Citrus Sinensis ID: 025919

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
MAFLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQVP
cHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEEEEEcccccccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEccccccccEEEEEEEccccEEEEccccccccccccEEEccccc
cHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccccccccccccccccEEcccEEEEEEEEccccEEEEcccccccccccccccccccc
MAFLGLLLLGILSLVSSVygqgwtdahatfygggdasgtmggacgygnlysegygtnTAALSTALfnngmscgacfeikcvndprwcrpgsifvtatnfcppnnalpnnaggwcnppqqhfdlsqPVFEQIAQYKagivpvsyrrvpcsrkggirftingHSYFNLVLITNvggagdvravsikgsrtdwqpmsrnwgqnwqsnsylngqSLSFKvttsdghtvvsnnvapagwsfgqtfsglqvp
MAFLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKgsrtdwqpmsRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVapagwsfgqtfsglqvp
MAFlgllllgilslvssvYGQGWTDAHATFYgggdasgtmggacgYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCppnnalpnnaGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQVP
**FLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQT*******
MAFLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQVP
MAFLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQVP
MAFLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiii
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
Q9C554250 Expansin-A1 OS=Arabidopsi yes no 0.995 0.98 0.821 1e-116
O80622253 Expansin-A15 OS=Arabidops no no 0.991 0.964 0.796 1e-114
Q9LDR9249 Expansin-A10 OS=Arabidops no no 0.991 0.979 0.795 1e-107
Q9FMA0255 Expansin-A14 OS=Arabidops no no 0.987 0.952 0.729 1e-104
Q0DHB7246 Expansin-A4 OS=Oryza sati yes no 0.991 0.991 0.730 1e-103
A2Y5R6246 Expansin-A4 OS=Oryza sati N/A no 0.991 0.991 0.730 1e-103
O22874253 Expansin-A8 OS=Arabidopsi no no 0.967 0.940 0.731 1e-102
Q40636251 Expansin-A2 OS=Oryza sati no no 0.902 0.884 0.774 1e-101
Q6ZGU9291 Expansin-A5 OS=Oryza sati no no 0.914 0.773 0.755 6e-99
Q38866255 Expansin-A2 OS=Arabidopsi no no 0.991 0.956 0.707 3e-98
>sp|Q9C554|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1 Back     alignment and function desciption
 Score =  418 bits (1074), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/246 (82%), Positives = 221/246 (89%), Gaps = 1/246 (0%)

Query: 1   MAFLGLLLLGIL-SLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTA 59
           + FL +  LG + S V+   G GW +AHATFYGGGDASGTMGGACGYGNLYS+GYGTNTA
Sbjct: 4   VTFLFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTA 63

Query: 60  ALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQ 119
           ALSTALFNNG+SCGACFEI+C ND +WC PGSI VTATNFCPPNNALPNNAGGWCNPPQQ
Sbjct: 64  ALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQ 123

Query: 120 HFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVR 179
           HFDLSQPVF++IAQY+AGIVPV+YRRVPC R+GGIRFTINGHSYFNLVLITNVGGAGDV 
Sbjct: 124 HFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVH 183

Query: 180 AVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQT 239
           +  +KGSRT WQ MSRNWGQNWQSNSYLNGQSLSFKVTTSDG T+VSNNVA AGWSFGQT
Sbjct: 184 SAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQT 243

Query: 240 FSGLQV 245
           F+G Q+
Sbjct: 244 FTGAQL 249
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|O80622|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2 Back     alignment and function description
>sp|Q9LDR9|EXP10_ARATH Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMA0|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|O22874|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1 Back     alignment and function description
>sp|Q40636|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZGU9|EXPA5_ORYSJ Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1 Back     alignment and function description
>sp|Q38866|EXPA2_ARATH Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
225425652246 PREDICTED: expansin-A1 [Vitis vinifera] 0.991 0.991 0.852 1e-121
255547365249 Alpha-expansin 15 precursor, putative [R 0.991 0.979 0.857 1e-120
225464253246 PREDICTED: expansin-A15 [Vitis vinifera] 0.991 0.991 0.848 1e-120
217384814250 alpha-expansin [Ziziphus jujuba] 0.991 0.976 0.849 1e-119
356508543248 PREDICTED: expansin-A15-like [Glycine ma 0.991 0.983 0.849 1e-119
451963244248 alpha-expansin 1 [Ammopiptanthus nanus] 0.991 0.983 0.837 1e-119
167860794250 expansin 2 [Dimocarpus longan] 0.991 0.976 0.849 1e-118
351630253247 expansin [Breonia chinensis] gi|35163028 0.991 0.987 0.836 1e-118
225457387248 PREDICTED: expansin-A1 isoform 1 [Vitis 0.943 0.935 0.880 1e-117
297733962300 unnamed protein product [Vitis vinifera] 0.943 0.773 0.880 1e-117
>gi|225425652|ref|XP_002272879.1| PREDICTED: expansin-A1 [Vitis vinifera] gi|147774852|emb|CAN71362.1| hypothetical protein VITISV_018609 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 228/244 (93%)

