~llltG~~i~a~eA~~~GLv~~vv~~~  192 (708)
T PRK11154        154 RLPRLIGV--STALDMILTGKQLRAKQALKLGLVDDVVPHS  192 (708)
T ss_pred             HHHhhcCH--HHHHHHHHhCCcCCHHHHHHCCCCcEecChH
Confidence            12222232  3334455557889999999999999998654

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.47  E-value=0.016  Score=59.32  Aligned_cols=99  Identities=15%  Similarity=0.191  Sum_probs=66.6

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCcc-cChHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIE-GQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~~-G~a~di~i~a~el~~~~~~i~  186 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|.+++  +.|++.+++...+..|.  .|.. |-..                .
T Consensus        86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLac--D~ria~~~~~a~fg~pev~lGl~p~~g~----------------~  147 (699)
T TIGR02440        86 QVLFAELEALPIPVVAAIHGACLGGGLELALAC--HSRVCSDDDKTVLGLPEVQLGLLPGSGG----------------T  147 (699)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCcEEechhhcccCCCCccH----------------H
Confidence            446778888899999999999999999999999  47999987433344443  2321 1100                0


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..+.+..|  ...-.+++-.+..++++||+++||||+|.+..
T Consensus       148 ~~L~r~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~  187 (699)
T TIGR02440       148 QRLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQS  187 (699)
T ss_pred             HHHHHhcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecChh
Confidence            01111222  22223444457889999999999999998654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=96.47  E-value=0.005  Score=57.83  Aligned_cols=94  Identities=13%  Similarity=0.107  Sum_probs=64.2

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc---cChHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~---G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ++..|..++.||.+.+-|.|.+.|.-|.++++  -|++.++++|.+-....|..   |-..-+                 
T Consensus        92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~P~~g~~~~L-----------------  152 (342)
T PRK05617         92 LNALIARYPKPYIALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPETGIGFFPDVGGTYFL-----------------  152 (342)
T ss_pred             HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCccccCcCCCccceeEe-----------------
Confidence            45667788899999999999999999999994  79999999887644433321   111001                 


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       .+..|   ..-.+++=.+..++|+||+++||||+|.+..
T Consensus       153 -~r~~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~  188 (342)
T PRK05617        153 -SRAPG---ALGTYLALTGARISAADALYAGLADHFVPSA  188 (342)
T ss_pred             -hhccc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence             00000   0112222236779999999999999998754

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=96.36  E-value=0.023  Score=54.30  Aligned_cols=95  Identities=14%  Similarity=0.063  Sum_probs=61.9

Q ss_pred             HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025916          114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHF  193 (246)
Q Consensus       114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~T  193 (246)
                      ..|..++.||.+.+-|.|.+.|.-|.++|  +.|++.++++|-+-....|..   .|..- .-.+-+.-.. ...|    
T Consensus        99 ~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~mPE~~iGl~---Pd~G~-s~~L~rl~G~-~~~~----  167 (381)
T PLN02988         99 YVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAMPETALGLF---PDVGA-SYFLSRLPGF-FGEY----  167 (381)
T ss_pred             HHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeChhhhcCcC---CCccH-HHHHHHHHHH-HHHH----
Confidence            35667889999999999999999999998  479999998875433333321   11110 0001111111 0111    


Q ss_pred             CCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          194 GKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       194 g~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                               ++=-+..++++||++.||+|+++...
T Consensus       168 ---------l~LTG~~i~a~eA~~~GLv~~vv~~~  193 (381)
T PLN02988        168 ---------VGLTGARLDGAEMLACGLATHFVPST  193 (381)
T ss_pred             ---------HHHcCCCCCHHHHHHcCCceEecCHh
Confidence                     22235789999999999999998754

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.28  E-value=0.0032  Score=61.94  Aligned_cols=134  Identities=20%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCceeeee
Q 025916           83 VEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTIMIK  158 (246)
Q Consensus        83 ~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~iMiH  158 (246)
                      -.=||...+|+||...  .-|.-|-+..+-.+.+++...+.|+.|+++|.++|.|.+.+++..  .+..++.|++++-+-
T Consensus       328 ~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm  407 (493)
T PF01039_consen  328 FNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVM  407 (493)
T ss_dssp             TT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS
T ss_pred             hCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeec
Confidence            3569999999999653  112236677889999999999999999999999998776666642  235788888888766


Q ss_pred             cCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          159 QPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       159 qp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .|.+...     +. +.+++....+.=.+.-+.    ..+.+.+..  +...++..|.+.|++|.|+++.
T Consensus       408 ~~e~a~~-----i~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~a~~~~~D~ii~p~  465 (493)
T PF01039_consen  408 GPEGAAS-----IL-YRDELEAAEAEGADPEAQ----RAEKIAEYE--DELSSPYRAASRGYVDDIIDPA  465 (493)
T ss_dssp             -HHHHHH-----HH-THHHHHHSCHCCHSHHHH----HHHHHHHHH--HHHSSHHHHHHTTSSSEESSGG
T ss_pred             Chhhhhe-----ee-ehhhhhhhhcccchhHHH----HHHHHHHHH--HhcCCHHHHHhcCCCCCccCHH
Confidence            5554311     10 011111110000000000    111122211  2346799999999999999875

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=96.09  E-value=0.033  Score=53.78  Aligned_cols=95  Identities=13%  Similarity=0.076  Sum_probs=62.4

Q ss_pred             HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025916          115 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFG  194 (246)
Q Consensus       115 ~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg  194 (246)
                      .|...+.||.+.+-|.|.+.|.-|.++|  +.|++.++++|-+-....|..   .|+.-. -.+-++-... ..|     
T Consensus       133 ~i~~~pKPvIA~v~G~amGGG~gLal~~--D~rVate~a~famPE~~iGl~---PdvG~s-~~L~rl~g~~-g~~-----  200 (407)
T PLN02851        133 LQGTYLKPNVAIMDGITMGCGAGISIPG--MFRVVTDKTVFAHPEVQMGFH---PDAGAS-YYLSRLPGYL-GEY-----  200 (407)
T ss_pred             HHHhCCCCEEEEEcCEEeeHHHHHHHhC--CEEEEeCCceEecchhccCCC---CCccHH-HHHHHhcCHH-HHH-----
Confidence            4556789999999999999999999998  478998888876644443332   111100 0011111111 111     


Q ss_pred             CCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          195 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       195 ~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                              ++=.+..|+++||+++||+|+++...+
T Consensus       201 --------L~LTG~~i~a~eA~~~GLa~~~v~~~~  227 (407)
T PLN02851        201 --------LALTGQKLNGVEMIACGLATHYCLNAR  227 (407)
T ss_pred             --------HHHhCCcCCHHHHHHCCCceeecCHhh
Confidence                    222367899999999999999987653

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.08  E-value=0.028  Score=58.00  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCc-ccC-hHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRI-EGQ-ATDVEIARKEMKNVKAEL  185 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~-~G~-a~di~i~a~el~~~~~~i  185 (246)
                      ..+++.|..++.||...+-|.|.+.|.-|.++|  +.|++.+++...+-.|.  .|. -|- ..                
T Consensus        98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALac--D~ria~~~a~a~fglpEv~lGl~Pg~Ggt----------------  159 (737)
T TIGR02441        98 QEMFERIEKSQKPIVAAISGSCLGGGLELALAC--HYRIATKDRKTLLGLPEVMLGLLPGAGGT----------------  159 (737)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCCeEecchhhhCCCCCccHh----------------
Confidence            457778888899999999999999999999999  48999998643333343  222 110 11                


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                       ..+.+..|.  ..-.+++-.+..++++||+++||||+|.+.
T Consensus       160 -~rLprliG~--~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       160 -QRLPKLTGV--PAALDMMLTGKKIRADRAKKMGIVDQLVDP  198 (737)
T ss_pred             -hhHHHhhCH--HHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence             011122222  222334445788999999999999999975

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=96.07  E-value=0.036  Score=49.86  Aligned_cols=125  Identities=18%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             chhHHHHHHhhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHH----------HHhcccCCCEEEEEecccchHHHHHHh
Q 025916           71 KPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIY----------DVMGYVKPPIFTLCVGNAWGEAALLLG  140 (246)
Q Consensus        71 ~a~~iiaqL~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIy----------d~m~~i~~~V~Ti~~G~AaS~aa~Ila  140 (246)
                      .+..+...+.+.++.||.+.|++||..+     |.-.+.+.|+          +.-+.-..||.++++|.|.|. +||..
T Consensus        51 lA~~V~~~i~~~~krpIv~lVD~~sQa~-----grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SG-aFLA~  124 (234)
T PF06833_consen   51 LAKAVLDTIRSGPKRPIVALVDVPSQAY-----GRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSG-AFLAH  124 (234)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeCCcccc-----chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccH-HHHHH
Confidence            4555555556678899999999999553     5555555444          444555689999999999995 55654


Q ss_pred             cccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCc--cCHHHHHHc
Q 025916          141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKY--FSPSEAVEY  218 (246)
Q Consensus       141 aG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~--~sa~EAley  218 (246)
                      +---+.-+++|  -.|+|-..-                        .-.++.|.+|.|+++++.+.--.  ...+-=...
T Consensus       125 GlqA~rl~AL~--ga~i~vM~~------------------------~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~l  178 (234)
T PF06833_consen  125 GLQANRLIALP--GAMIHVMGK------------------------PSAARVTKRPVEELEELAKSVPVFAPGIENYAKL  178 (234)
T ss_pred             HHHhcchhcCC--CCeeecCCh------------------------HHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHh
Confidence            43335668888  455554331                        22466788888888888765433  344666788


Q ss_pred             CCceEEccC
Q 025916          219 GIIDKVLYT  227 (246)
Q Consensus       219 GLID~Ii~~  227 (246)
                      |.++++++.
T Consensus       179 G~l~~l~~~  187 (234)
T PF06833_consen  179 GALDELWDG  187 (234)
T ss_pred             ccHHHHhcc
Confidence            888888874

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=95.53  E-value=0.035  Score=55.54  Aligned_cols=97  Identities=14%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             HHHHhcccCCCEEEEEe-cccchHH-HHHHhcccCCcEEec-------cCceeeeecCCcCcc---cChHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCV-GNAWGEA-ALLLGAGAKGNRAAL-------PSSTIMIKQPIGRIE---GQATDVEIARKEMK  179 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~-G~AaS~a-a~IlaaG~kgkR~a~-------Pns~iMiHqp~~~~~---G~a~di~i~a~el~  179 (246)
                      ++..|...+.||.+.+- |.|.+.| .-|.++|  +.|++.       |+++|.+-....|..   |-..-         
T Consensus       361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~---------  429 (550)
T PRK08184        361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSR---------  429 (550)
T ss_pred             HHHHHHhCCCCEEEEECCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHH---------
Confidence            45567777899999996 9999999 8888888  479999       889887655444432   11111         


Q ss_pred             HHHHHHHHHHHHH-hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          180 NVKAELVKLYAKH-FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       180 ~~~~~i~~iya~~-Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                               +.++ .|.+...-..++-....++++||+++||||+|.+..
T Consensus       430 ---------L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~  470 (550)
T PRK08184        430 ---------LARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDI  470 (550)
T ss_pred             ---------hHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence                     1111 122211111111236789999999999999998754

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=94.41  E-value=0.26  Score=45.65  Aligned_cols=106  Identities=14%  Similarity=0.150  Sum_probs=67.1

Q ss_pred             hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHH-------HHHH---hcccCCCEEEEEecccchHHHHHHhcccCCcEEe
Q 025916           80 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFA-------IYDV---MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAA  149 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~a-------Iyd~---m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a  149 (246)
                      .....-|+.....|+|        ....+|..       ++..   +.....|..+++.|-+++.++..++... +-.++
T Consensus       152 A~~~~lPlV~l~dsgG--------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~-D~iia  222 (292)
T PRK05654        152 AIEEKCPLVIFSASGG--------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG-DIIIA  222 (292)
T ss_pred             HHHcCCCEEEEEcCCC--------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC-CEEEE
Confidence            3344678999999999        44333321       2222   2333579999999999998887776632 46788


Q ss_pred             ccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          150 LPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       150 ~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      -|++.+.+--|.        -                  ..+-++   +++.+     -+-+++-+.+.|+||.|+++.
T Consensus       223 ~p~A~ig~aGpr--------v------------------ie~~~~---e~lpe-----~~~~ae~~~~~G~vD~Vv~~~  267 (292)
T PRK05654        223 EPKALIGFAGPR--------V------------------IEQTVR---EKLPE-----GFQRAEFLLEHGAIDMIVHRR  267 (292)
T ss_pred             ecCcEEEecCHH--------H------------------HHhhhh---hhhhh-----hhcCHHHHHhCCCCcEEECHH
Confidence            898888765541        0                  011111   12211     244677788999999999776

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=93.94  E-value=0.3  Score=45.16  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=69.7

Q ss_pred             hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHH---HhcccCCCEEEEEecccchHHHHHHh-cccCCcEEeccCcee
Q 025916           80 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYD---VMGYVKPPIFTLCVGNAWGEAALLLG-AGAKGNRAALPSSTI  155 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd---~m~~i~~~V~Ti~~G~AaS~aa~Ila-aG~kgkR~a~Pns~i  155 (246)
                      .....-|+....+|+|..- -|-.++....-.+..   .+..-..|..+++.|-+++.++..++ .|  +-.++.|++.+
T Consensus       151 A~~~~lPlV~l~dSgGaRm-qEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p~A~i  227 (285)
T TIGR00515       151 ALEDNCPLIIFSASGGARM-QEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG--DLNIAEPKALI  227 (285)
T ss_pred             HHHcCCCEEEEEcCCCccc-ccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC--CEEEEECCeEE
Confidence            4455679999999999432 111122222112222   23333579999999999998877775 55  46788899888


Q ss_pred             eeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          156 MIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       156 MiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+--|.                          ++.+-+|.       .+. +-+-+|+-+.+.|+||.|+++.
T Consensus       228 g~aGpr--------------------------Vie~ti~e-------~lp-e~~q~ae~~~~~G~vD~iv~~~  266 (285)
T TIGR00515       228 GFAGPR--------------------------VIEQTVRE-------KLP-EGFQTSEFLLEHGAIDMIVHRP  266 (285)
T ss_pred             EcCCHH--------------------------HHHHHhcC-------ccc-hhcCCHHHHHhCCCCcEEECcH
Confidence            764442                          11122221       122 3366788889999999999776

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=93.74  E-value=0.14  Score=51.11  Aligned_cols=139  Identities=21%  Similarity=0.310  Sum_probs=79.7

Q ss_pred             HHhhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcE--EeccCc
Q 025916           78 TMYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR--AALPSS  153 (246)
Q Consensus        78 qL~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR--~a~Pns  153 (246)
                      +|.+--.=||.+..|.||++-  .-|.-|-+--|--+.+++-..+.|..|+.+|.+++.|.+.+++..-+-+  |+-|++
T Consensus       353 ~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a  432 (526)
T COG4799         353 RLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTA  432 (526)
T ss_pred             HhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcc
Confidence            444444679999999999773  2233355677888899999999999999999999988766666443322  223445


Q ss_pred             eeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          154 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       154 ~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++-.-.|.     ++-.+ .+.+++....+.     .+..-.-.+.+.+..+ +.+-.|--|-+.|+||.|+++.
T Consensus       433 ~iaVMG~e-----gAv~i-~~~k~l~~~~~~-----~~~~~~~~~~~~~eY~-~~~~~p~~aa~r~~iD~vI~p~  495 (526)
T COG4799         433 EIAVMGPE-----GAVSI-LYRKELAAAERP-----EEREALLRKQLIAEYE-EQFSNPYYAAERGYIDAVIDPA  495 (526)
T ss_pred             eeeecCHH-----HHHHH-HHHHHhhcccCc-----hhHHHHHHHHHHHHHH-HhccchHHHHHhCCCCcccCHH
Confidence            44332222     12221 122333333222     0000000011111111 2344566678899999999875

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=92.10  E-value=0.066  Score=48.49  Aligned_cols=102  Identities=17%  Similarity=0.240  Sum_probs=70.7

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..-|..|...+.||.+-+=|-|.++|.=|..|++  -||+...+.|-+...-.|.   +.|+.    -|+++-+.+    
T Consensus       116 Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDvgl---aADvG----TL~RlpkvV----  182 (292)
T KOG1681|consen  116 QDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDVGL---AADVG----TLNRLPKVV----  182 (292)
T ss_pred             HHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeeeeeeh---hhchh----hHhhhhHHh----
Confidence            4456667777889988888889999998999995  6999999999887765543   33332    133332211    


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                          | ....+.++.-..+-|+|.||+++|||-+|.+.+.
T Consensus       183 ----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~  217 (292)
T KOG1681|consen  183 ----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKE  217 (292)
T ss_pred             ----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHH
Confidence                2 1223344444457799999999999999987653

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=91.05  E-value=0.15  Score=45.61  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      +.+-|+.++.||..-+-|.|+.+|+-+.++++  ...+..+|.|..--.-.|..-....+.     +.+.--+=+..|.-
T Consensus       117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCSTPGvA-----laRavpRkva~~ML  189 (287)
T KOG1682|consen  117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCSTPGVA-----LARAVPRKVAAYML  189 (287)
T ss_pred             HHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCccccCCCCceeeEecCcchh-----HhhhcchhHHHHHH
Confidence            44556777889999999999999999999985  577888888754322223222233332     22222233455666


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      .||+|             .+++||+--||+.+|++...
T Consensus       190 ~Tg~P-------------i~~eeAl~sGlvskvVp~~e  214 (287)
T KOG1682|consen  190 MTGLP-------------ITGEEALISGLVSKVVPAEE  214 (287)
T ss_pred             HhCCC-------------CchHHHHHhhhhhhcCCHHH
Confidence            67766             58999999999999987654

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=84.12  E-value=3.1  Score=38.31  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCchHHHHH-------HHHHHhcccC--CCEEEEEecc--cchHHHHHHhcccCCcEEeccCc
Q 025916           85 KPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIFTLCVGN--AWGEAALLLGAGAKGNRAALPSS  153 (246)
Q Consensus        85 k~I~LyINSpG~~~~~~~~G~v~~g~-------aIyd~m~~i~--~~V~Ti~~G~--AaS~aa~IlaaG~kgkR~a~Pns  153 (246)
                      -|+.+.+.|.|        +...++.       .|+..+...+  .|+.+++.|-  |++.++++.+.+  +..++.|++
T Consensus       100 ~PvV~l~dSgG--------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~--D~vim~~~a  169 (274)
T TIGR03133       100 TAVVLLLDTGG--------VRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC--SYLIMTEEG  169 (274)
T ss_pred             CCEEEEEcCCC--------cChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcC--CEEEEeCCc
Confidence            48999999999        4443332       2332322333  6999999999  788888777777  478888999


Q ss_pred             eeeeecCC
Q 025916          154 TIMIKQPI  161 (246)
Q Consensus       154 ~iMiHqp~  161 (246)
                      ++.+--|.
T Consensus       170 ~i~~aGP~  177 (274)
T TIGR03133       170 RLGLSGPE  177 (274)
T ss_pred             EEeccCHH
Confidence            88887663

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=83.57  E-value=2.7  Score=39.26  Aligned_cols=73  Identities=12%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCCCCC-CCCCCchHHHHHHHHHHhcccC--CCEEEEEecc--cchHHHHHHhcccCCcEEeccCceeeeec
Q 025916           85 KPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQ  159 (246)
Q Consensus        85 k~I~LyINSpG~~~-~~~~~G~v~~g~aIyd~m~~i~--~~V~Ti~~G~--AaS~aa~IlaaG~kgkR~a~Pns~iMiHq  159 (246)
                      -|+.+.+.|.|..- .+.. | ......|+..+..++  .|+.+++.|-  |++.+++..+.+  +..++.|++++.+--
T Consensus       109 ~PvV~l~dSGGaRlqEg~~-~-L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l~--D~iIm~~~a~iglaG  184 (301)
T PRK07189        109 TAVLLLFETGGVRLQEANA-G-LAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALC--SYLIVSEEGRLGLSG  184 (301)
T ss_pred             CCEEEEecCCCcCccchHH-H-HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhcC--CEEEEECCcEEeccC
Confidence            79999999999331 1110 1 111123343333333  7999999999  888888887777  578889999988876


Q ss_pred             CC
Q 025916          160 PI  161 (246)
Q Consensus       160 p~  161 (246)
                      |.
T Consensus       185 P~  186 (301)
T PRK07189        185 PE  186 (301)
T ss_pred             HH
Confidence            63

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		2e-25
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		2e-25
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		2e-25
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		4e-25
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		2e-24
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		1e-22
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		2e-22
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		2e-22
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		5e-22
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		5e-22
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		6e-22
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		7e-22
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		8e-22
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		9e-22
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		3e-21
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		2e-16
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		6e-16
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		6e-16
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		7e-16
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		5e-15
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		5e-15
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		3e-12
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		5e-09

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G           
Sbjct: 67  ENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 118
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQI
Sbjct: 119 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 178
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S  EAVEYG++D +L
Sbjct: 179 ERDTERDRFLSAPEAVEYGLVDSIL 203

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G           
Sbjct: 53  ENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 104
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQI
Sbjct: 105 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 164
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S  EAVEYG++D +L
Sbjct: 165 ERDTERDRFLSAPEAVEYGLVDSIL 189

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G           
Sbjct: 53  ENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 104
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQI
Sbjct: 105 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 164
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S  EAVEYG++D +L
Sbjct: 165 ERDTERDRFLSAPEAVEYGLVDSIL 189

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G           
Sbjct: 53  ENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 104
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQI
Sbjct: 105 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHCREILKVKGRMNELMALHTGQSLEQI 164
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S  EAVEYG++D +L
Sbjct: 165 ERDTERDRFLSAPEAVEYGLVDSIL 189

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG           
Sbjct: 109 ESNKKPIHMYINSPG--------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 160
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P+S IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + I
Sbjct: 161 AGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E+ + R +Y SP EA E+GI+DKVL
Sbjct: 221 ESAMERDRYMSPMEAQEFGILDKVL 245

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           D+   S     +    ED EK I LYINS G        G  T   AIYD M ++KP + 
Sbjct: 37  DNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GSITAGMAIYDTMQFIKPKVS 88
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P+S +MI QP+G  +GQAT++EIA K +  ++ +
Sbjct: 89  TICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDK 148
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL-YTEKSPEDH 234
           L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L +TE     H
Sbjct: 149 LNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDKKHHH 199

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           DS   S     +    ED EK I LYINS G        G  T   +IYD M +++P + 
Sbjct: 39  DSVASSIVAQLLFLEAEDPEKDIGLYINSPG--------GVITSGLSIYDTMNFIRPDVS 90
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P S IMI QP+G  +GQA+D+EI   E+  +K  
Sbjct: 91  TICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGL 150
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 225
           +  + A++ G++ EQI  D  R  Y S  EA EYG+IDKVL
Sbjct: 151 MNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           DS   S     +    ED EK I LYINS G        G  T   +IYD M +++P + 
Sbjct: 39  DSVASSIVAQLLFLEAEDPEKDIGLYINSPG--------GVITSGLSIYDTMNFIRPDVS 90
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P S IMI QP+G  +GQA+D+EI   E+  +K  
Sbjct: 91  TICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGL 150
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 225
           +  + A++ G++ EQI  D  R  Y S  EA EYG+IDKVL
Sbjct: 151 MNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           D+   S     +    ED EK I LYINS G        G  T   AIYD M ++KP + 
Sbjct: 38  DNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GSITAGMAIYDTMQFIKPKVS 89
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P+S +MI QP+G  +GQAT++EIA K +  ++ +
Sbjct: 90  TICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDK 149
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL-YTE 228
           L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L +TE
Sbjct: 150 LNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTHTE 194

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           D+   S     +    ED EK I LYINS G        G  T   AIYD M ++KP + 
Sbjct: 37  DNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GSITAGMAIYDTMQFIKPKVS 88
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P+S +MI QP+G  +GQAT++EIA K +  ++ +
Sbjct: 89  TICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDK 148
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL-YTE 228
           L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L +TE
Sbjct: 149 LNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTHTE 193

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           D+   S     +    ED EK I LYINS G        G  T   AIYD M ++KP + 
Sbjct: 37  DNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GSITAGMAIYDTMQFIKPKVS 88
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P+S +MI QP+G  +GQAT++EIA K +  ++ +
Sbjct: 89  TICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDK 148
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 225
           L K+ A+  G+  E IE D  R  + S  EA+EYG+IDK+L
Sbjct: 149 LNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           D+   S     +    +D EK IYLYINS G        G  T  FAIYD + ++KP + 
Sbjct: 40  DNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQ 91
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P++ +MI QP+G  +GQAT++EIA   +   + +
Sbjct: 92  TICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREK 151
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228
           L ++ ++  G++ E+I+ D  R  + +  EA EYG+ID+V+  E
Sbjct: 152 LNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 195

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           D+   S     +    +D EK IYLYINS G        G  T  FAIYD + ++KP + 
Sbjct: 38  DNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQ 89
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P++ +MI QP+G  +GQAT++EIA   +   + +
Sbjct: 90  TICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREK 149
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228
           L ++ ++  G++ E+I+ D  R  + +  EA EYG+ID+V+  E
Sbjct: 150 LNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 65  DSFCKSKPRSPVITMYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF 124
           D+   S     +    +D EK IYLYINS G        G  T  FAIYD + ++KP + 
Sbjct: 38  DNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQ 89
Query: 125 TLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE 184
           T+C+G                     P++ +MI QP+G  +GQAT++EIA   +   + +
Sbjct: 90  TICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREK 149
Query: 185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228
           L ++ ++  G++ E+I+ D  R  + +  EA EYG+ID+V+  E
Sbjct: 150 LNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE 193

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           E+  K I LYINS G        G  T A AIYD   +VKP + TLC+G           
Sbjct: 55  ENPNKDINLYINSPG--------GAVTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLA 106
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P S++ I Q +G  +GQ TD++I  K+ + V  +L ++ AKH GK  E++
Sbjct: 107 GGAKGKRHCLPHSSVXIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERV 166
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R  + +P EAVEYG+ID + 
Sbjct: 167 EKDTNRDYFLTPEEAVEYGLIDSIF 191

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           ED +K IY YINS G         Y+T  F        +KP + T+C+G           
Sbjct: 57  EDPDKDIYFYINSPGGXVTAGXGVYDTXQF--------IKPDVSTICIGLAASXGSLLLA 108
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     PSS I I QP+G   GQA+D+EI  K +  +K  L K+ A H G+  E I
Sbjct: 109 GGAKGKRYSLPSSQIXIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETI 168
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230
             D  R  +    EA  YG+ID V+ + ++
Sbjct: 169 VKDTDRDNFXXADEAKAYGLIDHVIESREA 198

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           ED  K I LYINS G        G  +   AIYD M      I T  +G           
Sbjct: 54  EDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLA 105
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P + I++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+I
Sbjct: 106 AGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 165
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           EAD  R ++F+ +EA+EYG +D ++
Sbjct: 166 EADSDRDRWFTAAEALEYGFVDHII 190

