Citrus Sinensis ID: 025928

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Secondary Structure (PSIPRED)
ccccHHHHHccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccEEEEccccccccccccccccEEEEcccccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHccEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccccccccccccccccccccccEEEEEcccccHHccccHHHHHHHHHHHHHHHHHHccccHHHHHccccHHcccccccccccEEcccccEEEEEcccccccEEEEcccEEEEEEEcccccccEEEEEEccccccHHHcccHHHHHHHHcHHccHHHHccccccccccccHHHHHHHHHHHcccccEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHccEcc
Coil and Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhvsnikptQIVCRAQkqavqeddgsAVSRRLALTVLIGAAavgskvspadaaygesanvfgkpktntdflpyngdgfklsipskwnpskerefpgqvlryednfdsnsnvsviitptdkksitdygspeefLSKVDYLLGkqaysgktsseggfdpdaVATANIleasvrppyyFLSVLTrtadgdeggkLYICKAqagdkrwfkGTRKYVESTASSFSVA
Flexible Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhVSNIKPTQIVCRAQKqavqeddgsAVSRRLALTVLIGAAAVGSKVSPADAAYGesanvfgkpktnTDFLPYNGDGFklsipskwnpsKEREFPGQVLRyednfdsnsnvsviitptdkksitdygspEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICkaqagdkrwfkgTRKYVESTASSFSVA
Low Complexity Region (SEG)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Disordered region (IsUnstruct)
**********************************IVC**************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSI***************VLRYEDNF****NVSVIITPT****ITDYGSPEEFLSKVDYLLGKQAY************DAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKY***********
Disordered Region (DISOPRED)
**STQCFLH***********************************************ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQ****************VATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Disordered Region (DISEMBL)
MASTQCFLHHHAL***************NIKPTQIVCRA************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKYV**********
Disordered Region (DISPRO)
*********************************QIVCR*QKQAV*****SAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q9SLQ8	263	Oxygen-evolving enhancer	N/A	no	0.995	0.931	0.776	1e-111
Q7DM39	268	Oxygen-evolving enhancer	N/A	no	1.0	0.917	0.742	1e-106
P93566	260	Oxygen-evolving enhancer	N/A	no	0.979	0.926	0.732	1e-105
P16059	259	Oxygen-evolving enhancer	N/A	no	0.987	0.938	0.740	1e-105
P18212	265	Oxygen-evolving enhancer	N/A	no	0.995	0.924	0.721	1e-104
P29795	258	Oxygen-evolving enhancer	N/A	no	0.963	0.918	0.731	1e-103
Q42029	263	Oxygen-evolving enhancer	yes	no	0.991	0.927	0.728	1e-103
P12302	267	Oxygen-evolving enhancer	N/A	no	1.0	0.921	0.707	1e-103
O49080	264	Oxygen-evolving enhancer	N/A	no	0.995	0.928	0.713	1e-102
Q04127	266	Oxygen-evolving enhancer	N/A	no	0.995	0.921	0.707	1e-101

>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/264 (77%), Positives = 221/264 (83%), Gaps = 19/264 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGG
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGG 179

Query: 179 FDPDAVATANILEASVR----PPYYFLSVLTRTADGDEG------------GKLYICKAQ 222
           FDPDAVATANILEA+        YYF+SVLTRTADGDEG            GKLYICKAQ
Sbjct: 180 FDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQ 239

Query: 223 AGDKRWFKGTRKYVESTASSFSVA 246
           AGDKRWFKG RK+VE  ASSFSVA
Sbjct: 240 AGDKRWFKGARKFVEGAASSFSVA 263

May be involved in the regulation of photosystem II.
Cucumis sativus (taxid: 3659)

>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/268 (74%), Positives = 223/268 (83%), Gaps = 22/268 (8%)

Query: 1   MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAV-QEDDGSAV--SR 54
           MASTQCFLH HALS++ ART+   SSQR+VS++KP Q+VCRAQKQ+  QEDDG++V  SR
Sbjct: 1   MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60

Query: 55  RLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSK 114
           RLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK NTDFL YNGDGFKL +P+KWNPSK
Sbjct: 61  RLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSK 120

Query: 115 EREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTS 174
           E EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT 
Sbjct: 121 EVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTD 180

Query: 175 SEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDE------------GGKLYI 218
           SEGGF+  AVATAN+LE S        YY LSVLTRTADGDE            GGKLYI
Sbjct: 181 SEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYI 240

Query: 219 CKAQAGDKRWFKGTRKYVESTASSFSVA 246
           CKAQAGDKRWFKG RK+VE+ A+SFSVA
Sbjct: 241 CKAQAGDKRWFKGARKFVENAATSFSVA 268

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/262 (73%), Positives = 214/262 (81%), Gaps = 21/262 (8%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTL 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL IP+KWNPSKE EFPG
Sbjct: 59  LIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+
Sbjct: 119 QVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFE 178

Query: 181 PDAVATANILEASVR----PPYYFLSVLTRTADGDEG------------GKLYICKAQAG 224
             AVATAN+LEAS        YY+LSVLTRTADGDEG            GKLYICKAQAG
Sbjct: 179 SGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAG 238

Query: 225 DKRWFKGTRKYVESTASSFSVA 246
           DKRWFKG +K+VE+ A+SFS+A
Sbjct: 239 DKRWFKGAKKFVENAATSFSIA 260

May be involved in the regulation of photosystem II.

Solanum tuberosum (taxid: 4113)

>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/262 (74%), Positives = 210/262 (80%), Gaps = 19/262 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+V
Sbjct: 1   MASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSV 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGK KTNTD+LPYNGDGFKL +P+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQAG 224
            +AVA ANILE+S        YY +SVLTRTADGDEG            GKLYICKAQAG
Sbjct: 178 TNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAG 237

Query: 225 DKRWFKGTRKYVESTASSFSVA 246
           DKRWFKG RK+VE TASSFSVA
Sbjct: 238 DKRWFKGARKFVEDTASSFSVA 259

May be involved in the regulation of photosystem II.

Pisum sativum (taxid: 3888)

>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/266 (72%), Positives = 219/266 (82%), Gaps = 21/266 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGS---AVSRRL 56
           MASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ+  ++D     +VSRRL
Sbjct: 1   MASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRL 59

Query: 57  ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKER 116
           ALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE 
Sbjct: 60  ALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEV 119

Query: 117 EFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SE
Sbjct: 120 EYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSE 179

Query: 177 GGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEG------------GKLYICK 220
           GGF+ DAVA AN+LE S       PYY+LSVLTRTADG+EG            GKLYICK
Sbjct: 180 GGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICK 239

Query: 221 AQAGDKRWFKGTRKYVESTASSFSVA 246
           AQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 240 AQAGDKRWFKGAKKFVENTATSFSLA 265

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 215/264 (81%), Gaps = 27/264 (10%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGS--AVSRRLAL 58
           ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLAL
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLAL 54

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           T+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL +P+KWNPSKE E+
Sbjct: 55  TLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEY 114

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGG
Sbjct: 115 PGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGG 174

Query: 179 FDPDAVATANILEASVR----PPYYFLSVLTRTADGDEG------------GKLYICKAQ 222
           F+  AVAT N+LEAS        YY+LSVLTRTADGDEG            GKLYICKAQ
Sbjct: 175 FESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQ 234

Query: 223 AGDKRWFKGTRKYVESTASSFSVA 246
           AGDKRWFKG +K+VE+ A+SFS+A
Sbjct: 235 AGDKRWFKGAKKFVENAATSFSIA 258

May be involved in the regulation of photosystem II.

Solanum lycopersicum (taxid: 4081)

>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 224/265 (84%), Gaps = 21/265 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct: 59  LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEG
Sbjct: 119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEG 178

Query: 178 GFDPDAVATANILEASVRP----PYYFLSVLTRTADGDE------------GGKLYICKA 221
           GFD +AVATANILE+S +     PYY+LSVLTRTADGDE            GGKLYICKA
Sbjct: 179 GFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKA 238

Query: 222 QAGDKRWFKGTRKYVESTASSFSVA 246
           QAGDKRWFKG RK+VES A+SFSVA
Sbjct: 239 QAGDKRWFKGARKFVESAATSFSVA 263

May be involved in the regulation of photosystem II.

Arabidopsis thaliana (taxid: 3702)

>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/267 (70%), Positives = 217/267 (81%), Gaps = 21/267 (7%)

Query: 1   MASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQEDD--GSAVSRR 55
           MAST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   E +   S VSRR
Sbjct: 1   MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 60

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE
Sbjct: 61  LALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKE 120

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS 175
           +EFPGQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT S
Sbjct: 121 KEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDS 180

Query: 176 EGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYIC 219
           EGGFD   VA+AN+LE+S        YY ++VLTRTADGDEG            GKLYIC
Sbjct: 181 EGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYIC 240

Query: 220 KAQAGDKRWFKGTRKYVESTASSFSVA 246
           KAQAGDKRWFKG +K+VES  SSFSVA
Sbjct: 241 KAQAGDKRWFKGAKKFVESATSSFSVA 267

May be involved in the regulation of photosystem II.