Query: 1   MAFLGLLLLGILSLVSSVYGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAA 60
           MA +GL L+G LS+VSSV+GQGW +AHATFYGGGDASGTMGGACGYGNLYS+GYGTNTAA
Sbjct: 1   MALVGLFLVGFLSMVSSVHGQGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAA 60

Query: 61  LSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQH 120
           LSTALFN+G+SCG+C+EI+CVNDP+WC PGSI VTATNFCPPNNAL NNAGGWCNPP QH
Sbjct: 61  LSTALFNSGLSCGSCYEIRCVNDPKWCLPGSIVVTATNFCPPNNALSNNAGGWCNPPLQH 120

Query: 121 FDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRA 180
           FDLS+PVF+ IAQ++AGIVPVSYRRVPCSR+GGIRFTINGHSYFNLVLITNVGGAGDV A
Sbjct: 121 FDLSEPVFQHIAQFRAGIVPVSYRRVPCSRRGGIRFTINGHSYFNLVLITNVGGAGDVHA 180

Query: 181 VSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF 240
           V+IKGSRT WQ +SRNWGQNWQSN+YLNGQSLSFKVTTSDGHTVVS N  PAGWSFGQTF
Sbjct: 181 VAIKGSRTGWQSLSRNWGQNWQSNTYLNGQSLSFKVTTSDGHTVVSYNCVPAGWSFGQTF 240

Query: 241 SGLQ 244
           SG Q
Sbjct: 241 SGAQ 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547365|ref|XP_002514740.1| Alpha-expansin 15 precursor, putative [Ricinus communis] gi|223546344|gb|EEF47846.1| Alpha-expansin 15 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225464253|ref|XP_002269517.1| PREDICTED: expansin-A15 [Vitis vinifera] gi|29421118|dbj|BAC66694.1| expansin [Vitis labrusca x Vitis vinifera] gi|147836492|emb|CAN77596.1| hypothetical protein VITISV_001302 [Vitis vinifera] gi|296088028|emb|CBI35311.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|217384814|gb|ACK43223.1| alpha-expansin [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|356508543|ref|XP_003523015.1| PREDICTED: expansin-A15-like [Glycine max] Back     alignment and taxonomy information
>gi|451963244|gb|AGF90535.1| alpha-expansin 1 [Ammopiptanthus nanus] Back     alignment and taxonomy information
>gi|167860794|gb|ACA05165.1| expansin 2 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|351630253|gb|AEQ55281.1| expansin [Breonia chinensis] gi|351630283|gb|AEQ55296.1| expansin [Breonia chinensis] Back     alignment and taxonomy information
>gi|225457387|ref|XP_002284858.1| PREDICTED: expansin-A1 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733962|emb|CBI15209.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.902 0.807 0.765 5.3e-95
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.918 0.872 0.743 7.8e-94
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.918 0.893 0.734 1.6e-93
TAIR|locus:2161028255 EXPA14 "expansin A14" [Arabido 0.918 0.886 0.694 6.7e-88
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.906 0.881 0.700 6e-87
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.906 0.864 0.657 1.5e-83
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.906 0.867 0.662 1e-82
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.906 0.874 0.665 1.7e-82
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.906 0.857 0.653 2.2e-82
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.906 0.851 0.666 7.4e-82
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 170/222 (76%), Positives = 184/222 (82%)

Query:    20 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIK 79
             G GW +AHATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFEI+
Sbjct:    24 GGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIR 83

Query:    80 CVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIV 139
             C ND +WC PGSI VTATNFC          GGWCNPPQQHFDLSQPVF++IAQY+AGIV
Sbjct:    84 CQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIV 143

Query:   140 PVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQ 199
             PV+YRRVPC R+GGIRFTINGHSYFNLVLITNVGGAGDV +  +KGSRT WQ MSRNWGQ
Sbjct:   144 PVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQ 203