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           ED  K I LYINS G        G  +   AIYD M      I T  +G           
Sbjct: 55  EDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLA 106
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P + I++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+I
Sbjct: 107 AGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 166
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           EAD  R ++F+ +EA+EYG +D ++
Sbjct: 167 EADSDRDRWFTAAEALEYGFVDHII 191

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           ED  K I LYINS G        G  +   AIYD M      I T  +G           
Sbjct: 54  EDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLA 105
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
                     P + I++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+I
Sbjct: 106 AGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 165
Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           EAD  R ++F+ +EA+EYG +D ++
Sbjct: 166 EADSDRDRWFTAAEALEYGFVDHII 190

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 80  YEDVEKPIYLYINSTGTTKGGEKLGYE--TEAFAIYDVMGYVKPPIFTLCVGNXXXXXXX 137
           YE   KPI+LYINSTG     + +     T+  +I DV+ Y+   ++T C+G        
Sbjct: 54  YESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACI 113
Query: 138 XXXXXXXXXXXXXPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKT 196
                         +S+  + Q    I   QAT++EI  KE+ N K +++++ +K+  K 
Sbjct: 114 LASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKD 173
Query: 197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228
              I   + R KYF+  EAV++ +ID +L  E
Sbjct: 174 TNVISNVLERDKYFNADEAVDFKLIDHILEKE 205

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 80  YEDVEKPIYLYINSTGTTKGGEKLGYE--TEAFAIYDVMGYVKPPIFTLCVGNXXXXXXX 137
           YE   KPI+LYINSTG     + +     T+  +I DV+ Y+   ++T C+G        
Sbjct: 68  YESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACI 127
Query: 138 XXXXXXXXXXXXXPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKHFGKT 196
                         +S+  + Q    I   QAT++EI  KE+ N K +++++ +K+  K 
Sbjct: 128 LASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKD 187
Query: 197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE 228
              I   + R KYF+  EAV++ +ID +L  E
Sbjct: 188 TNVISNVLERDKYFNADEAVDFKLIDHILEKE 219

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 87  IYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXX 146
           I +YINS G        G   E  AI D+  Y+K  I T+  G                 
Sbjct: 71  IKIYINSPG--------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGK 122
Query: 147 XXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR 206
               P+  IMI QP+G   G   D+EI  KE+  +K  L    +    +T E IE D  R
Sbjct: 123 RKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR 182
Query: 207 PKYFSPSEAVEYGIIDKVLYTE 228
             Y +  EA +YGIID+V+ T+
Sbjct: 183 DYYMNALEAKQYGIIDEVIETK 204

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXX 140
           +D  K IYLY+N+ G        G  +   AI D   ++K  + T+  G           
Sbjct: 72  QDSTKDIYLYVNTPG--------GSVSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIAS 123
Query: 141 XXXXXXXXXXPSSTIMIKQPIGRIEGQAT--DVEIARKEMKNVKAELVKLYAKHFGKTPE 198
                     P++   I QP G   G     D+ IA + +   +  L K+ A++ G++ E
Sbjct: 124 SGAKGKRFXLPNAEYXIHQPXGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSXE 183
Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKV 224
           ++ AD  R  + S  E +EYG ID++
Sbjct: 184 KVHADAERDNWXSAQETLEYGFIDEI 209
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	2e-59
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	2e-59
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	2e-59
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	1e-58
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	7e-57
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	8e-57
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	9e-57
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	6e-20

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  185 bits (472), Expect = 2e-59
 Identities = 69/145 (47%), Positives = 92/145 (63%), Gaps = 8/145 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A    A LL 
Sbjct: 53  ENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLT 104

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R  LP+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQI
Sbjct: 105 AGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQI 164

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVL 225
           E D  R ++ S  EAVEYG++D +L
Sbjct: 165 ERDTERDRFLSAPEAVEYGLVDSIL 189

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  185 bits (473), Expect = 2e-59
 Identities = 63/152 (41%), Positives = 85/152 (55%), Gaps = 8/152 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED +K IY YINS G        G  T    +YD M ++KP + T+C+G A    +LLL 
Sbjct: 57  EDPDKDIYFYINSPG--------GMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLA 108

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
            GAKG R +LPSS IMI QP+G   GQA+D+EI  K +  +K  L K+ A H G+  E I
Sbjct: 109 GGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETI 168

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 232
             D  R  +    EA  YG+ID V+ + ++  
Sbjct: 169 VKDTDRDNFMMADEAKAYGLIDHVIESREAII 200

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  185 bits (472), Expect = 2e-59
 Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 8/153 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           +D EK IYLYINS G        G  T  FAIYD + ++KP + T+C+G A    + LL 
Sbjct: 54  QDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLA 105

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AGAKG R ALP++ +MI QP+G  +GQAT++EIA   +   + +L ++ ++  G++ E+I
Sbjct: 106 AGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKI 165

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 233
           + D  R  + +  EA EYG+ID+V+  E     
Sbjct: 166 QKDTDRDNFLTAEEAKEYGLIDEVMVPETKWSH 198

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  183 bits (468), Expect = 1e-58
 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 8/153 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           ED  K I LYINS G        G  +   AIYD M      I T  +G A      LL 
Sbjct: 54  EDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLA 105

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AG KG R ALP + I++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+I
Sbjct: 106 AGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERI 165

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 233
           EAD  R ++F+ +EA+EYG +D ++       +
Sbjct: 166 EADSDRDRWFTAAEALEYGFVDHIITRAHVNGE 198

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  181 bits (461), Expect = 7e-57
 Identities = 69/162 (42%), Positives = 92/162 (56%), Gaps = 8/162 (4%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG A    +LLL 
Sbjct: 109 ESNKKPIHMYINSPG--------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLA 160

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           AG  G R +LP+S IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + I
Sbjct: 161 AGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKK 242
           E+ + R +Y SP EA E+GI+DKVL       +       K+
Sbjct: 221 ESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPTLVQKE 262

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  179 bits (456), Expect = 8e-57
 Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 9/153 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
            +    I +YINS G        G   E  AI D+  Y+K  I T+  G     A+++L 
Sbjct: 66  IN-HNDIKIYINSPG--------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILA 116

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           +G KG R +LP+  IMI QP+G   G   D+EI  KE+  +K  L    +    +T E I
Sbjct: 117 SGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETI 176

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 233
           E D  R  Y +  EA +YGIID+V+ T+     
Sbjct: 177 EKDSDRDYYMNALEAKQYGIIDEVIETKLPHPY 209

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  179 bits (456), Expect = 9e-57
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 10/153 (6%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
           +D  K IYLY+N+ G        G  +   AI D M ++K  + T+ +G A     ++  
Sbjct: 72  QDSTKDIYLYVNTPG--------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIAS 123

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEG--QATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           +GAKG R  LP++  MI QP+G   G  Q TD+ IA + +   +  L K+ A++ G++ E
Sbjct: 124 SGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSME 183

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 231
           ++ AD  R  + S  E +EYG ID+++      
Sbjct: 184 KVHADAERDNWMSAQETLEYGFIDEIMANNSLN 216

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 84.3 bits (208), Expect = 6e-20
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 14/143 (9%)

Query: 85  KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAWGEAALLLGA 141
           + I + +++ G        G       I   +   K P+         +A      +   
Sbjct: 40  EAIIIELDTPG--------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALG 91

Query: 142 GAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIE 201
                 A  P ++I   +PI       + +E          A + K  A+  G+     E
Sbjct: 92  SHL--IAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYI-KSLAQESGRNATIAE 148

Query: 202 ADIRRPKYFSPSEAVEYGIIDKV 224
             I +    +P EA++YG+I+ V
Sbjct: 149 EFITKDLSLTPEEALKYGVIEVV 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	100.0
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.94
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.83
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.65
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.54
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	98.39
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	98.35
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	98.02
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	98.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	97.98
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	97.96
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	97.88
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	97.86
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	97.82
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	97.82
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	97.79
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	97.79
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	97.77
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	97.75
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	97.74
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	97.74
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	97.74
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	97.74
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	97.72
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	97.72
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	97.71
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	97.69
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.67
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	97.66
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	97.66
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	97.63
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	97.63
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	97.62
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	97.61
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	97.61
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	97.61
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	97.59
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	97.58
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	97.58
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	97.58
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	97.57
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	97.57
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	97.57
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	97.57
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.56
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	97.55
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	97.52
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	97.51
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.51
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	97.5
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	97.49
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	97.45
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	97.43
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.42
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	97.42
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	97.41
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	97.41
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	97.4
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	97.39
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	97.39
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	97.38
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	97.36
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	97.36
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	97.35
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	97.34
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	97.34
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	97.32
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	97.31
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	97.28
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	97.26
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	97.26
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	97.25
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	97.24
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	97.22
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	97.22
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	97.21
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	97.2
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.16
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	97.15
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	97.15
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	97.14
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	97.12
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	97.04
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.02
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.87
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	96.85
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	96.83
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	96.8
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.63
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.63
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.6
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.33
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	96.24
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.21
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	95.7
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	95.58
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	86.65

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=5.3e-58  Score=398.82  Aligned_cols=179  Identities=32%  Similarity=0.508  Sum_probs=163.4

Q ss_pred             CCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCC--CCCCCCchHHHHHHHH
Q 025916           47 SVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTT--KGGEKLGYETEAFAIY  113 (246)
Q Consensus        47 ~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~--~~~~~~G~v~~g~aIy  113 (246)
                      +++++++  +|||++||++|||       ++++++|++||    .+|+.++|+|||||||++  .+|+.+|+|++|++||
T Consensus        12 ~~~~~~~--~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIy   89 (205)
T 4gm2_A           12 SGRENLY--FQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIV   89 (205)
T ss_dssp             ------------CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHH
T ss_pred             cCCCCCC--cCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHH
Confidence            4556655  9999999999998       77999999999    678899999999999976  3678899999999999


Q ss_pred             HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc-ccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLYAKH  192 (246)
Q Consensus       114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~  192 (246)
                      |+|+++++||+|+|+|+|||||++||+||+||+|+++|||++|||||+++. .||++|+++++++++++++.+.++|+++
T Consensus        90 d~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~  169 (205)
T 4gm2_A           90 DVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKN  169 (205)
T ss_dssp             HHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          193 FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       193 Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ||++.|+|+++|+||+||||+||++|||||+|+++
T Consensus       170 TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          170 TEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             HTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred             hCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence            99999999999999999999999999999999975

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=2.5e-51  Score=355.66  Aligned_cols=182  Identities=36%  Similarity=0.575  Sum_probs=168.9

Q ss_pred             cccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCch
Q 025916           38 SFISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGY  105 (246)
Q Consensus        38 ~~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~  105 (246)
                      +.++|+++ ++.+|++.  +|+|++||++|||       +.+++.+++||    .+++.++|.|||||||        |+
T Consensus         4 ~~~~p~~~~~~~~~~~~--~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~   73 (201)
T 3p2l_A            4 NNLVPTVIEKTAGGERA--FDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG--------GM   73 (201)
T ss_dssp             -CCSSEECCC-----CC--EEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BC
T ss_pred             CCcCCeeeeeCCCCCcc--cCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CC
Confidence            35789998 78889977  9999999999998       67899999998    4577899999999999        99


Q ss_pred             HHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHH
Q 025916          106 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL  185 (246)
Q Consensus       106 v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i  185 (246)
                      +++|++|||+|+++++||+|+|.|+|||+|++|+++|++|+|+++|||++|+|||+++..|+++|++++++++.++++.+
T Consensus        74 v~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~  153 (201)
T 3p2l_A           74 VTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRL  153 (201)
T ss_dssp             HHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      .++|+++||++.|+|++++++++||||+||++|||||+|+++.+
T Consensus       154 ~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~  197 (201)
T 3p2l_A          154 NKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESRE  197 (201)
T ss_dssp             HHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSC
T ss_pred             HHHHHHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCCHH
Confidence            99999999999999999999999999999999999999998764

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=4.5e-51  Score=354.61  Aligned_cols=181  Identities=37%  Similarity=0.587  Sum_probs=168.1

Q ss_pred             ccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchH
Q 025916           39 FISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYE  106 (246)
Q Consensus        39 ~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v  106 (246)
                      .++|+++ ++.+|++.  +|||++||++|||       +.+++.+++||    .+++.++|.|||||||        |++
T Consensus         2 ~~~p~~~~~~~~~~~~--~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG--------G~v   71 (203)
T 3qwd_A            2 NLIPTVIETTNRGERA--YDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSV   71 (203)
T ss_dssp             -CCCEEECC-----CE--EEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCH
T ss_pred             CCCCeeeeecCCCCcc--cCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC--------CCH
Confidence            4689998 78889977  9999999999998       67899999998    4567899999999999        999


Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      ++|++|||+|+++++||+|+|.|+|||+|++|+++|++|+|+++|||++|+|||+++..|+++|+++++++++++++.+.
T Consensus        72 ~~~~~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~  151 (203)
T 3qwd_A           72 TAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLN  151 (203)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      ++|+++||++.++|++++++|+||||+||++|||||+|+.+.+
T Consensus       152 ~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          152 RILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             HHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCCC
T ss_pred             HHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCCcc
Confidence            9999999999999999999999999999999999999998764

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=1.8e-49  Score=358.81  Aligned_cols=193  Identities=38%  Similarity=0.555  Sum_probs=166.5

Q ss_pred             cccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCch
Q 025916           38 SFISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGY  105 (246)
Q Consensus        38 ~~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~  105 (246)
                      .+++|+++ ++.+|++.  +|+|++||++|||       +.+++.+++||    .+++.++|.|||||||        |+
T Consensus        56 ~~~~p~~~~~~~~~~~~--~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG--------Gs  125 (277)
T 1tg6_A           56 LPLIPIVVEQTGRGERA--YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GV  125 (277)
T ss_dssp             -CCCCBCC-----------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BC
T ss_pred             CCCCCeeeccCCCCccc--ccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CC
Confidence            35789988 66778865  9999999999998       56889999998    4577899999999999        99


Q ss_pred             HHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHH
Q 025916          106 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL  185 (246)
Q Consensus       106 v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i  185 (246)
                      |++|++|||+|+++++||+|+|.|+|||+|++|+++|++|||+++||+++|+|||+++..|+++|+++++++++++++.+
T Consensus       126 V~ag~aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~  205 (277)
T 1tg6_A          126 VTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQL  205 (277)
T ss_dssp             HHHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC-CCcchhhHh
Q 025916          186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP-EDHGVVSDL  240 (246)
Q Consensus       186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~-~~~~~~~~~  240 (246)
                      .++|+++||++.|+|++++++|+|||++||++|||||+|++..+.. ++....+|+
T Consensus       206 ~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~~~~~~~~~~~~  261 (277)
T 1tg6_A          206 YNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPTLVQK  261 (277)
T ss_dssp             HHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC------------
T ss_pred             HHHHHHHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCcchhhcccccccccc
Confidence            9999999999999999999999999999999999999999887543 445555554

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=6.8e-46  Score=318.27  Aligned_cols=179  Identities=41%  Similarity=0.630  Sum_probs=167.9

Q ss_pred             cccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHH
Q 025916           40 ISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYET  107 (246)
Q Consensus        40 ~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~  107 (246)
                      ++|.+. ++.+|++.  +|+|++|+++|||       +.+++.++++|    .+++.++|.|||||||        |+++
T Consensus         2 ~~p~~~~~~~~~~~~--~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG--------G~v~   71 (193)
T 1yg6_A            2 LVPMVIEQTSRGERS--FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVIT   71 (193)
T ss_dssp             CSCBCCSSSCSSCCC--CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHH
T ss_pred             CCCeecccCCCCcch--hhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC--------CCHH
Confidence            478877 56677766  9999999999998       55788999998    3567899999999999        9999


Q ss_pred             HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      ++++|||+|+.++.||+|+|.|+|||+|++|+++|++|+|++.||+++|+|||+++..|+++|+++.++++++.++.+.+
T Consensus        72 a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~  151 (193)
T 1yg6_A           72 AGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNE  151 (193)
T ss_dssp             HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +|+++||++.+++++++++++|||++||++|||||+|+++.
T Consensus       152 ~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~~  192 (193)
T 1yg6_A          152 LMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR  192 (193)
T ss_dssp             HHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             HHHHHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecCCC
Confidence            99999999999999999999999999999999999998754

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=2.9e-45  Score=320.30  Aligned_cols=177  Identities=32%  Similarity=0.460  Sum_probs=154.6

Q ss_pred             CCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCC
Q 025916           54 GLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP  122 (246)
Q Consensus        54 ~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~  122 (246)
                      .++|+|++|+++|||       +.+++.++++|    .+++ ++|.|||||||        |+|+++++|||+|++++.|
T Consensus        28 ~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG--------Gsv~a~~~I~~~i~~~~~p   98 (215)
T 2f6i_A           28 MKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPG--------GSINEGLAILDIFNYIKSD   98 (215)
T ss_dssp             SSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC--------BCHHHHHHHHHHHHHSSSC
T ss_pred             ccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC--------CCHHHHHHHHHHHHhcCCC
Confidence            458999999999998       56788999998    3456 99999999999        9999999999999999999


Q ss_pred             EEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 025916          123 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA  202 (246)
Q Consensus       123 V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~  202 (246)
                      |+|+|.|+|||+|++|+++|++|+|++.||+++|+|||+++..|++.|+.+.++++.++++.+.++|+++||++.++|++
T Consensus        99 V~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~  178 (215)
T 2f6i_A           99 IQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEK  178 (215)
T ss_dssp             EEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCHHHHHHcCCceEEccCCCCCCCcchhhHhhh
Q 025916          203 DIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKK  242 (246)
Q Consensus       203 ~~~rd~~~sa~EAleyGLID~Ii~~~~~~~~~~~~~~~~~  242 (246)
                      ++++++|||++||++|||||+|++..   .+..++.+|+|
T Consensus       179 ~~~~~~~lta~eA~e~GLiD~I~~~~---~~~~~~~~~~~  215 (215)
T 2f6i_A          179 DSDRDYYMNALEAKQYGIIDEVIETK---LPHPYFNKVEK  215 (215)
T ss_dssp             HHHTTCEECHHHHHHHTSCSEECCCS---SCCTTCC----
T ss_pred             HHhCCeecCHHHHHHCCCCCEecCCc---ccchhhhhccC
Confidence            99999999999999999999999765   44556666665

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=100.00  E-value=1.2e-44  Score=316.55  Aligned_cols=181  Identities=30%  Similarity=0.487  Sum_probs=152.2

Q ss_pred             ccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchH
Q 025916           39 FISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYE  106 (246)
Q Consensus        39 ~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v  106 (246)
                      .++|+++ ++.++++.  +|+|++||++|||       +++++.++++|    .+++.++|.|||||||        |++
T Consensus        20 ~~~p~~~~~~~~~~~~--~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPG--------G~v   89 (218)
T 1y7o_A           20 HMIPVVIEQTSRGERS--YDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG--------GSV   89 (218)
T ss_dssp             --CCEECC-------C--EEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC--------BCH
T ss_pred             CCCceeeecCCCCcch--hhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC--------CCH
Confidence            4688887 66778865  9999999999998       56789999998    4567899999999999        999


Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc--ccChHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI--EGQATDVEIARKEMKNVKAE  184 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~--~G~a~di~i~a~el~~~~~~  184 (246)
                      +++++|||+|+++++||.|+|.|.|+|+|++|+++|++|||++.||++||+|||+++.  .|+++|+++.++++++.++.
T Consensus        90 ~ag~~I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~~~G~~~di~~~~~~i~~~~~~  169 (218)
T 1y7o_A           90 SAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNT  169 (218)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecccccccCcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887  89999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       185 i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      +.++|++++|++.+++++++++++||||+||++|||||+|++..+
T Consensus       170 ~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          170 LEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             HHHHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence            999999999999999999999999999999999999999997653

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=100.00  E-value=9e-44  Score=308.70  Aligned_cols=182  Identities=32%  Similarity=0.479  Sum_probs=150.3

Q ss_pred             ccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchH
Q 025916           39 FISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYE  106 (246)
Q Consensus        39 ~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v  106 (246)
                      .++|++. .+.++++.  +|+|++|+++|||       +.+++.++++|    .+++.++|.|+|||||        |++
T Consensus         2 ~~~p~~~~~~~~~~~~--~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG--------G~v   71 (208)
T 2cby_A            2 SQVTDMRSNSQGLSLT--DSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSI   71 (208)
T ss_dssp             -------------CHH--HHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCH
T ss_pred             CCCCeeeccCCCCcch--hhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC--------CCH
Confidence            3568777 55667754  8999999999998       55788999998    3467899999999999        999


Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      +++++|||+|+.++.||+|+|.|+|||+|++|+++|++++|++.|++++|+|||.++..|+++|+++.+++++++++.+.
T Consensus        72 ~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~  151 (208)
T 2cby_A           72 SAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMF  151 (208)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS  230 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~  230 (246)
                      ++|+++||++.+++++++++++|||++||++|||||+|++....
T Consensus       152 ~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~  195 (208)
T 2cby_A          152 RLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHV  195 (208)
T ss_dssp             HHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC--
T ss_pred             HHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHH
Confidence            99999999999999999999999999999999999999976543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.94  E-value=4.7e-27  Score=207.23  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=129.6

Q ss_pred             cCCCCCCCchhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEEEE---ecccchHHH
Q 025916           63 NPDSFCKSKPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC---VGNAWGEAA  136 (246)
Q Consensus        63 l~~RIi~~~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~---~G~AaS~aa  136 (246)
                      ++.-|-+.+++.+.++|   .+++.+.|.|+|||||        |+++++.+||++|+.++.||.++|   .|.|+|+|+
T Consensus        15 i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~inspG--------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~   86 (230)
T 3viv_A           15 IKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPG--------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGT   86 (230)
T ss_dssp             EESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSC--------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHHH
T ss_pred             EeCEECHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHHH
Confidence            33444467788888888   3456799999999999        999999999999999999999999   999999999


Q ss_pred             HHHhcccCCcEEeccCceeeeecCCc--CcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHH
Q 025916          137 LLLGAGAKGNRAALPSSTIMIKQPIG--RIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSE  214 (246)
Q Consensus       137 ~IlaaG~kgkR~a~Pns~iMiHqp~~--~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~E  214 (246)
                      +|+++|+  +|++.|+++|++|+|..  +..|++.++  ..+.+..++. +.+.|++++|++.+++++++++++||||+|
T Consensus        87 ~ia~a~d--~~~a~p~a~ig~~~p~~~~~~~G~~~~~--~~k~~~~~~~-~~~~la~~~Gr~~~~a~~~~~~~~~ltA~E  161 (230)
T 3viv_A           87 YIALGSH--LIAMAPGTSIGACRPILGYSQNGSIIEA--PPAITNYFIA-YIKSLAQESGRNATIAEEFITKDLSLTPEE  161 (230)
T ss_dssp             HHHHTSS--EEEECTTCEEECCCEEEEECTTSCEEEC--CHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHTCCEECHHH
T ss_pred             HHHHhcC--ceeECCCCEEEeccceecCCCCCCchHH--HHHHHHHHHH-HHHHHHHHhCcCHHHHHHHHhcCCeecHHH
Confidence            9999995  79999999999999984  456765432  2344555554 447899999999999999999999999999


Q ss_pred             HHHcCCceEEccC
Q 025916          215 AVEYGIIDKVLYT  227 (246)
Q Consensus       215 AleyGLID~Ii~~  227 (246)
                      |++|||||+|.+.
T Consensus       162 Ale~GliD~V~~~  174 (230)
T 3viv_A          162 ALKYGVIEVVARD  174 (230)
T ss_dssp             HHHTTSCSEECSS
T ss_pred             HHHcCCceEecCC
Confidence            9999999999865

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.83  E-value=1.1e-20  Score=185.78  Aligned_cols=162  Identities=12%  Similarity=0.051  Sum_probs=117.8

Q ss_pred             CCccccccCCCCC-------CCchhHHHHHH---h-hCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccC---C
Q 025916           56 RLRPDCLNPDSFC-------KSKPRSPVITM---Y-EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---P  121 (246)
Q Consensus        56 ~di~s~Ll~~RIi-------~~~a~~iiaqL---~-ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~---~  121 (246)
                      .|.+++|+++.+-       +..+++++++|   . +++.+.|.|+|||||.       |++.++.+||++|+.++   .
T Consensus        49 ~~~~~~ll~~~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGg-------G~v~~~~~I~~~i~~~k~~gk  121 (593)
T 3bf0_A           49 SQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAG-------GDQPSMQYIGKALKEFRDSGK  121 (593)
T ss_dssp             ------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEE-------CCHHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHhhhccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCC-------CcHHHHHHHHHHHHHHHhcCC
Confidence            3667777755222       24788999999   3 3456999999999981       48999999999999996   5


Q ss_pred             CEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcC---cc---------------cC--------------hH
Q 025916          122 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR---IE---------------GQ--------------AT  169 (246)
Q Consensus       122 ~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~---~~---------------G~--------------a~  169 (246)
                      ||++++. .|+|.|.+|.+++  +++|+.|++.+|+|+|...   +.               |+              ..
T Consensus       122 pvva~~~-~aas~~y~lAsaa--d~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~  198 (593)
T 3bf0_A          122 PVYAVGE-NYSQGQYYLASFA--NKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPA  198 (593)
T ss_dssp             CEEEEES-CEEHHHHHHHTTS--SEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHH
T ss_pred             eEEEEEc-cchhHHHHHHHhC--CEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHH
Confidence            6766643 3555555555555  7999999999999999753   11               21              12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC-------CCccCHHHHHHcCCceEEccC
Q 025916          170 DVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       170 di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~r-------d~~~sa~EAleyGLID~Ii~~  227 (246)
                      +.+...+.++.+.+.+.+.+++++|++.+++.+++++       ++||+++||+++||||+|...
T Consensus       199 ~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~  263 (593)
T 3bf0_A          199 AREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASS  263 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCH
Confidence            2244456677788899999999999999999999998       899999999999999999854

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.65  E-value=2.4e-15  Score=132.26  Aligned_cols=146  Identities=18%  Similarity=0.181  Sum_probs=119.6

Q ss_pred             chhHHHHHH---hhCC-CCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhccc----CCCEEEEEecccchHHHHHHhcc
Q 025916           71 KPRSPVITM---YEDV-EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV----KPPIFTLCVGNAWGEAALLLGAG  142 (246)
Q Consensus        71 ~a~~iiaqL---~ed~-~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i----~~~V~Ti~~G~AaS~aa~IlaaG  142 (246)
                      ..+.+..+|   .+|+ .+.|.|.+||||        |++.++..|++.++.+    +.||.+.+-|.|+|.|.+|+++|
T Consensus        30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~  101 (240)
T 3rst_A           30 NHRTFLKNLERAKDDKTVKGIVLKVNSPG--------GGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAA  101 (240)
T ss_dssp             CHHHHHHHHHHHHHCTTEEEEEEEEEECC--------BCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHhCCCcEEEEEEecCCC--------CCHHHHHHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhC
Confidence            346666666   3344 588999999999        9999999999999875    67999999999999999999999


