Citrus Sinensis ID: 025936

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVEKHLITFICSFEEYLE
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccHHHHccccHHHHHHHcccccEEEEEcccccEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccccccccccccEEEEEccEEEEEEcccHHHHHHHHHHHHHHcccccccEEEEEEHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHcHHHccccEEEEEcHHHHEEEcccccEEEEcccHHHHHHHHHHHHcccccccccccEEEccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHccHHHHHc
Coil and Loop (DISEMBL)
mefpksqvltnpllslstFIHQNCLRLGSELSSRLDDTKRTLsrrlqrpplsvppfaflsqpKQALAATLSSDFVSKTLAGTAVYtvsnssnefvlisdpngaksiglLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGiafrflpdpAQIRNALELKaadvrtgfdgvpvfQSELLVVKkknkrycpvyfqkeDIEKELSKVsrasrgagvsQHIMVEKHLITFICSFEEYLE
Flexible Loop (DISEMBL)
mefpksqvltnpllsLSTFIHQNCLRLGSELSSRLDDTKRTlsrrlqrpplsvppfAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELrsaakvvpitldqvYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQsellvvkkknkrycpvyfqkediekelskvsrasrgagvsqhimVEKHLITFICSFEEYLE
Low Complexity Region (SEG)
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVEKHLITFICSFEEYLE
Disordered region (IsUnstruct)
*********TNPLLSLSTFIHQNCLRLG****************************AFL*****ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIE************AGVSQHIMVEKHLITFICSFEEY**
Disordered Region (DISOPRED)
****************STFIHQNCLRLG****************************************TLSSDFVSKTLAGTAVYTVSNSSNEFVLIS*PNGAKSIGLLCFRQEDAEAFL***************VVPITLDQVYMLKVEGIAFRFLPDPAQIRN*************DGVPVFQSELLVVKKKNKRYCPVYFQKEDIE*******************MVEKHLITFICSFE****
Disordered Region (DISEMBL)
********LTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSK**********SQHIMVEKHLITFICSFEEYLE
Disordered Region (DISPRO)
********LTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAF********AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVEKHLITFICSFEEYLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVEKHLITFICSFEEYLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q9SZB2	268	Protein TIC 22, chloropla	yes	no	0.898	0.824	0.679	6e-83
Q9ZST9	252	Protein TIC 22, chloropla	N/A	no	0.890	0.869	0.648	5e-80
F4J469	313	Protein TIC 22-like, chlo	no	no	0.764	0.600	0.394	6e-30

>sp|Q9SZB2|TIC22_ARATH Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1

 Score =  306 bits (785), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 184/231 (79%), Gaps = 10/231 (4%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TL-SRRLQRPPLSVPPFAFLS 60
           +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL +RR   P  + PPFA +S
Sbjct: 2   ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query: 61  QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
           Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct: 60  QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query: 120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
           LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct: 120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query: 180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMV
Sbjct: 180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMV 227

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1

 Score =  297 bits (761), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 157/242 (64%), Positives = 183/242 (75%), Gaps = 23/242 (9%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +SQ   NPLLS S FI+ +     + L++RL++TKR     +Q    + P FA       
Sbjct: 2   ESQGQWNPLLSFSRFINHHS----NHLATRLEETKRLAGTLIQSHTRTKPAFA------- 50

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
              ATL+ + V+K+LAGT+VYTVSNS NEFVL+SD  GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 51  ---ATLTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVR 107

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R+KE R  AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALEL+AA+ R  FDGVPVF
Sbjct: 108 SRKKEFRGGAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELRAAN-RGSFDGVPVF 166

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVEKHLITFICSFEEY 244
           QS+LLVVKKKNKRYCPVYF KED+E ELSKVSR+S+G GVSQHIMV         SFE+ 
Sbjct: 167 QSDLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVSQHIMV--------GSFEDV 218

Query: 245 LE 246
           L+
Sbjct: 219 LK 220

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.

Pisum sativum (taxid: 3888)

>sp|F4J469|TI22L_ARATH Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1

 Score =  130 bits (328), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 119/203 (58%), Gaps = 15/203 (7%)

Query: 29  SELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ-----------PKQALAATLSSDFVS 76
           S L+S  D  K+ L  R+ R      P +A +S            P +     LS+D + 
Sbjct: 57  SALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGGGARAQVTVPIRGSGKGLSADAIE 116

Query: 77  KTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR-SAAK 135
           + LAG  VY +SNS+ EFVL+S  +  KS+GLL  ++EDAE  L +++     +R   +K
Sbjct: 117 ERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPRMRKEGSK 176

Query: 136 VVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKAADV-RTGFDGVPVFQSELLVVKK 193
           VV + L +V+ LKV G+AFR +P+  Q++NAL E K A +    F GVPVFQS+ L+++ 
Sbjct: 177 VVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQSKSLILRS 236

Query: 194 KNKRYCPVYFQKEDIEKELSKVS 216
           +N  Y PV+F+KED+EK L + S
Sbjct: 237 ENMSYRPVFFRKEDLEKSLIRAS 259

Involved in protein precursor import into chloroplasts.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224067266	273	predicted protein [Populus trichocarpa]	0.894	0.805	0.801	4e-98
224136756	273	predicted protein [Populus trichocarpa]	0.890	0.802	0.793	3e-96
255538318	272	protein translocase, putative [Ricinus c	0.914	0.827	0.762	5e-95
225458599	277	PREDICTED: protein TIC 22, chloroplastic	0.910	0.808	0.739	2e-93
147834059	293	hypothetical protein VITISV_009266 [Viti	0.918	0.771	0.656	1e-88
449446989	277	PREDICTED: protein TIC 22, chloroplastic	0.930	0.826	0.696	5e-87
356519218	260	PREDICTED: uncharacterized protein LOC10	0.890	0.842	0.725	4e-83
356510391	258	PREDICTED: uncharacterized protein LOC10	0.873	0.833	0.736	3e-81
15234162	268	Tic22-like protein [Arabidopsis thaliana	0.898	0.824	0.679	3e-81
357465499	252	Tic22 [Medicago truncatula] gi|355492082	0.857	0.837	0.676	1e-78

>gi|224067266|ref|XP_002302438.1| predicted protein [Populus trichocarpa] gi|222844164|gb|EEE81711.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (932), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/227 (80%), Positives = 199/227 (87%), Gaps = 7/227 (3%)

Query: 10  TNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSV-----PPFAFLSQPKQ 64
           +NPLLSLSTFIH +CLRLG+E S+R+ DT R L   L  PP  +     PPFA +SQPKQ
Sbjct: 7   SNPLLSLSTFIHHHCLRLGAEFSTRISDTTRFLGGNLP-PPRRLCLAPSPPFASVSQPKQ 65

Query: 65  -ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQV 123
            A  A LSSD V+KTLAGTAVYTVSNS+NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQV
Sbjct: 66  TATTANLSSDHVAKTLAGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQV 125

Query: 124 RLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPV 183
           RLRR+ELRS AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALELKA D+R+GFDGVPV
Sbjct: 126 RLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKAVDIRSGFDGVPV 185

Query: 184 FQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           FQS+LLVVKKKNKRYCP+YFQKEDIEKELSKVS+ASRG  +SQHIMV
Sbjct: 186 FQSDLLVVKKKNKRYCPIYFQKEDIEKELSKVSKASRGPSLSQHIMV 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136756|ref|XP_002326937.1| predicted protein [Populus trichocarpa] gi|222835252|gb|EEE73687.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 181/228 (79%), Positives = 198/228 (86%), Gaps = 9/228 (3%)

Query: 10  TNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLS------VPPFAFLSQPK 63
           +NPLLSLST IHQ+CLRLG+E S+R+ DT R L+     PP S       PPFA +SQPK
Sbjct: 7   SNPLLSLSTVIHQHCLRLGAEFSARVSDTTRFLAGNF--PPPSRLRLAPSPPFASVSQPK 64

Query: 64  Q-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           Q A  A LSS+ V+K LAGTAVYTVSNS NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ
Sbjct: 65  QTANTANLSSEHVAKALAGTAVYTVSNSDNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 124

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VRLRR+ELRS AKVVPITLDQVYMLKVEGIAFRFLPDP QI+NALELK+ADVR+GFDGVP
Sbjct: 125 VRLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKSADVRSGFDGVP 184

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           VFQS+ L+VKKK+KRYCPVYFQKEDIEKELSKVSRASRG G+SQHIMV
Sbjct: 185 VFQSDQLIVKKKSKRYCPVYFQKEDIEKELSKVSRASRGPGLSQHIMV 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538318|ref|XP_002510224.1| protein translocase, putative [Ricinus communis] gi|223550925|gb|EEF52411.1| protein translocase, putative [Ricinus communis]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 180/236 (76%), Positives = 201/236 (85%), Gaps = 11/236 (4%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL-----QRPPLSVPP 55
           ME  K   L+NPLLSLSTFIHQ+CLRLG+ELS+RL DT   +S  L      R     P 
Sbjct: 1   MEHSK---LSNPLLSLSTFIHQHCLRLGAELSTRLGDTTWAVSNNLLPGLNNRKHRPAPL 57

Query: 56  FAFLSQ-PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQE 114
           FA +SQ PKQA  + LSS+ V+KTLAGTAVYTVSNS+NEFVL+SDP+GAKSI LLCFRQE
Sbjct: 58  FASVSQQPKQA--SGLSSEHVAKTLAGTAVYTVSNSNNEFVLVSDPDGAKSISLLCFRQE 115

Query: 115 DAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADV 174
           DAEAFLAQVRLRR+ELRS A++VPITLDQVYMLKVEGIAFRFLPDP QI+NALELKA+D 
Sbjct: 116 DAEAFLAQVRLRRRELRSQARIVPITLDQVYMLKVEGIAFRFLPDPVQIKNALELKASDT 175

Query: 175 RTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           + GFDGVP+FQSELLVVKKKNKRYCP+YFQKEDIEKELSKVSRASRG G+SQHIMV
Sbjct: 176 KRGFDGVPIFQSELLVVKKKNKRYCPIYFQKEDIEKELSKVSRASRGPGLSQHIMV 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458599|ref|XP_002284687.1| PREDICTED: protein TIC 22, chloroplastic-like isoform 1 [Vitis vinifera] gi|359492043|ref|XP_003634356.1| PREDICTED: protein TIC 22, chloroplastic-like isoform 2 [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/242 (73%), Positives = 202/242 (83%), Gaps = 18/242 (7%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR--------TLSRRLQRPPLS 52
           ME PK    +NPLLS STFIHQ+CLRLG+EL+SRLDDT+R         L R L   PLS
Sbjct: 1   MEPPKP---SNPLLSFSTFIHQHCLRLGAELASRLDDTRRLAGNWPPPALRRSL---PLS 54

Query: 53  VPPFAFLSQ----PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGL 108
             PFA +SQ     K+ L   LSSD V+K+LAGTAVYTVSNS+NEFVLISDPNG KSIGL
Sbjct: 55  SLPFASMSQEARGAKRDLGVALSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNGIKSIGL 114

Query: 109 LCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALE 168
           LCFRQEDAEAFLAQV+ R +ELRS A+VVPI+LDQVYMLKVEGIAFRFLPDP QI+NALE
Sbjct: 115 LCFRQEDAEAFLAQVQSRTRELRSQARVVPISLDQVYMLKVEGIAFRFLPDPVQIKNALE 174

Query: 169 LKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHI 228
           LKAAD+++GFDGVPVFQS+LLVVKKKN+RYCP+YFQKEDI KELSKVSR+SRG GV+QHI
Sbjct: 175 LKAADIKSGFDGVPVFQSDLLVVKKKNRRYCPIYFQKEDIVKELSKVSRSSRGPGVTQHI 234

Query: 229 MV 230
           MV
Sbjct: 235 MV 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834059|emb|CAN77199.1| hypothetical protein VITISV_009266 [Vitis vinifera]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/271 (65%), Positives = 202/271 (74%), Gaps = 45/271 (16%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR--------TLSRRLQRPPLS 52
           ME PK    +NPLLS STFIHQ+CLRLG+EL+SRLDDT+R         L R L   PLS
Sbjct: 1   MEPPKP---SNPLLSFSTFIHQHCLRLGAELASRLDDTRRLAGNWPPPALRRSL---PLS 54

Query: 53  VPPFAFLSQ----PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGL 108
             PFA +SQ     K+ L   LSSD V+K+LAGTAVYTVSNS+NEFVLISDPNG KSIGL
Sbjct: 55  SLPFASMSQEARGAKRDLGVALSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNGIKSIGL 114

Query: 109 LCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQV------------------------ 144
           LCFRQEDAEAFLAQV+ R +ELRS A+VVPI+LDQV                        
Sbjct: 115 LCFRQEDAEAFLAQVQSRTRELRSQARVVPISLDQVLLMVRMLVNLAGQFAQAVELFRKL 174

Query: 145 ---YMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPV 201
              YMLKVEGIAFRFLPDP QI+NALELKAAD+++GFDGVPVFQS+LLVVKKKN+RYCP+
Sbjct: 175 AHVYMLKVEGIAFRFLPDPVQIKNALELKAADIKSGFDGVPVFQSDLLVVKKKNRRYCPI 234

Query: 202 YFQKEDIEKELSKVSRASRGAGVSQHIMVEK 232
           YFQKEDI KELSKVSR+SRG GV+QHIM  +
Sbjct: 235 YFQKEDIVKELSKVSRSSRGPGVTQHIMTSE 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446989|ref|XP_004141252.1| PREDICTED: protein TIC 22, chloroplastic-like [Cucumis sativus]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 165/237 (69%), Positives = 193/237 (81%), Gaps = 8/237 (3%)

Query: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLSRRL----QRPPLSV 53
           ME PK    +NPL+S+S+FIH +C +LG+ELS+RL+DTKR   TL+RR            
Sbjct: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60

Query: 54  PPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 113
           P FA L++   ALAATLS D V+K+L GTAVYTVSNS+NEFVLISDPNGAKSIGLLCFR+
Sbjct: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120