Query:   200 NWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 241
             NWQSNSYLNGQSLSFKVTTSDG T+VSNNVA AGWSFGQTF+
Sbjct:   204 NWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFT 245
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0006949 "syncytium formation" evidence=IEP
GO:0009739 "response to gibberellin stimulus" evidence=TAS
GO:0010114 "response to red light" evidence=IEP
GO:0010119 "regulation of stomatal movement" evidence=IMP
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80622EXP15_ARATHNo assigned EC number0.79670.99180.9644nono
Q38864EXPA5_ARATHNo assigned EC number0.76230.86990.8392nono
Q38866EXPA2_ARATHNo assigned EC number0.70730.99180.9568nono
O48818EXPA4_ARATHNo assigned EC number0.74220.90650.8677nono
A2Y5R6EXPA4_ORYSINo assigned EC number0.73060.99180.9918N/Ano
O22874EXPA8_ARATHNo assigned EC number0.73170.96740.9407nono
Q9C554EXPA1_ARATHNo assigned EC number0.82110.99590.98yesno
Q40636EXPA2_ORYSJNo assigned EC number0.77470.90240.8844nono
O80932EXPA3_ARATHNo assigned EC number0.71660.96340.9045nono
Q9FMA0EXP14_ARATHNo assigned EC number0.72900.98780.9529nono
Q0DHB7EXPA4_ORYSJNo assigned EC number0.73060.99180.9918yesno
Q9LDR9EXP10_ARATHNo assigned EC number0.79500.99180.9799nono
Q852A1EXPA7_ORYSJNo assigned EC number0.72530.92680.8636nono
Q4PNY1EXP11_ORYSJNo assigned EC number0.72350.87800.8709nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-145
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-125
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 2e-54
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 7e-39
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 3e-29
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 8e-24
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 7e-06
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  405 bits (1043), Expect = e-145
 Identities = 198/246 (80%), Positives = 220/246 (89%), Gaps = 2/246 (0%)

Query: 1   MAFLGLLLLGILSLVSSV--YGQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNT 58
           M  LG  ++ +LS++  V  YG GWT AHATFYGGGDASGTMGGACGYGNLYS+GYGTNT
Sbjct: 1   MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 60

Query: 59  AALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQ 118
           AALSTALFNNG+SCGACFEIKCVND  WC PGSI +TATNFCPPN ALPNN GGWCNPPQ
Sbjct: 61  AALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQ 120

Query: 119 QHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDV 178
           QHFDLSQPVF++IAQYKAGIVPV YRRV C + GGIRFTINGHSYFNLVLITNVGGAGD+
Sbjct: 121 QHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDI 180

Query: 179 RAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQ 238
            AVSIKGS+++WQ MSRNWGQNWQSNSYLNGQ+LSFKVTTSDG TV+SNN AP+ W+FGQ
Sbjct: 181 VAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240

Query: 239 TFSGLQ 244
           T++G+Q
Sbjct: 241 TYTGMQ 246

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
PLN00050247 expansin A; Provisional 100.0
PLN00193256 expansin-A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.97
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.96
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.94
PLN00115118 pollen allergen group 3; Provisional 99.9
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.87
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.77
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 99.11
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.14
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 98.0
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.9
PRK10672361 rare lipoprotein A; Provisional 97.42
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 90.5
>PLN00050 expansin A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.1e-71  Score=484.08  Aligned_cols=245  Identities=80%  Similarity=1.416  Sum_probs=227.2

Q ss_pred             ChhhHHHHHHHHHhhcccc--CCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEE
Q 025919            1 MAFLGLLLLGILSLVSSVY--GQGWTDAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEI   78 (246)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~aT~Y~~~~~~~~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V   78 (246)
                      |.-|+.-++.+|+++--.+  ..+|..++|||||+++++++++|||||+++..++++.++||+|+++|++|++||+||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV   80 (247)
T PLN00050          1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI   80 (247)
T ss_pred             CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence            5567766667776665554  46899999999999999899999999999888889999999999999999999999999


Q ss_pred             EEcCCCCCccCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcccCCEEEEEEEEeecCCCCceEEEE
Q 025919           79 KCVNDPRWCRPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTI  158 (246)
Q Consensus        79 ~c~~~p~~C~~gsv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~~~G~i~i~w~~V~C~~~gni~~~v  158 (246)
                      +|.+.+..|.+++|+|+|||+||++++.|+.+++||++++.|||||.+||.+||....|+++|+||||+|+++|||+|++
T Consensus        81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v  160 (247)
T PLN00050         81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI  160 (247)
T ss_pred             EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence            99876567988899999999999988888889999998899999999999999999999999999999999999999999