Q ss_pred             cCCcEEeccCceeeeecCC---------------------cC--------ccc-ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          143 AKGNRAALPSSTIMIKQPI---------------------GR--------IEG-QATDVEIARKEMKNVKAELVKLYAKH  192 (246)
Q Consensus       143 ~kgkR~a~Pns~iMiHqp~---------------------~~--------~~G-~a~di~i~a~el~~~~~~i~~iya~~  192 (246)
                        +.|++.|++++.++-..                     .+        +.. ...+-+...+.++.+.+.|.+.+++.
T Consensus       102 --D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~  179 (240)
T 3rst_A          102 --DKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKG  179 (240)
T ss_dssp             --SEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              57999999999887331                     11        111 23455666778899999999999999


Q ss_pred             hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          193 FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       193 Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +|++.+++.++++. +.|+++||+++||||+|...
T Consensus       180 R~l~~~~~~~~~~g-~~~~a~~A~~~GLVD~i~~~  213 (240)
T 3rst_A          180 RGMPKAEVKKIADG-RVYDGRQAKKLNLVDELGFY  213 (240)
T ss_dssp             HTCCHHHHHHHCSS-CEEEHHHHHHTTSSSEECCH
T ss_pred             CCCCHHHHHHHhcC-CcccHHHHHHcCCCcccCCH
Confidence            99999999997775 56799999999999999753

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.54  E-value=1.7e-14  Score=141.87  Aligned_cols=146  Identities=18%  Similarity=0.135  Sum_probs=117.8

Q ss_pred             chhHHHHHH---hhC-CCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhccc---CCCEEEEEecccchHHHHHHhccc
Q 025916           71 KPRSPVITM---YED-VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAALLLGAGA  143 (246)
Q Consensus        71 ~a~~iiaqL---~ed-~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i---~~~V~Ti~~G~AaS~aa~IlaaG~  143 (246)
                      ..+.+.+.|   .+| ..+.|.|++||||        |++.++..|++.++.+   +.||++.+-|.|+|+|++|+++| 
T Consensus       323 ~~~~l~~~L~~a~~d~~vkaVVL~i~spG--------G~~~~~~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aa-  393 (593)
T 3bf0_A          323 GGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPA-  393 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTEEEEEEEEEEEE--------ECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTC-
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhC-
Confidence            457777777   344 4589999999999        9999999999988875   47999999999999999999999 


Q ss_pred             CCcEEeccCceeeeecC------C------cCc----------------c-cChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025916          144 KGNRAALPSSTIMIKQP------I------GRI----------------E-GQATDVEIARKEMKNVKAELVKLYAKHFG  194 (246)
Q Consensus       144 kgkR~a~Pns~iMiHqp------~------~~~----------------~-G~a~di~i~a~el~~~~~~i~~iya~~Tg  194 (246)
                       +.|++.|++.+....+      .      .|.                . +...+.+...+.++.....+.+.+++.+|
T Consensus       394 -D~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg  472 (593)
T 3bf0_A          394 -NYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARH  472 (593)
T ss_dssp             -SEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -CEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             4799999999865432      1      111                1 13445555667788888999999999999


Q ss_pred             CCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          195 KTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       195 ~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ++.+.++.+++. +.|+++||+++||||+|...
T Consensus       473 ~~~~a~~~l~~G-~~~ta~eA~~~GLVD~v~~~  504 (593)
T 3bf0_A          473 STPEQIDKIAQG-HVWTGQDAKANGLVDSLGDF  504 (593)
T ss_dssp             CCHHHHHTTCTT-CEEEHHHHHHHTSCSEECCH
T ss_pred             CCHHHHHHHhcC-CCcCHHHHHHCCCCcCccCH
Confidence            999999887774 56799999999999999743

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=98.39  E-value=8.5e-07  Score=81.93  Aligned_cols=120  Identities=21%  Similarity=0.264  Sum_probs=80.7

Q ss_pred             hhCCCCCEEEEEcCCCCCCC--CCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~~--~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+...-||...+||||....  -|..|....+..+...+...+.|+.+++.|.|+|.|+.++++|  +.+++.|++++-+
T Consensus       170 A~~~~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~--D~via~p~A~~~v  247 (339)
T 2f9y_A          170 AERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVG--DKVNMLQYSTYSV  247 (339)
T ss_dssp             HHHTTCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCC--SEEEECTTCEEES
T ss_pred             HhhcCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhcc--CeeeecCCCEEEe
Confidence            34446799999999995431  1223444455566777888899999999999999999998887  5799999999875


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      =.|.++    ++                  ++-.... ...+..+.    ..++|++|++.|+||+|+..+
T Consensus       248 ~~Peg~----as------------------il~~~~~-~~~~Aae~----~~itA~~a~~~GlVd~VV~ep  291 (339)
T 2f9y_A          248 ISPEGC----AS------------------ILWKSAD-KAPLAAEA----MGIIRPRLKELKLIDSIIPEP  291 (339)
T ss_dssp             SCHHHH----HH------------------HHSSCST-THHHHHHH----HTCSHHHHHTTTSCSCCCCCS
T ss_pred             eccchH----HH------------------HHHHhhc-cHHHHHHH----cCCCHHHHHHcCCeeEEecCC
Confidence            222211    00                  0000000 00111112    568999999999999999854

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.35  E-value=1.4e-06  Score=80.12  Aligned_cols=120  Identities=22%  Similarity=0.330  Sum_probs=80.4

Q ss_pred             hhCCCCCEEEEEcCCCCCCCC--CCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTKGG--EKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~~~--~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+...-||...+||||....-  |..|....+..+...+...+.|+.+++.|.|+|.|+.++++|  +.+++.|+++|.+
T Consensus       156 A~~~~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~--D~via~~~A~~~v  233 (327)
T 2f9i_A          156 AEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIA--NKVLMLENSTYSV  233 (327)
T ss_dssp             HHHTTCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCC--SEEEEETTCBCBS
T ss_pred             HhhcCCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCC--CEEEEcCCceEee
Confidence            344467999999999954311  223444455566777888899999999999999999998887  5799999999875


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      -.|.++.    +-+   .+.....                .+..+.    ..++|++|++.|+||+|+..+
T Consensus       234 ~~peg~a----~il---~~~~~~a----------------~~A~e~----~~itA~~a~~~GlVd~VV~ep  277 (327)
T 2f9i_A          234 ISPEGAA----ALL---WKDSNLA----------------KIAAET----MKITAHDIKQLGIIDDVISEP  277 (327)
T ss_dssp             SCHHHHH----HHH---SSCGGGH----------------HHHHHH----HTCBHHHHHHTTSSSEEECCC
T ss_pred             cCchHHH----HHH---HHHhcch----------------HHHHHH----cCCCHHHHHHcCCceEEecCC
Confidence            3222110    000   0000000                001111    568999999999999999754

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=98.02  E-value=5.1e-05  Score=66.59  Aligned_cols=96  Identities=22%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|-+.....|.. | -.+-                 .
T Consensus        86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~  146 (258)
T 2pbp_A           86 ADWDRLSIVKTPMIAAVNGLALGGGFELALSC--DLIVASSAAEFGFPEVNLGVMPGAGGTQ-----------------R  146 (258)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCCSSHHH-----------------H
T ss_pred             HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhC--CEEEEcCCCEEECcccccCCCCcccHHH-----------------H
Confidence            45677888899999999999999999999999  479999999987655544432 1 1111                 1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +.+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       147 l~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  183 (258)
T 2pbp_A          147 LTKLIG--PKRALEWLWTGARMSAKEAEQLGIVNRVVSP  183 (258)
T ss_dssp             HHHHHC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG
T ss_pred             HHHHhC--HHHHHHHHHcCCccCHHHHHHcCCcceeeCh
Confidence            222223  2333444444678899999999999999864

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=98.00  E-value=4.2e-05  Score=67.10  Aligned_cols=99  Identities=14%  Similarity=0.069  Sum_probs=69.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+.....|..-..--..               .+
T Consensus        84 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l  146 (257)
T 2ej5_A           84 APMMKALHHLEKPVVAAVNGAAAGAGMSLALAC--DFRLLSEKASFAPAFIHVGLVPDAGHLY---------------YL  146 (257)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCTTHHH---------------HH
T ss_pred             HHHHHHHHhCCCCEEEEECccccchhHHHHHhC--CEEEEcCCCEEeCcccccCCCCcchHHH---------------HH
Confidence            355667788899999999999999999999999  4899999999876544434321100000               11


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..|  ...-.+++-.+..++++||+++||||+|.+.
T Consensus       147 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  182 (257)
T 2ej5_A          147 PRLVG--RAKALELAVLGEKVTAEEAAALGLATKVIPL  182 (257)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHHTCCSEEECG
T ss_pred             HHHhC--HHHHHHHHHhCCccCHHHHHHcCCcceecCh
Confidence            22222  2233444444678999999999999999864

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=97.98  E-value=5.4e-05  Score=66.15  Aligned_cols=98  Identities=10%  Similarity=0.065  Sum_probs=69.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|-+.....|.   ..+.. .            ..+.
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~Gl---~p~~g-~------------~~l~  146 (253)
T 1uiy_A           85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALAC--DLVVMDEEARLGYTEVKIGF---VAALV-S------------VILV  146 (253)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECCHHHHTC---CCHHH-H------------HHHH
T ss_pred             HHHHHHHhCCCCEEEEECCeeeHHHHHHHHhC--CEEEEcCCcEEeCcccccCc---CCchH-H------------HHHH
Confidence            44556777889999999999999999999999  48999999998654333332   11211 0            1122


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-.+..++++||+++||||+|.+..
T Consensus       147 r~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  182 (253)
T 1uiy_A          147 RAVG--EKAAKDLLLTGRLVEAREAKALGLVNRIAPPG  182 (253)
T ss_dssp             HHSC--HHHHHHHHHHCCEEEHHHHHHHTSCSEEECTT
T ss_pred             HHhC--HHHHHHHHHhCCccCHHHHHHCCCcceecChh
Confidence            3333  34445555557899999999999999998653

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=97.96  E-value=0.00012  Score=64.88  Aligned_cols=100  Identities=19%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..+++.|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+.....|.....--..               .+
T Consensus        95 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l  157 (272)
T 1hzd_A           95 RAVINDIANLPVPTIAAIDGLALGGGLELALAC--DIRVAASSAKMGLVETKLAIIPGGGGTQ---------------RL  157 (272)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSSHHH---------------HH
T ss_pred             HHHHHHHHhCCCCEEEEeCceEEecHHHHHHhC--CEEEEcCCCEEeCchhccCCCCCchHHH---------------HH
Confidence            355677888899999999999999999999999  4899999999877655544321100000               12


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       158 ~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  194 (272)
T 1hzd_A          158 PRAIG--MSLAKELIFSARVLDGKEAKAVGLISHVLEQN  194 (272)
T ss_dssp             HHHHC--HHHHHHHHHHTCEEEHHHHHHHTSCSEEECCC
T ss_pred             HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCcceecChh
Confidence            22223  22334444447889999999999999998654

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=97.88  E-value=6e-05  Score=66.30  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEec--cCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL--PSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~--Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..+++.|..++.||.+.+-|.|.+.|.-|++++  +.|++.  |+++|-+-....|..-..--.               .
T Consensus        87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~~~a~f~~pe~~~Gl~p~~g~~---------------~  149 (260)
T 1sg4_A           87 QELWLRLYQSNLVLVSAINGACPAGGCLVALTC--DYRILADNPRYCIGLNETQLGIIAPFWLK---------------D  149 (260)
T ss_dssp             HHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTS--SEEEEECCTTCCBSCCGGGGTCCCCHHHH---------------H
T ss_pred             HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEEecCCCCEEeCchhhhCCCCchhHH---------------H
Confidence            355677788889999999999999999999999  489999  899886544443332111100               1


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+.+..|  ...-.+++-.+..++++||+++||||+|.+.
T Consensus       150 ~l~~~vG--~~~a~~llltg~~~~a~eA~~~GLv~~vv~~  187 (260)
T 1sg4_A          150 TLENTIG--HRAAERALQLGLLFPPAEALQVGIVDQVVPE  187 (260)
T ss_dssp             HHHHHHC--HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             HHHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCCCEecCH
Confidence            1222333  2233444444678999999999999999854

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=97.86  E-value=0.00027  Score=61.60  Aligned_cols=98  Identities=15%  Similarity=0.207  Sum_probs=69.3

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|-+-....|..   .+..-.             .+
T Consensus        84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~---p~~g~~-------------~l  145 (250)
T 2a7k_A           84 IDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMF--DQRLMASTANFVMPELKHGIG---CSVGAA-------------IL  145 (250)
T ss_dssp             HHHHHHHHTCCSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGGTCC---CHHHHH-------------HH
T ss_pred             HHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhC--CEEEEcCCCEEeCcccccCCC---CCcHHH-------------HH
Confidence            345667788899999999999999999999999  489999999987654443331   111100             12


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       146 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  181 (250)
T 2a7k_A          146 GFTHG--FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES  181 (250)
T ss_dssp             HHHHC--HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH
T ss_pred             HHHhH--HHHHHHHHHcCCcccHHHHHHcCCcceecCH
Confidence            22223  2333444444678999999999999999864

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=97.82  E-value=6.2e-05  Score=66.40  Aligned_cols=95  Identities=20%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.. + -..-                 .
T Consensus        92 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~  152 (263)
T 3lke_A           92 HCVLEIFTSPKVTVALINGYAYGGGFNMMLAC--DRRIALRRAKFLENFHKMGISPDLGASY-----------------F  152 (263)
T ss_dssp             HHHHHHHTCSSEEEEEECSEEETHHHHGGGGS--SEEEEETTCEEECCHHHHTCCCCTTHHH-----------------H
T ss_pred             HHHHHHHhCCCCEEEEECCEeeHHHHHHHHHC--CEEEEcCCCEEeCchHhhCCCCCccHHH-----------------H
Confidence            46677788889999999999999999999999  479999999986543333321 1 1111                 0


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY  226 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~  226 (246)
                      +.+..|  ...-.+++-.+..++|+||+++||||+|.+
T Consensus       153 L~~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~  188 (263)
T 3lke_A          153 LPRIIG--YEQTMNLLLEGKLFTSEEALRLGLIQEICE  188 (263)
T ss_dssp             HHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEES
T ss_pred             HHHHhC--HHHHHHHHHhCCCcCHHHHHHcCCCcEecC
Confidence            111122  233344444567899999999999999986

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=97.82  E-value=0.00013  Score=64.23  Aligned_cols=99  Identities=14%  Similarity=0.081  Sum_probs=68.9

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCc-eeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSS-TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns-~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.+++ +|-+-....|..-..--..               .
T Consensus        91 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~ag~f~~pe~~~Gl~p~~g~~~---------------~  153 (265)
T 2ppy_A           91 NETLDKIARSPQVYIACLEGHTVGGGLEMALAC--DLRFMGDEAGKIGLPEVSLGVLAGTGGTQ---------------R  153 (265)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHTS--SEEEEETTCCCEECCGGGGTCCCTTTHHH---------------H
T ss_pred             HHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhC--CEEEEeCCCCEEECcccccCCCCCchHHH---------------H
Confidence            356777888899999999999999999999999  489999999 8876444433211000000               1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +.+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       154 l~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  190 (265)
T 2ppy_A          154 LARLIG--YSRALDMNITGETITPQEALEIGLVNRVFPQ  190 (265)
T ss_dssp             HHHHHC--HHHHHHHHHHCCCBCHHHHHHHTSSSEEECG
T ss_pred             HHHHhC--HHHHHHHHHhCCccCHHHHHHCCCcceecCH
Confidence            222223  2233344444678999999999999999864

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=97.79  E-value=0.0001  Score=64.66  Aligned_cols=99  Identities=18%  Similarity=0.165  Sum_probs=70.1

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~  186 (246)
                      ...++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.. + -.+-                
T Consensus        81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~----------------  142 (255)
T 3p5m_A           81 ANRVVRAITSLPKPVIAGVHGAAVGFGCSLALAC--DLVVAAPASYFQLAFTRVGLMPDGGASA----------------  142 (255)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECGGGGGTCCCCTTHHH----------------
T ss_pred             HHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHC--CEEEEcCCcEEeCcccccCcCCCccHHH----------------
Confidence            3467888889999999999999999999999999  479999999987654443321 1 1111                


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       .+.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       143 -~l~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  181 (255)
T 3p5m_A          143 -LLPLLIG--RARTSRMAMTAEKISAATAFEWGMISHITSAD  181 (255)
T ss_dssp             -HTHHHHC--HHHHHHHHHHCCCEEHHHHHHTTSCSEECCTT
T ss_pred             -HHHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCHH
Confidence             1111112  22223444446789999999999999998654

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=97.77  E-value=0.00011  Score=65.64  Aligned_cols=100  Identities=15%  Similarity=0.229  Sum_probs=69.7

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|..-..--..               .+
T Consensus       105 ~~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~p~~g~~~---------------~L  167 (277)
T 4di1_A          105 LEAIDAVAAIPKPTVAAVTGYALGAGLTLALAA--DWRVSGDNVKFGATEILAGLIPGGGGMG---------------RL  167 (277)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCTTHHH---------------HH
T ss_pred             HHHHHHHHhCCCCEEEEECCeEehhHHHHHHhC--CEEEEcCCCEEECcccccCCCCCchHHH---------------HH
Confidence            456777888899999999999999999999999  4799999999876544444321110010               11


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       168 ~r~vG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  204 (277)
T 4di1_A          168 TRVVG--SSRAKELVFSGRFFDAEEALALGLIDDMVAPD  204 (277)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEEeChh
Confidence            11222  22333444446889999999999999998653

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=97.75  E-value=0.0002  Score=63.25  Aligned_cols=98  Identities=15%  Similarity=0.177  Sum_probs=69.3

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.....--..               .+
T Consensus        89 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l  151 (266)
T 3fdu_A           89 FVLLKSAARLSKPLIIAVKGVAIGIGVTILLQA--DLVFADNTALFQIPFVSLGLSPEGGASQ---------------LL  151 (266)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHGGGGC--SEEEECTTCEEECCTTTTTCCCCTTHHH---------------HH
T ss_pred             HHHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEEcCCCEEECchhhhCCCCcchHHH---------------HH
Confidence            456778888999999999999999999999999  4799999999876555444321110100               11


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY  226 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~  226 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+
T Consensus       152 ~r~vG--~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~  186 (266)
T 3fdu_A          152 VKQAG--YHKAAELLFTAKKFNAETALQAGLVNEIVE  186 (266)
T ss_dssp             HHHHC--HHHHHHHHHHCCEECHHHHHHTTSCSEECS
T ss_pred             HHHhC--HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH
Confidence            11222  223334444467899999999999999986

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=97.74  E-value=6.1e-05  Score=66.22  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             HHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc---ccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       113 yd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~---~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ++.+...+.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+.....|.   .|-..-                  +
T Consensus        90 ~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------l  149 (260)
T 1mj3_A           90 WDHITRIKKPVIAAVNGYALGGGCELAMMC--DIIYAGEKAQFGQPEILLGTIPGAGGTQR------------------L  149 (260)
T ss_dssp             GGGGGGCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSTTTH------------------H
T ss_pred             HHHHHhCCCCEEEEECCEEEeHHHHHHHhC--CEEEEcCCCEEeCcccccCCCCCccHHHH------------------H
Confidence            445666788999999999999999999999  48999999998765554442   121111                  1


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       150 ~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  185 (260)
T 1mj3_A          150 TRAVG--KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV  185 (260)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECT
T ss_pred             HHHhC--HHHHHHHHHcCCcCCHHHHHHcCCccEEeCh
Confidence            22222  2233444444678899999999999999865

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=97.74  E-value=0.00017  Score=63.85  Aligned_cols=96  Identities=15%  Similarity=0.150  Sum_probs=70.1

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc---cChHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~---G~a~di~i~a~el~~~~~~i~~  187 (246)
                      .+++.|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+.....|..   |-..-                 
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~-----------------  158 (273)
T 2uzf_A           98 DLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVC--DLTIAADNAIFGQTGPKVGSFDAGYGSGY-----------------  158 (273)
T ss_dssp             HHHHHHHHSSSCEEEEECEEEETHHHHHHHHS--SEEEEETTCEEECCGGGTTCCCCSTTTHH-----------------
T ss_pred             HHHHHHHhCCCCEEEEECCEEeehhHHHHHhC--CEEEEcCCCEEECchhhhCCCCchhHHHH-----------------
Confidence            56677888899999999999999999999999  489999999987655444421   11111                 


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       +.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       159 -l~~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  196 (273)
T 2uzf_A          159 -LARIVG--HKKAREIWYLCRQYNAQEALDMGLVNTVVPLE  196 (273)
T ss_dssp             -HHHHHC--HHHHHHHHHTCCCEEHHHHHHHTSSSEEECGG
T ss_pred             -HHHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCccccCHH
Confidence             122222  22334555567899999999999999998643

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=97.74  E-value=0.00017  Score=62.50  Aligned_cols=100  Identities=19%  Similarity=0.272  Sum_probs=71.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|.+++  +.|++.++++|-+-....|..  +.+...             ..+
T Consensus        85 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~--~~~~g~-------------~~l  147 (233)
T 3r6h_A           85 FELSYRLLSYPKPVVIACTGHAIAMGAFLLCSG--DHRVAAHAYNVQANEVAIGMT--IPYAAM-------------EVL  147 (233)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHTTS--SEEEECTTCCEECCGGGGTCC--CCHHHH-------------HHH
T ss_pred             HHHHHHHHhCCCCEEEEECCcchHHHHHHHHhC--CEEEEeCCcEEECchhhhCCC--CCccHH-------------HHH
Confidence            456778888899999999999999999999999  479999999987644443332  111100             012


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .++.|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       148 ~~~~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  184 (233)
T 3r6h_A          148 KLRLT--PSAYQQAAGLAKTFFGETALAAGFIDEISLPE  184 (233)
T ss_dssp             HHHSC--HHHHHHHHHSCCEECHHHHHHHTSCSEECCGG
T ss_pred             HHHhC--HHHHHHHHHcCCcCCHHHHHHcCCCcEeeCHH
Confidence            22222  23344555567899999999999999998653

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=97.74  E-value=0.00025  Score=61.35  Aligned_cols=100  Identities=21%  Similarity=0.283  Sum_probs=71.6

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC-ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn-s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-+++++  +-|++.++ ++|-+-....|..  +.+...             ..
T Consensus        84 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~Gl~--p~~~g~-------------~~  146 (232)
T 3ot6_A           84 STLARRMLSHPFPIIVACPGHAVAKGAFLLLSA--DYRIGVAGPFSIGLNEVQIGMT--MHHAGI-------------EL  146 (232)
T ss_dssp             HHHHHHHHTCSSCEEEECCEEEETHHHHHHTTS--SEEEEECSSCCEECCTTTTTCC--CCHHHH-------------HH
T ss_pred             HHHHHHHHcCCCCEEEEECCEeehHHHHHHHHC--CEEEEeCCCcEEECcccccCCC--CchhHH-------------HH
Confidence            456778888899999999999999999999999  47999998 7887644444432  111110             01


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..+.  ....-.+++-.+..++|+||+++||||+|.+..
T Consensus       147 l~~~i--g~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~  184 (232)
T 3ot6_A          147 ARDRL--RKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVE  184 (232)
T ss_dssp             HHHHS--CHHHHHHHHTSCCEECHHHHHHHTSCSEEECTT
T ss_pred             HHHHh--CHHHHHHHHHcCCccCHHHHHHCCCCCEecCHH
Confidence            12222  234455566668899999999999999999753

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=97.72  E-value=9.3e-05  Score=65.30  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ...++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+.....|.....--..               .
T Consensus        91 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~  153 (265)
T 3kqf_A           91 IRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC--DFRIAAESASLGLTETTLAIIPGAGGTQ---------------R  153 (265)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSSHHH---------------H
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCcEEECcccccCcCCCccHHH---------------H
Confidence            3456777888899999999999999999999999  5899999999876555444321110000               0


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-.+..++++||+++||||+|.+..
T Consensus       154 L~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3kqf_A          154 LPRLIG--VGRAKELIYTGRRISAQEAKEYGLVEFVVPVH  191 (265)
T ss_dssp             HHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEEeCHH
Confidence            111112  22233344446789999999999999998643

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=97.72  E-value=0.00011  Score=64.26  Aligned_cols=100  Identities=12%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|...+.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+.....|..-..--...               +
T Consensus        89 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~---------------l  151 (256)
T 3qmj_A           89 RGLIKALAGFPKPLICAVNGLGVGIGATILGYA--DLAFMSSTARLKCPFTSLGVAPEAASSYL---------------L  151 (256)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHGGGGC--SEEEEETTCEEECCGGGC---CCTTHHHH---------------H
T ss_pred             HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhC--CEEEEeCCCEEECcccccCCCCCccHHHH---------------H
Confidence            456777888899999999999999999999999  47999999998765444432111000100               0


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       152 ~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  188 (256)
T 3qmj_A          152 PQLVG--RQNAAWLLMSSEWIDAEEALRMGLVWRICSPE  188 (256)
T ss_dssp             HHHHH--HHHHHHHHHSCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEEeCHh
Confidence            11111  11223444457889999999999999998653

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=97.71  E-value=0.00011  Score=64.69  Aligned_cols=98  Identities=15%  Similarity=0.192  Sum_probs=69.7

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.. + -.+-                 
T Consensus        88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------  148 (261)
T 3pea_A           88 QVTFERVEKCSKPVIAAIHGAALGGGLEFAMSC--HMRFATESAKLGLPELTLGLIPGFAGTQ-----------------  148 (261)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSSHHH-----------------
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECcccccCcCCCccHHH-----------------
Confidence            346778889999999999999999999999999  479999999987654444432 1 1111                 


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       149 ~L~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  187 (261)
T 3pea_A          149 RLPRYVG--KAKACEMMLTSTPITGAEALKWGLVNGVFAEE  187 (261)
T ss_dssp             HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCHH
Confidence            1111122  23333444446789999999999999998653

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=97.69  E-value=0.00019  Score=63.00  Aligned_cols=98  Identities=15%  Similarity=0.142  Sum_probs=67.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.....--..               .+.
T Consensus        92 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~  154 (261)
T 2gtr_A           92 NFVNTFIQFKKPIIVAVNGPAIGLGASILPLC--DVVWANEKAWFQTPYTTFGQSPDGCSTV---------------MFP  154 (261)
T ss_dssp             HHHHHHHHCCSCEEEEECSCEETHHHHTGGGS--SEEEEETTCEEECCTTTTTCCCCTTHHH---------------HHH
T ss_pred             HHHHHHHhCCCCEEEEECCeEeeHHHHHHHhC--CEEEEcCCCEEeCchhccCCCccchHHH---------------HHH
Confidence            34566777889999999999999999999999  4799999999876555444321110000               111


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       155 ~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  189 (261)
T 2gtr_A          155 KIMG--GASANEMLLSGRKLTAQEACGKGLVSQVFWP  189 (261)
T ss_dssp             HHHC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG
T ss_pred             HHcC--HHHHHHHHHcCCCCCHHHHHHCCCcccccCh
Confidence            2222  2333344444677999999999999999854

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.67  E-value=7.4e-05  Score=73.00  Aligned_cols=133  Identities=18%  Similarity=0.281  Sum_probs=86.0