Spinacia oleracea (taxid: 3562)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 213/265 (80%), Gaps = 20/265 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSS--SQRHVSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLA 57
           MAS+ CFL HHA ST PA TS   S R V  IKP+Q++CRAQK +   E+  +AVSRRLA
Sbjct: 1   MASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLA 59

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+LIG+AAVG+K++PA+AAYGE+ANVFGK KTNTDFLPY GDGF L IP+KWNPSKE E
Sbjct: 60  LTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVE 119

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           FPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEG
Sbjct: 120 FPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEG 179

Query: 178 GFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKA 221
           GFDPD+VATANILE S        YY +SVLTRTADGDEG            GKLYICKA
Sbjct: 180 GFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKA 239

Query: 222 QAGDKRWFKGTRKYVESTASSFSVA 246
           QAGDKRWFKG +K+VEST +SF+VA
Sbjct: 240 QAGDKRWFKGAKKFVESTTTSFNVA 264

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/267 (70%), Positives = 218/267 (81%), Gaps = 22/267 (8%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQ--AVQEDD--GSAVSRR 55
           MASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ +  A Q+D+    +VSRR
Sbjct: 1   MASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRR 59

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALT+LIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE
Sbjct: 60  LALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKE 119

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS 175
            E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT S
Sbjct: 120 VEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDS 179

Query: 176 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEG------------GKLYIC 219
           EGGF+ DAVA AN+LE S        YY+LS+LTRTADG+EG            GKLYIC
Sbjct: 180 EGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYIC 239

Query: 220 KAQAGDKRWFKGTRKYVESTASSFSVA 246
           KAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 240 KAQAGDKRWFKGAKKFVENTATSFSLA 266

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224085421	262	hypothetical protein POPTRDRAFT_818640 [	0.995	0.935	0.790	1e-114
225446775	259	PREDICTED: oxygen-evolving enhancer prot	0.987	0.938	0.790	1e-114
224062595	262	hypothetical protein POPTRDRAFT_551203 [	0.995	0.935	0.787	1e-113
255561128	265	Oxygen-evolving enhancer protein 2, chlo	1.0	0.928	0.784	1e-113
388513061	259	unknown [Lotus japonicus]	0.987	0.938	0.797	1e-110
388519835	259	unknown [Lotus japonicus]	0.987	0.938	0.797	1e-110
449460024	263	PREDICTED: oxygen-evolving enhancer prot	0.995	0.931	0.776	1e-109
388503344	259	unknown [Lotus japonicus]	0.987	0.938	0.793	1e-109
356526942	262	PREDICTED: oxygen-evolving enhancer prot	0.991	0.931	0.768	1e-109
356501429	258	PREDICTED: oxygen-evolving enhancer prot	0.983	0.937	0.763	1e-107

>gi|224085421|ref|XP_002307570.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa] gi|118488107|gb|ABK95873.1| unknown [Populus trichocarpa] gi|222857019|gb|EEE94566.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/263 (79%), Positives = 226/263 (85%), Gaps = 18/263 (6%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR T SSQR V+N+KPTQ+ CRAQKQAVQE+D  AVSRRLALT
Sbjct: 1   MASTSCFLHHHAL-TTPARSTPSSQRQVANLKPTQLACRAQKQAVQEEDNGAVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKT+TDFLPYNGDGFKLS+PSKWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTDTDFLPYNGDGFKLSVPSKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGF 179
           GQVLRYEDNFD+ SNVSV++ PTDKKSITDYGSPEEFLSKVD+LLGKQ+    T+SEGGF
Sbjct: 120 GQVLRYEDNFDATSNVSVMVIPTDKKSITDYGSPEEFLSKVDFLLGKQSSLFATASEGGF 179

Query: 180 DPDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQA 223
           DP+ VATANILE S        Y+FLSVLTRTADGDEG            GKLYICKAQA
Sbjct: 180 DPNTVATANILETSTPVVGGKQYFFLSVLTRTADGDEGGKHQLITATVKDGKLYICKAQA 239

Query: 224 GDKRWFKGTRKYVESTASSFSVA 246
           GDKRWFKG RK+VESTASSFSVA
Sbjct: 240 GDKRWFKGARKFVESTASSFSVA 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446775|ref|XP_002283048.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic [Vitis vinifera] gi|147787750|emb|CAN60827.1| hypothetical protein VITISV_001116 [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/262 (79%), Positives = 227/262 (86%), Gaps = 19/262 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MAST CFLHHHALST P R SS QR + +++P+Q+VCRAQKQA  EDDG+AVSRRLALTV
Sbjct: 1   MASTACFLHHHALST-PTRVSS-QRQLPSLRPSQLVCRAQKQAANEDDGAAVSRRLALTV 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAA+G+KV+PADAAYGE+ANVFGKPKTNTDFLPYNG+GFKLSIPSKWNPSKEREFPG
Sbjct: 59  LIGAAAIGTKVNPADAAYGEAANVFGKPKTNTDFLPYNGEGFKLSIPSKWNPSKEREFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVD+LLGKQA+ G  ++EGGFD
Sbjct: 119 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDFLLGKQAFFGN-ANEGGFD 177

Query: 181 PDAVATANILEASVR----PPYYFLSVLTRTADGDEG------------GKLYICKAQAG 224
            DAVATANILE+S       PYY ++VLTRTADGDEG            GKLYICK QAG
Sbjct: 178 ADAVATANILESSTTTVGGKPYYTITVLTRTADGDEGGKHQLITAAVADGKLYICKVQAG 237

Query: 225 DKRWFKGTRKYVESTASSFSVA 246
           DKRWFKG RKYVESTASSFS+A
Sbjct: 238 DKRWFKGARKYVESTASSFSIA 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062595|ref|XP_002300858.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa] gi|118487448|gb|ABK95552.1| unknown [Populus trichocarpa] gi|222842584|gb|EEE80131.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/263 (78%), Positives = 222/263 (84%), Gaps = 18/263 (6%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR TSSSQR V N+KP Q+VCRAQKQAVQE+D   VSRRLALT
Sbjct: 1   MASTACFLHHHAL-TTPARSTSSSQRQVVNLKPAQLVCRAQKQAVQEEDDGVVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKTNTDFLPYNGDGFKLS+P+KWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTNTDFLPYNGDGFKLSVPAKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGF 179
           GQVLRYEDNFD+ SN+SV++TPTD KSI DYGSPEEFLSKVDYLLGKQ+    TSSEGGF
Sbjct: 120 GQVLRYEDNFDATSNLSVMVTPTDTKSIADYGSPEEFLSKVDYLLGKQSSLFATSSEGGF 179

Query: 180 DPDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQA 223
           D + VATANILE S        YYFLSVLTRTADGDEG            GKLYICKAQA
Sbjct: 180 DTNTVATANILETSTPVIDGKQYYFLSVLTRTADGDEGGKHQLITATVKDGKLYICKAQA 239

Query: 224 GDKRWFKGTRKYVESTASSFSVA 246
           GDKRWFKG RK+VES ASSFSVA
Sbjct: 240 GDKRWFKGARKFVESAASSFSVA 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561128|ref|XP_002521576.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis] gi|223539254|gb|EEF40847.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/265 (78%), Positives = 229/265 (86%), Gaps = 19/265 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSS-SQRHVSNI-KPTQIVCRAQ-KQAVQEDDGSAVSRRLA 57
           MA+T CFLHH AL++TP R SS SQR VSN  KPTQ +CRA  KQ +QE+D S VSRRLA
Sbjct: 1   MATTGCFLHHPALTSTPNRLSSVSQRQVSNTTKPTQFICRASTKQPLQEEDLSLVSRRLA 60

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF+PYNGDGF+LS+PSKWNPSKERE
Sbjct: 61  LTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFMPYNGDGFQLSVPSKWNPSKERE 120

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           FPGQVLRYEDNFDSNSN+SV+ITPTDKKSITD+G+PEEFL+KVDYLLGKQAY GKT+SEG
Sbjct: 121 FPGQVLRYEDNFDSNSNLSVMITPTDKKSITDFGTPEEFLAKVDYLLGKQAYFGKTASEG 180

Query: 178 GFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEG------------GKLYICKA 221
           GFDP+AVATANIL++S +      YYFLSVLTRTADGDEG            GKLYICKA
Sbjct: 181 GFDPNAVATANILDSSTQVVGGKEYYFLSVLTRTADGDEGGKHQLITAAVKDGKLYICKA 240

Query: 222 QAGDKRWFKGTRKYVESTASSFSVA 246
           QAGDKRWFKG RK+VES ASSFSVA
Sbjct: 241 QAGDKRWFKGARKFVESAASSFSVA 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513061|gb|AFK44592.1| unknown [Lotus japonicus]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/262 (79%), Positives = 221/262 (84%), Gaps = 19/262 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQAG 224
            +AVA ANILE+S        YY +SVLTRTADGDEG            GKLYICKAQAG
Sbjct: 178 ANAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICKAQAG 237

Query: 225 DKRWFKGTRKYVESTASSFSVA 246
           DKRWFKG RK+VES ASSFSVA
Sbjct: 238 DKRWFKGARKFVESAASSFSVA 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519835|gb|AFK47979.1| unknown [Lotus japonicus]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/262 (79%), Positives = 221/262 (84%), Gaps = 19/262 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQAG 224
            +AVA ANILE+S        YY +SVLTRTADGDEG            GKLYICKAQAG
Sbjct: 178 TNAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICKAQAG 237

Query: 225 DKRWFKGTRKYVESTASSFSVA 246
           DKRWFKG RK+VES ASSFSVA
Sbjct: 238 DKRWFKGARKFVESAASSFSVA 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460024|ref|XP_004147746.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|449502131|ref|XP_004161551.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|11134156|sp|Q9SLQ8.1|PSBP_CUCSA RecName: Full=Oxygen-evolving enhancer protein 2, chloroplastic; Short=OEE2; AltName: Full=23 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=23 kDa thylakoid membrane protein; AltName: Full=OEC 23 kDa subunit; AltName: Full=OEC23; Flags: Precursor gi|6691487|dbj|BAA89317.1| 23kDa polypeptide of the oxygen-evolving complex of photosystem II [Cucumis sativus]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/264 (77%), Positives = 221/264 (83%), Gaps = 19/264 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGG
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGG 179

Query: 179 FDPDAVATANILEASVR----PPYYFLSVLTRTADGDEG------------GKLYICKAQ 222
           FDPDAVATANILEA+        YYF+SVLTRTADGDEG            GKLYICKAQ
Sbjct: 180 FDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQ 239

Query: 223 AGDKRWFKGTRKYVESTASSFSVA 246
           AGDKRWFKG RK+VE  ASSFSVA
Sbjct: 240 AGDKRWFKGARKFVEGAASSFSVA 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503344|gb|AFK39738.1| unknown [Lotus japonicus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/262 (79%), Positives = 220/262 (83%), Gaps = 19/262 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IK  QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKSNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTYSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQAG 224
            +AVA ANILE+S        YY +SVLTRTADGDEG            GKLYICKAQAG
Sbjct: 178 TNAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICKAQAG 237

Query: 225 DKRWFKGTRKYVESTASSFSVA 246
           DKRWFKG RK+VES ASSFSVA
Sbjct: 238 DKRWFKGARKFVESAASSFSVA 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526942|ref|XP_003532074.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/264 (76%), Positives = 222/264 (84%), Gaps = 20/264 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQE--DDGSAVSRRLAL 58
           MASTQCFLHHHAL TTP R +SSQR V + KP  IVC+AQKQ VQE  D  + VSRRLAL
Sbjct: 1   MASTQCFLHHHAL-TTPTR-ASSQRLVVSTKPNHIVCKAQKQVVQEGEDTTNIVSRRLAL 58

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAAVGSKV+PADAAYGE+ANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE E+
Sbjct: 59  TVLIGAAAVGSKVAPADAAYGEAANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEVEY 118

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDS SNV+V++T TDKKSITDYGSPEEFLS+VDYLLGKQA+ G+T +EGG
Sbjct: 119 PGQVLRYEDNFDSTSNVAVMVTATDKKSITDYGSPEEFLSQVDYLLGKQAFFGQTDAEGG 178

Query: 179 FDPDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQ 222
           FD +AVATANILE+S        YY L+VLTRTADGDEG            GKLYICKAQ
Sbjct: 179 FDSNAVATANILESSTPVIDGKQYYSLTVLTRTADGDEGGKHQLIAATVKDGKLYICKAQ 238

Query: 223 AGDKRWFKGTRKYVESTASSFSVA 246
           AGDKRWFKG R++VESTASSFSVA
Sbjct: 239 AGDKRWFKGARRFVESTASSFSVA 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501429|ref|XP_003519527.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/262 (76%), Positives = 220/262 (83%), Gaps = 20/262 (7%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTPAR S SQR + + KP Q+VC+AQKQ  ++ D S +SRRLALTV
Sbjct: 1   MASTQCFLHHHAL-TTPAR-SPSQRIMVSTKPNQLVCKAQKQ--EDIDVSPISRRLALTV 56

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKV PADAAYGE+ANVFGKPKT+TDFLPYNGDGFKLSIPSKWNPSKE E+ G
Sbjct: 57  LIGAAAVGSKVQPADAAYGEAANVFGKPKTDTDFLPYNGDGFKLSIPSKWNPSKEVEYTG 116

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QV+RYEDNFDS +NV V ITPTDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T +EGGFD
Sbjct: 117 QVVRYEDNFDSTTNVVVTITPTDKKSITDYGSPEEFLSKVDYLLGKQAFFGETQAEGGFD 176

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEG------------GKLYICKAQAG 224
           P+AVATANILE +       PYYFLSVLTRTADGDEG            GKL+ICKAQAG
Sbjct: 177 PNAVATANILETATPVIDGKPYYFLSVLTRTADGDEGGKHHIIRATVKDGKLFICKAQAG 236

Query: 225 DKRWFKGTRKYVESTASSFSVA 246
           DKRWFKG R++VES ASSFSVA
Sbjct: 237 DKRWFKGARRFVESAASSFSVA 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2033087	263	PSBP-1 "photosystem II subunit	0.991	0.927	0.728	5.2e-97
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	0.764	0.789	0.241	0.00024

TAIR|locus:2033087 PSBP-1 "photosystem II subunit P-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 193/265 (72%), Positives = 224/265 (84%)

Query:     1 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
             MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct:     1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query:    58 LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
             LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct:    59 LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query:   118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
             +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEG
Sbjct:   119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEG 178

Query:   178 GFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGK------------LYICKA 221
             GFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGK            LYICKA
Sbjct:   179 GFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKA 238

Query:   222 QAGDKRWFKGTRKYVESTASSFSVA 246
             QAGDKRWFKG RK+VES A+SFSVA
Sbjct:   239 QAGDKRWFKGARKFVESAATSFSVA 263

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=TAS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA;TAS

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
 Identities = 51/211 (24%), Positives = 83/211 (39%)

Query:    39 AQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYN 98
             + +   Q+  G+   RR AL   +G   + +   PA     E       PK+ + F+   
Sbjct:    44 SSESTYQKGSGNNWKRRQAL---VGVGTLVATSIPATLLLAEEI-----PKSYSPFVDRE 95

Query:    99 GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLS 158
              DG+    PS W   +E +F      ++D +    NV V   PT+K  I + G  EE   
Sbjct:    96 -DGYSYYYPSDW---REFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEE--- 148

Query:   159 KVDYLLGKQAYSGKTSSEGGFD-PDAVATAN---ILEASVRPPYYFLSVLTRTADGDEGG 214
              V Y L K  ++        +D  + V         E  +R P Y  +     A G+   
Sbjct:   149 -VVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNN-- 205

Query:   215 KLYICKAQAGDKRWFKGTRKYVESTASSFSV 245
             + Y     A ++RW K  +K ++  A S  +
Sbjct:   206 RYYTLIVGANERRWRK-VKKQLQVVADSLKI 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      246       246    0.0010  113 3  11 23  0.37    34
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  181 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.66u 0.10s 20.76t   Elapsed:  00:00:01
  Total cpu time:  20.66u 0.10s 20.76t   Elapsed:  00:00:01
  Start:  Sat May 11 08:59:07 2013   End:  Sat May 11 08:59:08 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P11594	PSBP_SINAL	No assigned EC number	0.6716	0.9796	0.9269	N/A	no
P93566	PSBP_SOLTU	No assigned EC number	0.7328	0.9796	0.9269	N/A	no
P12302	PSBP_SPIOL	No assigned EC number	0.7078	1.0	0.9213	N/A	no
P29795	PSBP_SOLLC	No assigned EC number	0.7310	0.9634	0.9186	N/A	no
Q04127	PSBP3_TOBAC	No assigned EC number	0.7078	0.9959	0.9210	N/A	no
Q42029	PSBP1_ARATH	No assigned EC number	0.7283	0.9918	0.9277	yes	no
Q9SLQ8	PSBP_CUCSA	No assigned EC number	0.7765	0.9959	0.9315	N/A	no
O49080	PSBP_FRIAG	No assigned EC number	0.7132	0.9959	0.9280	N/A	no
Q40407	PSBP_NARPS	No assigned EC number	0.6349	0.9349	0.8679	N/A	no
P16059	PSBP_PEA	No assigned EC number	0.7404	0.9878	0.9382	N/A	no
Q00434	PSBP_WHEAT	No assigned EC number	0.625	0.9756	0.9302	N/A	no
Q96334	PSBP_BRAJU	No assigned EC number	0.7281	0.8170	0.9262	N/A	no
Q7DM39	PSBP1_TOBAC	No assigned EC number	0.7425	1.0	0.9179	N/A	no
P18212	PSBP2_TOBAC	No assigned EC number	0.7218	0.9959	0.9245	N/A	no
P85189	PSBP_HELAN	No assigned EC number	0.6716	0.9796	0.9163	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	1e-151
pfam01789	163	pfam01789, PsbP, PsbP	8e-49

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score =  420 bits (1082), Expect = e-151
 Identities = 191/265 (72%), Positives = 213/265 (80%), Gaps = 24/265 (9%)

Query: 1   MASTQCFLHHHALSTTPARTSS---SQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MAST CFLH  AL +  A  SS   S R VS  +P+Q+VCRAQ     E+D SAVSRR A
Sbjct: 1   MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQ-----EEDNSAVSRRAA 55

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           L +L GAAA G+KVSPA+AAYGESANVFGKPKTNT FLPYNGDGFKL +PSKWNPSKERE
Sbjct: 56  LALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKERE 115

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           FPGQVLR+EDNFD+ SN+SV++TPTDKKSITDYGSPEEFLSKV YLLGKQAYSG+T+SEG
Sbjct: 116 FPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEG 175

Query: 178 GFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGK------------LYICKA 221
           GFD +AVATA +LE+S +     PYY+LSVLTRTADGDEGGK            LYICKA
Sbjct: 176 GFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICKA 235

Query: 222 QAGDKRWFKGTRKYVESTASSFSVA 246
           QAGDKRWFKG RK+VE  ASSFSVA
Sbjct: 236 QAGDKRWFKGARKFVEGAASSFSVA 260

Length = 260

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  157 bits (400), Expect = 8e-49
 Identities = 66/179 (36%), Positives = 84/179 (46%), Gaps = 33/179 (18%)

Query: 85  FGKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPT 142
             K KTN  F  Y    DG++   P+ W   +E    G  + + D  +S+ NVSV+I+P 
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGW--WREVVSDGPDVVFHDLIESDENVSVVISPV 58

Query: 143 DKK-SITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----P 197
           DKK S+ D GSPEE         G++   G  + EG         A +LEAS R      
Sbjct: 59  DKKKSLEDLGSPEEV--------GERLLRGVLAPEGSG-----REAELLEASEREVDGKT 105

Query: 198 YYFLSVLTRTADGD----------EGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 246
           YY L  L R ADG           + GKLY   AQ  +KRWFK  +K  E    SFSVA
Sbjct: 106 YYDLEYLVRLADGGDRHELATVTVDRGKLYTLAAQTNEKRWFK-VKKLFERVVDSFSVA 163

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.93
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	96.14
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	91.62

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3.2e-75  Score=519.43  Aligned_cols=241  Identities=77%  Similarity=1.203  Sum_probs=224.5

Q ss_pred             CcchhhhhhccccCCCccccc---ccccccCCCCCceeeecccccccccccCccchhHHHHHHHHHHHhhhcCCCcchhc
Q 025928            1 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAA   77 (246)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~c~a~~~~~~~~~~~~~~RR~~L~~~a~~aa~~~~~~pa~aa   77 (246)
                      ||||+||||||+++++....+   ++++.+..+++++++|++|++.     .+.++||.+|++++|++++++.+.|++||
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~srr~~l~~~~ga~a~~~~~~pa~aa   75 (260)
T PLN00042          1 MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQEED-----NSAVSRRAALALLAGAAAAGAKVSPANAA   75 (260)
T ss_pred             CcchhhhhhcccccchhhhcccccccccccCCCCCcceeeeccccc-----cccccHHHHHHHHHHHHHhhcccCchhhh
Confidence            999999999999954433211   3578899999999999999773     34689999999999988899999999999


Q ss_pred             ccccccccCCCCCCCCceecCCCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEecCCCCCccccCChHHHH
Q 025928           78 YGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFL  157 (246)
Q Consensus        78 ~~e~a~vfg~pk~~~~f~~y~~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~~~~sI~dlGsPeef~  157 (246)
                      |||+|||||+||++++|++|++|||+|+||++|+++++.+++|+|++|+|+++.++||+|+|+|+++++|+|||+|||||
T Consensus        76 y~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l  155 (260)
T PLN00042         76 YGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFL  155 (260)
T ss_pred             hcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecCCCc------------cCCeEEEEEe
Q 025928          158 SKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGD------------EGGKLYICKA  221 (246)
Q Consensus       158 ~~v~~~L~~~~~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~~~------------~~GrLYtl~a  221 (246)
                      ++|+++|++|++.++|.+|+||+||++++++||++++|    ++||+|||.+++++++            .|||||||++
T Consensus       156 ~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLYtl~a  235 (260)
T PLN00042        156 SKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICKA  235 (260)
T ss_pred             HHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEEEEEe
Confidence            99999999999999999999999999999999999998    9999999999999753            4899999999


Q ss_pred             eeCCccccchhhHhHHHhhcccccC
Q 025928          222 QAGDKRWFKGTRKYVESTASSFSVA  246 (246)
Q Consensus       222 qa~e~rW~k~~~~~l~~v~~SF~V~  246 (246)
                      |+||+||+|+.+++|++|++||+||
T Consensus       236 qa~EkRW~K~~~k~l~~v~~SFsVa  260 (260)
T PLN00042        236 QAGDKRWFKGARKFVEGAASSFSVA  260 (260)
T ss_pred             cCchhhhhHHHHHHHHHHHhceecC
Confidence            9999999998776799999999997

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=6.6e-42  Score=305.36  Aligned_cols=192  Identities=23%  Similarity=0.322  Sum_probs=150.4

Q ss_pred             cCCCCCceeeecccccccccccCccchhHHHHHHHHHHHhhhcCCCcchhcccccccccCCCCCCCCceecCCCceEEec
Q 025928           27 VSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSI  106 (246)
Q Consensus        27 ~~~~~~~~~~c~a~~~~~~~~~~~~~~RR~~L~~~a~~aa~~~~~~pa~aa~~e~a~vfg~pk~~~~f~~y~~dgYsf~y  106 (246)
                      ..+-+|-.+.|..+...     ..+++||.+|+..+..+.+.....-...|++       .|+++..|++ +.|||+|+|
T Consensus        57 ~~~~~~~~~~~~~~~~~-----~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a-------~~~~l~~y~D-~~DGY~FlY  123 (286)
T PLN00059         57 AKPDSPVAINCLTDAKQ-----VCAVGRRKSMMMGLLMSGLIVSEANLPTAFA-------SIPVFREYID-TFDGYSFKY  123 (286)
T ss_pred             cCCCCCeeeecccchhh-----hhhhhhhhhhHHHHHHHHHHHHhhcCchhhc-------CCcccceeEc-CCCCeEEeC
Confidence            34455566788888331     3489999997643322322222111112333       3556777777 789999999


Q ss_pred             CCCCCcCCccCCCCceEEeecCCCCCCceEEEEecC---CCCCccccCChHHHHHHHHHHHHhhhhcCC--CCCCCCCCC
Q 025928          107 PSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPT---DKKSITDYGSPEEFLSKVDYLLGKQAYSGK--TSSEGGFDP  181 (246)
Q Consensus       107 P~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~---~~~sI~dlGsPeef~~~v~~~L~~~~~~~~--~~~~~g~~~  181 (246)
                      |.+|++++.   .|+|++|+|+++.+|||+|+|+|+   ++++|+|||+|+|    ||++|++++++++  +..++|+  
T Consensus       124 P~GWi~V~~---~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~e----VgerLlkqvLa~f~str~GsgR--  194 (286)
T PLN00059        124 PQNWIQVRG---AGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEE----VGKRVLRQYLTEFMSTRLGVKR--  194 (286)
T ss_pred             CCCCeEecc---CCCceEEeccCccccceEEEEecCCcccCCChHHcCCHHH----HHHHHHHHHhcccccccCCCCc--
Confidence            999988873   499999999999999999999988   4899999999999    9999999999975  2233343  


Q ss_pred             ccccceeeeecccC-----CceEEEEEEeecCC---------C-----------------ccCCeEEEEEeeeCCccccc
Q 025928          182 DAVATANILEASVR-----PPYYFLSVLTRTAD---------G-----------------DEGGKLYICKAQAGDKRWFK  230 (246)
Q Consensus       182 ~~v~~a~ll~a~~r-----~~YY~~Ey~~~~~~---------~-----------------~~~GrLYtl~aqa~e~rW~k  230 (246)
                          +++||++.+|     ++||+|||.++++.         +                 .+|||||||++|+||+||.|
T Consensus       195 ----eaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~k  270 (286)
T PLN00059        195 ----EANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLE  270 (286)
T ss_pred             ----ceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHH
Confidence                8999999987     99999999999961         1                 25999999999999999999


Q ss_pred             hhhHhHHHhhccccc
Q 025928          231 GTRKYVESTASSFSV  245 (246)
Q Consensus       231 ~~~~~l~~v~~SF~V  245 (246)
                      +++. |++|++||+|
T Consensus       271 vk~~-f~~V~dSF~V  284 (286)
T PLN00059        271 EEKD-LRRVMDSFRV  284 (286)
T ss_pred             HHHH-HHHHHhheee
Confidence            9886 9999999998

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=3.4e-38  Score=281.35  Aligned_cols=176  Identities=23%  Similarity=0.373  Sum_probs=132.6

Q ss_pred             cchhHHHHHHHHHHHhh-hcCCCcchhcccccccccCCC-CCCCCceecC-------------CCceEEecCCCCCcCCc
Q 025928           51 AVSRRLALTVLIGAAAV-GSKVSPADAAYGESANVFGKP-KTNTDFLPYN-------------GDGFKLSIPSKWNPSKE  115 (246)
Q Consensus        51 ~~~RR~~L~~~a~~aa~-~~~~~pa~aa~~e~a~vfg~p-k~~~~f~~y~-------------~dgYsf~yP~~W~~~~~  115 (246)
                      ...||++|.+++++..+ .....|+.|..-|. +.+-.| ....+|..|.             ..||+|+||.+|+++++
T Consensus        42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~V  120 (263)
T PLN00067         42 VIHRRELLLGLALAPLILIAPEPPAEAREVEV-GSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRV  120 (263)
T ss_pred             hhHHHHHHhhhhhhhhhhccCCchhhhheehh-hcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccc
Confidence            57899999887765433 22233444333332 222222 1234565554             47999999999999998


Q ss_pred             cC------------CCCceEEeecCCCCCCceEEEEecC------CCCCccccCChHHHHHHHHHHHHhhhhcCCCCCCC
Q 025928          116 RE------------FPGQVLRYEDNFDSNSNVSVIITPT------DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG  177 (246)
Q Consensus       116 ~~------------~~G~d~~f~D~~~~~~nVsV~Vsp~------~~~sI~dlGsPeef~~~v~~~L~~~~~~~~~~~~~  177 (246)
                      .+            ++|+|++|+|++  ++||+|+|+|+      ++++|+|||+||+|    ++.|++.+.+     ++
T Consensus       121 s~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeV----l~~Lg~~v~g-----~~  189 (263)
T PLN00067        121 ANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKL----IASLGPFVTG-----NS  189 (263)
T ss_pred             cccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHH----HHHhhHHhhc-----CC
Confidence            74            456999999965  68999999998      56899999999995    5555554444     22


Q ss_pred             CCCCccccceeeeecccC----CceEEEEEEeecCCCc---------cCCeEEEEEeeeCCccccchhhHhHHHhhcccc
Q 025928          178 GFDPDAVATANILEASVR----PPYYFLSVLTRTADGD---------EGGKLYICKAQAGDKRWFKGTRKYVESTASSFS  244 (246)
Q Consensus       178 g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~~~---------~~GrLYtl~aqa~e~rW~k~~~~~l~~v~~SF~  244 (246)
                      ++      .++||+++++    ++||+|||.++.+++.         +|||||||++|++|+||+|+++. |++|++||+
T Consensus       190 ~~------~~eLLeAs~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~-l~~V~dSFs  262 (263)
T PLN00067        190 YD------PDELLETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKT-LKAILDSFQ  262 (263)
T ss_pred             CC------CcceEEeeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHH-HHHHHHhcc
Confidence            32      5589999998    9999999999988653         59999999999999999998875 999999998


Q ss_pred             c
Q 025928          245 V  245 (246)
Q Consensus       245 V  245 (246)
                      |
T Consensus       263 V  263 (263)
T PLN00067        263 A  263 (263)
T ss_pred             C
Confidence            7

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=3.4e-35  Score=249.79  Aligned_cols=143  Identities=34%  Similarity=0.584  Sum_probs=118.5

Q ss_pred             CCCCCCCceec--CCCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEecCCCC-CccccCChHHHHHHHHHH
Q 025928           87 KPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK-SITDYGSPEEFLSKVDYL  163 (246)
Q Consensus        87 ~pk~~~~f~~y--~~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~~~~-sI~dlGsPeef~~~v~~~  163 (246)
                      .++...+|.+|  .++||+|+||++|++++.   .|++++|+|+++.++||+|+|+|+... +|+|||+|++    +++.
T Consensus        16 ~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~---~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~----va~~   88 (175)
T PF01789_consen   16 AAEASTGFQPYTDSDDGYSFLYPSGWEEVDV---SGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEE----VAER   88 (175)
T ss_dssp             STT--SSEEEEEECTTTEEEEEETTEEEEES---TTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHH----HHHH
T ss_pred             cccCCCCceEEEcCCCCEEEECCCCCeecCC---CCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHH----HHHH
Confidence            34456778888  689999999999965544   699999999999999999999999555 9999999999    8888


Q ss_pred             HHhhhhcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecCC-Cc---------cCCeEEEEEeeeCCcccc
Q 025928          164 LGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTAD-GD---------EGGKLYICKAQAGDKRWF  229 (246)
Q Consensus       164 L~~~~~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~-~~---------~~GrLYtl~aqa~e~rW~  229 (246)
                      |.+..+..+   +++      +.++||++.++    ++||+|||.++.++ +.         .|||||+|++|++|+||+
T Consensus        89 l~~~~~~~~---~~~------~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l~~~a~e~~w~  159 (175)
T PF01789_consen   89 LLNGELASP---GSG------REAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTLTAQAPESRWD  159 (175)
T ss_dssp             HHHHCCCHC---TSS------EEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEHHHHH
T ss_pred             Hhhhhcccc---cCC------cceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEEEEEcCHHHHH
Confidence            888766644   323      38899999998    89999999999887 32         599999999999999999


Q ss_pred             chhhHhHHHhhcccccC
Q 025928          230 KGTRKYVESTASSFSVA  246 (246)
Q Consensus       230 k~~~~~l~~v~~SF~V~  246 (246)
                      |++++ |++|++||+|+
T Consensus       160 k~~~~-l~~iv~SF~v~  175 (175)
T PF01789_consen  160 KVEPK-LRKIVDSFRVY  175 (175)
T ss_dssp             TCHHH-HHHHHHC-EE-
T ss_pred             HHHHH-HHHHHhcEEeC
Confidence            99886 99999999985

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=2.8e-34  Score=257.95  Aligned_cols=177  Identities=24%  Similarity=0.380  Sum_probs=136.1

Q ss_pred             CccchhHHHHHHHHHHHhh--hcCCCcchhc-cccccc-ccC--CCCCCCCceecCC---------------CceEEecC
Q 025928           49 GSAVSRRLALTVLIGAAAV--GSKVSPADAA-YGESAN-VFG--KPKTNTDFLPYNG---------------DGFKLSIP  107 (246)
Q Consensus        49 ~~~~~RR~~L~~~a~~aa~--~~~~~pa~aa-~~e~a~-vfg--~pk~~~~f~~y~~---------------dgYsf~yP  107 (246)
                      ...++||.+|+.++.++.+  .+.+.++.|+ +|..|+ |+|  .|. ..+|+.|..               .+|+|+||
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~-~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP  120 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPD-ENGWRTYRRPEGKSGGHGVGWSEITPYSFKVP  120 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCcc-ccceEEEecCccccCcCCCCccccCCeEEECC
Confidence            4578999999866554333  2334444445 787765 666  443 478888872               57999999


Q ss_pred             CCCCcCCccC----CCCceEEeecCCCCCCceEEEEecC--------CCCCccccCChHHHHHHHHHHHHhhhhcCCCCC
Q 025928          108 SKWNPSKERE----FPGQVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS  175 (246)
Q Consensus       108 ~~W~~~~~~~----~~G~d~~f~D~~~~~~nVsV~Vsp~--------~~~sI~dlGsPeef~~~v~~~L~~~~~~~~~~~  175 (246)
                      .+|.++++.+    -+|+|++|.|  +.++||+|+|+|+        ++++|+|||+||+    |++.|+++++..+   
T Consensus       121 ~GW~ev~VS~~d~gg~~vd~Rf~~--~~~~nvsVvVspv~rla~~~~~~~sI~dLGspee----Vi~~l~~~v~g~~---  191 (262)
T PLN00066        121 QGWEEVPVSIADLGGTEIDLRFAS--DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEK----VISGFGPELIGEP---  191 (262)
T ss_pred             CCCeEeecccccCCCCceEEEecc--CCCccEEEEEeccccccccccCCCChHHcCCHHH----HHHHHHHHhcCCC---
Confidence            9999888763    2456777776  5789999999998        6889999999999    6777777666532   


Q ss_pred             CCCCCCccccceeeeecccC----CceEEEEEEeecCC---CccCCeEEEEEeeeCCccccchhhHhHHHhhccccc
Q 025928          176 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTAD---GDEGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV  245 (246)
Q Consensus       176 ~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~---~~~~GrLYtl~aqa~e~rW~k~~~~~l~~v~~SF~V  245 (246)
                        .      +.++||+++++    ++||+||| .++..   ...|||||||++|+||+||+|++++ |++|++||+|
T Consensus       192 --~------~e~eLl~a~~re~dGktYY~~E~-~rH~LasaTV~~GrLYt~~asape~rW~k~~~~-lr~v~dSF~V  258 (262)
T PLN00066        192 --V------EEGKVLSMEVAEHSGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKD-LKRIAKSFRV  258 (262)
T ss_pred             --c------cccceeEeeeeecCCcEEEEEEE-eCceEEEEEEECCEEEEEEeecchHhhHHHHHH-HHHHhhceee
Confidence              1      26789999887    99999999 22221   2379999999999999999999886 9999999997

>PLN03152 hypothetical protein; Provisional

Probab=99.93  E-value=3.2e-26  Score=200.26  Aligned_cols=176  Identities=25%  Similarity=0.399  Sum_probs=121.5

Q ss_pred             cchhHHHHHHHHHHHh-hhcCCCcchhccccccc----ccCCCCCCCCceecCCCceEEecCCCCCcCCccC-C------
Q 025928           51 AVSRRLALTVLIGAAA-VGSKVSPADAAYGESAN----VFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE-F------  118 (246)
Q Consensus        51 ~~~RR~~L~~~a~~aa-~~~~~~pa~aa~~e~a~----vfg~pk~~~~f~~y~~dgYsf~yP~~W~~~~~~~-~------  118 (246)
                      ..+||+.++-.+.+.+ ....-.|..-++++..+    +.+.-.+.+.|..|.++||++.||.++...-|.+ +      
T Consensus        30 ~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f~di~e~~~~~~g~~~  109 (241)
T PLN03152         30 GASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLSL  109 (241)
T ss_pred             cccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCChhhhcChhhcccccce
Confidence            3557777654332222 12223444444555432    3333345778999999999999999998776543 1      


Q ss_pred             CC-------ceEEeecCCCCCCceEEEEecC--------CCCCccccCChHHHHHHHHHHHHhhhhcCCCCCCCCCC-Cc
Q 025928          119 PG-------QVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD-PD  182 (246)
Q Consensus       119 ~G-------~d~~f~D~~~~~~nVsV~Vsp~--------~~~sI~dlGsPeef~~~v~~~L~~~~~~~~~~~~~g~~-~~  182 (246)
                      .|       -..||..+ |.+|||||+|+|+        +.++|+|||+|+|    ||+.|.     +.    ++.. .+
T Consensus       110 yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~E----Vgkv~v-----P~----g~~~~sa  175 (241)
T PLN03152        110 YGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKE----AAKIFV-----PG----GATLYSA  175 (241)
T ss_pred             ecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHH----HHHhhC-----CC----ccccccc
Confidence            12       24577754 7899999999997        7899999999999    897664     22    1100 11


Q ss_pred             cccceeeeecccC--CceEEEEEEeecCC-----CccCCeEEEEEeeeCCccccchhhHhHHHhhccccc
Q 025928          183 AVATANILEASVR--PPYYFLSVLTRTAD-----GDEGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV  245 (246)
Q Consensus       183 ~v~~a~ll~a~~r--~~YY~~Ey~~~~~~-----~~~~GrLYtl~aqa~e~rW~k~~~~~l~~v~~SF~V  245 (246)
                        +.+++-+  +.  ++||+|||.++.-+     ...+||||||+++++|+||+|++++ |+++++||+|
T Consensus       176 --R~iel~~--E~dGKtYY~lEy~v~~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~k-fr~aa~SFsV  240 (241)
T PLN03152        176 --RTIKVKE--EEGIRTYYFYEFGRDEQHVALVATVNSGKAYIAGATAPESKWDDDGVK-LRSAAISLTV  240 (241)
T ss_pred             --ceeeeee--ecCCceeEEEEEEeCCcEEEEEEEEcCCeEEEEecCCchhchHHHHHH-HHHHHhheee
Confidence              1334411  22  99999999987222     1369999999999999999999998 9999999997

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=96.14  E-value=0.024  Score=45.46  Aligned_cols=30  Identities=17%  Similarity=0.078  Sum_probs=25.9

Q ss_pred             CCeEEEEEeeeCCccccchhhHhHHHhhccc
Q 025928          213 GGKLYICKAQAGDKRWFKGTRKYVESTASSF  243 (246)
Q Consensus       213 ~GrLYtl~aqa~e~rW~k~~~~~l~~v~~SF  243 (246)
                      ++++|+|+.+++....+.... .++.+++||
T Consensus       101 ~~~~l~~T~t~~~~~~~~~~~-~~~~i~~Sf  130 (130)
T PF08786_consen  101 GRRVLVFTYTAPGPFTEEQRA-HWEAILKSF  130 (130)
T ss_dssp             -CCEEEEEEEEECCCHHHHHH-HHHHHHCT-
T ss_pred             CCEEEEEEEEcCCCCCHHHHH-HHHHHHhcC
Confidence            589999999999999999776 599999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=91.62  E-value=1.1  Score=41.43  Aligned_cols=113  Identities=19%  Similarity=0.293  Sum_probs=54.8

Q ss_pred             CCceEEecCCCCCcCCccCC-CCceEEeecCCCC---------CCceEEEEecCCCCCccccCChHHHHHHHHHHHHhh-
Q 025928           99 GDGFKLSIPSKWNPSKEREF-PGQVLRYEDNFDS---------NSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQ-  167 (246)
Q Consensus        99 ~dgYsf~yP~~W~~~~~~~~-~G~d~~f~D~~~~---------~~nVsV~Vsp~~~~sI~dlGsPeef~~~v~~~L~~~-  167 (246)
                      .-||+|.+|.+|..+....+ .|+.+.-+-..+.         .+.-+|++..+|.|   =|-+.|.=-.+.+.+|+.. 
T Consensus       116 ~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~k---l~a~ae~dn~kaa~rl~sdm  192 (297)
T PF07174_consen  116 AGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLK---LFASAEPDNTKAAVRLASDM  192 (297)
T ss_pred             ccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEecccccc---ccccccCChHHHHHHHhccc
Confidence            56999999999976654433 5666655422111         12334555554332   2322222112345555432 


Q ss_pred             --hhcCCCCCCCCCCCccccceeeeecccC---CceEEEEEEeecCCCccCCeEEEEEeee
Q 025928          168 --AYSGKTSSEGGFDPDAVATANILEASVR---PPYYFLSVLTRTADGDEGGKLYICKAQA  223 (246)
Q Consensus       168 --~~~~~~~~~~g~~~~~v~~a~ll~a~~r---~~YY~~Ey~~~~~~~~~~GrLYtl~aqa  223 (246)
                        +|-+.   . |.+-|+  +..-|++.--   ..||...|.  -. ...||++|+-.+..
T Consensus       193 geffmp~---p-g~rinq--~~~~l~~~g~~g~asyyevkf~--d~-~kp~gqiw~~vvg~  244 (297)
T PF07174_consen  193 GEFFMPY---P-GTRINQ--ETTPLDANGMPGSASYYEVKFT--DA-NKPNGQIWAGVVGS  244 (297)
T ss_pred             cceeccC---C-Cccccc--cccccccCCcccceeEEEEEec--cC-CCCCCceEEEeecC
Confidence              12222   2 223444  2234554433   667744332  11 12477777777665

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
2vu4_A	190	Structure Of Psbp Protein From Spinacia Oleracea At		5e-75
1v2b_A	177	Crystal Structure Of Psbp Protein In The Oxygen-Evo		9e-70

>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A Resolution Length = 190

Iteration: 1
 Score =  277 bits (708), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 153/186 (82%), Gaps = 16/186 (8%)
Query: 77  AYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVS 136
           AYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+S
Sbjct: 5   AYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLS 64
Query: 137 VIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV-- 194
           V++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SEGGFD   VA+AN+LE+S   
Sbjct: 65  VLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPV 124
Query: 195 --RPPYYFLSVLTRTADGDEG------------GKLYICKAQAGDKRWFKGTRKYVESTA 240
                YY ++VLTRTADGDEG            GKLYICKAQAGDKRWFKG +K+VES  
Sbjct: 125 VDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESAT 184
Query: 241 SSFSVA 246
           SSFSVA
Sbjct: 185 SSFSVA 190

>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving Complex Of Photosystem Ii From Higher Plants Length = 177

Iteration: 1
 Score =  259 bits (662), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 126/177 (71%), Positives = 145/177 (81%), Gaps = 16/177 (9%)
Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60
Query: 146 SITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFL 201
           SITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+L
Sbjct: 61  SITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYL 120
Query: 202 SVLTRTADGDEG------------GKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 246
           S+LTRTADG+EG            GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 121 SILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	7e-81
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	1e-56
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	3e-21
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	3e-20

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  177 bits (450), Expect = 1e-56
 Identities = 126/177 (71%), Positives = 145/177 (81%), Gaps = 16/177 (9%)

Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60

Query: 146 SITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFL 201
           SITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+L
Sbjct: 61  SITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYL 120

Query: 202 SVLTRTADGDEG------------GKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 246
           S+LTRTADG+EG            GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 121 SILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 86.5 bits (213), Expect = 3e-21
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 37/175 (21%)

Query: 92  TDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITP-TDKKSIT 148
           +    Y  + DG++   P  W   +  +       + D  ++  NVSV++      KS+ 
Sbjct: 6   SGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDV--VFHDIIETTENVSVVVNTVASTKSLE 63

Query: 149 DYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFLS-V 203
           + GSPEE   ++   +   + SG+             ++ ++ A+ +      YY L   
Sbjct: 64  ELGSPEEVGDRLLRNIIAPSESGR-------------SSALIAATSQKADDKTYYILEYA 110

Query: 204 LTRTADGDE-------------GGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 245
           +T   DG+               GK+Y     A ++RW K      ++  SSF+V
Sbjct: 111 VTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKV-EDQFKTIVSSFTV 164

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 83.8 bits (206), Expect = 3e-20
 Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 30/164 (18%)

Query: 98  NGDGFKLSIPSKW-NPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD-KKSITDYGSPEE 155
             DG++   P+ W     +   PG  + + D  + + N+SVII+     K++TD G+  +
Sbjct: 20  TKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD 79

Query: 156 FLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGD 211
               V Y   K                    A ++ A  R      YY L       D  
Sbjct: 80  ----VGYRFMKTVND---------ASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNV 126

Query: 212 ----------EGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 245
                       GKL        + RW    +   ++ ASSF V
Sbjct: 127 ERHDLASVTTNRGKLITFDLSTAEDRW-DTVKSLFDTVASSFHV 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.98
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.95
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	97.08
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	84.41

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=2.2e-45  Score=313.16  Aligned_cols=160  Identities=77%  Similarity=1.244  Sum_probs=127.6

Q ss_pred             CCCCCCCCceecCCCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEecCCCCCccccCChHHHHHHHHHHHH
Q 025928           86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLG  165 (246)
Q Consensus        86 g~pk~~~~f~~y~~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~~~~sI~dlGsPeef~~~v~~~L~  165 (246)
                      |+||..++|.+|.+|||+|+||++|+++++.+++|++++|+|+++.++||+|+|+|+++++|+|||+|++||++|+++|+
T Consensus         1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~   80 (177)
T 1v2b_A            1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG   80 (177)
T ss_dssp             ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCCCCCCCceEEecCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecCCC---c---------cCCeEEEEEeeeCCcccc
Q 025928          166 KQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADG---D---------EGGKLYICKAQAGDKRWF  229 (246)
Q Consensus       166 ~~~~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~~---~---------~~GrLYtl~aqa~e~rW~  229 (246)
                      ++++.+++.+++||+|+.+++++||+++++    ++||+|||.++++++   .         +|||||||++|++|+||+
T Consensus        81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~  160 (177)
T 1v2b_A           81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF  160 (177)
T ss_dssp             -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCS
T ss_pred             HHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhh
Confidence            999999899999999999999999999998    999999999998873   2         599999999999999999


Q ss_pred             ch-hhHhHHHhhcccccC
Q 025928          230 KG-TRKYVESTASSFSVA  246 (246)
Q Consensus       230 k~-~~~~l~~v~~SF~V~  246 (246)
                      ++ ++. |++|++||+||
T Consensus       161 k~~~~~-l~~v~~SF~v~  177 (177)
T 1v2b_A          161 KGAKKF-VENTATSFSLA  177 (177)
T ss_dssp             TTTTHH-HHHHHHTCEEC
T ss_pred             hhHHHH-HHHHHhheecC
Confidence            96 775 99999999997

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.98  E-value=2e-32  Score=228.74  Aligned_cols=138  Identities=26%  Similarity=0.475  Sum_probs=119.2

Q ss_pred             CCceecC--CCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEecCC-CCCccccCChHHHHHHHHHHHHhhh
Q 025928           92 TDFLPYN--GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD-KKSITDYGSPEEFLSKVDYLLGKQA  168 (246)
Q Consensus        92 ~~f~~y~--~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~~-~~sI~dlGsPeef~~~v~~~L~~~~  168 (246)
                      .+|..|.  ++||+|+||++|+++...+  |++++|+|+++..+||+|+|+|+. .++|+|||+||+    +++.|++++
T Consensus         6 ~g~~~~~D~~~gysf~~P~~W~~~~~~~--g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~----va~~l~~~~   79 (165)
T 2xb3_A            6 SGLQAYVDSYDGYEFLYPRGWVQVQVED--PVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEE----VGDRLLRNI   79 (165)
T ss_dssp             CCEEEEEETTTTEEEEEETTEEEECCCT--TEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHH----HHHHHHHHT
T ss_pred             CCceEEEcCCCCEEEEcCCCCeEecCCC--CceEEEECcccCCceEEEEEecCCCCCChHHcCCHHH----HHHHHHHHh
Confidence            4566666  8999999999997655332  899999999999999999999995 599999999999    899999988


Q ss_pred             hcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecCC-----Cc---------cCCeEEEEEeeeCCccccc
Q 025928          169 YSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTAD-----GD---------EGGKLYICKAQAGDKRWFK  230 (246)
Q Consensus       169 ~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~-----~~---------~~GrLYtl~aqa~e~rW~k  230 (246)
                      ++++   +++      +.++|+++.++    ++||+|||.+++++     +.         ++||||+|++|++|++|++
T Consensus        80 ~~~~---~~~------~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~  150 (165)
T 2xb3_A           80 IAPS---ESG------RSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPK  150 (165)
T ss_dssp             TSCT---TSS------CEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHH
T ss_pred             hcCC---CCC------cceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHH
Confidence            8744   223      38899999997    89999999998887     32         4999999999999999999


Q ss_pred             hhhHhHHHhhccccc
Q 025928          231 GTRKYVESTASSFSV  245 (246)
Q Consensus       231 ~~~~~l~~v~~SF~V  245 (246)
                      +++. |++|++||+|
T Consensus       151 ~~~~-l~~v~~SF~v  164 (165)
T 2xb3_A          151 VEDQ-FKTIVSSFTV  164 (165)
T ss_dssp             HHHH-HHHHHHTCEE
T ss_pred             HHHH-HHHHHhhEEe
Confidence            9886 9999999997

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.95  E-value=3e-33  Score=235.79  Aligned_cols=140  Identities=26%  Similarity=0.449  Sum_probs=120.6

Q ss_pred             CCceecC--CCceEEecCCCCCcCCccC-CCCceEEeecCCCCCCceEEEEecCCC-CCccccCChHHHHHHHHHHHHhh
Q 025928           92 TDFLPYN--GDGFKLSIPSKWNPSKERE-FPGQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVDYLLGKQ  167 (246)
Q Consensus        92 ~~f~~y~--~dgYsf~yP~~W~~~~~~~-~~G~d~~f~D~~~~~~nVsV~Vsp~~~-~sI~dlGsPeef~~~v~~~L~~~  167 (246)
                      .+|..|.  .|||+|+||++|+++.... -.|++++|+|+++.++||+|+|+|+.+ ++|+|||+||+    |++.|+++
T Consensus        12 ~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~----va~~l~~~   87 (170)
T 2lnj_A           12 ASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD----VGYRFMKT   87 (170)
Confidence            4566666  7899999999997654321 139999999999999999999999966 99999999999    99999999


Q ss_pred             hhcCCCCCCCCCCCccccceeeeecccC----CceEEEEEEeecC-CC---------ccCCeEEEEEeeeCCccccchhh
Q 025928          168 AYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTA-DG---------DEGGKLYICKAQAGDKRWFKGTR  233 (246)
Q Consensus       168 ~~~~~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~-~~---------~~~GrLYtl~aqa~e~rW~k~~~  233 (246)
                      +++++   +      ..+.++||++.++    ++||+|||.++++ .+         .++||||+|++|++|++|+++++
T Consensus        88 ~~~~~---~------~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~  158 (170)
T 2lnj_A           88 VNDAS---Q------GDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKS  158 (170)
Confidence            88754   3      3348899999998    8999999999887 32         25999999999999999999988


Q ss_pred             HhHHHhhccccc
Q 025928          234 KYVESTASSFSV  245 (246)
Q Consensus       234 ~~l~~v~~SF~V  245 (246)
                      + |++|++||+|
T Consensus       159 ~-l~~v~~SF~v  169 (170)
T 2lnj_A          159 L-FDTVASSFHV  169 (170)
Confidence            6 9999999997

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=97.08  E-value=0.0021  Score=52.05  Aligned_cols=32  Identities=3%  Similarity=-0.093  Sum_probs=28.7

Q ss_pred             CeEEEEEeeeCCccccchhhHhHHHhhcccccC
Q 025928          214 GKLYICKAQAGDKRWFKGTRKYVESTASSFSVA  246 (246)
Q Consensus       214 GrLYtl~aqa~e~rW~k~~~~~l~~v~~SF~V~  246 (246)
                      +++|+|+.+++..-|..... .++.|++||+..
T Consensus       111 ~~~l~~t~t~~~~~~~~~~~-~~~~i~~Sf~~~  142 (148)
T 1tu1_A          111 PAVLITTLTTTPADLPHHEP-AWKQAMQTLVPR  142 (148)
T ss_dssp             SSEEEEEEEECGGGHHHHHH-HHHHHHHTCEEC
T ss_pred             CeEEEEEEEcCCCCCHHHHH-HHHHHHHhcccC
Confidence            39999999999999999777 599999999863

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=84.41  E-value=13  Score=30.48  Aligned_cols=120  Identities=14%  Similarity=0.121  Sum_probs=67.9

Q ss_pred             CCceEEecCCCCCcCCccCCCCceEEeecCC---CCCCceEEEEecCCCCCccccCChHHHHHHHHHHHHhhhhcCCCCC
Q 025928           99 GDGFKLSIPSKWNPSKEREFPGQVLRYEDNF---DSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS  175 (246)
Q Consensus        99 ~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~---~~~~nVsV~Vsp~~~~sI~dlGsPeef~~~v~~~L~~~~~~~~~~~  175 (246)
                      .-++++-.|.+|......   |.-+.-.+..   ...-|+-|++......    +  -|+    .-..|.+ .++     
T Consensus        17 ~p~~~v~~P~gWe~~~~~---~~~~~~~~~~~~~~F~pN~vVtv~r~~~~----~--~e~----~r~el~~-~~~-----   77 (161)
T 3lyd_A           17 LTGFTVPIPETWQPDPTM---GTQFAARPHTPPQGFTPNIIGTVRRAATG----A--LHN----QRTELDQ-RAT-----   77 (161)
T ss_dssp             CCEEEEECCTTEEECTTS---SSSEEEEESSCCSSSCCEEEEEEEEECTT----H--HHH----HHHHHHH-HHT-----
T ss_pred             CceeeccCCCCceEcCCC---CceEEeccCCCCCCccccEEEEEEecCcH----H--HHH----HHHHHHH-HHh-----
Confidence            468999999999766332   3323222211   2457888888776322    1  233    3333333 111     


Q ss_pred             CCCCCCccccceeeeecc--cC--CceEEEEEEeecCC------------CccCCeEEEE--EeeeCCccccchhhHhHH
Q 025928          176 EGGFDPDAVATANILEAS--VR--PPYYFLSVLTRTAD------------GDEGGKLYIC--KAQAGDKRWFKGTRKYVE  237 (246)
Q Consensus       176 ~~g~~~~~v~~a~ll~a~--~r--~~YY~~Ey~~~~~~------------~~~~GrLYtl--~aqa~e~rW~k~~~~~l~  237 (246)
                         .-|+-    ++++..  +.  ..-|..||.=..+.            -..+|..|++  ++++.+.+-....+ +++
T Consensus        78 ---~lp~~----~~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~-d~q  149 (161)
T 3lyd_A           78 ---QLPDY----AERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWD-TFR  149 (161)
T ss_dssp             ---TSTTC----EEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHH-HHH
T ss_pred             ---hCCCc----EeecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHH-HHH
Confidence               01221    121111  11  55566666522221            1257777776  99999999888777 599


Q ss_pred             Hhhccccc
Q 025928          238 STASSFSV  245 (246)
Q Consensus       238 ~v~~SF~V  245 (246)
                      .|++||+|
T Consensus       150 ~iv~sl~v  157 (161)
T 3lyd_A          150 LMHADLTV  157 (161)
T ss_dssp             HHHHTCEE
T ss_pred             HHhheeEe
Confidence            99999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	8e-56

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  174 bits (442), Expect = 8e-56
 Identities = 121/171 (70%), Positives = 139/171 (81%), Gaps = 16/171 (9%)

Query: 92  TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYG 151
           TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+G
Sbjct: 1   TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFG 60

Query: 152 SPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRT 207
           SPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+LS+LTRT
Sbjct: 61  SPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRT 120

Query: 208 ADGDEG------------GKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 246
           ADG+EG            GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 121 ADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	97.5

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=6.2e-41  Score=280.81  Aligned_cols=155  Identities=77%  Similarity=1.260  Sum_probs=126.2

Q ss_pred             CCceecCCCceEEecCCCCCcCCccCCCCceEEeecCCCCCCceEEEEecCCCCCccccCChHHHHHHHHHHHHhhhhcC
Q 025928           92 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSG  171 (246)
Q Consensus        92 ~~f~~y~~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~~~nVsV~Vsp~~~~sI~dlGsPeef~~~v~~~L~~~~~~~  171 (246)
                      ++|++|.+|||+|+||++|+++++.+.+|+|++|+|+++..+||+|+|+|+++++|++||+|+++++++++.|+++++.+
T Consensus         1 ~~~~~y~~dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~~   80 (171)
T d1v2ba_           1 TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSG   80 (171)
T ss_dssp             CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-------
T ss_pred             CCcccccCCCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhcc
Confidence            57999999999999999999998888899999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCccccceeeeecccC----CceEEEEEEeecCCCc------------cCCeEEEEEeeeCCccccchhhHh
Q 025928          172 KTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGD------------EGGKLYICKAQAGDKRWFKGTRKY  235 (246)
Q Consensus       172 ~~~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~~~------------~~GrLYtl~aqa~e~rW~k~~~~~  235 (246)
                      +...++|+.++.+++++|++++++    ++||+|||.++++++.            +|||||||++|++|+||+++.++.
T Consensus        81 ~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~~~~~~~  160 (171)
T d1v2ba_          81 KTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKF  160 (171)
T ss_dssp             -----------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHH
T ss_pred             cccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEecCHHHhhhhhHHH
Confidence            888888888888899999999998    8999999999987532            599999999999999999976656


Q ss_pred             HHHhhcccccC
Q 025928          236 VESTASSFSVA  246 (246)
Q Consensus       236 l~~v~~SF~V~  246 (246)
                      |++|++||+|+
T Consensus       161 l~~~v~SF~v~  171 (171)
T d1v2ba_         161 VENTATSFSLA  171 (171)
T ss_dssp             HHHHHHTCEEC
T ss_pred             HHHHHhceEeC
Confidence            99999999996

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=0.00047  Score=53.35  Aligned_cols=122  Identities=9%  Similarity=0.100  Sum_probs=73.3

Q ss_pred             ecCCCceEEecCCCCCcCCccCCCCceEEeecCCCC-CCceEEEEecC-CCCCccccCChHHHHHHHHHHHHhhhhcCCC
Q 025928           96 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDS-NSNVSVIITPT-DKKSITDYGSPEEFLSKVDYLLGKQAYSGKT  173 (246)
Q Consensus        96 ~y~~dgYsf~yP~~W~~~~~~~~~G~d~~f~D~~~~-~~nVsV~Vsp~-~~~sI~dlGsPeef~~~v~~~L~~~~~~~~~  173 (246)
                      .|..+.=+|.+|.+|.   +..  -..+.+.|+... .-||.|...+. +..      ++++++++--..|-++. .   
T Consensus         5 ~Y~~~Egs~~lP~gw~---d~t--~ni~~~~~~~~~~~~~lvIsr~~l~~~~------~l~~~~~~~~~~l~~~l-~---   69 (144)
T d1tu1a_           5 LYRLHEADLEIPDAWQ---DQS--INIFKLPASGPAREASFVISRDASQGDA------PFADYVARQLENAEKQL-P---   69 (144)
T ss_dssp             EEECSSEEEEEETTSE---ECC--BEEEEECCBTTBCCEEEEEEEECCCTTS------CHHHHHHHHHHHHHHHS-T---
T ss_pred             eeEEcCEEEeCCCCce---eCc--ceEEEecCCCCCcceEEEEEeecCCCCC------CHHHHHHHHHHHHHhhC-C---
Confidence            3555555999999994   332  234444544322 23566666665 333      55665555555554432 1   


Q ss_pred             CCCCCCCCccccceeeeecccC----CceEEEEEEeecCCC---------ccCCeEEEEEeeeCCccccchhhHhHHHhh
Q 025928          174 SSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADG---------DEGGKLYICKAQAGDKRWFKGTRKYVESTA  240 (246)
Q Consensus       174 ~~~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~~---------~~~GrLYtl~aqa~e~rW~k~~~~~l~~v~  240 (246)
                          |+        ++++...-    ..-+.+||.-....+         ..++++|+|+.+++...|+...+ .++.++
T Consensus        70 ----~~--------~~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~-~~~~il  136 (144)
T d1tu1a_          70 ----GF--------KLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEP-AWKQAM  136 (144)
T ss_dssp             ----TC--------EEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHH-HHHHHH
T ss_pred             ----Cc--------EEEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHH-HHHHHH
Confidence                22        23332221    455666665554432         14889999999999999999766 599999


Q ss_pred             ccccc
Q 025928          241 SSFSV  245 (246)
Q Consensus       241 ~SF~V  245 (246)
                      +||+.
T Consensus       137 ~Sf~p  141 (144)
T d1tu1a_         137 QTLVP  141 (144)
T ss_dssp             HTCEE
T ss_pred             HhCcc
Confidence            99974