Q ss_pred             cCccceEEEEEEeeCCCcceeEEEEecCCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCe
Q 025919          159 NGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQ  238 (246)
Q Consensus       159 ~~~~~~~~v~v~n~~G~~~I~~Vev~~~~~~w~~m~r~~gn~W~~~~~~~g~p~~vRiT~~~G~~v~~~~vip~~w~~G~  238 (246)
                      ++++||++|+|.|++|+++|++|+|++++.+|++|+|+||++|+.++++.++||+||||+.+|+++++.||||++|++|+
T Consensus       161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~  240 (247)
T PLN00050        161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ  240 (247)
T ss_pred             cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence            99889999999999999999999999987789999999999999988888779999999999999999999999999999


Q ss_pred             EEeCCCC
Q 025919          239 TFSGLQV  245 (246)
Q Consensus       239 ~y~~~q~  245 (246)
                      +|+++||
T Consensus       241 ty~~~~f  247 (247)
T PLN00050        241 TYTGMQF  247 (247)
T ss_pred             eEecCcC
Confidence            9999987

>PLN00193 expansin-A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 6e-15
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 2e-14
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 32/240 (13%)
Query: 19  YGQGWTDAHATFYXXXXXXXXXXXXXXYG--NLYSEGYGTNTAALSTALFNNGMSCGACF 76
           Y   W  A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+
Sbjct: 15  YNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCY 74
Query: 77  EIKCVNDPRWC-RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-- 133
           E++C   P     P ++++T  N+                    HFDLS   F  +A+  
Sbjct: 75  EVRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPG 120
Query: 134 -----YKAGIVPVSYRRVPCSRKGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIK 184
                   GI+ V +RRV C    G +   +     N     VL+  V   GD+  + I+
Sbjct: 121 LNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQ 180
Query: 185 GSRT-DWQPMSRNWGQNWQSNS--YLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 241
              + +W+PM  +WG  W+ ++   L G   S ++T+  G  V++ +V PA W     ++
Sbjct: 181 DKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 3e-75
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 2e-73
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 7e-65
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 7e-34
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 1e-32
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 9e-32
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 3e-26
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  227 bits (579), Expect = 3e-75
 Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 30/244 (12%)

Query: 15  VSSVYGQGWTDAHATFYGGGDASGT--MGGACGYGNLYSEGYGTNTAALSTALFNNGMSC 72
           +++ Y   W  A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  C
Sbjct: 11  ITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGC 70

Query: 73  GACFEIKCVNDPRWC-RPGSIFVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQI 131
           G+C+E++C   P     P ++++T  N+ P                  HFDLS   F  +
Sbjct: 71  GSCYEVRCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSL 116

Query: 132 AQ-------YKAGIVPVSYRRVPCSRKGGIRFTINGHSYFN----LVLITNVGGAGDVRA 180
           A+          GI+ V +RRV C    G +   +     N     VL+  V   GD+  
Sbjct: 117 AKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVL 176

Query: 181 VSIKGSRT-DWQPMSRNWGQNWQSNSYLN-GQSLSFKVTTSDGHTVVSNNVAPAGWSFGQ 238
           + I+   + +W+PM  +WG  W+ ++        S ++T+  G  V++ +V PA W    
Sbjct: 177 MEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDA 236

Query: 239 TFSG 242
            ++ 
Sbjct: 237 VYTS 240
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.97
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.95
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.94
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.91
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.68
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.32
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.02
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 97.97
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 97.95
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.83
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.8
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.79
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 94.27
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=6.4e-64  Score=441.50  Aligned_cols=213  Identities=31%  Similarity=0.662  Sum_probs=197.2

Q ss_pred             cCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEEEEcCCCCCccCCeEEEEE
Q 025919           19 YGQGWTDAHATFYGGGDASGT--MGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTA   96 (246)
Q Consensus        19 ~~~~~~~g~aT~Y~~~~~~~~--~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~v~V   96 (246)
                      ...+|+.|+||||++++++++  .+|||||++++..|++.++||+|+++|++|++||+||||+|.+. ..|.+++|+|+|
T Consensus        15 ~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~-~~C~~~sv~V~V   93 (245)
T 2hcz_X           15 YNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEK-PECSGNPVTVYI   93 (245)
T ss_dssp             CCCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSS-SSBCSSCEEEEE
T ss_pred             cCCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCC-CccCCCCEEEEE
Confidence            467899999999999887777  78999999987778999999999999999999999999999875 469888999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhc-------ccCCEEEEEEEEeecCCCC--ceEEEEc--CccceE
Q 025919           97 TNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG--GIRFTIN--GHSYFN  165 (246)
Q Consensus        97 ~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~-------~~~G~i~i~w~~V~C~~~g--ni~~~v~--~~~~~~  165 (246)
                      ||+||+            .++.+|||||+.||++||.       .+.|+++|+||||+|+++|  ||+|+++  +++||+
T Consensus        94 tD~C~C------------~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~  161 (245)
T 2hcz_X           94 TDMNYE------------PIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYL  161 (245)
T ss_dssp             EEECCC------------TTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCC
T ss_pred             EeccCC------------CCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceE
Confidence            999984            3457999999999999999       6899999999999999983  7999998  589999