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCcee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTI  155 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~i  155 (246)
                      .+.-.-||...+|+||...  .-|.-|-+.++-.+.+.+...+.|+.|+++|.|+|.|++.+++..  .+..++.||+++
T Consensus       378 a~~~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i  457 (548)
T 2bzr_A          378 CDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQI  457 (548)
T ss_dssp             HHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEE
T ss_pred             HHhcCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEE
Confidence            3445689999999999653  222336678888888999999999999999999999887776511  257889999999


Q ss_pred             eeecCCcCc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          156 MIKQPIGRI----EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       156 MiHqp~~~~----~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      -+-.|.+..    .......+..-++....++.+.+-|.                +.+.+|..+.+.|+||.|+++.
T Consensus       458 ~Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~----------------~~~~~p~~~a~~g~iD~II~p~  518 (548)
T 2bzr_A          458 AVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYE----------------DTLVNPYVAAERGYVGAVIPPS  518 (548)
T ss_dssp             ESSCHHHHHHHHTCCC----------CHHHHHHHHHHHH----------------HHHSBSHHHHHTTSSSEECCGG
T ss_pred             EecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHH----------------HhhCCHHHHHhcCCCceeeCHH
Confidence            887776431    11100000000011122222222221                2345677899999999999863

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=97.66  E-value=0.00018  Score=63.89  Aligned_cols=100  Identities=18%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cChHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.. ...--..               .
T Consensus       103 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~p~~g~~~---------------~  165 (279)
T 3g64_A          103 GQVVRAVRECPFPVIAALHGVAAGAGAVLALAA--DFRVADPSTRFAFLFTRVGLSGGDMGAAY---------------L  165 (279)
T ss_dssp             HHHHHHHHHSSSCEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECCGGGGTCCSCCTTHHH---------------H
T ss_pred             HHHHHHHHhCCCCEEEEEcCeeccccHHHHHhC--CEEEEeCCCEEeCchhhcCCCCCchhHHH---------------H
Confidence            456677888899999999999999999999999  479999999987654444433 1110100               1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-.+..++++||+++||||+|.+..
T Consensus       166 l~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  203 (279)
T 3g64_A          166 LPRVVG--LGHATRLLMLGDTVRAPEAERIGLISELTEEG  203 (279)
T ss_dssp             HHHHHC--HHHHHHHHHHCCCEEHHHHHHHTCCSEECCTT
T ss_pred             HHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEecCch
Confidence            111122  22333444446789999999999999998654

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=97.66  E-value=0.00026  Score=62.99  Aligned_cols=99  Identities=16%  Similarity=0.130  Sum_probs=70.1

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|+++++  .|++.++++|-+-....|..-..--..               .+.
T Consensus       112 ~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~  174 (280)
T 2f6q_A          112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFD--AVYASDRATFHTPFSHLGQSPEGCSSY---------------TFP  174 (280)
T ss_dssp             HHHHHHHSCCSCEEEEECSCEETHHHHGGGGCS--EEEEETTCEEECCTGGGTCCCCTTHHH---------------HHH
T ss_pred             HHHHHHHcCCCCEEEEECCeeehHHHHHHHhCC--EEEECCCcEEECchHhhCCCCcccHHH---------------HHH
Confidence            456778888999999999999999999999994  799999999876544434321110000               122


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       175 r~vG--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~  210 (280)
T 2f6q_A          175 KIMS--PAKATEMLIFGKKLTAGEACAQGLVTEVFPDS  210 (280)
T ss_dssp             HHHC--HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             HHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceEECHH
Confidence            2222  23344555567889999999999999998653

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=97.63  E-value=0.00012  Score=64.81  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      ++..|..++.||.+.+-|.|.+.|.-|.++++  .|++.++++|.+.....|.....--               ...+.+
T Consensus        99 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~r  161 (275)
T 1dci_A           99 TFTVIEKCPKPVIAAIHGGCIGGGVDLISACD--IRYCTQDAFFQVKEVDVGLAADVGT---------------LQRLPK  161 (275)
T ss_dssp             HHHHHHHSSSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGGGGTSCCCSSH---------------HHHGGG
T ss_pred             HHHHHHhCCCCEEEEECCeeeHHHHHHHHhCC--EEEEeCCCEEeCcccccCCCCCccH---------------HHHHHH
Confidence            45667788899999999999999999999994  7999999998765544443211000               111334


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ..|.+ ..-.+++-.+..++|+||+++||||+|.+.
T Consensus       162 ~vG~~-~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~  196 (275)
T 1dci_A          162 VIGNR-SLVNELTFTARKMMADEALDSGLVSRVFPD  196 (275)
T ss_dssp             TCSCH-HHHHHHHHHCCEEEHHHHHHHTSSSEEESS
T ss_pred             HhCcH-HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Confidence            44431 333444445678999999999999999865

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=97.63  E-value=0.0002  Score=62.95  Aligned_cols=100  Identities=12%  Similarity=0.102  Sum_probs=70.3

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|+++++  -|++.++++|.+-....|..-..--..               .+
T Consensus        85 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l  147 (258)
T 4fzw_A           85 PQLWARLQAFNKPLIAAVNGYALGAGCELALLCD--VVVAGENARFGLPEITLGIMPGAGGTQ---------------RL  147 (258)
T ss_dssp             HHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGGGGTCCCCSSHHH---------------HH
T ss_pred             HHHHHHHHHCCCCEEEEEcCcceeeeeEeecccc--eEEECCCCEEECcccCCCcCCCchHHH---------------HH
Confidence            4577888899999999999999999999999994  799999999876544444321111110               01


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-.+..++++||+++||||+|.+..
T Consensus       148 ~r~vG--~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~  184 (258)
T 4fzw_A          148 IRSVG--KSLASKMVLSGESITAQQAQQAGLVSDVFPSD  184 (258)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred             HHHhC--HHHHHHHHHcCCcCcHHHHHHCCCeeEEeCch
Confidence            11112  22233444446889999999999999998754

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=97.62  E-value=0.00026  Score=63.03  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|.. | -.+-                 
T Consensus        96 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------  156 (275)
T 3hin_A           96 HRVFDKIQYCRVPVIAALKGAVIGGGLELACAA--HIRVAEASAYYALPEGSRGIFVGGGGSV-----------------  156 (275)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSHHH-----------------
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECchhccCCCCCccHHH-----------------
Confidence            456777888899999999999999999999999  479999999987655444431 1 1111                 


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       157 ~L~r~vG--~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~  195 (275)
T 3hin_A          157 RLPRLIG--VARMADMMLTGRVYSAAEGVVHGFSQYLIENG  195 (275)
T ss_dssp             HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEESSS
T ss_pred             HHHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCCEEeChh
Confidence            1122222  23334444457889999999999999999654

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=97.61  E-value=0.0003  Score=61.26  Aligned_cols=95  Identities=16%  Similarity=0.084  Sum_probs=66.2

Q ss_pred             HHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       112 Iyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ++..|...+.||.+.+-|.|.+.|.-|.+++  +.|++.++++|-+.....|.. + -.+-                 .+
T Consensus        82 ~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l  142 (243)
T 2q35_A           82 LSGLILDCEIPIIAAMQGHSFGGGLLLGLYA--DFVVFSQESVYATNFMKYGFTPVGATSL-----------------IL  142 (243)
T ss_dssp             CHHHHHTCCSCEEEEECSEEETHHHHHHHTS--SEEEEESSSEEECCHHHHTSCCCSSHHH-----------------HH
T ss_pred             HHHHHHhCCCCEEEEEcCccccchHHHHHhC--CEEEEeCCCEEECCccccCCCCcchHHH-----------------HH
Confidence            4567778889999999999999999999999  489999999876543332321 1 1111                 12


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..|  ...-.+++-.+..++++||+++||||+|.+.
T Consensus       143 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  178 (243)
T 2q35_A          143 REKLG--SELAQEMIYTGENYRGKELAERGIPFPVVSR  178 (243)
T ss_dssp             HHHHC--HHHHHHHHHHCCCEEHHHHHHTTCSSCEECH
T ss_pred             HHHhC--HHHHHHHHHcCCCCCHHHHHHcCCCCEecCh
Confidence            22222  2233344444678999999999999999854

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=97.61  E-value=0.00014  Score=64.51  Aligned_cols=101  Identities=12%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      .....++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|.....--.               
T Consensus        94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~---------------  156 (264)
T 3he2_A           94 DRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQC--DLRVVAPDAFFQFPTSKYGLALDNWSI---------------  156 (264)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHS--SEEEECTTCEEECTHHHHTCCCCHHHH---------------
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhC--CEEEEcCCCEEECcccccCcCCcchHH---------------
Confidence            345567788888999999999999999999999999  479999999976533333322111000               


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY  226 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~  226 (246)
                      ..+.+..|  ...-.+++-.+..++|+||+++||||+|.+
T Consensus       157 ~~L~r~vG--~~~A~~llltG~~i~A~eA~~~GLV~~v~~  194 (264)
T 3he2_A          157 RRLSSLVG--HGRARAMLLSAEKLTAEIALHTGMANRIGT  194 (264)
T ss_dssp             HHHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEECC
T ss_pred             HHHHHHhC--HHHHHHHHHcCCCccHHHHHHCCCeEEEec
Confidence            11222222  223344444578899999999999999964

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=97.61  E-value=0.00031  Score=61.30  Aligned_cols=102  Identities=16%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      ....++..|..++.||.+.+-|.|.+.|.-|+++|  +-|++.++++|.+-....|..-..--..               
T Consensus        79 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lGl~p~~g~~~---------------  141 (254)
T 3hrx_A           79 RYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWG--DLRLAAVGASFTTAFVRIGLVPDSGLSF---------------  141 (254)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTC--SEEEEETTCEEECCGGGGTCCCCTTHHH---------------
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhcc--ceeeEcCCCEEEchhhCcCcCCcccHHH---------------
Confidence            34567788888999999999999999999999999  5799999999866444434321110000               


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       142 ~L~r~vG--~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  180 (254)
T 3hrx_A          142 LLPRLVG--LAKAQELLLLSPRLSAEEALALGLVHRVVPAE  180 (254)
T ss_dssp             HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHHHhC--cchHHHHhhcCcccCHHHHHHCCCeEEecCcH
Confidence            0111111  22223333336779999999999999999754

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=97.59  E-value=0.00027  Score=63.34  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=68.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|+++++  -|++.++++|.+-....|.. + -.+-                 .
T Consensus       110 ~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~p~~g~~~-----------------~  170 (291)
T 2fbm_A          110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD--LVWANEKAWFQTPYTTFGQSPDGCSSI-----------------T  170 (291)
T ss_dssp             HHHHHHHHCCSCEEEEECSCEETHHHHTGGGSS--EEEEETTCEEECCHHHHTCCCCTTHHH-----------------H
T ss_pred             HHHHHHHhCCCCEEEEECCeeecHHHHHHHhCC--EEEEeCCCEEECcHHhcCCCCcccHHH-----------------H
Confidence            345667778899999999999999999999994  79999999886543333321 1 1110                 1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       171 L~r~vG--~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~  208 (291)
T 2fbm_A          171 FPKMMG--KASANEMLIAGRKLTAREACAKGLVSQVFLTG  208 (291)
T ss_dssp             HHHHHC--HHHHHHHHTSCCEEEHHHHHHTTSCSEEECST
T ss_pred             HHHHHh--HHHHHHHHHcCCccCHHHHHHCCCcceecChh
Confidence            222222  23445555567889999999999999998654

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=97.58  E-value=0.00023  Score=62.64  Aligned_cols=98  Identities=13%  Similarity=0.116  Sum_probs=69.0

Q ss_pred             HHHHh-c--ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          112 IYDVM-G--YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       112 Iyd~m-~--~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ++..| .  .++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..-..--..               .
T Consensus        91 ~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~  153 (265)
T 3rsi_A           91 IGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQT--DIRVSDEHATFGLPEVQRGLVPGAGSMV---------------R  153 (265)
T ss_dssp             HHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTC--SEEEEETTCEEECGGGGGTCCCTTTHHH---------------H
T ss_pred             HHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHC--CEEEecCCCEEECchhccCCCCCccHHH---------------H
Confidence            77788 7  8889999999999999999999999  4799999999876444433321110000               1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       154 l~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3rsi_A          154 LKRQIP--YTKAMEMILTGEPLTAFEAYHFGLVGHVVPAG  191 (265)
T ss_dssp             HHHHSC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEESTT
T ss_pred             HHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEecChh
Confidence            112222  23334444457889999999999999998654

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=97.58  E-value=0.00023  Score=62.70  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=71.5

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+-....|..+ .--..               .+
T Consensus        94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~~-~g~~~---------------~l  155 (263)
T 3l3s_A           94 SALMLDLAHCPKPTIALVEGIATAAGLQLMAAC--DLAYASPAARFCLPGVQNGGFC-TTPAV---------------AV  155 (263)
T ss_dssp             HHHHHHHHTCSSCEEEEESSEEETHHHHHHHHS--SEEEECTTCEEECCTTTTTSCC-HHHHH---------------HH
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHC--CEEEecCCCEEeCchhccCCCC-ccHHH---------------HH
Confidence            456777888899999999999999999999999  4799999999876554444432 11100               12


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..  ....-.+++-.+..++|+||+++||||+|.+.
T Consensus       156 ~r~v--G~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  191 (263)
T 3l3s_A          156 SRVI--GRRAVTEMALTGATYDADWALAAGLINRILPE  191 (263)
T ss_dssp             HTTS--CHHHHHHHHHHCCEEEHHHHHHHTSSSEECCH
T ss_pred             HHHc--CHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence            2222  33344455555788999999999999999864

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=97.58  E-value=0.00014  Score=65.12  Aligned_cols=98  Identities=14%  Similarity=0.044  Sum_probs=70.8

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|+++++  .|++.++++|.+-....|..   .+..-            .. +
T Consensus       116 ~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~---p~~g~------------~~-L  177 (287)
T 2vx2_A          116 SKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCD--IAVASDKSSFATPGVNVGLF---CSTPG------------VA-L  177 (287)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGGGGTCC---CHHHH------------HH-H
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCC--EEEEcCCCEEECchhhhCCC---CchHH------------HH-H
Confidence            4567778888999999999999999999999994  79999999987655444332   11110            01 2


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..|  ...-.+++-....++|+||+++||||+|.+.
T Consensus       178 ~r~vG--~~~A~~llltg~~i~A~eA~~~GLv~~vv~~  213 (287)
T 2vx2_A          178 ARAVP--RKVALEMLFTGEPISAQEALLHGLLSKVVPE  213 (287)
T ss_dssp             HTTSC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred             HHHhh--HHHHHHHHHhCCCCCHHHHHHCCCcceecCH
Confidence            33333  3344455545678999999999999999864

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=97.57  E-value=0.00022  Score=63.32  Aligned_cols=99  Identities=18%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|+++++  -|++.++++|-+-....|..-..--..               .+.
T Consensus       102 ~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~  164 (274)
T 4fzw_C          102 PLVRRLAKLPKPVICAVNGVAAGAGATLALGGD--IVIAARSAKFVMAFSKLGLIPDCGGTW---------------LLP  164 (274)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSS--EEEEETTCEEECCGGGTTCCCTTTHHH---------------HHH
T ss_pred             HHHHHHHHCCCCEEEEECCceeecCceeeeccc--eEEECCCCEEECcccCcccCCCccHHH---------------HHH
Confidence            466778888999999999999999999999994  799999999876555444321111110               011


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       165 r~vG--~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  200 (274)
T 4fzw_C          165 RVAG--RARAMGLALLGNQLSAEQAHEWGMIWQVVDDE  200 (274)
T ss_dssp             HHTC--HHHHHHHHHHCCCEEHHHHHHTTSSSEEECGG
T ss_pred             HHhh--HHHHHHHHHhCCcCCHHHHHHCCCceEEeChH
Confidence            1122  22233344446789999999999999998654

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=97.57  E-value=0.00015  Score=63.88  Aligned_cols=98  Identities=11%  Similarity=0.016  Sum_probs=66.7

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+.....|.....--.               ..+.
T Consensus        95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~  157 (264)
T 1wz8_A           95 DLVLGPLNFPRPVVAAVEKVAVGAGLALALAA--DIAVVGKGTRLLDGHLRLGVAAGDHAV---------------LLWP  157 (264)
T ss_dssp             HHHHHHHHSSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTSCCTTTHH---------------HHTH
T ss_pred             HHHHHHHcCCCCEEEEECCeeechhHHHHHhC--CEEEecCCCEEeCchhhcCcCCCccHH---------------HHHH
Confidence            44566777889999999999999999999999  489999999886643333321100000               0112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       158 r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  192 (264)
T 1wz8_A          158 LLVG--MAKAKYHLLLNEPLTGEEAERLGLVALAVED  192 (264)
T ss_dssp             HHHC--HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG
T ss_pred             HHhC--HHHHHHHHHcCCCCCHHHHHHCCCceeecCh
Confidence            2222  2233444444678999999999999999864

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=97.57  E-value=0.00024  Score=63.55  Aligned_cols=101  Identities=14%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccC-hHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ-ATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~-a~di~i~a~el~~~~~~i~~  187 (246)
                      ...++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|..-. .--..               
T Consensus       112 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~---------------  174 (290)
T 3sll_A          112 LDEVILTLRRMHQPVIAAINGAAIGGGLCLALAC--DVRVASQDAYFRAAGINNGLTASELGLSY---------------  174 (290)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECTTTTTTSCSCCTTHHH---------------
T ss_pred             HHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHC--CEEEEeCCCEEECchhccCcCCCcccHHH---------------
Confidence            3467778888899999999999999999999999  47999999998664443332111 11100               


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       175 ~L~r~vG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  213 (290)
T 3sll_A          175 LLPRAIG--TSRASDIMLTGRDVDADEAERIGLVSRKVASE  213 (290)
T ss_dssp             HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEEeChh
Confidence            1111222  22233444446789999999999999998654

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=97.57  E-value=0.00014  Score=64.43  Aligned_cols=97  Identities=13%  Similarity=0.125  Sum_probs=67.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~i  188 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|.. + -.+-                 .
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~  158 (272)
T 3qk8_A           98 DLVLNLVNLDKPVVSAIRGPAVGAGLVVALLA--DISVASATAKIIDGHTKLGVAAGDHAAI-----------------C  158 (272)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEEHHHHHHHHHS--SEEEEETTCEEECCHHHHTSCSCSSHHH-----------------H
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECchhccCCCCCccHHH-----------------H
Confidence            45667788899999999999999999999999  479999999987543333321 1 1111                 0


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       159 L~r~vG--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~  196 (272)
T 3qk8_A          159 WPLLVG--MAKAKYYLLTCETLSGEEAERIGLVSTCVDDD  196 (272)
T ss_dssp             THHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             HHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEeeCHh
Confidence            111112  22333444446789999999999999998653

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.56  E-value=0.00014  Score=70.73  Aligned_cols=130  Identities=20%  Similarity=0.339  Sum_probs=83.8

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCcee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTI  155 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~i  155 (246)
                      .+...-||...+|+||...  .-|..|....+-.+++.+...+.|+.|+++|.|+|.|++-+++..  .+..|+.|||++
T Consensus       361 a~~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~  440 (527)
T 1vrg_A          361 LDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEI  440 (527)
T ss_dssp             HHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEE
T ss_pred             HhhcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeE
Confidence            4455789999999999653  123446677777888888889999999999999998887776511  246788999998


Q ss_pred             eeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-Hhc--CCCccCHHHHHHcCCceEEccCC
Q 025916          156 MIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEA-DIR--RPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       156 MiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~-~~~--rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      -.=.|.+.     ..|- +.+++.+.             ...++..+ ..+  ++.+.+|..+.+.|+||.|+++.
T Consensus       441 ~Vm~pega-----a~Il-~r~~~~~~-------------~d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~p~  497 (527)
T 1vrg_A          441 AVMGPEGA-----ANII-FKREIEAS-------------SNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPR  497 (527)
T ss_dssp             ESSCHHHH-----HHHH-THHHHHHS-------------SCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGG
T ss_pred             EecCHHHH-----HHHH-hhhhhhcc-------------cCHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeCHH
Confidence            65444321     1110 00111110             01111111 111  13457788899999999999863

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=97.55  E-value=0.00035  Score=61.18  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=71.9

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+.....|..+- +                 ..+
T Consensus        88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~pg-~-----------------~~l  147 (254)
T 3isa_A           88 EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAAC--KWRYCTPEAGFRMPGLKFGLVLG-T-----------------RRF  147 (254)
T ss_dssp             HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECCGGGGTCCCS-H-----------------HHH
T ss_pred             HHHHHHHHhCCCCEEEEECCeEeecchhHHHhC--CEEEEcCCCEEECchhccCccHH-H-----------------HHH
Confidence            346677888899999999999999999999999  47999999998765555454431 0                 112


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       148 ~~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  184 (254)
T 3isa_A          148 RDIVG--ADQALSILGSARAFDADEARRIGFVRDCAAQA  184 (254)
T ss_dssp             HHHHC--HHHHHHHHTTTCEEEHHHHHHTTSSSEECCGG
T ss_pred             HHHcC--HHHHHHHHHhCCCCcHHHHHHCCCccEEeChh
Confidence            22333  23444556667889999999999999998653

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=97.52  E-value=0.00032  Score=62.27  Aligned_cols=99  Identities=14%  Similarity=0.039  Sum_probs=68.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEec-cCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~-Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .++..|...+.||.+.+-|.|.+.|.-|+++++  -|++. ++++|-+-....|..-..--..               .+
T Consensus       103 ~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~~ia~~~~a~f~~pe~~lGl~p~~g~~~---------------~l  165 (280)
T 1pjh_A          103 YVTDAFIKHSKVLICCLNGPAIGLSAALVALCD--IVYSINDKVYLLYPFANLGLITEGGTTV---------------SL  165 (280)
T ss_dssp             HHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSS--EEEESSTTCEEECCHHHHTCCCCTTHHH---------------HH
T ss_pred             HHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCC--EEEEeCCCCEEeCchhhcCCCCCccHHH---------------HH
Confidence            455677788999999999999999999999994  79999 9998865433333211000000               12


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       166 ~r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~  202 (280)
T 1pjh_A          166 PLKFG--TNTTYECLMFNKPFKYDIMCENGFISKNFNMP  202 (280)
T ss_dssp             HHHHC--HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCC
T ss_pred             HHHhC--HHHHHHHHHhCCCCCHHHHHHCCCcceeeCCc
Confidence            22223  23344455557889999999999999998653

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=97.51  E-value=0.00024  Score=62.64  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=68.9

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc---ccChHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~---~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|+++++  .|++.++++|-+-....|.   .|-..-                 
T Consensus        91 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------  151 (263)
T 3moy_A           91 SGWDSLTQVRKPIVAAVAGYALGGGCELAMLCD--LVIAADTARFGQPEITLGILPGLGGTQR-----------------  151 (263)
T ss_dssp             HHHHHHTTCCSCEEEEECBEEETHHHHHHHHSS--EEEEETTCEEECGGGGGTCCCSSSTTTH-----------------
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHHCC--EEEecCCCEEeCcccccCCCCchhHHHH-----------------
Confidence            367788889999999999999999999999994  7999999998765444332   122211                 


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       +.+..|  ...-.+++-.+..++++||+++||||+|.+..
T Consensus       152 -l~~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  189 (263)
T 3moy_A          152 -LTRAVG--KAKAMDLCLTGRSLTAEEAERVGLVSRIVPAA  189 (263)
T ss_dssp             -HHHHHC--HHHHHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred             -HHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCch
Confidence             112222  22333444447899999999999999998653

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.51  E-value=0.00012  Score=71.08  Aligned_cols=129  Identities=19%  Similarity=0.268  Sum_probs=83.9

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCcee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTI  155 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~i  155 (246)
                      .+.-.-||...+|.||...  .-|.-|-+.++-.+.+.+...+.|+.|+++|.++|.|++-+++..  .+..|+.||+++
T Consensus       357 ~~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~  436 (523)
T 1on3_A          357 CDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEI  436 (523)
T ss_dssp             HHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEE
T ss_pred             HHhcCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeE
Confidence            4455789999999999663  223346777888888899999999999999999998887776611  246788999998


Q ss_pred             eeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH----HHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          156 MIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI----EADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       156 MiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I----~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      -.=.|.+..     .|- +.+++.+.             ...++.    .+..+ +.+.+|..+.+.|+||.|+++.
T Consensus       437 ~Vm~pegaa-----~Il-~r~~~~~~-------------~d~~~~~~~~~~~y~-~~~~~p~~~a~~g~iD~II~p~  493 (523)
T 1on3_A          437 AVMGAEGAA-----NVI-FRKEIKAA-------------DDPDAMRAEKIEEYQ-NAFNTPYVAAARGQVDDVIDPA  493 (523)
T ss_dssp             ESSCHHHHH-----HHH-THHHHHHS-------------SCHHHHHHHHHHHHH-HHHSSHHHHHHTTSSSEECCGG
T ss_pred             EecCHHHHH-----HHH-hhhhhhcc-------------cCHHHHHHHHHHHHH-HhhCCHHHHHhcCCCCEeeCHH
Confidence            654443211     110 00011110             011111    11111 2456788899999999999863

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=97.50  E-value=0.00019  Score=64.20  Aligned_cols=99  Identities=10%  Similarity=0.087  Sum_probs=70.8

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|+++++  .|++.++++|.+-....|..+ .--..               .+
T Consensus       109 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~lGl~~-~g~~~---------------~L  170 (286)
T 3myb_A          109 TDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCD--LAVATRDARFAVSGINVGLFC-STPGV---------------AL  170 (286)
T ss_dssp             HHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSS--EEEEETTCEEECGGGGGTCCC-HHHHH---------------HH
T ss_pred             HHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCC--EEEEcCCCEEECcccccCCCC-chHHH---------------HH
Confidence            4566777888999999999999999999999994  799999999876554444431 11100               12


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..  ....-.+++-.+..++|+||+++||||+|.+..
T Consensus       171 ~r~v--G~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~  207 (286)
T 3myb_A          171 SRNV--GRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPK  207 (286)
T ss_dssp             TTTS--CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             HHHc--CHHHHHHHHHcCCCCCHHHHHHCCCCcEecCHH
Confidence            2222  233444555456789999999999999998643

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=97.49  E-value=0.00022  Score=63.57  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=67.1

Q ss_pred             HHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKH  192 (246)
Q Consensus       113 yd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~  192 (246)
                      +..|..++.||.+.+-|.|.+.|.-|+++++  .|++.++++|.+-....|..-..--.               ..+.+.
T Consensus       108 ~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~p~~g~~---------------~~L~r~  170 (278)
T 3h81_A          108 WGKLAAVRTPTIAAVAGYALGGGCELAMMCD--VLIAADTAKFGQPEIKLGVLPGMGGS---------------QRLTRA  170 (278)
T ss_dssp             GHHHHTCCSCEEEEECBEEETHHHHHHHHSS--EEEEETTCEEECGGGGGTCCCCSSHH---------------HHHHHH
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHHCC--EEEEcCCCEEECchhhcCcCCCccHH---------------HHHHHH
Confidence            4567778899999999999999999999994  79999999987654444431110000               011122


Q ss_pred             hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          193 FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       193 Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       171 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~  204 (278)
T 3h81_A          171 IG--KAKAMDLILTGRTMDAAEAERSGLVSRVVPAD  204 (278)
T ss_dssp             HC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             hC--HHHHHHHHHhCCCcCHHHHHHCCCccEEeChh
Confidence            22  22333444446789999999999999998654

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=97.45  E-value=0.00035  Score=61.54  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=65.6

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+-....|..-..--..               .+
T Consensus        90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l  152 (269)
T 1nzy_A           90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLAS--DMAICADSAKFVCAWHTIGIGNDTATSY---------------SL  152 (269)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCTTHHH---------------HH
T ss_pred             HHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEeCcccccCCCCCccHHH---------------HH
Confidence            345667778889999999999999999999999  4899999998865433333211000000               01


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..|  ...-.+++-.+..++++||+++||||+|.+.
T Consensus       153 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  188 (269)
T 1nzy_A          153 ARIVG--MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK  188 (269)
T ss_dssp             HHHHH--HHHHHHHHHHCCCBCHHHHHHHTSCSCEECH
T ss_pred             HHHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence            11111  1122333334677999999999999999854

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=97.43  E-value=0.00022  Score=62.91  Aligned_cols=98  Identities=17%  Similarity=0.121  Sum_probs=65.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.....--...               +.
T Consensus        89 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~---------------l~  151 (265)
T 3qxz_A           89 PVQPAAFELRTPVIAAVNGHAIGIGMTLALHA--DIRILAEEGRYAIPQVRFGVAPDALAHWT---------------LP  151 (265)
T ss_dssp             CSSSCGGGSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCCEECCGGGGTSCCCTTHHHH---------------TH
T ss_pred             HHHHHHHhCCCCEEEEECCEEehHhHHHHHHC--CEEEEcCCCEEECcccccCcCCCccHHHH---------------HH
Confidence            34566778889999999999999999999999  47999999998764444332111100000               01


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       152 r~vG--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  186 (265)
T 3qxz_A          152 RLVG--TAVAAELLLTGASFSAQRAVETGLANRCLPA  186 (265)
T ss_dssp             HHHH--HHHHHHHHHHCCCBCHHHHHHHTSCSEEECH
T ss_pred             HHhC--HHHHHHHHHcCCCcCHHHHHHCCCccEeeCH
Confidence            1111  1112233333578999999999999999864

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.42  E-value=0.00026  Score=69.72  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--C--CcEEeccCc
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--K--GNRAALPSS  153 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--k--gkR~a~Pns  153 (246)
                      .+.-.-||...+|.||...  .-|.-|-.-.+-.+.+++...+.|+.|+++|.++|.|++.+++..  .  +..++.|++
T Consensus       402 c~~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~~am~~~~~~~~~d~~~a~p~A  481 (587)
T 1pix_A          402 CARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAAT  481 (587)
T ss_dssp             HHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTTCTTTEEEEEECTTC
T ss_pred             hhcCCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCccHHHHHhcCcccCcccceeeeccCC
Confidence            4445789999999999653  223346677788889999999999999999999998887776521  1  457888999


Q ss_pred             eeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHhcCCCccCHHHHHHcCCceEEcc
Q 025916          154 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP-------EQIEADIRRPKYFSPSEAVEYGIIDKVLY  226 (246)
Q Consensus       154 ~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~-------e~I~~~~~rd~~~sa~EAleyGLID~Ii~  226 (246)
                      ++-+=.|.+.     ..|- +.+++...+         ..|.+.       +++.+..++  ..+|..|.+.|+||.|++
T Consensus       482 ~~~Vm~pega-----a~Il-~r~~~~~~~---------~~g~~~~~~~~~~~~~~~~y~~--~~~p~~aa~~g~iD~VI~  544 (587)
T 1pix_A          482 EIAVMNGETA-----ATAM-YSRRLAKDR---------KAGKDLQPTIDKMNNLIQAFYT--KSRPKVCAELGLVDEIVD  544 (587)
T ss_dssp             EEESSCHHHH-----HHHH-HHHHHHHHH---------HTTCCCHHHHHHHHHHHHHHHH--TTSHHHHHHHTSSSEECC
T ss_pred             eEecCCHHHH-----HHHH-Hhhhhhhhh---------hcCCChHHHHHHHHHHHHHHHH--hCCHHHHHhcCCCccccC
Confidence            8865444321     1111 011111110         011111       112222222  488999999999999998


Q ss_pred             CC
Q 025916          227 TE  228 (246)
Q Consensus       227 ~~  228 (246)
                      +.
T Consensus       545 p~  546 (587)
T 1pix_A          545 MN  546 (587)
T ss_dssp             TT
T ss_pred             HH
Confidence            64

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=97.42  E-value=0.00022  Score=63.26  Aligned_cols=94  Identities=18%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             HHHhc---ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc---cChHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVMG---YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       113 yd~m~---~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~---G~a~di~i~a~el~~~~~~i~  186 (246)
                      ++.+.   .++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..   |-..-                
T Consensus       105 ~~~l~~~~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~----------------  166 (278)
T 4f47_A          105 IDALLKGRRLKKPLIAAVEGPAIAGGTEILQGT--DIRVAAESAKFGISEAKWSLYPMGGSAVR----------------  166 (278)
T ss_dssp             BTTTTBSCCCSSCEEEEECSEEETHHHHHHTTC--SEEEEETTCEEECCGGGGTCCCTTSHHHH----------------
T ss_pred             HHHHHHhcCCCCCEEEEECCEEehHHHHHHHhC--CEEEEcCCCEEECcccccCCCCCccHHHH----------------
Confidence            34455   6778999999999999999999999  479999999986544443331   11111                


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                        +.+..|  ...-.+++-....++++||+++||||+|.+..
T Consensus       167 --L~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  204 (278)
T 4f47_A          167 --LVRQIP--YTVACDLLLTGRHITAAEAKEMGLVGHVVPDG  204 (278)
T ss_dssp             --HHHHSC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             --HHHHhC--HHHHHHHHHcCCcCCHHHHHHCCCceEeeChh
Confidence              112222  23334444446789999999999999998664

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=97.41  E-value=0.00031  Score=61.86  Aligned_cols=95  Identities=17%  Similarity=0.079  Sum_probs=67.3

Q ss_pred             HHHh-cccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVM-GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       113 yd~m-~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ++.+ ..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.. + -..-                 .+
T Consensus        94 ~~~l~~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l  154 (265)
T 3swx_A           94 WQVDGRQLSKPLLVAVHGKVLTLGIELALAA--DIVIADETATFAQLEVNRGIYPFGGATI-----------------RF  154 (265)
T ss_dssp             TCCSSCCCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGTSCCCSSHHH-----------------HH
T ss_pred             HHHHHHhCCCCEEEEEcCeeehHHHHHHHHC--CEEEEcCCCEEECcccccccCCCccHHH-----------------HH
Confidence            3445 66778999999999999999999999  479999999987654443321 1 1111                 11


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       155 ~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3swx_A          155 PRTAG--WGNAMRWMLTADTFDAVEAHRIGIVQEIVPVG  191 (265)
T ss_dssp             HHHHC--HHHHHHHHTTCCCEEHHHHHHTTSCSEEESTT
T ss_pred             HHHhh--HHHHHHHHHcCCcCCHHHHHHcCCCCEecChh
Confidence            11222  23344556667899999999999999998664

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=97.41  E-value=0.0003  Score=62.38  Aligned_cols=96  Identities=17%  Similarity=0.135  Sum_probs=65.6

Q ss_pred             HHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKH  192 (246)
Q Consensus       113 yd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~  192 (246)
                      +..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.....--..               .+.+.
T Consensus        99 ~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~  161 (276)
T 2j5i_A           99 WKLLRMYAKPTIAMVNGWCFGGGFSPLVAC--DLAICADEATFGLSEINWGIPPGNLVSK---------------AMADT  161 (276)
T ss_dssp             TTTTTTCSSCEEEEECSCEEGGGHHHHHHS--SEEEEETTCEEECGGGGGTCCCCTTHHH---------------HHHHH
T ss_pred             HHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEEcCCCEEeCcccccCCCCcchHHH---------------HHHHH
Confidence            344566678999999999999999999999  4799999999876444333221100000               12222


Q ss_pred             hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          193 FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       193 Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       162 vG--~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~  194 (276)
T 2j5i_A          162 VG--HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL  194 (276)
T ss_dssp             SC--HHHHHHHHHHCCEEEHHHHHHHTSSSEEECH
T ss_pred             hC--HHHHHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence            22  2333444444788999999999999999854

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=97.40  E-value=0.00051  Score=60.73  Aligned_cols=98  Identities=12%  Similarity=0.132  Sum_probs=68.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|.....--..                +.
T Consensus        90 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~----------------l~  151 (268)
T 3i47_A           90 NLMYSISQSPKPTIAMVQGAAFGGGAGLAAAC--DIAIASTSARFCFSEVKLGLIPAVISPY----------------VV  151 (268)
T ss_dssp             HHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCTTTHHH----------------HH
T ss_pred             HHHHHHHhCCCCEEEEECCEEEhHhHHHHHhC--CEEEEcCCCEEECcccccCCCcccHHHH----------------HH
Confidence            46677888899999999999999999999999  4799999999865444333321100000                11


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       152 ~~vG--~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~  187 (268)
T 3i47_A          152 RAIG--ERAAKMLFMSAEVFDATRAYSLNLVQHCVPDD  187 (268)
T ss_dssp             HHHC--HHHHHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred             HHhC--HHHHHHHHHcCCccCHHHHHHcCCCcEeeChh
Confidence            1112  22334444457889999999999999998753

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=97.39  E-value=0.00025  Score=62.27  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=66.3

Q ss_pred             HHHh-cccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc---ccChHHHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVM-GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       113 yd~m-~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~---~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      +..+ ...+.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.   .|-..-                  
T Consensus        97 ~~~l~~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------  156 (258)
T 3lao_A           97 WGVVQPRRSKPLVVAVQGTCWTAGIELMLNA--DIAVAARGTRFAHLEVLRGIPPLGGSTVR------------------  156 (258)
T ss_dssp             TSCSSSCCCSCEEEEECSEEETHHHHHHHTS--SEEEEETTCEEECGGGGTCCCSSCCCCSH------------------
T ss_pred             HHHHHHhCCCCEEEEECCEeEhHHHHHHHhC--CEEEEcCCCEEeCcccccCCCCCccHHHH------------------
Confidence            4556 67788999999999999999999999  47999999988764443332   121111                  


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       157 L~r~vG--~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~  194 (258)
T 3lao_A          157 FPRAAG--WTDAMRYILTGDEFDADEALRMRLLTEVVEPG  194 (258)
T ss_dssp             HHHHHC--HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             HHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCCcEeeChh
Confidence            111112  22334455557889999999999999999754

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=97.39  E-value=0.00011  Score=64.61  Aligned_cols=94  Identities=12%  Similarity=0.031  Sum_probs=65.0

Q ss_pred             HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      ..+..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+.....|.. + -.+-                 .+.+
T Consensus        86 ~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r  146 (256)
T 3pe8_A           86 PKWPDMTKPVIGAINGAAVTGGLELALYC--DILIASENAKFADTHARVGLMPTWGLSV-----------------RLPQ  146 (256)
T ss_dssp             CCCCCCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCSSHHH-----------------HHHH
T ss_pred             HHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEcCCCEEECchhhhCCCCcccHHH-----------------HHHH
Confidence            45666778999999999999999999999  479999999986543333321 1 1111                 1112


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..|  ...-.+++-.+..++++||+++||||+|.+..
T Consensus       147 ~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  181 (256)
T 3pe8_A          147 KVG--VGLARRMSLTGDYLSAQDALRAGLVTEVVAHD  181 (256)
T ss_dssp             HHC--HHHHHHHHHHCCCEEHHHHHHHTSCSCEECGG
T ss_pred             hcC--HHHHHHHHHcCCCCCHHHHHHCCCCeEEeCHh
Confidence            222  22333444446779999999999999998654

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=97.38  E-value=0.00062  Score=59.91  Aligned_cols=95  Identities=16%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|+++++  -|++.++++|.+-....|.....--.               ..+
T Consensus        98 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l  160 (267)
T 3oc7_A           98 AALMRAIVESRLPVIAAIDGHVRAGGFGLVGACD--IAVAGPRSSFALTEARIGVAPAIISL---------------TLL  160 (267)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSS--EEEECTTCEEECCGGGGTCCCTTTHH---------------HHT
T ss_pred             HHHHHHHHhCCCCEEEEEcCeecccchHHHHHCC--EEEEcCCCEEeCcccccCCCcchhHH---------------HHH
Confidence            4566778888999999999999999999999994  79999999987544443321110000               011


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEE
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV  224 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~I  224 (246)
                      . .  .....-.+++-.+..++|+||+++||||+|
T Consensus       161 ~-~--vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  192 (267)
T 3oc7_A          161 P-K--LSARAAARYYLTGEKFDARRAEEIGLITMA  192 (267)
T ss_dssp             T-T--SCHHHHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred             H-H--hCHHHHHHHHHcCCccCHHHHHHCCChhhh
Confidence            1 2  233344455545788999999999999999

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=97.36  E-value=0.00023  Score=62.44  Aligned_cols=100  Identities=16%  Similarity=0.193  Sum_probs=68.7

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ...++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+-....|...   +..-            ...
T Consensus        85 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p---~~g~------------~~~  147 (261)
T 1ef8_A           85 LRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS--DLIIAASTSTFSMTPVNLGVPY---NLVG------------IHN  147 (261)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCC---CHHH------------HHT
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhC--CEEEecCCCEEeCchhccCCCC---CccH------------HHH
Confidence            3466778888899999999999999999999999  4899999998865332222211   1000            001


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +.+..|  ...-.+++-.+..++++||+++||||+|.+.
T Consensus       148 l~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  184 (261)
T 1ef8_A          148 LTRDAG--FHIVKELIFTASPITAQRALAVGILNHVVEV  184 (261)
T ss_dssp             TSSSSC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH
T ss_pred             HHHHhC--HHHHHHHHHcCCccCHHHHHHCCCcccccCH
Confidence            122222  2334444444678999999999999999853

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=97.36  E-value=0.00043  Score=63.16  Aligned_cols=94  Identities=10%  Similarity=0.070  Sum_probs=68.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCc-CcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG-RIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~-~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|+++|  +-|++.++++|.+-.... +.-+-.  .                 +
T Consensus       148 ~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~rias~~a~f~~pe~~lG~~P~~g--~-----------------l  206 (333)
T 3njd_A          148 RGFASLMHCDKPTVVKIHGYCVAGGTDIALHA--DQVIAAADAKIGYPPMRVWGVPAAG--L-----------------W  206 (333)
T ss_dssp             HHHTHHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEECTTCEEECGGGGTTCCCTTC--C-----------------H
T ss_pred             HHHHHHHhCCCCEEEEECCEEeHHHHHHHHhC--CEEEECCCCeeechhhceeccCHHH--H-----------------H
Confidence            34566777899999999999999999999999  479999999886644332 221111  0                 1


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+..|  ...-.+++-.+..|+|+||+++||||+|...
T Consensus       207 ~~~vG--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  242 (333)
T 3njd_A          207 AHRLG--DQRAKRLLFTGDCITGAQAAEWGLAVEAPDP  242 (333)
T ss_dssp             HHHHC--HHHHHHHHTTCCEEEHHHHHHTTSSSBCCCG
T ss_pred             HHHHH--HHHHHHHHhcCCCCCHHHHHHCCCccEecCh
Confidence            11222  3444556666789999999999999999864

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=97.35  E-value=0.00048  Score=61.63  Aligned_cols=96  Identities=18%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEecc-CceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALP-SSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~P-ns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|+++|  +-|++.+ +++|.+-....|.. | -.+-                 
T Consensus        97 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~lGl~p~~g~~~-----------------  157 (287)
T 3gkb_A           97 AVGELIRHQPQVTIVKLAGKARGGGAEFVAAA--DMAFAAAETAGLGQIEALMGIIPGGGGTQ-----------------  157 (287)
T ss_dssp             HHHHHHHHCSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECGGGGGTSCCCSSHHH-----------------
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHHC--CEEEEeCCCcEEECcccccCCCCCchHHH-----------------
Confidence            46777888899999999999999999999999  4799999 99987644443321 1 1111                 


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+.+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       158 ~L~r~vG--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  195 (287)
T 3gkb_A          158 YLRGRVG--RNRALEVVLTADLFDAETAASYGWINRALPA  195 (287)
T ss_dssp             HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred             HHHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh
Confidence            1112222  2223344444678999999999999999864

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=97.34  E-value=0.0007  Score=59.49  Aligned_cols=98  Identities=13%  Similarity=0.102  Sum_probs=66.4

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee-ecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI-KQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi-Hqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ..++..+...+.||.+.+-|.|.+ |.-|++++  +.|++.++++|.+ -....|..-..--..               .
T Consensus        98 ~~~~~~l~~~~kPvIAav~G~a~G-G~~Lalac--D~ria~~~a~f~~~pe~~lGl~p~~g~~~---------------~  159 (257)
T 1szo_A           98 QRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMS--DIVLAAESATFQDGPHFPSGIVPGDGAHV---------------V  159 (257)
T ss_dssp             HHHHHHHHHCCSCEEEEECSCBCS-STHHHHTS--SEEEEETTCEEECTTSGGGTCCCTTTHHH---------------H
T ss_pred             HHHHHHHHcCCCcEEEEECCchHH-HHHHHHHC--CEEEEeCCCEEecCcccccccCCCccHHH---------------H
Confidence            356677788899999999999995 88888888  5899999999875 333333211000000               1


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +.+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       160 l~r~vG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~  196 (257)
T 1szo_A          160 WPHVLG--SNRGRYFLLTGQELDARTALDYGAVNEVLSE  196 (257)
T ss_dssp             HHHHHC--HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH
T ss_pred             HHHHcC--HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence            222223  2334455556788999999999999999854

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=97.34  E-value=0.00073  Score=61.94  Aligned_cols=96  Identities=9%  Similarity=0.031  Sum_probs=68.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEec-cCceeeeecCCcCcc---cChHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQPIGRIE---GQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~-Pns~iMiHqp~~~~~---G~a~di~i~a~el~~~~~~i~  186 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|.++|  +-|++. ++++|.+-....|..   |-..-+.   +          
T Consensus       158 ~~~~~i~~~~kPvIAaV~G~A~GgG~~Lalac--D~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~---r----------  222 (334)
T 3t8b_A          158 EVQRLIRFMPKVVICLVNGWAAGGGHSLHVVC--DLTLASREYARFKQTDADVGSFDGGYGSAYLA---R----------  222 (334)
T ss_dssp             HHHHHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECCCTTCSSSSCCSCHHHHH---H----------
T ss_pred             HHHHHHHhCCCCEEEEECCccccCcchhHhhC--CEEEEeCCCcEEECcccccCCCCcccHHHHHH---H----------
Confidence            46677888999999999999999999999999  479999 999987765554432   2221111   1          


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                           ..|  ...-.+++-....++|+||+++||||+|.+..
T Consensus       223 -----~vG--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~  257 (334)
T 3t8b_A          223 -----QVG--QKFAREIFFLGRTYTAEQMHQMGAVNAVAEHA  257 (334)
T ss_dssp             -----HHH--HHHHHHHHHHCCEEEHHHHHHHTSCSEEECGG
T ss_pred             -----Hhh--HHHHHHHHHhCCcCCHHHHHHCCCCcEecCHH
Confidence                 111  11222333336789999999999999998653

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=97.32  E-value=0.00035  Score=62.61  Aligned_cols=98  Identities=12%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcC-cc-cChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR-IE-GQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~-~~-G~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-.+..| .- |-.+-.                
T Consensus       113 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~~~~~g~~~----------------  174 (289)
T 3t89_A          113 LDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMC--DLTIAADNAIFGQTGPKVGSFDGGWGASY----------------  174 (289)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCSTTTHH----------------
T ss_pred             HHHHHHHHcCCCCEEEEECCEeehHHHHHHHhC--CEEEEeCCCEEeccccccCCCCCchHHHH----------------
Confidence            457778888999999999999999999999999  4799999999876443333 21 111110                


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       +.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       175 -L~r~vG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~  212 (289)
T 3t89_A          175 -MARIVG--QKKAREIWFLCRQYDAKQALDMGLVNTVVPLA  212 (289)
T ss_dssp             -HHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred             -HHHhcC--HHHHHHHHHcCCcccHHHHHHCCCceEeeCHH
Confidence             111112  22233333345779999999999999998653

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=97.31  E-value=0.00025  Score=63.05  Aligned_cols=95  Identities=15%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|+++++  -|++.++++|-+-....|.. + -..-                 
T Consensus       112 ~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------  172 (276)
T 3rrv_A          112 REIVLGMARCRIPVVAAVNGPAVGLGCSLVALSD--IVYIAENAYLADPHVQVGLVAADGGPL-----------------  172 (276)
T ss_dssp             HHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSS--EEEEETTCEEECCHHHHTCCCCSSHHH-----------------
T ss_pred             HHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCC--EEEEeCCCEEECchhccCcCCCccHHH-----------------
Confidence            3566778888999999999999999999999994  79999999876533222221 1 1110                 


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEc
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL  225 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii  225 (246)
                      .+.+..|  ...-.+++-.+..++|+||+++||||+|.
T Consensus       173 ~L~r~vG--~~~A~ellltG~~i~A~eA~~~GLv~~vv  208 (276)
T 3rrv_A          173 TWPLHIS--LLLAKEYALTGTRISAQRAVELGLANHVA  208 (276)
T ss_dssp             HGGGTSC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             HHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCHHHHH
Confidence            1122222  33344455457889999999999999998

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=97.28  E-value=0.00024  Score=63.11  Aligned_cols=98  Identities=15%  Similarity=0.188  Sum_probs=68.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcC-ccc-ChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR-IEG-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~-~~G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....| .-+ -....                
T Consensus        99 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~~g~~~----------------  160 (275)
T 4eml_A           99 LDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGFGSSY----------------  160 (275)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCSTTTHH----------------
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECcccccCCCCCccHHHH----------------
Confidence            456778888999999999999999999999999  4799999999876433323 111 11110                


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       +.+..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       161 -L~r~vG--~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~  198 (275)
T 4eml_A          161 -LARIVG--QKKAREIWYLCRQYSAQEAERMGMVNTVVPVD  198 (275)
T ss_dssp             -HHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             -HHHHhH--HHHHHHHHHhCCCcCHHHHHHcCCccEeeCHH
Confidence             111112  22223344446779999999999999998653

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=97.26  E-value=0.00017  Score=63.71  Aligned_cols=96  Identities=13%  Similarity=0.078  Sum_probs=65.5

Q ss_pred             HHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKH  192 (246)
Q Consensus       113 yd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~  192 (246)
                      +..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..- .--               ...+.+.
T Consensus       103 ~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p-~g~---------------~~~L~r~  164 (274)
T 3tlf_A          103 TPPFRTMAKPVLTAVNGICCGAGMDWVTTT--DIVIASEQATFFDPHVSIGLVA-GRE---------------LVRVSRV  164 (274)
T ss_dssp             CCCTTSCCSCEEEEECSEEEGGGHHHHHHS--SEEEEETTCEEECCGGGGTCCC-CHH---------------HHHHTTT
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECcccccCccc-chH---------------HHHHHHH
Confidence            344666678999999999999999999999  4799999999876444333321 111               1122233


Q ss_pred             hCCCHHHHHHHhcCCC--ccCHHHHHHcCCceEEccCC
Q 025916          193 FGKTPEQIEADIRRPK--YFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       193 Tg~~~e~I~~~~~rd~--~~sa~EAleyGLID~Ii~~~  228 (246)
                      .|.  ..-.+++-.+.  .++|+||+++||||+|.+..
T Consensus       165 vG~--~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~  200 (274)
T 3tlf_A          165 LPR--SIALRMALMGKHERMSAQRAYELGLISEIVEHD  200 (274)
T ss_dssp             SCH--HHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGG
T ss_pred             hCH--HHHHHHHHcCCCCccCHHHHHHCCCCCeecCHH
Confidence            332  22333333345  89999999999999998653

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=97.26  E-value=0.00042  Score=62.07  Aligned_cols=97  Identities=14%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC-ceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn-s~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~  186 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|+++|  +-|++.++ ++|-+-....|.. + -.+-                
T Consensus        93 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~~a~f~~pe~~lGl~p~~g~~~----------------  154 (289)
T 3h0u_A           93 GMLFRKLSQLPAVTIAKLRGRARGAGSEFLLAC--DMRFASRENAILGQPEVGIGAPPGAGAIQ----------------  154 (289)
T ss_dssp             HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECTHHHHTSCCCSSHHH----------------
T ss_pred             HHHHHHHHhCCCCEEEEECCEeehhhHHHHHhC--CEEEEeCCCcEEeCchhhcCCCCCccHHH----------------
Confidence            356777888899999999999999999999999  47999998 8886533322221 1 1111                


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                       .+.+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       155 -~L~r~vG--~~~A~ellltG~~i~A~eA~~~GLV~~vv~~  192 (289)
T 3h0u_A          155 -HLTRLLG--RGRALEAVLTSSDFDADLAERYGWVNRAVPD  192 (289)
T ss_dssp             -HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred             -HHHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCH
Confidence             1111222  2233344444677999999999999999864

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=97.25  E-value=0.00025  Score=63.85  Aligned_cols=95  Identities=12%  Similarity=0.055  Sum_probs=66.1

Q ss_pred             HHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          113 YDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       113 yd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      +..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.. + -.+-                 .+.
T Consensus       123 ~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~  183 (298)
T 3qre_A          123 PHFVTMLRKPVIAAINGPCVGIGLTQALMC--DVRFAAAGAKFAAVFARRGLIAEFGISW-----------------ILP  183 (298)
T ss_dssp             TTGGGGSSSCEEEEECSCEETHHHHHHHHS--SEEEEETTCEEECCCCHHHHHCTTSHHH-----------------HHH
T ss_pred             HHHHHhCCCCEEEEECCceeecchHHHhhC--CEEEEcCCCEEECcccccCCCcchhHHH-----------------HHH
Confidence            445667789999999999999999999999  479999999986543332221 1 0110                 112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       184 r~vG--~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~  219 (298)
T 3qre_A          184 RLTS--WAVALDLLLSGRTFLAEEAAQLGLVKEVVTPE  219 (298)
T ss_dssp             HHSC--HHHHHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred             HhcC--HHHHHHHHHcCCCCCHHHHHHcCCCeEecCHH
Confidence            2222  23344445456789999999999999998643

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=97.24  E-value=0.00055  Score=60.36  Aligned_cols=93  Identities=13%  Similarity=0.050  Sum_probs=63.5

Q ss_pred             HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          115 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLYAKH  192 (246)
Q Consensus       115 ~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iya~~  192 (246)
                      .+..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|.. + -.+-                 .+.+.
T Consensus        96 ~~~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~  156 (262)
T 3r9q_A           96 SRLRLSKPVIAAISGHAVAGGIELALWC--DLRVVEEDAVLGVFCRRWGVPLIDGGTI-----------------RLPRL  156 (262)
T ss_dssp             TTCCCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECTHHHHTCCCCSSHHH-----------------HHHHH
T ss_pred             HHHhCCCCEEEEECCeeehhhhHHHHhC--CEEEEeCCCEEecchhccCCCCCccHHH-----------------HHHHH
Confidence            4456778999999999999999999999  479999999876533222221 1 1111                 01111


Q ss_pred             hCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          193 FGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       193 Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .|  ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       157 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~  190 (262)
T 3r9q_A          157 IG--HSRAMDLILTGRPVHANEALDIGLVNRVVARG  190 (262)
T ss_dssp             HC--HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             hC--HHHHHHHHHcCCcCCHHHHHHcCCccEecChh
Confidence            12  22333444446789999999999999999754

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=97.22  E-value=0.00074  Score=59.54  Aligned_cols=90  Identities=12%  Similarity=0.015  Sum_probs=62.3

Q ss_pred             CCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 025916          120 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ  199 (246)
Q Consensus       120 ~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~  199 (246)
                      +.||.+.+-|.|.+.|.-|+++++  .|++.++++|.+-....|.....--..               .+.+..|  ...
T Consensus       102 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~vG--~~~  162 (265)
T 3qxi_A          102 AKPLIAAVEGYALAGGTELALATD--LIVAARDSAFGIPEVKRGLVAGGGGLL---------------RLPERIP--YAI  162 (265)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGGGGTCCCCSSHHH---------------HHHHHSC--HHH
T ss_pred             CCCEEEEECCceeHHHHHHHHhCC--EEEEcCCCEEECcccccCcCCcccHHH---------------HHHHHhC--HHH
Confidence            679999999999999999999994  799999999865544433321110000               1111222  333


Q ss_pred             HHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          200 IEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       200 I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      -.+++-.+..++|+||+++||||+|.+..
T Consensus       163 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  191 (265)
T 3qxi_A          163 AMELALTGDNLSAERAHALGMVNVLAEPG  191 (265)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTT
T ss_pred             HHHHHHcCCCcCHHHHHHCCCccEeeChh
Confidence            34455457889999999999999998654

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=97.22  E-value=0.0011  Score=58.63  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=69.2

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ...++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-....|...... ..    .+          
T Consensus        89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g-~~----~l----------  151 (267)
T 3hp0_A           89 LYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSAT--DIAIADQTASFSLSELLFGLYPACV-LP----FL----------  151 (267)
T ss_dssp             HHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHS--SEEEECTTCEEECCGGGGTCCCTTT-HH----HH----------
T ss_pred             HHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhC--CEEEEcCCCEEECchhccCcCchhH-HH----HH----------
Confidence            3456777888899999999999999999999999  4799999999876544444321100 00    01          


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                       .+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       152 -~r~vG--~~~A~ellltg~~i~A~eA~~~GLV~~vv~~  187 (267)
T 3hp0_A          152 -IRRIG--RQKAHYMTLMTKPISVQEASEWGLIDAFDAE  187 (267)
T ss_dssp             -HHHHC--HHHHHHHHHHCCCBCHHHHHHHTSSSCBCSC
T ss_pred             -HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceecCC
Confidence             11222  2333444444678999999999999999854

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=97.21  E-value=0.00086  Score=60.41  Aligned_cols=89  Identities=13%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             cCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 025916          119 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLYAKHFGKT  196 (246)
Q Consensus       119 i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iya~~Tg~~  196 (246)
                      ++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|.. + -.+-                 .+.+..|  
T Consensus       139 ~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~vG--  197 (305)
T 3m6n_A          139 ARAHSIALVQGNALGGGFEAALSC--HTIIAEEGVMMGLPEVLFDLFPGMGAYS-----------------FMCQRIS--  197 (305)
T ss_dssp             TTCEEEEEECSCEETHHHHHHHHS--SEEEEETTCEEECGGGGGTCCCCSSHHH-----------------HHTTTSC--
T ss_pred             CCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEECchhccCcCCCccHHH-----------------HHHHHhc--
Confidence            478999999999999999999999  479999999987644433321 1 1111                 1222222  


Q ss_pred             HHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          197 PEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       197 ~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ...-.+++-.+..++|+||+++||||+|.+..
T Consensus       198 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~  229 (305)
T 3m6n_A          198 AHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRG  229 (305)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHHTSCSEEECTT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCCEecChh
Confidence            23333444446789999999999999998654

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=97.20  E-value=0.001  Score=58.32  Aligned_cols=90  Identities=16%  Similarity=0.113  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025916          118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVKLYAKHFGK  195 (246)
Q Consensus       118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~iya~~Tg~  195 (246)
                      .++.||.+.+-|.|.+.|.-|+++++  .|++.++++|.+-....|.. + -..-                 .+.+..  
T Consensus        91 ~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~v--  149 (256)
T 3trr_A           91 PPRKPIIAAVEGFALAGGTELVLSCD--LVVAGRSAKFGIPEVKRGLVAGAGGLL-----------------RLPNRI--  149 (256)
T ss_dssp             CCSSCEEEEECSBCCTHHHHHHHTSS--EEEEETTCEECCCGGGGTCCCCSSHHH-----------------HHHHHS--
T ss_pred             cCCCCEEEEECCeeeechhHHHHhCC--EEEECCCCEEEehhhccCCCCCccHHH-----------------HHHHHh--
Confidence            45679999999999999999999994  79999999986544333321 1 1111                 112222  


Q ss_pred             CHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          196 TPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       196 ~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ....-.+++-.+..++|+||+++||||+|.+..
T Consensus       150 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~  182 (256)
T 3trr_A          150 PYQVAMELALTGESFTAEDAAKYGFINRLVDDG  182 (256)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHGGGTCCSEEECTT
T ss_pred             CHHHHHHHHHhCCCcCHHHHHHCCCeeEecChH
Confidence            234445555557889999999999999998654

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.16  E-value=0.0006  Score=66.36  Aligned_cols=125  Identities=20%  Similarity=0.292  Sum_probs=83.4

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhc--ccCCcEEeccCcee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGA--GAKGNRAALPSSTI  155 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~Ilaa--G~kgkR~a~Pns~i  155 (246)
                      .+.-.-||...+|+||...  .-|.-|-+-.+-.+..++...+.|+.|+++|.++|.|++.+++  -..+..|+.|++++
T Consensus       369 cd~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i  448 (531)
T 3n6r_B          369 CDAFEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEV  448 (531)
T ss_dssp             HHHTTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEE
T ss_pred             hhccCCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceE
Confidence            3445689999999999653  2233466778888899999999999999999999988877775  11257899999998


Q ss_pred             eeecCCcC----cccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          156 MIKQPIGR----IEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       156 MiHqp~~~----~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      -.-.|.+.    +..+..+    .   +. ++...+-|.                +.+.+|..|.+.|+||.||++.
T Consensus       449 ~Vm~pegaa~Il~r~~~~~----~---~~-~~~~~~~y~----------------~~~~~p~~aa~~~~vD~vIdP~  501 (531)
T 3n6r_B          449 AVMGAKGATEIIHRGDLGD----P---EK-IAQHTADYE----------------ERFANPFVASERGFVDEVIQPR  501 (531)
T ss_dssp             ESSCHHHHHHHHCCTTTTS----T---TH-HHHHHHHHH----------------HHHSSSHHHHHHTSSSEECCGG
T ss_pred             ecCCHHHHHHHHhcccccc----h---hH-HHHHHHHHH----------------HHhcCHHHHHhcCccCcccCHH
Confidence            76555432    1111111    0   00 111111111                1335677899999999999876

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=97.15  E-value=0.00073  Score=60.00  Aligned_cols=97  Identities=12%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..|...-..  .+              
T Consensus       108 ~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~~~~~~~~--~~--------------  169 (279)
T 3t3w_A          108 EYSLRWRNVPKPSIAAVQGRCISGGLLLCWPC--DLIIAAEDALFSDPVVLMDIGGVEYHGH--TW--------------  169 (279)
T ss_dssp             HHHHHHHHCSSCEEEEECSEEEGGGHHHHTTS--SEEEEETTCEEECCGGGGTCSSCSSCCH--HH--------------
T ss_pred             HHHHHHHhCCCCEEEEECCeEhHHHHHHHHhC--CEEEecCCCEEeCcHHhcCCCCchHHHH--Hh--------------
Confidence            35567788899999999999999999999999  4799999999865444333322100000  01              


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       ..  ....-.+++-.+..++|+||+++||||+|.+..
T Consensus       170 -~v--G~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~  204 (279)
T 3t3w_A          170 -EL--GPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRD  204 (279)
T ss_dssp             -HH--CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred             -hc--CHHHHHHHHHcCCccCHHHHHHCCCCcEeeChH
Confidence             11  122223344446789999999999999998653

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=97.15  E-value=0.0014  Score=60.28  Aligned_cols=99  Identities=13%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|+++|  +-|++.++++|.+-....|.....--..               .+
T Consensus        95 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~iGl~p~~g~~~---------------~l  157 (353)
T 4hdt_A           95 YRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHG--NVRVVTDTTKMAMPEVGIGFIPDVGGTY---------------LL  157 (353)
T ss_dssp             HHHHHHHHHCSSCEEEEECBEEETHHHHHHTTS--SEEEECTTCEEECCGGGGTCCCCTTHHH---------------HH
T ss_pred             HHHHHHHHHCCCCEEEEeECceeecCccccCCc--CeeccchhccccCcccccccCCCcccee---------------hh
Confidence            456677888899999999999999999999999  4799999999876444433221110000               01


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+.-| .  .-.+++=.+..++|+||+++||||+|+...
T Consensus       158 ~rl~g-~--~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~  193 (353)
T 4hdt_A          158 SRAPG-K--LGLHAALTGAPFSGADAIVMGFADHYVPHD  193 (353)
T ss_dssp             HTSST-T--HHHHHHHHCCCBCHHHHHHHTSCSEECCGG
T ss_pred             hhhhh-H--HHHHHHhcCCCCCHHHHHHcCCCcEEeCHH
Confidence            11112 1  111222235779999999999999998765

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=97.14  E-value=0.00096  Score=58.86  Aligned_cols=92  Identities=16%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916          118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP  197 (246)
Q Consensus       118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~  197 (246)
                      .++.||.+.+-|.|.+.|.-|+++++  -|++.++++|.+-....|..-..--.               ..+.+..|  .
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~vG--~  159 (267)
T 3r9t_A           99 FIDKPTIAAVNGTALGGGTELALASD--LVVADERAQFGLPEVKRGLIAAAGGV---------------FRIAEQLP--R  159 (267)
T ss_dssp             CCSSCEEEEECSEECTHHHHHHHHSS--EEEEETTCEECCGGGGTTCCCTTTHH---------------HHHHHHSC--H
T ss_pred             hCCCCEEEEECCEEEhHHHHHHHhCC--EEEEcCCCEEECcccccCCCCCccHH---------------HHHHHHcC--H
Confidence            56789999999999999999999994  79999999986544443322111000               11222222  2


Q ss_pred             HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..-.+++-....++++||+++||||+|.+..
T Consensus       160 ~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~  190 (267)
T 3r9t_A          160 KVAMRLLLTGEPLSAAAARDWGLINEVVEAG  190 (267)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECTT
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEcChh
Confidence            3344445457889999999999999999654

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=97.12  E-value=0.0011  Score=61.28  Aligned_cols=98  Identities=14%  Similarity=0.063  Sum_probs=67.9

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|.++|  +-|++.++++|.+-....|..-..--..               .+.
T Consensus        93 ~~~~~l~~~~kPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~  155 (363)
T 3bpt_A           93 MLNNAVGSCQKPYVALIHGITMGGGVGLSVHG--QFRVATEKCLFAMPETAIGLFPDVGGGY---------------FLP  155 (363)
T ss_dssp             HHHHHHHTCSSCEEEEECSEEETHHHHTTTTS--SEEEECTTCEEECCGGGTTSCCCTTHHH---------------HHH
T ss_pred             HHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEEcCCeEEeCCccccCCCCCchHHH---------------HHH
Confidence            34567778899999999999999999999999  4899999999876555444321110000               112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|.   .-.+++-.+..++|+||+++||||+|.+..
T Consensus       156 r~~g~---~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~  190 (363)
T 3bpt_A          156 RLQGK---LGYFLALTGFRLKGRDVYRAGIATHFVDSE  190 (363)
T ss_dssp             HSSTT---HHHHHHHHCCCEETHHHHHTTSCSEECCGG
T ss_pred             HhhHH---HHHHHHHcCCCCCHHHHHHCCCcceecCHH
Confidence            22232   222333346889999999999999998654

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=97.04  E-value=0.00066  Score=59.98  Aligned_cols=95  Identities=12%  Similarity=0.055  Sum_probs=63.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee-ecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI-KQPIGRIE-G-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi-Hqp~~~~~-G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      .++..+...+.||.+.+-|.|. .|.-|++++  +.|++.++++|.+ -....|.. + -.+-         .       
T Consensus       108 ~~~~~l~~~~kPvIAav~G~a~-GG~~Lalac--D~ria~~~a~f~~~pe~~lGl~p~~g~~~---------~-------  168 (263)
T 2j5g_A          108 KVLQNLLDIEVPVISAVNGAAL-LHSEYILTT--DIILASENTVFQDMPHLNAGIVPGDGVHI---------L-------  168 (263)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEC-SCGGGGGGC--SEEEEETTCEECCCHHHHHTCCCCSSHHH---------H-------
T ss_pred             HHHHHHHhCCCCEEEEECCcch-HHHHHHHhC--CEEEEcCCCEEecCcccccccCCCccHHH---------H-------
Confidence            5667778889999999999999 487788888  5899999998865 22222211 1 1111         0       


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                       +.+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       169 -L~r~vG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~  205 (263)
T 2j5g_A          169 -WPLALG--LYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ  205 (263)
T ss_dssp             -HHHHHH--HHHHHHHHHTTCCEEHHHHHHTTSCSEEECG
T ss_pred             -HHHHcC--HHHHHHHHHcCCCCCHHHHHHCCCccEecCh
Confidence             111111  1233344555788999999999999999864

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.02  E-value=0.00042  Score=67.41  Aligned_cols=129  Identities=18%  Similarity=0.315  Sum_probs=82.4

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc---cCCcEEeccCce
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG---AKGNRAALPSST  154 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG---~kgkR~a~Pns~  154 (246)
                      .+.-.-||...+|+||...  .-|.-|-+..+-.+.+++...+.|+.|+++|.++|.|. +.++|   ..+..|+.||++
T Consensus       363 c~~~~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~  441 (530)
T 3iav_A          363 CDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQ  441 (530)
T ss_dssp             HHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCE
T ss_pred             HHhcCCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCce
Confidence            3444689999999999663  22223667778888899999999999999999999555 44443   136789999999


Q ss_pred             eeeecCCcCc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          155 IMIKQPIGRI----EGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       155 iMiHqp~~~~----~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +-.-.|.+..    ..+....+   ++-...++.+.+-|               + +...+|..|.+.|+||.||++.
T Consensus       442 ~~Vm~~egaa~il~r~~~~~~~---~d~~~~~~~~~~~y---------------~-~~~~~p~~aa~~~~vD~VIdP~  500 (530)
T 3iav_A          442 IAVMGAQGAVNILHRRTIADAG---DDAEATRARLIQEY---------------E-DALLNPYTAAERGYVDAVIMPS  500 (530)
T ss_dssp             EESSCHHHHHHHHTSTTTSTTC---TTCHHHHHHHHHHH---------------H-HHHSSSHHHHHTTSSSEECCGG
T ss_pred             EecCCHHHHHHHHhhhhhhhcc---cCHHHHHHHHHHHH---------------H-HhcCCHHHHHhcCCCCcccCHH
Confidence            8765554321    11100000   00011222222222               1 1234788899999999999876

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.87  E-value=0.0034  Score=62.75  Aligned_cols=97  Identities=19%  Similarity=0.117  Sum_probs=67.8

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cC-hHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~-a~di~i~a~el~~~~~~i~~  187 (246)
                      ..+++.|..++.||.+.+-|.|.+.|.-|+++|  +.|++.++++|-+-....|.. |- .+-                 
T Consensus        93 ~~~~~~l~~~~kPvIAav~G~a~GgG~elalac--D~ria~~~a~fglpev~lGl~P~~ggt~-----------------  153 (715)
T 1wdk_A           93 NKIFSDFEDLNVPTVAAINGIALGGGLEMCLAA--DFRVMADSAKIGLPEVKLGIYPGFGGTV-----------------  153 (715)
T ss_dssp             HHHHHHHHTCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCCSSHHH-----------------
T ss_pred             HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHC--CEEEEeCCCEEeChhhccCCCCCccHHH-----------------
Confidence            356677788889999999999999999999999  489999999976544443321 11 111                 


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      .+.+..|  ...-.+++-.++.++|+||+++||||+|.+.
T Consensus       154 ~L~r~vG--~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~  191 (715)
T 1wdk_A          154 RLPRLIG--VDNAVEWIASGKENRAEDALKVSAVDAVVTA  191 (715)
T ss_dssp             HHHHHHC--HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG
T ss_pred             HHHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence            1112222  2223344444678999999999999999853

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=96.85  E-value=0.0017  Score=61.08  Aligned_cols=98  Identities=11%  Similarity=0.068  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|..++.||.+.+-|.|.+.|.-|+++|  +.|++.++++|-+-....|..-..--.               ..+.
T Consensus       133 ~l~~~i~~~~kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~P~~G~t---------------~~L~  195 (407)
T 3ju1_A          133 RLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGA--SHKVVTETSRIAMPEVTIGLYPDVGGS---------------YFLN  195 (407)
T ss_dssp             HHHHHHHTCSSCEEEECCSEEETHHHHHHHHC--SEEEECTTCEEECGGGGGTCCSCTTHH---------------HHTT
T ss_pred             HHHHHHHHCCCCEEEEECCccccCcchHHhcC--CEEEEcCCCEEeChHhhcCCCCCchHH---------------HHHh
Confidence            35566778889999999999999999999999  479999999987644443332110000               0112


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..|   ..-.+++-.+..++|+||+++||||+|+...
T Consensus       196 rl~g---~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~  230 (407)
T 3ju1_A          196 RMPG---KMGLFLGLTAYHMNAADACYVGLADHYLNRD  230 (407)
T ss_dssp             TSST---THHHHHHHHCCCBCHHHHHHHTSCSEECCGG
T ss_pred             hhhH---HHHHHHHHcCCcCcHHHHHHCCCccEEcCHH
Confidence            2223   1223333346789999999999999998654

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=96.83  E-value=0.0059  Score=59.65  Aligned_cols=96  Identities=9%  Similarity=0.021  Sum_probs=68.0

Q ss_pred             HHHHHh----cccCCCEEEEEecccchHHHHHHhcccCCcEEeccC--ceeeeecCC-cCcc-cC-hHHHHHHHHHHHHH
Q 025916          111 AIYDVM----GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPI-GRIE-GQ-ATDVEIARKEMKNV  181 (246)
Q Consensus       111 aIyd~m----~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn--s~iMiHqp~-~~~~-G~-a~di~i~a~el~~~  181 (246)
                      .++..|    ..++.||.+.+-|.|.+.|.-|.++|  +.|++.++  ++|.+-... .|.. |- ..-           
T Consensus       116 ~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALAC--D~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~-----------  182 (556)
T 2w3p_A          116 ETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALAC--DEIYLVDDRSSSVSLPEVPLLGVLPGTGGLT-----------  182 (556)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHS--SEEEEECSSSCEEECCHHHHHSSCCTTTHHH-----------
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhC--CEEEEcCCCCcEEecccccccCCCCCccHHH-----------
Confidence            355666    77889999999999999999999999  48999999  887653322 2221 11 000           


Q ss_pred             HHHHHHHHH--HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          182 KAELVKLYA--KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       182 ~~~i~~iya--~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                            .+.  +.  .....-.+++-.+..++++||+++||||+|++.
T Consensus       183 ------rLp~~Rl--VG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~  222 (556)
T 2w3p_A          183 ------RVTDKRK--VRHDRADIFCTVVEGVRGERAKAWRLVDEVVKP  222 (556)
T ss_dssp             ------HHHHTSC--CCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECH
T ss_pred             ------HHHhhcc--CCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence                  112  22  234455566666888999999999999999853

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=96.80  E-value=0.0026  Score=57.67  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCCCCCCCCCCCchHHH-------HHHHHHHhccc---CCCEEEEEecccchHHHHHHh-cccCCcEEeccC
Q 025916           84 EKPIYLYINSTGTTKGGEKLGYETE-------AFAIYDVMGYV---KPPIFTLCVGNAWGEAALLLG-AGAKGNRAALPS  152 (246)
Q Consensus        84 ~k~I~LyINSpG~~~~~~~~G~v~~-------g~aIyd~m~~i---~~~V~Ti~~G~AaS~aa~Ila-aG~kgkR~a~Pn  152 (246)
                      .-|+.+..+|+|        +++.+       .-.|+..+..+   +.|+.+++.|-|++.|++.++ +|  +.+++.|+
T Consensus       153 ~~PvI~l~~sGG--------arlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~--D~via~~~  222 (304)
T 2f9y_B          153 NCPLICFSASGG--------ARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLG--DLNIAEPK  222 (304)
T ss_dssp             TCCEEEEEEESS--------BCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC--SEEEECTT
T ss_pred             CCCEEEEECCCC--------cCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcC--CEEEEeCC
Confidence            678999999999        44432       23455555444   789999999999998866644 56  57899999


Q ss_pred             ceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          153 STIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       153 s~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      |+|.+--|.                          .+.+.+|..       +. +...+++++.+.|+||.|++.
T Consensus       223 A~i~v~Gp~--------------------------~i~~~ig~~-------l~-~~~~~Ae~~~~~Glvd~Vv~~  263 (304)
T 2f9y_B          223 ALIGFAGPR--------------------------VIEQTVREK-------LP-PGFQRSEFLIEKGAIDMIVRR  263 (304)
T ss_dssp             CBEESSCHH--------------------------HHHHHHTSC-------CC-TTTTBHHHHGGGTCCSEECCH
T ss_pred             cEEEeecHH--------------------------HHHHHhCcc-------CC-cccCCHHHHHhcCCccEEeCc
Confidence            988653111                          012222322       22 346799999999999999865

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.63  E-value=0.0057  Score=61.63  Aligned_cols=98  Identities=23%  Similarity=0.243  Sum_probs=69.5

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cC-hHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~-a~di~i~a~el~~~~~~i~  186 (246)
                      ...+++.|..++.||.+.+-|.|.+.|.-|.++|  +.|++.++++|-+-....|.. |- .+.                
T Consensus        95 ~~~~~~~i~~~~kPvIAai~G~a~GGG~elalac--D~ria~~~a~fg~pev~lGl~Pg~ggt~----------------  156 (742)
T 3zwc_A           95 LGSLVDEIQRYQKPVLAAIQGVALGGGLELALGC--HYRIANAKARVGLPEVTLGILPGARGTQ----------------  156 (742)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCTTTHHH----------------
T ss_pred             HHHHHHHHHhCCCCEEEEECccchHHHHHHHHhc--CEEEEcCCCEEECcccCcccCCCccHHH----------------
Confidence            4567888999999999999999999999999999  489999999886543333321 11 111                


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                       .+.+..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       157 -rL~rlvG--~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~  194 (742)
T 3zwc_A          157 -LLPRVVG--VPVALDLITSGKYLSADEALRLGILDAVVKS  194 (742)
T ss_dssp             -HHHHHHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEEESS
T ss_pred             -HHHHhhh--HHHHHHHHHcCCchhHHHHHHcCCccEecCc
Confidence             0111222  2222334444788999999999999999864

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.63  E-value=0.0017  Score=63.53  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc--cCCcEEeccCceeee
Q 025916           82 DVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG--AKGNRAALPSSTIMI  157 (246)
Q Consensus        82 d~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG--~kgkR~a~Pns~iMi  157 (246)
                      .-.-||...+|+||...  .-|.-|-+..+-.+..++...+.|+.|+++|.+++.|++-+++.  ..+..++.|++++-+
T Consensus       385 ~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V  464 (555)
T 3u9r_B          385 QRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV  464 (555)
T ss_dssp             HHTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHTTCGGGCCSEEEECTTCEEES
T ss_pred             cCCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhhcCccCCCCeEEEcCCcEEEc
Confidence            34689999999999653  12223566777888889999999999999999999888776641  125678889988864


Q ss_pred             e
Q 025916          158 K  158 (246)
Q Consensus       158 H  158 (246)
                      -
T Consensus       465 m  465 (555)
T 3u9r_B          465 M  465 (555)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.60  E-value=0.00028  Score=68.55  Aligned_cols=80  Identities=16%  Similarity=0.259  Sum_probs=62.0

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhc----ccCCcEEeccCc
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGA----GAKGNRAALPSS  153 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~Ilaa----G~kgkR~a~Pns  153 (246)
                      .+...-||...+||||...  .-|.-|-...+-.++..+...+.|+.++++|.++|.|++.+++    +  +..++.|+|
T Consensus       356 a~~~~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~--D~v~a~p~A  433 (522)
T 1x0u_A          356 CDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGA--DLVYAWPTA  433 (522)
T ss_dssp             HHHTTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTC--SEEEECTTC
T ss_pred             HhhCCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCC--CEEEEeCCC
Confidence            4455789999999999542  1222355667777888888889999999999999999888877    4  467889999


Q ss_pred             eeeeecCC
Q 025916          154 TIMIKQPI  161 (246)
Q Consensus       154 ~iMiHqp~  161 (246)
                      ++-+-.|.
T Consensus       434 ~i~v~gpe  441 (522)
T 1x0u_A          434 EIAVTGPE  441 (522)
T ss_dssp             EEESSCHH
T ss_pred             EEEecCHH
Confidence            98776665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.33  E-value=0.0046  Score=61.97  Aligned_cols=93  Identities=20%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-cC-hHHHHHHHHHHHHHHHHHHHHHHH
Q 025916          114 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-GQ-ATDVEIARKEMKNVKAELVKLYAK  191 (246)
Q Consensus       114 d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G~-a~di~i~a~el~~~~~~i~~iya~  191 (246)
                      +.|..++.||.+.+-|.|.+.|.-|.++|  +.|++.++++|-+-....|.. |- .+-                 .+.+
T Consensus        96 ~~l~~~~kPvIAav~G~a~GgG~elalac--D~ria~~~a~fglpev~lGl~P~~Ggt~-----------------~L~r  156 (725)
T 2wtb_A           96 DLLEAARKPSVAAIDGLALGGGLELAMAC--HARISAPAAQLGLPELQLGVIPGFGGTQ-----------------RLPR  156 (725)
T ss_dssp             CCCCTSSSCEEEEECSEEETHHHHHHHHS--SEEEECTTCEEECCGGGGTCCCCSSHHH-----------------HHHH
T ss_pred             HHHHhCcCcEEEEECCccCcccHHHHHhC--CEEEEcCCCEEeCchhccCCCCCccHHH-----------------HHHH
Confidence            34555678999999999999999999999  489999999976544333321 11 111                 0111


Q ss_pred             HhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          192 HFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       192 ~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ..|  ...-.+++-.+..++|+||+++||||+|.+.
T Consensus       157 lvG--~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~  190 (725)
T 2wtb_A          157 LVG--LTKALEMILTSKPVKAEEGHSLGLIDAVVPP  190 (725)
T ss_dssp             HHC--HHHHHHHHHHCCCEEHHHHHHHTSCSEECCT
T ss_pred             hcC--HHHHHHHHHcCCCCCHHHHHHCCccceEcCh
Confidence            122  2222334434678999999999999999854

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=96.24  E-value=0.011  Score=56.28  Aligned_cols=90  Identities=18%  Similarity=0.107  Sum_probs=62.3

Q ss_pred             ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916          118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP  197 (246)
Q Consensus       118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~  197 (246)
                      .++.||.+.+-|.|.+.|.-|+++|+  .|++.++++|.+-....|..-... ..    .+           .+..|  .
T Consensus       282 ~~pkPvIAAVnG~A~GGG~eLALaCD--irIAae~A~Fglpev~lGl~P~~g-~~----~L-----------~rlvG--~  341 (440)
T 2np9_A          282 RIEKPWVAAVDGFAIGGGAQLLLVFD--RVLASSDAYFSLPAAKEGIIPGAA-NL----RL-----------GRFAG--P  341 (440)
T ss_dssp             EECCCEEEEECSEEETHHHHHGGGCS--EEEEETTCEEECCCTTTCCCCTTH-HH----HH-----------HHHHH--H
T ss_pred             cCCCCEEEEECCcccccchHHHhhCC--EEEEcCCCEEECchhccCcCcchH-HH----HH-----------HHHhh--H
Confidence            56789999999999999999999994  799999999877655544321111 00    01           11111  1


Q ss_pred             HHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ..-.+++-.+..|+++||+++||||+|.+.
T Consensus       342 ~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~  371 (440)
T 2np9_A          342 RVSRQVILEGRRIWAKEPEARLLVDEVVEP  371 (440)
T ss_dssp             HHHHHHHHHCCCEETTSGGGGGTCSEEECH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEecCh
Confidence            122233334678999999999999999864

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.21  E-value=0.0031  Score=62.11  Aligned_cols=135  Identities=13%  Similarity=0.146  Sum_probs=81.8

Q ss_pred             hCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhc---ccC-CcEEeccCce
Q 025916           81 EDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGA---GAK-GNRAALPSST  154 (246)
Q Consensus        81 ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~Ilaa---G~k-gkR~a~Pns~  154 (246)
                      +.-.-||...+|.||..-  .-|.-|-+-.+-.+..++...+.|+.|+++|.++|.|.+.+++   +.. ...++.|||+
T Consensus       405 d~f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~~~~~~~awp~A~  484 (588)
T 3gf3_A          405 ARDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIGTGACE  484 (588)
T ss_dssp             HHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHHHHTTCTTCTTTEEEEEECTTCE
T ss_pred             hhcCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCccHHHHHHhcccccCCccceEEECCCce
Confidence            334679999999999653  1222366777888999999999999999999999977766554   210 1457788888


Q ss_pred             eeeecCCcCcccChHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          155 IMIKQPIGRIEGQATDVEIARKEMKNVKAE---LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       155 iMiHqp~~~~~G~a~di~i~a~el~~~~~~---i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +-.-.|.+.     ..+ .+.+++.+..+.   ....-++     .+++.+..++.  .+|.-|-+.|+||.||++.
T Consensus       485 ~sVm~pEga-----a~I-l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~~~--~~p~~aA~r~~vD~VIdP~  548 (588)
T 3gf3_A          485 YYVMPGETA-----ANA-MYSRKLVKAKKAGEDLQPIIGK-----MNDMIQMYTDK--SRPKYCTEKGMVDEIVDMT  548 (588)
T ss_dssp             EESSCHHHH-----HHH-HHHHHHHHC-------CHHHHH-----HHHHHHHHHHT--TSHHHHHHTTSSSEECCGG
T ss_pred             EEeCCHHHH-----HHH-HhhhHHhhhhccccccchHHHH-----HHHHHHHHHHh--CCHHHHHhcCCCCeeeCHH
Confidence            765444321     111 112222221110   0000000     11223333322  5899999999999999876

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=95.70  E-value=0.0062  Score=61.76  Aligned_cols=82  Identities=13%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEE--ecccchHHHHHHhcccCC--c--EEecc
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLC--VGNAWGEAALLLGAGAKG--N--RAALP  151 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~--~G~AaS~aa~IlaaG~kg--k--R~a~P  151 (246)
                      .+...-||...+|.||...  .-|.-|-+-.+-.+.+++...+.|+.|++  .|.+.+ |++.+++..-+  .  .|+.|
T Consensus       479 cd~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp  557 (793)
T 2x24_A          479 FNREKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRG-GSWAVMDTSINPLCIEMYADR  557 (793)
T ss_dssp             HHTTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEH-HHHHTTCGGGSTTTEEEEEET
T ss_pred             hccCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEecCCcccc-hhHHhhhcccCccHHHHhhhc
Confidence            3445789999999999653  22233667788889999999999999999  898876 66666653323  2  48889


Q ss_pred             CceeeeecCCc
Q 025916          152 SSTIMIKQPIG  162 (246)
Q Consensus       152 ns~iMiHqp~~  162 (246)
                      +|++-+=.|.+
T Consensus       558 ~A~~~VM~pEg  568 (793)
T 2x24_A          558 ESRASVLEPEG  568 (793)
T ss_dssp             TCEEESSCHHH
T ss_pred             cCEEEecCHHH
Confidence            99987655543

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=95.58  E-value=0.017  Score=51.91  Aligned_cols=106  Identities=12%  Similarity=0.075  Sum_probs=67.0

Q ss_pred             hhCCCCCEEEEEcCCCCCCCCCCCchHHHH-------HHHH---HHhcccCCCEEEEEecccchHHHHHHhcccCCcEEe
Q 025916           80 YEDVEKPIYLYINSTGTTKGGEKLGYETEA-------FAIY---DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAA  149 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~~~~~~G~v~~g-------~aIy---d~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a  149 (246)
                      .....-|+..+++|+|.        ...+|       -.|.   ..+.....|..+++.|-+++.++..++... +..++
T Consensus       152 A~~~~lPlI~l~dsgGa--------r~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~-D~i~a  222 (285)
T 2f9i_B          152 CTENRLPFILFSASGGA--------RMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVG-DINLS  222 (285)
T ss_dssp             HHHTTCCEEEEEEECSC--------CGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC-SEEEE
T ss_pred             HHHcCCCEEEEEeCCCc--------chhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCC-CEEEE
Confidence            34456899999999993        33332       2222   333344689999999999888766654432 45678


Q ss_pred             ccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          150 LPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       150 ~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .|+|.+-+--|..-                          ++-++++       .. +-+-+|+-..+.|+||.|+++.
T Consensus       223 ~p~A~i~~aGP~vi--------------------------~~~~~~~-------~~-e~~~~Ae~~~~~G~iD~Iv~~~  267 (285)
T 2f9i_B          223 EPKALIGFAGRRVI--------------------------EQTINEK-------LP-DDFQTAEFLLEHGQLDKVVHRN  267 (285)
T ss_dssp             CTTCBEESSCHHHH--------------------------HHHHTSC-------CC-TTTTBHHHHHHTTCCSEECCGG
T ss_pred             eCCcEEEEcCHHHH--------------------------HHHhccc-------ch-HhHhhHHHHHhcCCccEEeChH
Confidence            89988865444321                          0111111       11 2344688889999999999854

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=86.65  E-value=0.73  Score=46.56  Aligned_cols=78  Identities=15%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEe--cccchHHHHHHhccc--CCc--EEeccCce
Q 025916           83 VEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCV--GNAWGEAALLLGAGA--KGN--RAALPSST  154 (246)
Q Consensus        83 ~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~--G~AaS~aa~IlaaG~--kgk--R~a~Pns~  154 (246)
                      -.-||...+|.||...  .-|.-|-...+-.+.+++...+.|+.|+++  |.+.|. +++.+++.  .+.  .|+.|+|+
T Consensus       468 f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GG-A~~am~~~~~ad~~~v~Awp~A~  546 (758)
T 3k8x_A          468 EQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGG-SWVVVDPTINADQMEMYADVNAR  546 (758)
T ss_dssp             SCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETH-HHHTTCGGGSTTTEEEEEETTCE
T ss_pred             cCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEecCCccchH-HHHHhCcccCCCHHHHhcCCCCE
Confidence            4689999999999653  222236677888999999999999999999  999874 55544421  244  88999999


Q ss_pred             eeeecCC
Q 025916          155 IMIKQPI  161 (246)
Q Consensus       155 iMiHqp~  161 (246)
                      +-+-.|.
T Consensus       547 isVM~pE  553 (758)
T 3k8x_A          547 AGVLEPQ  553 (758)
T ss_dssp             EESSCHH
T ss_pred             EEccCHH
Confidence            8765554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	6e-50
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	5e-42
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	1e-40
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	2e-33
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	3e-33

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  159 bits (404), Expect = 6e-50
 Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 9/152 (5%)

Query: 79  MYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 138
             E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G A    A L
Sbjct: 41  EAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFL 92

Query: 139 LGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           L AGAKG R  LP+S +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ E
Sbjct: 93  LTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLE 152

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230
           QIE D  R ++ S  EAVEYG++D +L T ++
Sbjct: 153 QIERDTERDRFLSAPEAVEYGLVDSIL-THRN 183

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  139 bits (352), Expect = 5e-42
 Identities = 67/147 (45%), Positives = 88/147 (59%), Gaps = 8/147 (5%)

Query: 79  MYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 138
             E  +KPI++YINS G           T   AIYD M Y+  PI T CVG A    +LL
Sbjct: 51  QSESNKKPIHMYINSPGG--------VVTAGLAIYDTMQYILNPICTWCVGQAASMGSLL 102

Query: 139 LGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPE 198
           L AG  G R +LP+S IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ +
Sbjct: 103 LAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQ 162

Query: 199 QIEADIRRPKYFSPSEAVEYGIIDKVL 225
            IE+ + R +Y SP EA E+GI+DKVL
Sbjct: 163 VIESAMERDRYMSPMEAQEFGILDKVL 189

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  135 bits (342), Expect = 1e-40
 Identities = 56/146 (38%), Positives = 80/146 (54%), Gaps = 8/146 (5%)

Query: 80  YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 139
            ED  K I LYINS G        G  +   AIYD M      I T  +G A      LL
Sbjct: 39  AEDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLL 90

Query: 140 GAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQ 199
            AG KG R ALP + I++ QP+G + G A D+ I  ++   +K E+ +L A+  G+  E+
Sbjct: 91  AAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIER 150

Query: 200 IEADIRRPKYFSPSEAVEYGIIDKVL 225
           IEAD  R ++F+ +EA+EYG +D ++
Sbjct: 151 IEADSDRDRWFTAAEALEYGFVDHII 176

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score =  117 bits (295), Expect = 2e-33
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 10/149 (6%)

Query: 79  MYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL 138
             +D  K IYLY+N+ G        G  +   AI D M ++K  + T+ +G A     ++
Sbjct: 49  DAQDSTKDIYLYVNTPG--------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVI 100

Query: 139 LGAGAKGNRAALPSSTIMIKQPIG--RIEGQATDVEIARKEMKNVKAELVKLYAKHFGKT 196
             +GAKG R  LP++  MI QP+G      Q TD+ IA + +   +  L K+ A++ G++
Sbjct: 101 ASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQS 160

Query: 197 PEQIEADIRRPKYFSPSEAVEYGIIDKVL 225
            E++ AD  R  + S  E +EYG ID+++
Sbjct: 161 MEKVHADAERDNWMSAQETLEYGFIDEIM 189

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score =  117 bits (293), Expect = 3e-33
 Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 8/150 (5%)

Query: 81  EDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLG 140
                 I +YINS G            E  AI D+  Y+K  I T+  G     A+++L 
Sbjct: 44  NINHNDIKIYINSPGG--------SINEGLAILDIFNYIKSDIQTISFGLVASMASVILA 95

Query: 141 AGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQI 200
           +G KG R +LP+  IMI QP+G   G   D+EI  KE+  +K  L    +    +T E I
Sbjct: 96  SGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETI 155

Query: 201 EADIRRPKYFSPSEAVEYGIIDKVLYTEKS 230
           E D  R  Y +  EA +YGIID+V+ T+  
Sbjct: 156 EKDSDRDYYMNALEAKQYGIIDEVIETKLP 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	98.17
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	97.92
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.81
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	97.68
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	97.66
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	97.63
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	97.63
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	97.63
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	97.6
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.59
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	97.57
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.5
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.49
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	97.43
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	97.32
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.15
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	97.09
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	97.03
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.94
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.89
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	96.06
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	83.67

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.9e-55  Score=376.88  Aligned_cols=180  Identities=39%  Similarity=0.588  Sum_probs=166.5

Q ss_pred             ccccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchH
Q 025916           39 FISPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYE  106 (246)
Q Consensus        39 ~~~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v  106 (246)
                      +++|++. ++..|++.  +||||+||++|||       +++++.++++|    .+++++||+|||||||        |++
T Consensus         1 p~~p~~~~~~~~~~~~--~Di~s~l~~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v   70 (193)
T d1tg6a1           1 PLIPIVVEQTGRGERA--YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GVV   70 (193)
T ss_dssp             CCCCBCC-----------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCH
T ss_pred             CCCCEEEeecCCCchh--hhHhHHHhccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCc--------ccH
Confidence            4689998 77888866  9999999999999       77899999998    5688899999999999        999


Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      ++|++|||+|++++++|+|+|.|.|+|||++|+++|++|+|+++|||++|||||++++.|+++|+++++++++++++.+.
T Consensus        71 ~~g~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~  150 (193)
T d1tg6a1          71 TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLY  150 (193)
T ss_dssp             HHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ++|+++||++.++|+++++||+||+|+||++|||||+|++++
T Consensus       151 ~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~~~  192 (193)
T d1tg6a1         151 NIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP  192 (193)
T ss_dssp             HHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSC
T ss_pred             HHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEccCC
Confidence            999999999999999999999999999999999999999876

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=2.2e-53  Score=363.26  Aligned_cols=177  Identities=31%  Similarity=0.499  Sum_probs=152.4

Q ss_pred             ccccc-cCCCCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHH
Q 025916           41 SPFAN-GSVSSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETE  108 (246)
Q Consensus        41 ~p~~~-~~~~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~  108 (246)
                      +|.|. ++.+|++.  .|||++||++|||       +++++.+++||    .+++.+||+|||||||        |+|++
T Consensus         1 ~p~v~~~~~~~~~~--~di~s~Ll~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~G--------G~v~~   70 (192)
T d1y7oa1           1 IPVVIEQTSRGERS--YDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG--------GSVSA   70 (192)
T ss_dssp             CCEECC-------C--EEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC--------BCHHH
T ss_pred             CCEEEEeCCCCcch--hhhhhHHhccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCC--------CCHHH
Confidence            57777 78888866  8999999999999       67899999998    5788999999999999        99999


Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccC--hHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ--ATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~--a~di~i~a~el~~~~~~i~  186 (246)
                      |++|||+|+++++||+|+|.|.|+|||++|++||++|+|+++|||++|+|||+++..|+  +.|++++++++.++++.+.
T Consensus        71 glai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~  150 (192)
T d1y7oa1          71 GLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLE  150 (192)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998885  6688999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      ++|+++||++.++|.++++||+||||+||++|||||+|+++
T Consensus       151 ~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         151 KILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            99999999999999999999999999999999999999975

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-50  Score=339.74  Aligned_cols=170  Identities=43%  Similarity=0.648  Sum_probs=162.8

Q ss_pred             CCCCCCCCCccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhc
Q 025916           49 SSDFSGLRLRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG  117 (246)
Q Consensus        49 ~~~~~~~~di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~  117 (246)
                      +|++.  +||||+|+++|||       +++++.++++|    .+++++||+|||||||        |++++|++|||+|+
T Consensus         2 ~~~~~--~di~s~L~~~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v~~g~~i~d~i~   71 (183)
T d1yg6a1           2 RGERS--FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQ   71 (183)
T ss_dssp             SSCCC--CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHH
T ss_pred             Cccch--hhHhHHHhccCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC--------ccHHHHHHHHHHHH
Confidence            57877  9999999999999       45788888888    5677899999999999        99999999999999


Q ss_pred             ccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 025916          118 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTP  197 (246)
Q Consensus       118 ~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~  197 (246)
                      +++.||+|+|.|.|+|||++|++||+||+|+++|||++|+|||+++..|++.|++++++++++.++.+.++|+++||++.
T Consensus        72 ~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~  151 (183)
T d1yg6a1          72 FIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSL  151 (183)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             hCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          198 EQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       198 e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +++.+++++|+||+|+||++|||||+|++.+
T Consensus       152 e~i~~~~~~d~~lta~EAl~~GliD~Ii~~~  182 (183)
T d1yg6a1         152 EQIERDTERDRFLSAPEAVEYGLVDSILTHR  182 (183)
T ss_dssp             HHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             HHHHHHhccCccccHHHHHHcCCCcEEeccC
Confidence            9999999999999999999999999999764

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.7e-50  Score=340.12  Aligned_cols=163  Identities=35%  Similarity=0.550  Sum_probs=148.4

Q ss_pred             CccccccCCCCC-------CCchhHHHHHH----hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEE
Q 025916           57 LRPDCLNPDSFC-------KSKPRSPVITM----YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT  125 (246)
Q Consensus        57 di~s~Ll~~RIi-------~~~a~~iiaqL----~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~T  125 (246)
                      .||++||++|||       ++++++++++|    .+++.+||+|||||||        |+|++|++|||+|++++.||+|
T Consensus         5 ~i~~~l~~~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v~~gl~i~d~i~~~~~~v~t   76 (179)
T d2cbya1           5 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIAT   76 (179)
T ss_dssp             HHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHhCCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCC--------CCHHHHHHHHHHHHhhccceee
Confidence            589999999999       66899999998    6788999999999999        9999999999999999999999


Q ss_pred             EEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 025916          126 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR  205 (246)
Q Consensus       126 i~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~  205 (246)
                      +|.|.|+|||++|+++|+||+|+++|||++|+|||++++.|+..|++++++++++.++.+.++|+++||++.++|.++++
T Consensus        77 ~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~  156 (179)
T d2cbya1          77 YAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSD  156 (179)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             ehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHcCCceEEccC
Q 025916          206 RPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       206 rd~~~sa~EAleyGLID~Ii~~  227 (246)
                      +|+||+|+||++|||||+|+++
T Consensus       157 ~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         157 RDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             TTCEEEHHHHHHHTSCSEECSC
T ss_pred             CCceecHHHHHHcCCCcEEecC
Confidence            9999999999999999999975

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.7e-48  Score=332.25  Aligned_cols=165  Identities=33%  Similarity=0.483  Sum_probs=149.7

Q ss_pred             CCccccccCCCCC-------CCchhHHHHHH---hhCCCCCEEEEEcCCCCCCCCCCCchHHHHHHHHHHhcccCCCEEE
Q 025916           56 RLRPDCLNPDSFC-------KSKPRSPVITM---YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT  125 (246)
Q Consensus        56 ~di~s~Ll~~RIi-------~~~a~~iiaqL---~ed~~k~I~LyINSpG~~~~~~~~G~v~~g~aIyd~m~~i~~~V~T  125 (246)
                      .|++++||++|||       +++++.+++||   ...+.++|+|||||||        |+|++|++|||+|+.++++|+|
T Consensus         9 ~d~~~~l~~~rii~l~g~Id~~~~~~~i~~l~~l~~~~~~~I~l~INS~G--------G~v~~g~ai~d~i~~~~~~v~t   80 (190)
T d2f6ia1           9 KDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHNDIKIYINSPG--------GSINEGLAILDIFNYIKSDIQT   80 (190)
T ss_dssp             HHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC--------BCHHHHHHHHHHHHHSSSCEEE
T ss_pred             hhHHHHHHcCcEEEECCeeCHHHHHHHHHHHHHHhccCCCCeEEEEeCch--------hhhhHHHHHHHHHHhhCCceEE
Confidence            6999999999999       66889999998   2223579999999999        9999999999999999999999


Q ss_pred             EEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 025916          126 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIR  205 (246)
Q Consensus       126 i~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~  205 (246)
                      +|.|.|+|||++|+++|++|+|+++|||++|+|||+++..|+.+|+++++++++++++.+.++|+++||++.++|+++++
T Consensus        81 v~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~  160 (190)
T d2f6ia1          81 ISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSD  160 (190)
T ss_dssp             EEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             EEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHcCCceEEccCC
Q 025916          206 RPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       206 rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ||+||+|+||++|||||+|++++
T Consensus       161 ~d~~l~a~EAl~~GliD~Ii~~~  183 (190)
T d2f6ia1         161 RDYYMNALEAKQYGIIDEVIETK  183 (190)
T ss_dssp             TTCEECHHHHHHHTSCSEECCCS
T ss_pred             CCeeecHHHHHHcCCCcEEcccC
Confidence            99999999999999999999864

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=8.1e-07  Score=79.23  Aligned_cols=123  Identities=21%  Similarity=0.275  Sum_probs=87.3

Q ss_pred             hhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeee
Q 025916           80 YEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  157 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMi  157 (246)
                      .+.-.-||..+|++||...  .-|..|...++-.....|-.++.|+.++++|.++|.|++.++.+  +..++++||++-.
T Consensus       147 a~~~~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~--d~v~m~~~a~~sv  224 (316)
T d2f9ya1         147 AERFKMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVG--DKVNMLQYSTYSV  224 (316)
T ss_dssp             HHHTTCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCC--SEEEECTTCEEES
T ss_pred             HHHcCcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhh--hHHHHHhhhHHhh
Confidence            4444689999999999653  44456777777777888888999999999999999999999887  5789999999875


Q ss_pred             ecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          158 KQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       158 Hqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                      -.|.+-    ++   +.++                .....++..+.+.    +|+++-+++|+||+|+..+-..
T Consensus       225 ispEg~----As---ILwk----------------d~~~a~eaAealk----lta~dL~~lgiIDeII~EP~gG  271 (316)
T d2f9ya1         225 ISPEGC----AS---ILWK----------------SADKAPLAAEAMG----IIRPRLKELKLIDSIIPEPLGG  271 (316)
T ss_dssp             SCHHHH----HH---HHSS----------------CSTTHHHHHHHHT----CSHHHHHTTTSCSCCCCCSTTC
T ss_pred             ccchhh----hh---Hhhc----------------cchhhcchHHHHh----hhhHHHHHcCchhhcccCCCcc
Confidence            444321    11   1100                1111122222222    7789999999999999776544

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.9e-05  Score=64.56  Aligned_cols=99  Identities=16%  Similarity=0.141  Sum_probs=70.1

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYA  190 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya  190 (246)
                      .++..|...+.||.+.+-|.|.+.|.-+++++  +.|++.++++|.+-...-|.....--..       .        +.
T Consensus        89 ~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~--D~~ia~~~a~f~~pe~~~G~~p~~g~~~-------~--------l~  151 (245)
T d2f6qa1          89 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLF--DAVYASDRATFHTPFSHLGQSPEGCSSY-------T--------FP  151 (245)
T ss_dssp             HHHHHHHSCCSCEEEEECSCEETHHHHGGGGC--SEEEEETTCEEECCTGGGTCCCCTTHHH-------H--------HH
T ss_pred             HHHhhhhhcCCceEEEECCccccccccchhhh--hhhhhhccCeEecccccCCCCccccchh-------h--------cc
Confidence            56677888899999999999999999999988  5899999999876444433221111111       1        11


Q ss_pred             HHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          191 KHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       191 ~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +..  ......+++-....++|+||+++||||+|++..
T Consensus       152 ~~~--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (245)
T d2f6qa1         152 KIM--SPAKATEMLIFGKKLTAGEACAQGLVTEVFPDS  187 (245)
T ss_dssp             HHH--CHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred             ccc--ccchhhhhcccccccccccccccccccccCCcc
Confidence            111  233445555567889999999999999998654

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.4e-05  Score=66.62  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      .....++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+.....|..-..--..              
T Consensus        86 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~G~~p~~g~~~--------------  149 (266)
T d1hzda_          86 SKIRAVINDIANLPVPTIAAIDGLALGGGLELALAC--DIRVAASSAKMGLVETKLAIIPGGGGTQ--------------  149 (266)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHS--SEEEEETTCEEECCGGGGTCCCCSSHHH--------------
T ss_pred             hHHHHHHHHHhcCCcccccccccccccccceecccc--ceeeecCCcEEeecccceeecCCcccee--------------
Confidence            345567888888999999999999999999999999  5799999999865444333211110111              


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                       .+.+..  ......+++-....++|+||+++||||+|++...
T Consensus       150 -~l~~~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  189 (266)
T d1hzda_         150 -RLPRAI--GMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ  189 (266)
T ss_dssp             -HHHHHH--CHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCT
T ss_pred             -eehhhh--HHHHHHhhhccCCccCHHHhhcccccccccChhh
Confidence             011111  2334444554579999999999999999997654

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.81  E-value=1.5e-05  Score=67.40  Aligned_cols=105  Identities=16%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      .....++..|...+.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+..|.... |-..+..            ..
T Consensus        83 ~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~--D~~ia~~~a~f~~~~pe~~~-Gl~p~~g------------~~  147 (249)
T d1sg4a1          83 KAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTC--DYRILADNPRYCIGLNETQL-GIIAPFW------------LK  147 (249)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTS--SEEEEECCTTCCBSCCGGGG-TCCCCHH------------HH
T ss_pred             hhhHHHHHhhhcCccccchhhccccccccccccccc--ccceeecccccccccccccc-ccccccc------------cc
Confidence            444467778888899999999999999999999999  58999999999887776432 2111110            00


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..+.+..|  .....+++-....++++||+++||||+|.+..
T Consensus       148 ~~l~~~iG--~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~  187 (249)
T d1sg4a1         148 DTLENTIG--HRAAERALQLGLLFPPAEALQVGIVDQVVPEE  187 (249)
T ss_dssp             HHHHHHHC--HHHHHHHHHHTCCBCHHHHHHHTSSSEEECGG
T ss_pred             cccccccc--cccccccccccccccHHHHHhhccccccCChH
Confidence            11222222  22333444446779999999999999999643

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=97.68  E-value=0.00011  Score=61.29  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHH
Q 025916          108 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       108 ~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      ....++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|.+-....|..   .+... . .+.+       
T Consensus        82 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~G~~---p~~g~-~-~l~~-------  147 (230)
T d2a7ka1          82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMF--DQRLMASTANFVMPELKHGIG---CSVGA-A-ILGF-------  147 (230)
T ss_dssp             HHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGGTCC---CHHHH-H-HHHH-------
T ss_pred             hhhhhhhcccchhcceeeecccccccccccchhcc--chhhccccchhhhcccccccc---ccccc-c-cccc-------
Confidence            44567788888899999999999999999999999  589999999886533333322   22221 0 1111       


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                          ..  ......+++-.+..|+++||+++||||+|.+..
T Consensus       148 ----~i--G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  182 (230)
T d2a7ka1         148 ----TH--GFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESS  182 (230)
T ss_dssp             ----HH--CHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHH
T ss_pred             ----cc--ccccccccccccccchHHHHHHhhhcccCCChH
Confidence                11  222233333346788999999999999998653

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=4.2e-05  Score=65.00  Aligned_cols=101  Identities=11%  Similarity=-0.026  Sum_probs=69.1

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ...++..|..++.||.+.+-|.|.+.|..|++++  +-|++.++++|.+.....|.....--..       .        
T Consensus        92 ~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~~~~~-------~--------  154 (263)
T d1wz8a1          92 ARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAA--DIAVVGKGTRLLDGHLRLGVAAGDHAVL-------L--------  154 (263)
T ss_dssp             HHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTSCCTTTHHH-------H--------
T ss_pred             hhHHHHHhhhhhcceeeecccccccccccccccc--cccccccccccccccccccccccccccc-------c--------
Confidence            3456777888899999999999999999999998  4799999999866444333221111100       0        


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +.+..  ......+++-.+..++++||+++||||+|.+..
T Consensus       155 l~~~~--G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~  192 (263)
T d1wz8a1         155 WPLLV--GMAKAKYHLLLNEPLTGEEAERLGLVALAVEDE  192 (263)
T ss_dssp             THHHH--CHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGG
T ss_pred             ccccc--ccchhhhhcccccccchhHHHhcCCcccccchh
Confidence            11111  222333444456789999999999999998653

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00011  Score=62.16  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=69.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..++..|...+.||.+.+-|.|.+.|..+++++  +.|++.++++|-+.....|.. | -.+-.                
T Consensus        88 ~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~----------------  149 (258)
T d2fw2a1          88 KNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC--DLVWANEKAWFQTPYTTFGQSPDGCSSIT----------------  149 (258)
T ss_dssp             HHHHHHHHHCCSCEEEEECSCEETHHHHTGGGS--SEEEEETTCEEECCHHHHTCCCCTTHHHH----------------
T ss_pred             HHHHHhhhccceeeeeecccccccccccccccc--cccceecccceeecccccccccccccccc----------------
Confidence            345667788899999999999999999999999  479999999886543332321 1 11110                


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       +.+..  ......+++-.+..++++||+++||||+|++..
T Consensus       150 -l~r~i--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  187 (258)
T d2fw2a1         150 -FPKMM--GKASANEMLIAGRKLTAREACAKGLVSQVFLTG  187 (258)
T ss_dssp             -HHHHH--CHHHHHHHHTTCCEEEHHHHHHTTSCSEEECST
T ss_pred             -chhhc--CccccchhhccCccccccccccccccccccccc
Confidence             11111  233344455557899999999999999998754

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.63  E-value=9.9e-05  Score=64.39  Aligned_cols=98  Identities=17%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcc-c-ChHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE-G-QATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~-G-~a~di~i~a~el~~~~~~i~~  187 (246)
                      ..++..|..++.||.+.+-|.|.+.|.-|++++  +.|++.++++|-+.....|.. | -.+-         .       
T Consensus        93 ~~~~~~l~~~~kPvIaav~G~a~GgG~elal~c--D~ria~~~a~f~~pe~~~Gl~P~~gg~~---------~-------  154 (310)
T d1wdka4          93 NKIFSDFEDLNVPTVAAINGIALGGGLEMCLAA--DFRVMADSAKIGLPEVKLGIYPGFGGTV---------R-------  154 (310)
T ss_dssp             HHHHHHHHTCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECGGGGGTCCCCSSHHH---------H-------
T ss_pred             HHHHHHhhcCCccceeeccccccccccccchhh--hhhhccccceecccccccCCCccccchh---------h-------
Confidence            457788888999999999999999999999999  589999999876544333321 1 1111         0       


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       +.+..  ......+++-....++++||+++||||+|++..
T Consensus       155 -L~r~i--G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~  192 (310)
T d1wdka4         155 -LPRLI--GVDNAVEWIASGKENRAEDALKVSAVDAVVTAD  192 (310)
T ss_dssp             -HHHHH--CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGG
T ss_pred             -hhhhh--hhhhhhhhhccccccCHHHHhhccCccEEccHH
Confidence             01111  222333344446789999999999999998754

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=97.63  E-value=7.8e-05  Score=62.23  Aligned_cols=101  Identities=10%  Similarity=0.036  Sum_probs=71.4

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKL  188 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~i  188 (246)
                      ...++..|...+.||.+.+-|.|.+.|..|.+++  +.|++.++++|.++....+..+   ...             ...
T Consensus        83 ~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~--D~ria~~~a~~~~~e~~~g~~~---~~~-------------~~~  144 (253)
T d1uiya_          83 LMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALAC--DLVVMDEEARLGYTEVKIGFVA---ALV-------------SVI  144 (253)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECCHHHHTCCC---HHH-------------HHH
T ss_pred             hhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhh--hhhhhhhhhHHhhhhccccccc---ccc-------------hhh
Confidence            3556677888899999999999999999999999  4899999999877654433321   100             001


Q ss_pred             HHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          189 YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       189 ya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                      +.+..  ......+++-....++++||+++||||+|.+..+
T Consensus       145 l~~~~--g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~  183 (253)
T d1uiya_         145 LVRAV--GEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGK  183 (253)
T ss_dssp             HHHHS--CHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTC
T ss_pred             hhccc--CHHHHHHHhhcCcCCCHHHHHHhCCCcccccccc
Confidence            11222  3333444444468899999999999999986653

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=97.60  E-value=8.2e-05  Score=63.19  Aligned_cols=99  Identities=14%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             HHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          110 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       110 ~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      ..+++.|..++.||.+.+-|.|.+.|..|++++  +.|++.+++++.+.....+.....--.....+-+-          
T Consensus        90 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~--D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig----------  157 (269)
T d1nzya_          90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLAS--DMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG----------  157 (269)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH----------
T ss_pred             HHHHHHHHhhcchhehhhhhhcCCCceeeeecc--cHhhhhhhhhhcccccccccccccccccccccccC----------
Confidence            356677788899999999999999999999999  58999999998775554333211111110011010          


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYT  227 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~  227 (246)
                             .....+++-...-++|+||+++||||+|.+.
T Consensus       158 -------~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~  188 (269)
T d1nzya_         158 -------MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK  188 (269)
T ss_dssp             -------HHHHHHHHHHCCCBCHHHHHHHTSCSCEECH
T ss_pred             -------hhhhhhccccccccchhHHHHcCCccccccc
Confidence                   1111223333567899999999999999864

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=0.00013  Score=61.76  Aligned_cols=99  Identities=15%  Similarity=0.199  Sum_probs=68.5

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc-ccChHHHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELVKLY  189 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~-~G~a~di~i~a~el~~~~~~i~~iy  189 (246)
                      .+++.|...+.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+.....|. .+...-                ..+
T Consensus        98 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~--D~ria~~~a~f~~pe~~~Gl~p~~~~~----------------~~~  159 (275)
T d1dcia_          98 KTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC--DIRYCTQDAFFQVKEVDVGLAADVGTL----------------QRL  159 (275)
T ss_dssp             HHHHHHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGGTSCCCSSHH----------------HHG
T ss_pred             HHHHHHHhcCCCEEEEEeeEeehhhHHHHhhc--CchhhccCccccchhcccccccccccc----------------ccc
Confidence            57788999999999999999999999999999  58999999998754333332 111000                011


Q ss_pred             HHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          190 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       190 a~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .+..| ......+++-.+..++++||++.||||+|.+..
T Consensus       160 ~~~~g-~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~  197 (275)
T d1dcia_         160 PKVIG-NRSLVNELTFTARKMMADEALDSGLVSRVFPDK  197 (275)
T ss_dssp             GGTCS-CHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSH
T ss_pred             ccccc-cccccccccccccccchhhhccCCCceeeeehh
Confidence            11111 112222344447889999999999999998654

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=4.4e-05  Score=65.99  Aligned_cols=129  Identities=19%  Similarity=0.308  Sum_probs=82.3

Q ss_pred             CCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCceeeee
Q 025916           83 VEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTIMIK  158 (246)
Q Consensus        83 ~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~iMiH  158 (246)
                      -.=||...+|+||..-  .-|.-|-+-.+-.+..++...+.|..|+++|.++|.|.+-+++..  ....++.|++++..-
T Consensus       101 ~~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm  180 (264)
T d1vrga2         101 FNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVM  180 (264)
T ss_dssp             TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS
T ss_pred             hCCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEec
Confidence            3578999999999663  223347788889999999999999999999999998886666422  356777888887655


Q ss_pred             cCCcCcc-cChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          159 QPIGRIE-GQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       159 qp~~~~~-G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .|.+... ....+++.. ++-...++.+.+.+              .  +..-++-.|.+.|+||.|+++.
T Consensus       181 ~pe~aa~v~~~~~l~~~-~~~~~~~~~~~~~~--------------~--e~~~~~~~aa~~g~iD~VIdP~  234 (264)
T d1vrga2         181 GPEGAANIIFKREIEAS-SNPEETRRKLIEEY--------------K--QQFANPYIAASRGYVDMVIDPR  234 (264)
T ss_dssp             CHHHHHHHHTHHHHHHS-SCHHHHHHHHHHHH--------------H--HHTSSHHHHHHTTSSSEECCGG
T ss_pred             CHHHhhhhhhhhhhhhh-hCcHHHHHHHHHHH--------------H--HHhcCHHHHHHcCCCCeeECHH
Confidence            4443211 011111110 00011111111111              1  1234688999999999999765

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=0.00019  Score=60.60  Aligned_cols=102  Identities=15%  Similarity=0.029  Sum_probs=68.9

Q ss_pred             HHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccC-ceeeeecCCcCc-cc-ChHHHHHHHHHHHHHHHHH
Q 025916          109 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPIGRI-EG-QATDVEIARKEMKNVKAEL  185 (246)
Q Consensus       109 g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pn-s~iMiHqp~~~~-~G-~a~di~i~a~el~~~~~~i  185 (246)
                      ...+++.|..++.||...+-|.|.+.|..|++++  +.|++.+. +.|.+.....|. -+ -.+-               
T Consensus        97 ~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~--D~~ia~~~~~~~~~pe~~lGl~p~~g~~~---------------  159 (266)
T d1pjha_          97 NVYVTDAFIKHSKVLICCLNGPAIGLSAALVALC--DIVYSINDKVYLLYPFANLGLITEGGTTV---------------  159 (266)
T ss_dssp             HHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHS--SEEEESSTTCEEECCHHHHTCCCCTTHHH---------------
T ss_pred             HHHHHHHHHhcchhhhhhhhcccccccccchhcc--chhhhhhcccccccccccccccccccccc---------------
Confidence            3457778889999999999999999999999999  47998765 565543222221 11 1110               


Q ss_pred             HHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCCCC
Q 025916          186 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP  231 (246)
Q Consensus       186 ~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~~~  231 (246)
                        .+.+..  ......+++-....++++||+++||||+|.+.+...
T Consensus       160 --~l~r~~--g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~  201 (266)
T d1pjha_         160 --SLPLKF--GTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSN  201 (266)
T ss_dssp             --HHHHHH--CHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTC
T ss_pred             --cccccc--ccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhh
Confidence              112222  223334444457889999999999999998766443

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.49  E-value=5.9e-05  Score=65.21  Aligned_cols=130  Identities=22%  Similarity=0.256  Sum_probs=82.8

Q ss_pred             CCCCEEEEEcCCCCCCC--CCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCceeeee
Q 025916           83 VEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTIMIK  158 (246)
Q Consensus        83 ~~k~I~LyINSpG~~~~--~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~iMiH  158 (246)
                      -.=||...+|+||..-+  -|.-|-+-.+-.++.++...+.|..|+++|.+++.|++-++++.  ...+++.|++++-.-
T Consensus       101 ~~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vM  180 (264)
T d1on3a2         101 FNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVM  180 (264)
T ss_dssp             TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESS
T ss_pred             cCCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhc
Confidence            46799999999997632  22347788899999999999999999999999998887776542  245677777777544


Q ss_pred             cCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          159 QPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       159 qp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      .|.+.     ..+- +.+++....+.-..        ..+++++..+  .+-+|-.|.+.|.||.||++.
T Consensus       181 g~Ega-----a~v~-~~~el~a~~~~~~~--------~~~~~~e~~~--~~~~p~~aA~~g~iD~VIdP~  234 (264)
T d1on3a2         181 GAEGA-----ANVI-FRKEIKAADDPDAM--------RAEKIEEYQN--AFNTPYVAAARGQVDDVIDPA  234 (264)
T ss_dssp             CHHHH-----HHHH-THHHHHHSSCHHHH--------HHHHHHHHHH--HHSSHHHHHHTTSSSEECCGG
T ss_pred             cHHHH-----HHHH-Hhhhhhhhhhhhhh--------hHHHHHHHHH--HhcCHHHHHHcCCCCeeECHH
Confidence            44322     1110 11111111110000        0112222222  345688999999999999765

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=7.4e-05  Score=62.63  Aligned_cols=97  Identities=14%  Similarity=0.127  Sum_probs=66.0

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCc---ccChHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~---~G~a~di~i~a~el~~~~~~i~~  187 (246)
                      .+++.|..++.||.+.+-|.|.+.|..|.++++  -|++.++++|.+-....|.   .|-..-+.               
T Consensus        88 ~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~---------------  150 (260)
T d1mj3a_          88 SHWDHITRIKKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEILLGTIPGAGGTQRLT---------------  150 (260)
T ss_dssp             CGGGGGGGCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGGGGTCCCCSSTTTHHH---------------
T ss_pred             HHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCC--EEEEcCCCEEECchhccCcCCcccHHHHHH---------------
Confidence            345677778899999999999999999999994  7999999998764333332   11111111               


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK  229 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~~  229 (246)
                         +..  ......+++-....++++||+++||||+|.+...
T Consensus       151 ---~~i--g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~  187 (260)
T d1mj3a_         151 ---RAV--GKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVET  187 (260)
T ss_dssp             ---HHH--CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTT
T ss_pred             ---HHh--CHHHHHHHHHcCcccCchhhccCCCceeeecccc
Confidence               111  1122233333357789999999999999987654

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00018  Score=60.77  Aligned_cols=103  Identities=16%  Similarity=0.185  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCCcCcccChHHHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  186 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~~~~~G~a~di~i~a~el~~~~~~i~  186 (246)
                      .....+++.|..++.||.+.+-|.|.+.|..|++++  +.|++.++++|-+-.+..+......-.               
T Consensus        83 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~~~~pe~~~Gl~~~~~~~---------------  145 (261)
T d1ef8a_          83 DPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS--DLIIAASTSTFSMTPVNLGVPYNLVGI---------------  145 (261)
T ss_dssp             SHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHHTCCCCHHHH---------------
T ss_pred             cchhhhHHHHHhCchhhhhcccccccchhhhhhhhh--hhhhhhHhHHHhhhhcccccccccccc---------------
Confidence            345688999999999999999999999999999999  589999999875433332221111110               


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          187 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       187 ~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      ..+.+.  .......+++-....++|+||+++||||+|.+..
T Consensus       146 ~~l~r~--~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~  185 (261)
T d1ef8a_         146 HNLTRD--AGFHIVKELIFTASPITAQRALAVGILNHVVEVE  185 (261)
T ss_dssp             HTTSSS--SCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHH
T ss_pred             cccccc--cCccccccccccCceEcHHHHHHcCCcceeeech
Confidence            001111  1222333344446789999999999999998654

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.15  E-value=0.00063  Score=59.52  Aligned_cols=140  Identities=15%  Similarity=0.193  Sum_probs=82.7

Q ss_pred             CCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeec
Q 025916           82 DVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  159 (246)
Q Consensus        82 d~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHq  159 (246)
                      .-.=||...+|+||..-  .-|.-|-+-.+-.+..++...+.|..|+++|.+++.|.+.+++..     ..|...+.+.+
T Consensus       116 ~~~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~-----~~~~~~~~~aw  190 (299)
T d1pixa3         116 RDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQ-----GNDTNAFSIGT  190 (299)
T ss_dssp             HTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTT-----CTTTEEEEEEC
T ss_pred             HcCCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccccccccccccCc-----cCcccceecCC
Confidence            33568999999999553  224457888889999999999999999999999998776555432     12333444445


Q ss_pred             CCc--Cccc--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh----cC-CCccCHHHHHHcCCceEEccCCCC
Q 025916          160 PIG--RIEG--QATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADI----RR-PKYFSPSEAVEYGIIDKVLYTEKS  230 (246)
Q Consensus       160 p~~--~~~G--~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~----~r-d~~~sa~EAleyGLID~Ii~~~~~  230 (246)
                      |.+  +..|  ++..+ .+.+++.+.+         .-++..++.++.+    +. ..-.++.+|.+.|.||.||++.  
T Consensus       191 P~aeigvMg~E~aa~v-l~~~el~~~~---------~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IIDP~--  258 (299)
T d1pixa3         191 AATEIAVMNGETAATA-MYSRRLAKDR---------KAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMN--  258 (299)
T ss_dssp             TTCEEESSCHHHHHHH-HHHHHHHHHH---------HTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTT--
T ss_pred             Cccccccccchhhhee-ehhhhhhhhh---------hhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeECHH--
Confidence            542  2222  12222 1223332221         1122211111111    10 0115788999999999999865  


Q ss_pred             CCCcchhhH
Q 025916          231 PEDHGVVSD  239 (246)
Q Consensus       231 ~~~~~~~~~  239 (246)
                       +.|.+...
T Consensus       259 -dTR~~L~~  266 (299)
T d1pixa3         259 -KIRGYVEA  266 (299)
T ss_dssp             -THHHHHHH
T ss_pred             -HHHHHHHH
Confidence             34554433

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.00063  Score=58.28  Aligned_cols=97  Identities=10%  Similarity=0.064  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCc-eeeeecCCcCc-c-cChHHHHHHHHHHHHHHHHHHH
Q 025916          111 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSS-TIMIKQPIGRI-E-GQATDVEIARKEMKNVKAELVK  187 (246)
Q Consensus       111 aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns-~iMiHqp~~~~-~-G~a~di~i~a~el~~~~~~i~~  187 (246)
                      .++..|..++.||.+.+-|.|.+.|..|++++  +.|++.+.+ +|.+.....|. - +.....                
T Consensus       121 ~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~--D~~ia~~~~~~f~~pe~~~Gl~p~~~~~~~----------------  182 (297)
T d1q52a_         121 EVQRLIRFMPKVVICLVNGWAAGGGHSLHVVC--DLTLASREYARFKQTDADVGSFDGGYGSAY----------------  182 (297)
T ss_dssp             HHHHHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECCGGGGTCCCCSTTTHH----------------
T ss_pred             HHHHHHHhcCCeEEEEEcceeeeccchhhhhh--hccccccccccceeeeeccccccccccccc----------------
Confidence            56777888899999999999999999999998  479998755 56555444442 1 122221                


Q ss_pred             HHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          188 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       188 iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                       +.+..  ......+++-....++++||+++||||+|++..
T Consensus       183 -L~r~i--G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~  220 (297)
T d1q52a_         183 -LARQV--GQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHA  220 (297)
T ss_dssp             -HHHHH--CHHHHHHHHHHCCEECHHHHHHHTSCSEEECGG
T ss_pred             -ccccc--CccceeeccccccccchHhhhhhccccccCchH
Confidence             11111  222333444447899999999999999998654

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=97.03  E-value=0.0011  Score=55.68  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCceeeeecCC--cCcccChHHHHHHHHHHHHHHHH
Q 025916          107 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIEGQATDVEIARKEMKNVKAE  184 (246)
Q Consensus       107 ~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~iMiHqp~--~~~~G~a~di~i~a~el~~~~~~  184 (246)
                      .....++..|..++.||.+.+-|.|.+ |..+++++  +.|++.++++|... |.  .+.....--..            
T Consensus        92 ~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~--D~ria~~~a~f~~~-pe~~~g~~p~~g~~~------------  155 (249)
T d1szoa_          92 FEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMS--DIVLAAESATFQDG-PHFPSGIVPGDGAHV------------  155 (249)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTS--SEEEEETTCEEECT-TSGGGTCCCTTTHHH------------
T ss_pred             hhhhhhhhhcccCcccceeeecccccc-cccccccc--ccccccCCcEEEEe-ecccccccccccccc------------
Confidence            345677888888999999888887766 55666666  58999999998632 22  22111110011            


Q ss_pred             HHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          185 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       185 i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                         .+.+..  ......+++-.+..++++||+++||||+|.+..
T Consensus       156 ---~l~r~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  194 (249)
T d1szoa_         156 ---VWPHVL--GSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ  194 (249)
T ss_dssp             ---HHHHHH--CHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHH
T ss_pred             ---cccccc--CccceeeecccCCCCCHHHHHHhCCcCcccCHH
Confidence               111222  223334455457889999999999999998653

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.94  E-value=0.00017  Score=62.16  Aligned_cols=133  Identities=17%  Similarity=0.299  Sum_probs=82.2

Q ss_pred             hCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhcc--cCCcEEeccCceee
Q 025916           81 EDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG--AKGNRAALPSSTIM  156 (246)
Q Consensus        81 ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG--~kgkR~a~Pns~iM  156 (246)
                      +.-.=||...+|+||..-  ..|.-|-+-.+-.+..++...+.|..|+++|.+++.|.+.+++.  .....++.|++++-
T Consensus        97 ~~~~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~g  176 (263)
T d1xnya2          97 DAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIA  176 (263)
T ss_dssp             HHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             HHhCCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhh
Confidence            333678999999999663  33445778889999999999999999999999999666555432  13567888888876


Q ss_pred             eecCCcCcccChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccCHHHHHHcCCceEEccCC
Q 025916          157 IKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTE  228 (246)
Q Consensus       157 iHqp~~~~~G~a~di~i~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~~sa~EAleyGLID~Ii~~~  228 (246)
                      +=.|.+..     .+- +.+++.+.        .+.......++.+... +...++..+.+.|.||.|+.+.
T Consensus       177 vm~pe~aa-----~il-~~~~~~~a--------~~~~~~~~~~~~~~~~-~~~~~p~~aA~~g~iD~VIdP~  233 (263)
T d1xnya2         177 VMGAQGAV-----NIL-HRRTIADA--------GDDAEATRARLIQEYE-DALLNPYTAAERGYVDAVIMPS  233 (263)
T ss_dssp             SSCHHHHH-----HHH-THHHHHSC--------CTTCSSSHHHHHHHHH-HHHSSSHHHHHHTSSSEECCGG
T ss_pred             ccCHHHHH-----HHH-HHHHHhhh--------ccchHHHHHHHHHHHH-HHhcCHHHHHHcccCCcccCHH
Confidence            54443221     110 01111000        0000011122222111 2334677899999999999865

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=5.6e-05  Score=65.52  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             hCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEecccchHHHHHHhccc--CCcEEeccCceee
Q 025916           81 EDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA--KGNRAALPSSTIM  156 (246)
Q Consensus        81 ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~--kgkR~a~Pns~iM  156 (246)
                      +.-.=||...+|+||..-  .-|.-|-+-.+-.+..++...+.|..|+++|.+++.|.+.+++..  ....++.|++++-
T Consensus       102 ~~~~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~ig  181 (271)
T d2a7sa2         102 DCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA  181 (271)
T ss_dssp             HHTTCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE
T ss_pred             HHhCCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEe
Confidence            334679999999999653  223346688889999999999999999999999997766555421  2466777888775


Q ss_pred             eecC
Q 025916          157 IKQP  160 (246)
Q Consensus       157 iHqp  160 (246)
                      +=.|
T Consensus       182 vMgp  185 (271)
T d2a7sa2         182 VMGA  185 (271)
T ss_dssp             SSCH
T ss_pred             ecCH
Confidence            4333

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0096  Score=53.84  Aligned_cols=85  Identities=15%  Similarity=0.097  Sum_probs=59.0

Q ss_pred             HHhhCCCCCEEEEEcCCCCCC--CCCCCchHHHHHHHHHHhcccCCCEEEEEe--cccchHHHHHHhcccCC----cEEe
Q 025916           78 TMYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCV--GNAWGEAALLLGAGAKG----NRAA  149 (246)
Q Consensus        78 qL~ed~~k~I~LyINSpG~~~--~~~~~G~v~~g~aIyd~m~~i~~~V~Ti~~--G~AaS~aa~IlaaG~kg----kR~a  149 (246)
                      .|.+.-.-||.+..|.||++-  .-|.-|-+-.|-.|.+.+...+.|+.+++.  |.+.+ |+++.+.++..    ..|+
T Consensus       124 d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~G-Ga~vv~~~~~~~~~~~~yA  202 (404)
T d1uyra2         124 DFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRG-GSWVVVDPTINADQMEMYA  202 (404)
T ss_dssp             HHHTTSCCCEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEH-HHHHTTCGGGGTTTEEEEE
T ss_pred             HhhhccccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccch-hhhhcccCccCCccceEEE
Confidence            334444679999999999773  333347788999999999999999999996  55555 55555554321    1367


Q ss_pred             ccCceeeeecCCcC
Q 025916          150 LPSSTIMIKQPIGR  163 (246)
Q Consensus       150 ~Pns~iMiHqp~~~  163 (246)
                      -|++++-+-.|.+.
T Consensus       203 wP~a~~gVm~pEGa  216 (404)
T d1uyra2         203 DVNARAGVLEPQGM  216 (404)
T ss_dssp             ETTCEEESSCHHHH
T ss_pred             CCccccccCChhhh
Confidence            78888876666554

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=83.67  E-value=0.78  Score=38.78  Aligned_cols=80  Identities=8%  Similarity=0.036  Sum_probs=48.9

Q ss_pred             hhCCCCCEEEEEcCCCCCC-C-CCCCchHH-HHHHHHH--HhcccCCCEEEEEecccchHHHHHHhcccCCcEEeccCce
Q 025916           80 YEDVEKPIYLYINSTGTTK-G-GEKLGYET-EAFAIYD--VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSST  154 (246)
Q Consensus        80 ~ed~~k~I~LyINSpG~~~-~-~~~~G~v~-~g~aIyd--~m~~i~~~V~Ti~~G~AaS~aa~IlaaG~kgkR~a~Pns~  154 (246)
                      .....-|+...++|+|..- . -|.++... .|..+++  .|.....|+.++++|-|++.|++..+++  ....+.+++.
T Consensus       135 A~~~~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~--~~i~~~~~a~  212 (287)
T d1pixa2         135 AKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISP--TVIIAHEKAN  212 (287)
T ss_dssp             HHHHTCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHHHSS--SEEEEETTCE
T ss_pred             hhhcCCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCccccceeccccc--eeEEecCCeE
Confidence            4444678999999999331 0 01111111 1122332  2344567999999999999999876554  2345567888


Q ss_pred             eeeecCC
Q 025916          155 IMIKQPI  161 (246)
Q Consensus       155 iMiHqp~  161 (246)
                      +.+--|.
T Consensus       213 i~~~Gp~  219 (287)
T d1pixa2         213 MAVGGAG  219 (287)
T ss_dssp             EESCCCT
T ss_pred             EEEECHH
Confidence            8776664