Query: 114 EDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAAD 173
           EDAE FLAQVR R++ELRS AKVVPITLDQVY+LKVEGIAFRFLPDP Q++NALELKA++
Sbjct: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALELKASE 180

Query: 174 VRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
             + FDGVPVFQS+LL+VKKKNKRYCP+YF KEDIEKEL KV +A R  G SQHIMV
Sbjct: 181 TGSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELLKVPKARR-FGTSQHIMV 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519218|ref|XP_003528270.1| PREDICTED: uncharacterized protein LOC100802286 [Glycine max]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 187/226 (82%), Gaps = 7/226 (3%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +S+  +NPLLS S+FIHQ+C+RLGS+L++RLDDTKR L++      L  P          
Sbjct: 2   ESRGHSNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQSHHN--LVFPK----HALAH 55

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
           A  ATL S  V+K+L GT+V+TVSNS+NEFVLISDP+GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 56  AATATLGSQHVAKSLVGTSVFTVSNSNNEFVLISDPDGAKSIGLLCFRQEDAEAFLAQVR 115

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R +ELRS A+VVPITLDQVYMLKVEGIAFRFLPDP QIRNALELK  + + GFDGVPVF
Sbjct: 116 SRSRELRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALELKPVN-KGGFDGVPVF 174

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           QSELLVVKK+NKRYCPVYF KEDIE+ELSKVSRASRG GVSQHI V
Sbjct: 175 QSELLVVKKRNKRYCPVYFSKEDIEQELSKVSRASRGPGVSQHIAV 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510391|ref|XP_003523922.1| PREDICTED: uncharacterized protein LOC100802935 isoform 1 [Glycine max]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 189/228 (82%), Gaps = 13/228 (5%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +S+  +NPLLS S+FIHQ+C+RLGS+L++RLDDTKR L++              L  PK 
Sbjct: 2   ESRGHSNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQAHHN----------LLFPKH 51

Query: 65  ALAAT--LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
           ALAAT  L S  V+K+L GT+VYTVSNS+NEFVLISD +GAKSIGLLCFRQEDAEAFLAQ
Sbjct: 52  ALAATSTLGSLHVAKSLVGTSVYTVSNSNNEFVLISDADGAKSIGLLCFRQEDAEAFLAQ 111

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           VR R +ELRS A+VVPITLDQVYMLKVEGIAFRFLPDP QIRNALELK A+ + GFDGVP
Sbjct: 112 VRSRSRELRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALELKPAN-KGGFDGVP 170

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           VFQSELLVVKKK KRYCPVYF KEDIE+ELSKVSRASRG GVSQHI V
Sbjct: 171 VFQSELLVVKKKKKRYCPVYFSKEDIEQELSKVSRASRGPGVSQHIAV 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234162|ref|NP_195061.1| Tic22-like protein [Arabidopsis thaliana] gi|75213572|sp|Q9SZB2.1|TIC22_ARATH RecName: Full=Protein TIC 22, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 22; Short=AtTIC22; Flags: Precursor gi|4490302|emb|CAB38793.1| Tic22-like protein [Arabidopsis thaliana] gi|7270283|emb|CAB80052.1| Tic22-like protein [Arabidopsis thaliana] gi|26452624|dbj|BAC43395.1| Tic22 like protein [Arabidopsis thaliana] gi|28973025|gb|AAO63837.1| putative Tic22 protein [Arabidopsis thaliana] gi|332660809|gb|AEE86209.1| Tic22-like protein [Arabidopsis thaliana]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 184/231 (79%), Gaps = 10/231 (4%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TL-SRRLQRPPLSVPPFAFLS 60
           +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL +RR   P  + PPFA +S
Sbjct: 2   ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query: 61  QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
           Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct: 60  QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query: 120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
           LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct: 120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query: 180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMV
Sbjct: 180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMV 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465499|ref|XP_003603034.1| Tic22 [Medicago truncatula] gi|355492082|gb|AES73285.1| Tic22 [Medicago truncatula]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/226 (67%), Positives = 179/226 (79%), Gaps = 15/226 (6%)

Query: 5   KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPLSVPPFAFLSQPKQ 64
           +SQ   NPLLS S FIHQNC    + L++R +DT++     +Q    + P FA       
Sbjct: 2   ESQGQWNPLLSFSRFIHQNC----NHLATRFEDTRKFAGTLIQSHTRTKPAFA------- 50

Query: 65  ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVR 124
              ATL+S+ V+K+LAGT+VYTVS+S+NEFVL+SD  GAKSIGLLCFRQEDAEAFLAQVR
Sbjct: 51  ---ATLTSNHVAKSLAGTSVYTVSSSNNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVR 107

Query: 125 LRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVF 184
            R+ E R  AKVVPITL+QVY+LKVEGIAFRFLPDP QIRNALEL+AA+ + GFDGVPVF
Sbjct: 108 SRKNEFRGNAKVVPITLEQVYLLKVEGIAFRFLPDPLQIRNALELRAAN-KEGFDGVPVF 166

Query: 185 QSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           QSELLVVKKKNKRYCPVYF KEDIE+ELSKVSR S+G GVS+ IMV
Sbjct: 167 QSELLVVKKKNKRYCPVYFSKEDIEQELSKVSRVSKGPGVSKQIMV 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2119146	268	Tic22-IV "translocon at the in	0.898	0.824	0.679	5.7e-75
TAIR|locus:2095213	313	Tic22-III "translocon at the i	0.845	0.664	0.389	6e-32
UNIPROTKB|Q55386	286	slr0924 "Slr0924 protein" [Syn	0.609	0.524	0.235	6.4e-06

TAIR|locus:2119146 Tic22-IV "translocon at the inner envelope membrane of chloroplasts 22-IV" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 157/231 (67%), Positives = 184/231 (79%)

Query:     5 KSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLS-RRLQRPPLSVPPFAFLS 60
             +S V  NP LS S+FIH  C R  S+LS+R++DTKR   TL+ RR   P  + PPFA +S
Sbjct:     2 ESSVKPNPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRRFSLP--TPPPFASVS 59

Query:    61 QPKQAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAF 119
             Q K      TLS   V+K LAGT+V+TVSN++NEFVLISDP G KSIGLLCFRQEDAEAF
Sbjct:    60 QSKSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAF 119

Query:   120 LAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFD 179
             LAQ RLRR+EL++ AKVVPITLDQVY+LKVEGI+FRFLPDP QI+NALELK++  + GFD
Sbjct:   120 LAQARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALELKSSGNKNGFD 179

Query:   180 GVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
             GVPVFQSELLVV+KKN+RYCPVYF KEDIE+ELSK +RASRG    Q IMV
Sbjct:   180 GVPVFQSELLVVRKKNRRYCPVYFSKEDIERELSKYTRASRG---DQQIMV 227

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2095213 Tic22-III "translocon at the inner envelope membrane of chloroplasts 22-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 88/226 (38%), Positives = 131/226 (57%)

Query:     6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQR-PPLSVPPFAFLSQ--- 61
             SQ L NPL + +T  + N   + S L+S  D  K+ L  R+ R      P +A +S    
Sbjct:    37 SQTL-NPLFNANT--NNNKPNIFSALNSFRDQAKQALDSRISRFNSGKAPVWARISDDGG 93

Query:    62 --------PKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 113
                     P +     LS+D + + LAG  VY +SNS+ EFVL+S  +  KS+GLL  ++
Sbjct:    94 GARAQVTVPIRGSGKGLSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKE 153

Query:   114 EDAEAFLAQVRLRRKELRS-AAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNAL-ELKA 171
             EDAE  L +++     +R   +KVV + L +V+ LKV G+AFR +P+  Q++NAL E K 
Sbjct:   154 EDAETLLKEMKSMDPRMRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKT 213

Query:   172 ADVRTG-FDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVS 216
             A +    F GVPVFQS+ L+++ +N  Y PV+F+KED+EK L + S
Sbjct:   214 AGIDDDDFHGVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRAS 259

GO:0009507 "chloroplast" evidence=ISM

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q55386 slr0924 "Slr0924 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 127 (49.8 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 40/170 (23%), Positives = 88/170 (51%)

Query:    58 FLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNE-FVLISDPNGAKSIGLLCFRQEDA 116
             +L    QALA  L ++ V K L G  V+T+ ++     V + + N  K  G+   +QE A
Sbjct:    66 WLGTTLQALA--LPTEEVVKILQGVPVFTIVDAQGAPLVAVGNDN-EKVTGVFISQQE-A 121

Query:   117 EAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALELK 170
               FL +++ ++ ++ S   V P++L +V  +      + + + F ++P PAQ++ A ++ 
Sbjct:   122 NGFLQELKKQKPDVGSQVSVQPVSLGEVVKIAQANANQTDPLGFAYVPIPAQVQAAQQMP 181

Query:   171 AADVRTGFDGVPVFQSE------LLVVKKKNKRYCPVYFQKEDIEKELSK 214
              ++ +    GVP+F +        L ++++N++  P + +   I++ + +
Sbjct:   182 NSEYQ---GGVPLFVARGGEDQGYLTIQQENEQIIPFFLEASQIQQMVER 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      246       246    0.0010  113 3  11 22  0.41    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  152 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.40u 0.10s 21.50t   Elapsed:  00:00:01
  Total cpu time:  21.40u 0.10s 21.50t   Elapsed:  00:00:01
  Start:  Sat May 11 09:19:53 2013   End:  Sat May 11 09:19:54 2013

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZB2	TIC22_ARATH	No assigned EC number	0.6796	0.8983	0.8246	yes	no
Q9ZST9	TIC22_PEA	No assigned EC number	0.6487	0.8902	0.8690	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
TIGR00995	270	TIGR00995, 3a0901s06TIC22, chloroplast protein imp	7e-97
pfam04278	270	pfam04278, Tic22, Tic22-like family	3e-68

>gnl|CDD|233226 TIGR00995, 3a0901s06TIC22, chloroplast protein import component, Tic22 family

 Score =  283 bits (726), Expect = 7e-97
 Identities = 141/228 (61%), Positives = 161/228 (70%), Gaps = 4/228 (1%)

Query: 6   SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRLQRPPL--SVPPFAFLSQPK 63
           S    NP LS S FI          L SRL++TKRT    L+      ++P FA  +   
Sbjct: 3   SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKRTAKTLLRIGATLGTIPTFAIGTWLG 62

Query: 64  QAL-AATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQ 122
             L A TL  + V+K LAGT+V+TVSN+ NEFVL SD +G KSIGLLCFRQEDAEAFLAQ
Sbjct: 63  TTLQALTLPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQ 122

Query: 123 VRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVP 182
           +R R+ E+ S AKVVPITLDQVY LKVEGI FRFLPDPAQI+NALEL AA+    FDGVP
Sbjct: 123 LRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPAQIKNALELPAAN-SEYFDGVP 181

Query: 183 VFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
           VFQS LLVV+KKN+RYCPVYF KEDIE+ELSK  R S G   SQ IMV
Sbjct: 182 VFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQVIMV 229

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 270

>gnl|CDD|218002 pfam04278, Tic22, Tic22-like family

 Score =  211 bits (538), Expect = 3e-68
 Identities = 93/228 (40%), Positives = 125/228 (54%), Gaps = 17/228 (7%)

Query: 20  IHQNCLRLGSELSSRLDDTKR-TLSRRLQRPPLSVPPFA---FLSQPKQALAATLSSDFV 75
              + L     L +R     R  L+  L      +P  A    L       A  LS D V
Sbjct: 5   FISHFLPKQIGLIARFKSLSRLALTLGLSGFLGLLPALALGSSLGSFAPTSAFALSEDEV 64

Query: 76  SKTLAGTAVYTVSNSSNEFVLISDPN-GAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAA 134
           ++ LAG  V+T++NS+ E +L+S  N G KS+GLL F QEDAEAFL +++ +  EL S A
Sbjct: 65  AEKLAGVPVFTITNSNGEPLLVSGKNGGGKSVGLLFFSQEDAEAFLKELKKQNPELASGA 124

Query: 135 KVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALEL-KAADVR-TGFDGVPVFQS 186
           KVVPI+L QVY L      KVEG+AFRF+PDP Q++NALEL K        F GVPVFQ+
Sbjct: 125 KVVPISLGQVYKLAQSNQKKVEGLAFRFVPDPKQVKNALELLKKNGQNVNDFRGVPVFQA 184

Query: 187 EL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMV 230
                 L +++ NK+Y P +F KED+++ L +  R       S  I V
Sbjct: 185 RSGEGYLTIQQDNKQYIPFFFSKEDLQRMLDRAKRQQPDLASSVKIEV 232

The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	99.52
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	99.43
PF11360	86	DUF3110: Protein of unknown function (DUF3110); In	93.95
PF11042	104	DUF2750: Protein of unknown function (DUF2750); In	82.65
PF11572	103	DUF3234: Protein of unknown function (DUF3234); In	80.51

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=100.00  E-value=9.5e-61  Score=432.27  Aligned_cols=230  Identities=60%  Similarity=0.846  Sum_probs=198.2

Q ss_pred             CCCCCCCccchhhhhhhhhhhhhhcccCCccchhhhhhhcc--CCCCCC-CCCeeeeccch-hhhhccCChHHHHhhcCC
Q 025936            6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL--QRPPLS-VPPFAFLSQPK-QALAATLSSDFVSKTLAG   81 (246)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~p~fa~v~~~~-~~~a~AL~~~eI~ekL~~   81 (246)
                      ++..+|||+++++||||||.|++++|++|+.+|++ +...|  -++.++ .+..+..+... ..+|+|||++||+|+|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~mksL~r~~~~lgl~~~~~~~s~l~~~~~alAL~e~eV~ekL~~   81 (270)
T TIGR00995         3 SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKR-TAKTLLRIGATLGTIPTFAIGTWLGTTLQALTLPPEEVAKILAG   81 (270)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhccchHhhhhhhhccccccccCCHHHHHHHhcC
Confidence            35589999999999999999999999999988877 33333  222233 22222223222 368999999999999999


Q ss_pred             CcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhhhcCCeeEEEecCHH
Q 025936           82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPA  161 (246)
Q Consensus        82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~lk~~~~~f~fVP~~~  161 (246)
                      ||||+|+|++|+||++++++|.+.++.||++++||++||+++|++||++++++||++|+||+||+++.+++.|+|+|+++
T Consensus        82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl~~e~l~F~fiP~~~  161 (270)
T TIGR00995        82 TSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPA  161 (270)
T ss_pred             CceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHHhhcCccEEEeCCHH
Confidence            99999999999999999998877788777777789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCcEEeecceEEEeCCeEEEeeeecHHHHHHHHHHHhhhcCCCCCC--cceeechh---hhh
Q 025936          162 QIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVS--QHIMVEKH---LIT  236 (246)
Q Consensus       162 qVe~A~~L~~~~gq~~f~GVPVF~~~~Lti~~~~~~~iPlFF~KedL~~~l~k~~k~~~~P~~~--~~i~v~sl---~~~  236 (246)
                      ||++|++++ ++++++++|||||++++|||+++|++|||+||+||||+++|+++++++  |+++  .+|+|.+|   +.+
T Consensus       162 qV~~A~~ll-~~~~~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~--p~l~~~~~I~V~~Le~vi~~  238 (270)
T TIGR00995       162 QIKNALELP-AANSEYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRES--PGMADSQVIMVGSMEDVLSK  238 (270)
T ss_pred             HHHHHHHHH-hcCccCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhC--cCcCCCccEEEEeHHHHHHH
Confidence            999999999 456788999999999999999999999999999999999999999999  8887  56887654   556


Q ss_pred             hhh
Q 025936          237 FIC  239 (246)
Q Consensus       237 ~~~  239 (246)
                      |-.
T Consensus       239 m~~  241 (270)
T TIGR00995       239 MET  241 (270)
T ss_pred             Hhc
Confidence            654

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=100.00  E-value=5.1e-52  Score=377.49  Aligned_cols=228  Identities=43%  Similarity=0.625  Sum_probs=131.8

Q ss_pred             ccchhhhhhhhhhhhhhcccCCccchhhhhhhc-cCCCCCCCCCeeeeccchh---hhhccCChHHHHhhcCCCcEEEEE
Q 025936           13 LLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRR-LQRPPLSVPPFAFLSQPKQ---ALAATLSSDFVSKTLAGTAVYTVS   88 (246)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~fa~v~~~~~---~~a~AL~~~eI~ekL~~VPVF~Vt   88 (246)
                      ++++++++|+| .|+++++..++.++.+.-+.. +...|+..|.||..+....   .+++||++++|+|||++||||+|+
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~a~AL~~~~V~~kL~~VPVF~it   81 (274)
T PF04278_consen    3 LLSFSNFISNP-LRLGAELASRMKSLIRWSATLGLQGSLGLLPSTALGSSLGSSQPSSALALPEEEVEEKLAGVPVFTIT   81 (274)
T ss_dssp             ---------------------------------------------------------------HHHHHHHHTTSEEEEEE
T ss_pred             ccccccccccc-ccccccccccccccchhhhccccccccccCCchhcccccccccccccccCCHHHHHHHhcCceEEEEE
Confidence            67899999999 999999999998887744432 3445777888998887543   359999999999999999999999


Q ss_pred             cCCCCeEEEeCCCC-CeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh------hcCCeeEEEecCHH
Q 025936           89 NSSNEFVLISDPNG-AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPA  161 (246)
Q Consensus        89 n~~g~plli~~~~g-~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l------k~~~~~f~fVP~~~  161 (246)
                      |++|+||+++++++ ++++++||||++||+++|++++++||++++++||.+|+||+||++      +.+++.|+|+|+++
T Consensus        82 n~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~~~~k~~~~~F~~vP~~~  161 (274)
T PF04278_consen   82 NSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQENKKKPEGLQFRFVPDPK  161 (274)
T ss_dssp             -TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHHTTT-TT-EEEEEE--HH
T ss_pred             CCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHHhhcCCcCceEEEcCCHH
Confidence            99999999999983 689999999999999999999999999999999999999999999      56899999999999


Q ss_pred             HHHHHHHHHhhccC--CCCCCCcEEeecc----eEEEeCCeEEEeeeecHHHHHHHHHHHhhhcCCCCCC--cceeechh
Q 025936          162 QIRNALELKAADVR--TGFDGVPVFQSEL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVS--QHIMVEKH  233 (246)
Q Consensus       162 qVe~A~~L~~~~gq--~~f~GVPVF~~~~----Lti~~~~~~~iPlFF~KedL~~~l~k~~k~~~~P~~~--~~i~v~sl  233 (246)
                      ||++|+++++++|+  ++|+|||||++++    ||++++|++|+|+||+||||+++|+++++++  |+++  .+|+|.+|
T Consensus       162 qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~~kq~--p~~~~~~~I~V~~L  239 (274)
T PF04278_consen  162 QVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKAKKQQ--PDLAKEPKIQVVSL  239 (274)
T ss_dssp             HHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHHTTT---TT-----EEEEEEH
T ss_pred             HHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHHHHhC--CCCcCCceEEEEcH
Confidence            99999999999888  5799999999888    9999999999999999999999999999999  7766  56888765


Q ss_pred             ---hhhhhhcccc
Q 025936          234 ---LITFICSFEE  243 (246)
Q Consensus       234 ---~~~~~~~~~~  243 (246)
                         +.+|..+.++
T Consensus       240 e~vI~~m~~~~d~  252 (274)
T PF04278_consen  240 EDVIKTMEESDDS  252 (274)
T ss_dssp             HHHHHHHHH---G
T ss_pred             HHHHHHHhcCCCC
Confidence               4556655443

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=99.52  E-value=3.7e-14  Score=129.59  Aligned_cols=116  Identities=23%  Similarity=0.337  Sum_probs=81.2

Q ss_pred             CCCCeeeeccchh-hhhccCChH--HHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcc
Q 025936           52 SVPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRK  128 (246)
Q Consensus        52 ~~p~fa~v~~~~~-~~a~AL~~~--eI~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP  128 (246)
                      ..-.|+++|.+++ ..|+.|..+  +-.+.+.|||||.+.+.+ .+|++.  ++++.++|+||+++|+++.++++++++|
T Consensus       150 ~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~-~~Lti~--~~~~~~iPlFF~kedL~~~l~k~~kq~p  226 (274)
T PF04278_consen  150 EGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGK-GYLTIK--QDNKRIIPLFFDKEDLQAALEKAKKQQP  226 (274)
T ss_dssp             T-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST--B-EET--TTTEEEEEEESSHHHHHHHHHHHTTT-T
T ss_pred             cCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCC-ceEEEe--eCCeEEEEEEecHHHHHHHHHHHHHhCC
Confidence            3568999999887 777888333  444889999999999999 778774  3467899999999999999999999999


Q ss_pred             cccCCceEEEEehhhHhhh--hc---CCeeEEEecCHHHHHHHHHHH
Q 025936          129 ELRSAAKVVPITLDQVYML--KV---EGIAFRFLPDPAQIRNALELK  170 (246)
Q Consensus       129 ~la~~~kV~~V~L~~Vy~l--k~---~~~~f~fVP~~~qVe~A~~L~  170 (246)
                      +++.+.+|.+++|+.+++.  ..   +--.+.|||+.+.+++++++.
T Consensus       227 ~~~~~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~  273 (274)
T PF04278_consen  227 DLAKEPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLK  273 (274)
T ss_dssp             T-----EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS-
T ss_pred             CCcCCceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhc
Confidence            9999999999999999987  22   346899999999999998753

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=99.43  E-value=4.9e-13  Score=121.89  Aligned_cols=111  Identities=18%  Similarity=0.243  Sum_probs=93.8

Q ss_pred             CCCeeeeccchh-hhhccCChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhccccc
Q 025936           53 VPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR  131 (246)
Q Consensus        53 ~p~fa~v~~~~~-~~a~AL~~~eI~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la  131 (246)
                      ...|+++|.+++ ..|+.|.. .-.+...|||||.+     ++|++..  +++.++||||+++|++++|+++|+++|+++
T Consensus       151 ~l~F~fiP~~~qV~~A~~ll~-~~~~~~~GVPlF~~-----~~Lti~~--~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~  222 (270)
T TIGR00995       151 GIGFRFLPDPAQIKNALELPA-ANSEYFDGVPVFQS-----GLLVVQK--KNERYCPVYFSKEDIEQELSKFKRESPGMA  222 (270)
T ss_pred             CccEEEeCCHHHHHHHHHHHh-cCccCCCCccEEee-----cceEEEe--CCeEEEeeEeeHHHHHHHHHHHhHhCcCcC
Confidence            389999999987 77777762 23455579999999     7788853  457899999999999999999999999999


Q ss_pred             CCceEEEEehhhHhhh--h--cC---CeeEEEecCHHHHHHHHHHHh
Q 025936          132 SAAKVVPITLDQVYML--K--VE---GIAFRFLPDPAQIRNALELKA  171 (246)
Q Consensus       132 ~~~kV~~V~L~~Vy~l--k--~~---~~~f~fVP~~~qVe~A~~L~~  171 (246)
                      .+.+|.+++|+.+++.  .  ++   .-.+.|+|+++.+++++++.+
T Consensus       223 ~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~  269 (270)
T TIGR00995       223 DSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQHMQSLIA  269 (270)
T ss_pred             CCccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHHHHHHhc
Confidence            9999999999999977  2  12   368889999999999998764

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function

Probab=93.95  E-value=0.55  Score=36.32  Aligned_cols=72  Identities=15%  Similarity=0.324  Sum_probs=55.6

Q ss_pred             EEEEE----cCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhhh-hcCCeeEEEec
Q 025936           84 VYTVS----NSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML-KVEGIAFRFLP  158 (246)
Q Consensus        84 VF~Vt----n~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~l-k~~~~~f~fVP  158 (246)
                      ||+++    ..+++...++..+  +.+.++|=+.+||+.+...|..++-   ....|..+..+.+..+ ++.|..+++||
T Consensus         1 v~VL~f~~~~~~eGI~si~~~~--~~~Vl~FE~edDA~RYa~lLEAqd~---~~p~Ve~id~~~i~~fC~~~gy~~~iv~   75 (86)
T PF11360_consen    1 VYVLLFNAGTETEGIYSIQNKD--RNVVLMFEDEDDAERYAGLLEAQDF---PDPTVEEIDPEEIEEFCRSAGYEYEIVP   75 (86)
T ss_pred             CEEEEecCCCCCCcEEEEEeCC--CCEEEEEccHHHHHHHHHHHHhcCC---CCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence            56676    2344666776554  5688999999999999999987642   2358999999999999 66789999998


Q ss_pred             CH
Q 025936          159 DP  160 (246)
Q Consensus       159 ~~  160 (246)
                      .-
T Consensus        76 ~g   77 (86)
T PF11360_consen   76 PG   77 (86)
T ss_pred             CC
Confidence            64

>PF11042 DUF2750: Protein of unknown function (DUF2750); InterPro: IPR021284 This family is conserved in Proteobacteria

Probab=82.65  E-value=8.8  Score=29.96  Aligned_cols=72  Identities=24%  Similarity=0.367  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHhh-----hhcCCeeEE
Q 025936           81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYM-----LKVEGIAFR  155 (246)
Q Consensus        81 ~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~-----lk~~~~~f~  155 (246)
                      .==||++.+.+| .++....++. .+.+|+=+++.|++....      + .++.++..++|+.-.+     |.++++..-
T Consensus        12 ~e~vw~L~~~~g-~~~~~~~~~~-~~~p~W~~~~~A~~~~~~------e-w~~~~~~~I~L~~Fle~wl~~L~~d~~~vg   82 (104)
T PF11042_consen   12 SEEVWGLKDEDG-WVLCDSDEGE-DVLPFWPSKEFAEACATD------E-WADYKPKEISLDEFLEEWLPGLQEDGVLVG   82 (104)
T ss_pred             CCEEEEEEcCCc-EEEeecCCCc-EEEEeCCCHHHHHHHHhc------c-cccCeEEEEEHHHHHHHHhHhHHHCCCEEE
Confidence            345899999999 7777666543 479999999999996654      1 4578999999998875     366776666


Q ss_pred             EecCHH
Q 025936          156 FLPDPA  161 (246)
Q Consensus       156 fVP~~~  161 (246)
                      +.|+..
T Consensus        83 v~~~~~   88 (104)
T PF11042_consen   83 VFPNPD   88 (104)
T ss_pred             EecCCC
Confidence            666543

The function is not known.

>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function

Probab=80.51  E-value=7.5  Score=30.88  Aligned_cols=56  Identities=25%  Similarity=0.478  Sum_probs=41.7

Q ss_pred             CcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEe---hhhHh
Q 025936           82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPIT---LDQVY  145 (246)
Q Consensus        82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la~~~kV~~V~---L~~Vy  145 (246)
                      -|=|++.|..|+-++...- | .....++.|.++|++|+++    +|++  +.+|.++-   |.++|
T Consensus         7 g~WYVLe~~pGEHLvleal-g-qrls~iWtS~~~A~~F~~~----~p~~--GM~V~~Le~~aLKeaf   65 (103)
T PF11572_consen    7 GTWYVLEDEPGEHLVLEAL-G-QRLSGIWTSRELAQAFLAR----HPEL--GMRVSPLESWALKEAF   65 (103)
T ss_dssp             SSEEEEESSTT-BEEEEET-T-EEEEEEBSSHHHHHHHHHT----STSS----EEEEE-SHHHHHHH
T ss_pred             cceEEecCCCCceeeHHHH-h-hhHHhheecHHHHHHHHHh----Cccc--CcEeecchhHHHHHHH
Confidence            4779999999999998665 3 4588899999999999976    6873  68888874   55555

Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	2e-35

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP} Length = 252

 Score =  126 bits (316), Expect = 2e-35
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 28/183 (15%)

Query: 70  LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAK------SIGLLCFRQEDAEAFLAQV 123
           LS   + + L    +Y V+N     +    PN         SI      +++A+AF+ ++
Sbjct: 2   LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINEL 61

Query: 124 RL------RRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPAQIRNALEL-- 169
           R       + +E+  + +V  + L  +Y            + F F P   +I+ A++L  
Sbjct: 62  RNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLR 121

Query: 170 KAADVRTGFDGVPVFQSE--------LLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRG 221
           ++      F  VP+F            + V   N++  P++  K+D +  L +V      
Sbjct: 122 QSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPK 181

Query: 222 AGV 224
           A +
Sbjct: 182 ADI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	100.0
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	100.0
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	99.5
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	99.14
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	81.95

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=100.00  E-value=1.2e-45  Score=330.93  Aligned_cols=169  Identities=22%  Similarity=0.350  Sum_probs=154.2

Q ss_pred             CChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCC------CeeEEEEEecHHHHHHHHHHHHH---hcc---cccCCceEE
Q 025936           70 LSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNG------AKSIGLLCFRQEDAEAFLAQVRL---RRK---ELRSAAKVV  137 (246)
Q Consensus        70 L~~~eI~ekL~~VPVF~Vtn~~g~plli~~~~g------~~~v~~fFfs~eDAqa~L~qlk~---~nP---~la~~~kV~  137 (246)
                      ||++||+|||++||||+|||++|+||+++++++      +++|++||||++||++||+++|+   +||   ++++++||+
T Consensus         2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~~~kV~   81 (252)
T 4ev1_A            2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKSLQVT   81 (252)
T ss_dssp             CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhccCceEE
Confidence            899999999999999999999999999998872      46899999999999999999999   999   999999999


Q ss_pred             EEehhhHhhh------hcCCeeEEEecCHHHHHHHHHHHhhccC--CCCCCCcEEeec------ceEEEeC--CeEEEee
Q 025936          138 PITLDQVYML------KVEGIAFRFLPDPAQIRNALELKAADVR--TGFDGVPVFQSE------LLVVKKK--NKRYCPV  201 (246)
Q Consensus       138 ~V~L~~Vy~l------k~~~~~f~fVP~~~qVe~A~~L~~~~gq--~~f~GVPVF~~~------~Lti~~~--~~~~iPl  201 (246)
                      +|+||+||++      +.+++.|+|||+++||++|++|++++|+  ++|+|||||++.      +|||+++  |++||||
T Consensus        82 ~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPl  161 (252)
T 4ev1_A           82 AVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPL  161 (252)
T ss_dssp             EEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEEE
T ss_pred             EeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEee
Confidence            9999999999      4578999999999999999999999987  568899999976      7999999  9999999


Q ss_pred             eecHHHHHHHHHHHhhhcCCCCCCcceeechhh---hhhhhccc
Q 025936          202 YFQKEDIEKELSKVSRASRGAGVSQHIMVEKHL---ITFICSFE  242 (246)
Q Consensus       202 FF~KedL~~~l~k~~k~~~~P~~~~~i~v~sl~---~~~~~~~~  242 (246)
                      ||+||||+++|+++++++  |+  .+|+|.+|-   .+|-.+++
T Consensus       162 FF~KedL~~~l~~~kkq~--P~--~~I~V~~Le~vI~~m~~~~d  201 (252)
T 4ev1_A          162 FLSKQDAQGLLGQVKPKH--PK--ADIQVLDIDGVLQTLQDKND  201 (252)
T ss_dssp             ESSHHHHHHHHHHHTTTC--TT--CEEEEEEHHHHHHHHHHCCC
T ss_pred             EecHHHHHHHHHHHHHhC--CC--CcEEEeeHHHHHHHHhcCcc
Confidence            999999999999999999  88  789988764   44444444

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.3e-42  Score=313.75  Aligned_cols=166  Identities=19%  Similarity=0.283  Sum_probs=146.2

Q ss_pred             ccCChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHH-hcccccCCceEEEEehhhHhh
Q 025936           68 ATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRL-RRKELRSAAKVVPITLDQVYM  146 (246)
Q Consensus        68 ~AL~~~eI~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~-~nP~la~~~kV~~V~L~~Vy~  146 (246)
                      .++++++|+|||++||||+|||++|+||++++++  ++|++||||++||+++|+++++ ++|++++++||++++|++||+
T Consensus        63 ~~~~e~~I~EKL~~VPVF~Itn~~G~Pll~~~~~--~~V~~fF~s~~DA~a~L~el~k~~~~~~~~~~kV~pvsL~kvy~  140 (279)
T 4e6z_A           63 KRYDERPIEEKLEVIPVFLITNYNSSPYIFQENE--KQVCYMFLCPYDAENMLNDMIKYNGMKYNGNIKIHNITMKKAYE  140 (279)
T ss_dssp             -----CCHHHHSTTSEEEEEECTTCCBCCEEETT--EEEEEEESSHHHHHHHHHHHHHHCHHHHTTSCEEEEEEHHHHHH
T ss_pred             hcccHHhHHHHhcCCCEEEEEcCCCCEEEecCCC--CeEEEEECCHHHHHHHHHHHHhccCcccccCceEEEecHHHHHH
Confidence            4899999999999999999999999999998764  6899999999999999999755 558999999999999999998


Q ss_pred             h------------------hcCCeeEEEecCHHHHHHHHHHHhhccCCCCCCCcEEeecceEEEeCCeEEEeeeecHHHH
Q 025936          147 L------------------KVEGIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDI  208 (246)
Q Consensus       147 l------------------k~~~~~f~fVP~~~qVe~A~~L~~~~gq~~f~GVPVF~~~~Lti~~~~~~~iPlFF~KedL  208 (246)
                      +                  +.+++.|+|+|+++||++|+.+++++|++ ++|||||++++|||++++++++|+||+||||
T Consensus       141 l~~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq~-~~gVPVF~~~~Lti~k~~k~iiPlFF~keDL  219 (279)
T 4e6z_A          141 LMKEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKKS-ELMYPVFYAENLYIQKDGSNIIPLFFDLEDL  219 (279)
T ss_dssp             HHHHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTST-TCCSEEEEETTCCEECSSSEEEEEESSHHHH
T ss_pred             HHhhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCCc-CCCccEEEEeeEEEeeCCeEEEeeEecHHHH
Confidence            8                  22579999999999999999999888865 8899999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCC-Ccceeechhhhhhh
Q 025936          209 EKELSKVSRASRGAGV-SQHIMVEKHLITFI  238 (246)
Q Consensus       209 ~~~l~k~~k~~~~P~~-~~~i~v~sl~~~~~  238 (246)
                      +++|+++++++  |+. .++|+|.+|..++.
T Consensus       220 ~~~l~q~~~~~--p~~~~~~I~V~~L~~ll~  248 (279)
T 4e6z_A          220 KEAIEEQKNKA--LSKVDYKIKVLNMVDLIF  248 (279)
T ss_dssp             HHHHHHHHTTC--SSCCCCCEEEEEHHHHHT
T ss_pred             HHHHHHhhhcC--CCCCCCceEEEhHHHHHh
Confidence            99999999988  543 37899999977764

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=99.50  E-value=1.7e-14  Score=129.18  Aligned_cols=118  Identities=18%  Similarity=0.227  Sum_probs=97.2

Q ss_pred             CCCeeeeccchh-hhhccCChH--HHHhhcCCCcEEEEEc-CCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcc
Q 025936           53 VPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSN-SSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRK  128 (246)
Q Consensus        53 ~p~fa~v~~~~~-~~a~AL~~~--eI~ekL~~VPVF~Vtn-~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP  128 (246)
                      .-.|+++|.+++ ..|+.|..+  +-.+.+.|||||.+.. .++++|++...+|++.++||||+++|++++|+++++++|
T Consensus       101 ~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPlFF~KedL~~~l~~~kkq~P  180 (252)
T 4ev1_A          101 RLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHP  180 (252)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEEEESSHHHHHHHHHHHTTTCT
T ss_pred             CceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEeeEecHHHHHHHHHHHHHhCC
Confidence            578999999887 677777655  3456788999999995 556888886544468899999999999999999999999


Q ss_pred             cccCCceEEEEehhhHhhh--hc-C--CeeEEEecCHHHHHHHHHHHhhcc
Q 025936          129 ELRSAAKVVPITLDQVYML--KV-E--GIAFRFLPDPAQIRNALELKAADV  174 (246)
Q Consensus       129 ~la~~~kV~~V~L~~Vy~l--k~-~--~~~f~fVP~~~qVe~A~~L~~~~g  174 (246)
                      +    .+|.+++|+.+++.  .+ +  --.++|||+.+.+++++++.++.+
T Consensus       181 ~----~~I~V~~Le~vI~~m~~~~d~~~~~ivfiPs~es~e~i~~~~~~~~  227 (252)
T 4ev1_A          181 K----ADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRTLPKPPN  227 (252)
T ss_dssp             T----CEEEEEEHHHHHHHHHHCCCGGGGGEEEECCHHHHHHHHTSCCCC-
T ss_pred             C----CcEEEeeHHHHHHHHhcCcccccceEEEECCHHHHHHHHhccccCC
Confidence            7    89999999999987  22 2  247899999999999999875444

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=99.14  E-value=1.1e-10  Score=105.82  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=88.1

Q ss_pred             CCCeeeeccchh-hhhccCChHHHHhhcCCCcEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhccccc
Q 025936           53 VPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR  131 (246)
Q Consensus        53 ~p~fa~v~~~~~-~~a~AL~~~eI~ekL~~VPVF~Vtn~~g~plli~~~~g~~~v~~fFfs~eDAqa~L~qlk~~nP~la  131 (246)
                      .-.|.++|...+ ..|..+..+.- +.-.|||||.+.+     +++..  |++.++|+||+++|+++.++++++++|+ .
T Consensus       163 ~l~fr~vP~~~qV~~A~~ll~~~g-q~~~gVPVF~~~~-----Lti~k--~~k~iiPlFF~keDL~~~l~q~~~~~p~-~  233 (279)
T 4e6z_A          163 NIYWKLISSKRQLQNALYYLSFTK-KSELMYPVFYAEN-----LYIQK--DGSNIIPLFFDLEDLKEAIEEQKNKALS-K  233 (279)
T ss_dssp             CEEEEEECCHHHHHHHHTTSCTTT-STTCCSEEEEETT-----CCEEC--SSSEEEEEESSHHHHHHHHHHHHTTCSS-C
T ss_pred             ceeeEecCCHHHHHHHHHHHHhcC-CcCCCccEEEEee-----EEEee--CCeEEEeeEecHHHHHHHHHHhhhcCCC-C
Confidence            467999999877 67777766643 3467899999963     66644  3467999999999999999999999997 5


Q ss_pred             CCceEEEEehhhHhhhhcCCeeEEEecCHHHHHHHHHHHh
Q 025936          132 SAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKA  171 (246)
Q Consensus       132 ~~~kV~~V~L~~Vy~lk~~~~~f~fVP~~~qVe~A~~L~~  171 (246)
                      ...+|.+++|..+..-.+ .-.|.|||+++.+++++++..
T Consensus       234 ~~~~I~V~~L~~ll~~~d-~~kivFIPs~eSlefi~~l~~  272 (279)
T 4e6z_A          234 VDYKIKVLNMVDLIFTED-HKKFGFVPSTQSVKYLDKLNI  272 (279)
T ss_dssp             CCCCEEEEEHHHHHTCSC-CTTEEEECCHHHHHHHHHHHH
T ss_pred             CCCceEEEhHHHHHhhCC-cCeEEEECCHHHHHHHHHHhc
Confidence            568899999999886533 337899999999999999854

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=81.95  E-value=12  Score=28.20  Aligned_cols=124  Identities=10%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCCeEEEeCCCCCeeEEEEEe------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHhh----h-hcC
Q 025936           82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCF------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYM----L-KVE  150 (246)
Q Consensus        82 VPVF~Vtn~~g~plli~~~~g~~~v~~fFf------s~eDAqa~L~qlk~~nP~la~~~kV~~V~L~~Vy~----l-k~~  150 (246)
                      +|-|.+.|.+|..+..+.-.|. -+...|.      ++.. ...|+++.++.++  .+++|..|+.+.--+    . +..
T Consensus         9 ~p~f~l~~~~G~~~~l~~~~gk-~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~--~~~~vv~v~~d~~~~~~~~~~~~~   84 (152)
T 2lrn_A            9 APAITGIDLKGNSVSLNDFKGK-YVLVDFWFAGCSWCRKE-TPYLLKTYNAFKD--KGFTIYGVSTDRREEDWKKAIEED   84 (152)
T ss_dssp             CCCCEEECSSSCEEESGGGTTS-EEEEEEECTTCTTHHHH-HHHHHHHHHHHTT--TTEEEEEEECCSCHHHHHHHHHHH
T ss_pred             CCCceeEcCCCCEEeHHHcCCC-EEEEEEECCCChhHHHH-HHHHHHHHHHhcc--CCeEEEEEEccCCHHHHHHHHHHh
Confidence            6889999999998887665554 3444444      2222 2334455544333  358888888874211    1 234


Q ss_pred             CeeEEEecCHHHHHHHHHHHhhccCCCCCCCcEEeecceEEEeCCeEEEeeeecHHHHHHHHHHHhhhc
Q 025936          151 GIAFRFLPDPAQIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRAS  219 (246)
Q Consensus       151 ~~~f~fVP~~~qVe~A~~L~~~~gq~~f~GVPVF~~~~Lti~~~~~~~iPlFF~KedL~~~l~k~~k~~  219 (246)
                      ++.|.++.+.....  ..+.+.-|   ..|+|-++    .|.++|+ ++-.+.+.+++++.|+++.+..
T Consensus        85 ~~~~~~~~d~~~~~--~~~~~~~~---v~~~P~~~----lid~~G~-i~~~~~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A           85 KSYWNQVLLQKDDV--KDVLESYC---IVGFPHII----LVDPEGK-IVAKELRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             TCCSEEEEECHHHH--HHHHHHTT---CCSSCEEE----EECTTSE-EEEECCCTTHHHHHHHHHHTSS
T ss_pred             CCCCeEEecccchh--HHHHHHhC---CCcCCeEE----EECCCCe-EEEeeCCHHHHHHHHHHHHhhc
Confidence            56677776653221  11222111   34788643    2333443 4445678999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00