Q ss_pred             EEEEEeeCCCcceeEEEEecCC-CceeecCCCCCceEEeCCC--CCCcceEEEEEecCCcEEEEccccCCCCCCCeEEeC
Q 025919          166 LVLITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSY--LNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG  242 (246)
Q Consensus       166 ~v~v~n~~G~~~I~~Vev~~~~-~~w~~m~r~~gn~W~~~~~--~~g~p~~vRiT~~~G~~v~~~~vip~~w~~G~~y~~  242 (246)
                      +|||+|++|.++|++|||++++ ..|++|+|+|||+|+.+++  |.+ ||+||||+.+|++|+++||||++|++|++|++
T Consensus       162 avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty~~  240 (245)
T 2hcz_X          162 AVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYTS  240 (245)
T ss_dssp             CEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETTSCEEEESCSCCSSCCTTCEEEC
T ss_pred             EEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeCCcEEEEeeeecCCCCCCCEEeC
Confidence            9999999999999999999986 5899999999999999875  677 99999999999999999999999999999999


Q ss_pred             C-CC
Q 025919          243 L-QV  245 (246)
Q Consensus       243 ~-q~  245 (246)
                      + ||
T Consensus       241 ~~qf  244 (245)
T 2hcz_X          241 NVQF  244 (245)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            9 98
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 3e-48
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 8e-48
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 4e-35
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 3e-29
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  155 bits (393), Expect = 3e-48
 Identities = 35/172 (20%), Positives = 49/172 (28%), Gaps = 38/172 (22%)

Query: 22  GWTDAHATFYGGGDASGTMGGACGYGNL-----YSEGYGTNTAALSTALFNN------GM 70
           G + A  T Y          GACG G       +    G+  AA S   F++      G 
Sbjct: 13  GKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQ 67

Query: 71  SCGACFEIKCVNDPRWCRPG------SIFVTATNFCPPNNALPNNAGGWCNPPQQ----- 119
            CG C ++         + G      S     TN CP           WCN   Q     
Sbjct: 68  HCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI----YPNQDWCNQGSQYGGHN 123

Query: 120 ------HFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFN 165
                 H DL      Q+          ++  V C  +         +S + 
Sbjct: 124 KYGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG 174
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.92
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.74
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 91.95
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=2.1e-36  Score=244.60  Aligned_cols=123  Identities=36%  Similarity=0.704  Sum_probs=104.0

Q ss_pred             cccCCCceEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEeChhhhCCCCCCcceEEEEEcCCCCCccCCeEEE
Q 025919           17 SVYGQGWTDAHATFYGGGDASGT--MGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFV   94 (246)
Q Consensus        17 ~~~~~~~~~g~aT~Y~~~~~~~~--~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~gsv~v   94 (246)
                      ..+.++|++|+||||+.+++.++  .+|||||+++...|++.++||+|+.+|++|..||+||||+|.+ +..|.+++|+|
T Consensus        11 a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c~~~sv~V   89 (143)
T d1n10a2          11 ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGEPVVV   89 (143)
T ss_dssp             CBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTBCSCCEEE
T ss_pred             cccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcccCCCEEE
Confidence            34568999999999998876553  3799999998777889999999999999999999999999987 46798889999


Q ss_pred             EEeCCCCCCCCCCCCCCCCCCCCCCceecCHHHHHHhhcc-------cCCEEEEEEEEeecCCCC
Q 025919           95 TATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFEQIAQY-------KAGIVPVSYRRVPCSRKG  152 (246)
Q Consensus        95 ~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~ia~~-------~~G~i~i~w~~V~C~~~g  152 (246)
                      +|||.||+           |. +.+|||||++||.+||+.       +.|+++|+||||+|.++|
T Consensus        90 ~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          90 HITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            99999996           33 468999999999999985       679999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure