Citrus Sinensis ID: 025947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNICF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEcccccccccEEEEEEEcccccccccccccccEEEEEEccccccHHHHHcEEEEEEEEcccccEEEEEEEcccccHHHHHccccccEEEEEEEEEEEEccccEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccccccEEEEcccccccHEEEccccHccEEEcccEEEEcccccEEcccccccEEEEEEHHHccccHHHHEEEEEEEEEccccccEEcccccccccHHHHHHHHHHHHHHHHHEEEEEccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mavgknkriskgkkggkkkaadpfakkdwydikapscfrvrnvgkTLVTRTQGTKIASEGLKHRVFEvslgdlhneeEHAYRKIRLRaedvqgknvltnfwgmdftTDKLRSLVRKWHTLIEAYVDvkttdnytLRMFCIGftkrlpnqvkRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKatlsiyplqnvFIRKVKilkapkfdlgklmevCPVFlfllplnicf
Flexible Loop (DISEMBL)
mavgknkriskgkkggkkkaadpfakkdwydikapscfrvrnvgktlvtrtqgtkiaseglkhrvfevslgdlhneEEHAYRKirlraedvqgknvltnfwgmdftTDKLRSLVRKWHTLIEayvdvkttdnyTLRMFCIGFtkrlpnqvkrTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREiekatlsiyplqNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNICF
Low Complexity Region (SEG)
MAVgknkriskgkkggkkkaadpfakkDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNICF
Disordered region (IsUnstruct)
**************************KDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNIC*
Disordered Region (DISOPRED)
**************************KDWYDIKAPSCFRVRNVGKTLVTRT******SEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNICF
Disordered Region (DISEMBL)
*********************DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNICF
Disordered Region (DISPRO)
******K******KGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNICF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFLFLLPLNICF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
A7Q5X9	234	40S ribosomal protein S3a	yes	no	0.946	0.991	0.887	1e-113
P33444	261	40S ribosomal protein S3a	N/A	no	0.942	0.885	0.874	1e-111
Q8GTE3	261	40S ribosomal protein S3a	N/A	no	0.942	0.885	0.874	1e-111
P49198	260	40S ribosomal protein S3a	N/A	no	0.942	0.888	0.870	1e-111
P49397	262	40S ribosomal protein S3a	yes	no	0.942	0.881	0.861	1e-109
A5B4K1	261	40S ribosomal protein S3a	no	no	0.942	0.885	0.865	1e-109
Q285L8	261	40S ribosomal protein S3a	N/A	no	0.942	0.885	0.852	1e-108
Q42262	262	40S ribosomal protein S3a	yes	no	0.942	0.881	0.848	1e-107
Q9CAV0	262	40S ribosomal protein S3a	no	no	0.942	0.881	0.835	1e-106
Q9MBB3	261	40S ribosomal protein S3a	N/A	no	0.942	0.885	0.852	1e-105

>sp|A7Q5X9|RS3A2_VITVI 40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/232 (88%), Positives = 215/232 (92%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F VRNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCI FTK+  NQ K+T YAQ+SQIRQIRRKMREIM  QAASCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVC 232
           LK LV KFI E+IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLME C
Sbjct: 181 LKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEAC 232

Vitis vinifera (taxid: 29760)

>sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/231 (87%), Positives = 216/231 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F VRNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           L+HRVFE+SL DL  +E+H++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKW +L
Sbjct: 61  LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKMREIM+ QA SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Catharanthus roseus (taxid: 4058)

>sp|Q8GTE3|RS3A_CICAR 40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/231 (87%), Positives = 218/231 (94%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +E++A+RKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILK+PKFDLGKLMEV
Sbjct: 181 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEV 231

Cicer arietinum (taxid: 3827)

>sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/231 (87%), Positives = 216/231 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F  RNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGMD TTDKLRSLV+KW +L
Sbjct: 61  LKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDN+TLRMFCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIM+ QA +CD
Sbjct: 121 IEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFD+GKLMEV
Sbjct: 181 LKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEV 231

Helianthus annuus (taxid: 4232)

>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/231 (86%), Positives = 211/231 (91%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKG KKK  DPFAKKDWYDIKAPS F VRN+GKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD Y LR+FCIGFTKR PNQVKRTCYAQASQIRQIRRKM EIM  QA+SCD
Sbjct: 121 IEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E+IG+EIEKAT SI+PLQNVF+RKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEV 231

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A5B4K1|RS3A1_VITVI 40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 212/231 (91%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F VRNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLR+FCI FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCD
Sbjct: 121 IEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV+KFI E IGREIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEV 231

Vitis vinifera (taxid: 29760)

>sp|Q285L8|RS3A_TOBAC 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/231 (85%), Positives = 213/231 (92%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADP+AKKDWYDIKAPS F ++NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLRMFCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IGREIEKAT SI+PLQNV+IRKVKILKAPKFD+GKLMEV
Sbjct: 181 LKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEV 231

Nicotiana tabacum (taxid: 4097)

>sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/231 (84%), Positives = 210/231 (90%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAP  F  RNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD YTLRMFCI FTKR  NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCD
Sbjct: 121 IEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/231 (83%), Positives = 211/231 (91%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAPS F  RNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E++AYRKIRLRAEDVQG+NVL  FWGMDFTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLR+FCI FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+V
Sbjct: 181 LKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDV 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MBB3|RS3A_DAUCA 40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/231 (85%), Positives = 211/231 (91%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEV L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IGREIEKAT SI+PLQNVFIRKVKILKAPKFD+GKLMEV
Sbjct: 181 LKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEV 231

Daucus carota (taxid: 4039)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
406870061	261	40S ribosomal protein S3a-like protein [	0.942	0.885	0.900	1e-113
449432676	261	PREDICTED: 40S ribosomal protein S3a-lik	0.942	0.885	0.900	1e-113
255552081	260	40S ribosomal protein S3a, putative [Ric	0.942	0.888	0.896	1e-112
449455292	260	PREDICTED: 40S ribosomal protein S3a-lik	0.942	0.888	0.896	1e-112
359806537	261	uncharacterized protein LOC100805519 [Gl	0.942	0.885	0.887	1e-111
269969547	234	RecName: Full=40S ribosomal protein S3a-	0.946	0.991	0.887	1e-111
359806025	261	uncharacterized protein LOC100813273 [Gl	0.942	0.885	0.891	1e-111
357480901	261	40S ribosomal protein S3a-like protein [	0.942	0.885	0.891	1e-111
217074782	261	unknown [Medicago truncatula] gi|3884927	0.942	0.885	0.887	1e-111
118488090	259	unknown [Populus trichocarpa]	0.942	0.891	0.891	1e-111

>gi|406870061|gb|AFS65104.1| 40S ribosomal protein S3a-like protein [Elaeis guineensis]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/231 (90%), Positives = 218/231 (94%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPS F VRN+GKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQVKRTCYAQ SQIRQIRRKMREIM+ QAASCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMVNQAASCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV+KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKDLVQKFIPEVIGKEIEKATTSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432676|ref|XP_004134125.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] gi|449518719|ref|XP_004166384.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/231 (90%), Positives = 218/231 (94%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPS F V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +EEHAYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEISLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQVKRTCYAQ+SQIRQIRRKMREIM+ QA+SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552081|ref|XP_002517085.1| 40S ribosomal protein S3a, putative [Ricinus communis] gi|223543720|gb|EEF45248.1| 40S ribosomal protein S3a, putative [Ricinus communis]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/231 (89%), Positives = 218/231 (94%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F+V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL  +E+HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQGDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQ+KRTCYAQ+SQI QIRRKMREIM AQAASCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQIKRTCYAQSSQIGQIRRKMREIMTAQAASCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IG+EIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVRKFIPETIGKEIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEV 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455292|ref|XP_004145387.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] gi|449472057|ref|XP_004153483.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/231 (89%), Positives = 216/231 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKK  DPFAKKDWYDIKAPS F V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +EEHAYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEVSLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IG++IEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806537|ref|NP_001241005.1| uncharacterized protein LOC100805519 [Glycine max] gi|255646854|gb|ACU23898.1| unknown [Glycine max]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/231 (88%), Positives = 219/231 (94%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+HA++KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQ+RQIRRKMREIM+ QAA+CD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQVRQIRRKMREIMVNQAAACD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269969547|sp|A7Q5X9.1|RS3A2_VITVI RecName: Full=40S ribosomal protein S3a-2

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/232 (88%), Positives = 215/232 (92%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F VRNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCI FTK+  NQ K+T YAQ+SQIRQIRRKMREIM  QAASCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVC 232
           LK LV KFI E+IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLME C
Sbjct: 181 LKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEAC 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806025|ref|NP_001241430.1| uncharacterized protein LOC100813273 [Glycine max] gi|255642505|gb|ACU21516.1| unknown [Glycine max]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/231 (89%), Positives = 217/231 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E+HA++KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM  QA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI EIIG+EIEKAT SIYPLQNVF+RKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEV 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480901|ref|XP_003610736.1| 40S ribosomal protein S3a-like protein [Medicago truncatula] gi|355512071|gb|AES93694.1| 40S ribosomal protein S3a-like protein [Medicago truncatula]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/231 (89%), Positives = 218/231 (94%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS F+V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E++A+RKIRLRAEDVQGKN+LTNFWGMDFTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIMI QA SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074782|gb|ACJ85751.1| unknown [Medicago truncatula] gi|388492750|gb|AFK34441.1| unknown [Medicago truncatula]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/231 (88%), Positives = 219/231 (94%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F+V+NVGKTLV+RTQGTKIAS+G
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +EEHA+RKIRLRAEDVQGKN+LTNFWGM+FTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKM EIMI QA+SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LKGLV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKGLVHKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488090|gb|ABK95865.1| unknown [Populus trichocarpa]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/231 (89%), Positives = 216/231 (93%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKAADPF+KKDWYDIKAPS F V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFSVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LKHRVFEVSL DL  +E++AYRKIRLRAEDVQG+NVLTNFWGM+FT DKLRSLVRKW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLTNFWGMNFTNDKLRSLVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA+VDVKTTDNYTLRMFCIGFTKR PNQVKRT YAQ+SQIRQIRRKMREIM AQAASCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTTYAQSSQIRQIRRKMREIMTAQAASCD 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           LK LV KFI E IG+EIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEV
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2139574	262	AT4G34670 [Arabidopsis thalian	0.832	0.778	0.843	5.9e-89
TAIR|locus:2114840	262	AT3G04840 [Arabidopsis thalian	0.832	0.778	0.828	5.3e-88
UNIPROTKB|Q56JV9	264	RPS3A "40S ribosomal protein S	0.828	0.768	0.656	8.9e-70
UNIPROTKB|F2Z4Q5	264	RPS3A "Uncharacterized protein	0.828	0.768	0.656	8.9e-70
UNIPROTKB|D6RG13	223	RPS3A "40S ribosomal protein S	0.828	0.910	0.656	8.9e-70
UNIPROTKB|P61247	264	RPS3A "40S ribosomal protein S	0.828	0.768	0.656	8.9e-70
UNIPROTKB|F2Z5C7	264	RPS3A "Uncharacterized protein	0.828	0.768	0.656	8.9e-70
UNIPROTKB|P61246	260	RPS3A "40S ribosomal protein S	0.828	0.780	0.656	8.9e-70
MGI|MGI:1202063	264	Rps3a1 "ribosomal protein S3A1	0.828	0.768	0.656	8.9e-70
RGD|62078	264	Rps3a "ribosomal protein S3a"	0.828	0.768	0.656	8.9e-70

TAIR|locus:2139574 AT4G34670 [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 172/204 (84%), Positives = 184/204 (90%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLR
Sbjct:    28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLR 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
             AEDVQG+NVLT FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD YTLRMFCI FTKR  
Sbjct:    88 AEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRA 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCDLK LV KFI E IGREIEKAT  IYPL
Sbjct:   148 NQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
             QNVFIRKVKILKAPKFDLGKLMEV
Sbjct:   208 QNVFIRKVKILKAPKFDLGKLMEV 231

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2114840 AT3G04840 [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 169/204 (82%), Positives = 185/204 (90%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E++AYRKIRLR
Sbjct:    28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLR 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
             AEDVQG+NVL  FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLR+FCI FTKR  
Sbjct:    88 AEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRA 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCDLK LV KFI E IGREIEKAT  IYPL
Sbjct:   148 NQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
             QNVFIRKVKILKAPKFDLGKLM+V
Sbjct:   208 QNVFIRKVKILKAPKFDLGKLMDV 231

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q56JV9 RPS3A "40S ribosomal protein S3a" [Bos taurus (taxid:9913)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMEL 231

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4Q5 RPS3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMEL 231

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|D6RG13 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:     9 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 67

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    68 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 127

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   128 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 187

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   188 HDVFVRKVKMLKKPKFELGKLMEL 211

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P61247 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMEL 231

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;NAS;IMP;TAS

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0006413 "translational initiation" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=NAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5C7 RPS3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMEL 231

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61246 RPS3A "40S ribosomal protein S3a" [Felis catus (taxid:9685)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    25 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 83

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    84 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 143

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   144 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 203

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   204 HDVFVRKVKMLKKPKFELGKLMEL 227

GO:0030529 "ribonucleoprotein complex" evidence=ISS

MGI|MGI:1202063 Rps3a1 "ribosomal protein S3A1" [Mus musculus (taxid:10090)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMEL 231

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0031369 "translation initiation factor binding" evidence=ISO

RGD|62078 Rps3a "ribosomal protein S3a" [Rattus norvegicus (taxid:10116)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query:    28 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
             DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L 
Sbjct:    29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLI 87

Query:    88 AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
              EDVQGKN LTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  
Sbjct:    88 TEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN 147

Query:   148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
             NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL
Sbjct:   148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207

Query:   208 QNVFIRKVKILKAPKFDLGKLMEV 231
              +VF+RKVK+LK PKF+LGKLME+
Sbjct:   208 HDVFVRKVKMLKKPKFELGKLMEL 231

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006412 "translation" evidence=ISO;ISS

GO:0006917 "induction of apoptosis" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS

GO:0031369 "translation initiation factor binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0UFP1	RS3A_PHANO	No assigned EC number	0.6812	0.9306	0.8941	N/A	no
P0CQ59	RS3A_CRYNB	No assigned EC number	0.6652	0.9387	0.8880	N/A	no
P0CQ58	RS3A_CRYNJ	No assigned EC number	0.6652	0.9387	0.8880	yes	no
Q9CAV0	RS3A1_ARATH	No assigned EC number	0.8354	0.9428	0.8816	no	no
A6RZS5	RS3A_BOTFB	No assigned EC number	0.6666	0.9428	0.9023	N/A	no
Q6C2R9	RS3A_YARLI	No assigned EC number	0.6550	0.9346	0.8980	yes	no
A5B4K1	RS3A1_VITVI	No assigned EC number	0.8658	0.9428	0.8850	no	no
B6JWF7	RS3A_SCHJY	No assigned EC number	0.6478	0.9387	0.9126	N/A	no
A1CZL7	RS3A_NEOFI	No assigned EC number	0.6839	0.9428	0.9023	N/A	no
Q2GW51	RS3A_CHAGB	No assigned EC number	0.6855	0.9346	0.8945	N/A	no
Q42262	RS3A2_ARATH	No assigned EC number	0.8484	0.9428	0.8816	yes	no
B2VUE4	RS3A_PYRTR	No assigned EC number	0.7030	0.9306	0.8941	N/A	no
B0Y356	RS3A_ASPFC	No assigned EC number	0.6839	0.9428	0.9023	N/A	no
Q764D2	RS3A_LENED	No assigned EC number	0.7229	0.9428	0.9023	N/A	no
Q9MBB3	RS3A_DAUCA	No assigned EC number	0.8528	0.9428	0.8850	N/A	no
Q5AS60	RS3A_EMENI	No assigned EC number	0.6623	0.9428	0.9023	yes	no
Q0CA00	RS3A_ASPTN	No assigned EC number	0.6753	0.9428	0.9023	N/A	no
A8QD49	RS3A_MALGO	No assigned EC number	0.6190	0.9387	0.8846	N/A	no
P40910	RS3A_CANAL	No assigned EC number	0.6506	0.9346	0.8945	N/A	no
Q871N9	RS3A_NEUCR	No assigned EC number	0.6839	0.9428	0.9023	N/A	no
B6HFE0	RS3A_PENCW	No assigned EC number	0.6593	0.9346	0.8945	yes	no
B0CY45	RS3A_LACBS	No assigned EC number	0.6926	0.9428	0.9023	N/A	no
Q4KTD9	RS3A_SUBDO	No assigned EC number	0.6753	0.9387	0.9126	N/A	no
A2R9S1	RS3A_ASPNC	No assigned EC number	0.6753	0.9428	0.9023	yes	no
Q5CP76	RS3A_CRYHO	No assigned EC number	0.6130	0.9387	0.8778	N/A	no
P49397	RS3A_ORYSJ	No assigned EC number	0.8614	0.9428	0.8816	yes	no
P49396	RS3A_BRARA	No assigned EC number	0.8362	0.9428	0.8816	N/A	no
B8NSD4	RS3A_ASPFN	No assigned EC number	0.6796	0.9428	0.9023	N/A	no
Q9XEG7	RS3A_TORRU	No assigned EC number	0.7155	0.9306	0.9193	N/A	no
Q4WTM9	RS3A_ASPFU	No assigned EC number	0.6839	0.9428	0.9023	yes	no
Q8GTE3	RS3A_CICAR	No assigned EC number	0.8744	0.9428	0.8850	N/A	no
B8PIG4	RS3A_POSPM	No assigned EC number	0.7099	0.9428	0.9023	N/A	no
A7E4H3	RS3A_SCLS1	No assigned EC number	0.6666	0.9428	0.9023	N/A	no
O94438	RS3A2_SCHPO	No assigned EC number	0.6363	0.9428	0.9166	yes	no
P33444	RS3A_CATRO	No assigned EC number	0.8744	0.9428	0.8850	N/A	no
Q2UTI8	RS3A_ASPOR	No assigned EC number	0.6796	0.9428	0.9023	yes	no
B9W790	RS3A_CANDC	No assigned EC number	0.6506	0.9346	0.8945	yes	no
P0CC07	RS3A_CANAW	No assigned EC number	0.6506	0.9346	0.8945	N/A	no
P49198	RS3A_HELAN	No assigned EC number	0.8701	0.9428	0.8884	N/A	no
C7YTD6	RS3A_NECH7	No assigned EC number	0.6812	0.9346	0.8945	N/A	no
A8HS48	RS3A_CHLRE	No assigned EC number	0.7835	0.9428	0.8918	N/A	no
A4R1I7	RS3A_MAGO7	No assigned EC number	0.6812	0.9346	0.8945	N/A	no
A4SAD2	RS3A_OSTLU	No assigned EC number	0.7532	0.9428	0.8884	yes	no
B8MBY6	RS3A_TALSN	No assigned EC number	0.6666	0.9428	0.9023	N/A	no
A7Q5X9	RS3A2_VITVI	No assigned EC number	0.8879	0.9469	0.9914	yes	no
A8NX92	RS3A_COPC7	No assigned EC number	0.6883	0.9428	0.9023	N/A	no
B6QGS2	RS3A_PENMQ	No assigned EC number	0.6666	0.9428	0.9023	N/A	no
A1C4N6	RS3A_ASPCL	No assigned EC number	0.6796	0.9428	0.9023	N/A	no
Q285L8	RS3A_TOBAC	No assigned EC number	0.8528	0.9428	0.8850	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam01015	195	pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family	2e-93
COG1890	214	COG1890, RPS1A, Ribosomal protein S3AE [Translatio	3e-71
PRK04057	203	PRK04057, PRK04057, 30S ribosomal protein S3Ae; Va	7e-39

>gnl|CDD|216245 pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family

 Score =  272 bits (697), Expect = 2e-93
 Identities = 105/211 (49%), Positives = 130/211 (61%), Gaps = 16/211 (7%)

Query: 12  GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLG 71
             K GKKK  DP+ +K+WYD+KAP+ F  R +GKT            E LK RV EVSL 
Sbjct: 1   AGKKGKKKVVDPWKRKEWYDVKAPAMFGSREIGKTPAND-------PEKLKGRVVEVSLA 53

Query: 72  DLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTD 131
           DL  +   + RK++ + EDVQG N LTNF G + T D LRSLVR+W + IEA VDVKT D
Sbjct: 54  DLTGDYSKSNRKLKFKIEDVQGDNALTNFHGHELTRDYLRSLVRRWTSKIEAIVDVKTKD 113

Query: 132 NYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAE 191
            Y LR+F I FTK+          AQ SQ R IR+KM EI+  +A+  D K  V+K I  
Sbjct: 114 GYLLRVFVIAFTKK---------RAQTSQKRAIRKKMTEIITKEASELDFKEFVQKLIPG 164

Query: 192 IIGREIEKATLSIYPLQNVFIRKVKILKAPK 222
            I ++IEKA   IYPL+ V IRKVK+LK PK
Sbjct: 165 SIAKDIEKAAKKIYPLRRVEIRKVKVLKRPK 195

Length = 195

>gnl|CDD|224802 COG1890, RPS1A, Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

 Score =  216 bits (553), Expect = 3e-71
 Identities = 88/222 (39%), Positives = 121/222 (54%), Gaps = 17/222 (7%)

Query: 10  SKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVS 69
             GKKG +KK  D + +K WY IKAP  F    VGKT            + L  RV EV+
Sbjct: 1   MAGKKG-QKKVRDKWKEKKWYTIKAPPYFGGVEVGKTPAND-------PDKLIGRVVEVT 52

Query: 70  LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKT 129
           L DL  +   ++RK++ R +DV+G   LT F G + T D +RSLVR+  + I+A VDVKT
Sbjct: 53  LADLTGDFSKSHRKLKFRIDDVEGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIVDVKT 112

Query: 130 TDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFI 189
            D Y LR+  + FT+R          A+ SQ R IR+ M EI+  +A+    +  V++ I
Sbjct: 113 KDGYVLRVKAMAFTRR---------RAKTSQKRAIRKIMFEIIEEKASELTFEEFVQELI 163

Query: 190 AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
              I  EIE+A   IYPL+ V IRK K+LK PK    +   +
Sbjct: 164 PGRIAAEIEEAAKKIYPLRKVEIRKSKVLKEPKEAEPEQAVL 205

Length = 214

>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated

 Score =  133 bits (337), Expect = 7e-39
 Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 16/204 (7%)

Query: 19  KAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEE 78
           +  D + +K WY + AP  F    +G+T            E L  RV E +LGDL  +  
Sbjct: 1   RVKDKWKEKKWYTVYAPEFFGGVEIGETPADD-------PEKLIGRVVETTLGDLTGDFS 53

Query: 79  HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMF 138
               K+  + ++V+G    T F G + T D LRSLVR+  + I+A VDV T D Y +R+ 
Sbjct: 54  KQNVKLYFKIDNVEGDKAYTRFIGHELTRDYLRSLVRRRTSKIDAIVDVTTKDGYKVRVK 113

Query: 139 CIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIE 198
            +  T       KR   A+ SQ   IR+ M EI+  +A+    +  V++ +   +  EI 
Sbjct: 114 PVALT------TKR---ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIY 164

Query: 199 KATLSIYPLQNVFIRKVKILKAPK 222
           K    IYPL+ V IRK K+L  P+
Sbjct: 165 KEAKKIYPLRRVEIRKSKVLARPE 188

Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
KOG1628	249	consensus 40S ribosomal protein S3A [Translation,	100.0
PF01015	194	Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: I	100.0
PRK04057	203	30S ribosomal protein S3Ae; Validated	100.0
COG1890	214	RPS1A Ribosomal protein S3AE [Translation, ribosom	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	84.74

>KOG1628 consensus 40S ribosomal protein S3A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-87  Score=593.54  Aligned_cols=233  Identities=68%  Similarity=1.019  Sum_probs=229.5

Q ss_pred             ccCCCccccCCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhce
Q 025947            2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAY   81 (245)
Q Consensus         2 ~~gk~k~~~kgkkg~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~~   81 (245)
                      |+|||+++++||+|+++|++|||++|+||+++||.+|+.+++|+|+++||+|+++++++ +||+|||+||||+| ++.++
T Consensus         1 avgkn~~~~~~K~g~kkk~~~p~s~k~~~d~ka~~~~~~~~~~~~l~~~t~g~k~~~~~-~gr~~~v~~~dl~n-~e~af   78 (249)
T KOG1628|consen    1 AVGKNKRLSGGKKGAKKKAVDPFSRKDWYDVKAPPMFPARNVGKTLVNRTQGTKGASDG-KGRVVEVSLADLQN-EEVAF   78 (249)
T ss_pred             CCccccccccCccCCCCCCCCCcccccccccCCcccccCCChhheeccccccccccccC-CCceeeechhhccc-hhhhh
Confidence            79999999988999999999999999999999999999999999999999999999999 99999999999994 48999


Q ss_pred             eEEEEEEeeeCCCeeeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhh
Q 025947           82 RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQI  161 (245)
Q Consensus        82 ~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~  161 (245)
                      |||+|++++|+|+||+|+||||+||+|++|||++||||+|||+++|+|.|||+|||||++||++++||.++||||++||+
T Consensus        79 rK~kli~edvqgkN~lt~f~GmdlT~dK~~smvkKwqt~ieA~v~vkT~dgy~Lrlf~i~ftkk~~nqv~ktsyaq~~qv  158 (249)
T KOG1628|consen   79 RKFKLIAEDVQGKNCLTNFHGMDLTRDKLVSMVKKWQTLIEAVVDVKTTDGYLLRLFCIGFTKKLVNQVKKTSYAQHGQV  158 (249)
T ss_pred             heeeeeeccccCcccceeccCcchhhhhhhhhhhhhhheeeeeEEeecccCceEEeeehHHHHHhhcccCCceeeecchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCccchhhhhhcCCcce
Q 025947          162 RQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVFL  236 (245)
Q Consensus       162 ~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~~  236 (245)
                      ++||++|+|||+++++++||+|+|++||||+|+++||++|++|||||+|+|||||+|+.|+|||||||||||||-
T Consensus       159 ~~irk~m~ei~~~evs~~Dlk~vvnKLipd~igKdiEka~~~iyPL~~v~vRKVK~lK~pkfelGkl~eLHGegs  233 (249)
T KOG1628|consen  159 RQIRKEMMEIMTQEVSTSDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS  233 (249)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHhchhhhhhHHHhhccccccchhheeeeeeccccccchhhHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999873

>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.7e-82  Score=550.36  Aligned_cols=194  Identities=62%  Similarity=0.955  Sum_probs=166.3

Q ss_pred             CcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhceeEEEEEEeee
Q 025947           12 GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDV   91 (245)
Q Consensus        12 gkkg~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~~~K~kf~i~~V   91 (245)
                      ||||+ +|++|+|++|+||+|+||++|+.++||+|||+       .||+|+|||||+|||||+||++++|+||+|+|++|
T Consensus         1 ~kK~~-kk~~d~~~~K~WY~V~AP~~F~~~~iG~T~~~-------~~~~l~gRv~Evsl~DL~~d~~~~~~K~~f~i~~V   72 (194)
T PF01015_consen    1 GKKGK-KKVVDPWKKKEWYDVKAPSMFGNRNIGKTPAN-------KPEKLKGRVFEVSLADLTNDFSKAYRKFKFKIEDV   72 (194)
T ss_dssp             ----S----S-TTTTEEEEEEE--TTSSSSEECEEEEE--------CCCCCC-EEEEECHCCCSTTTTSS-EEEEEEEEE
T ss_pred             CCCCc-ccccCCCccceeEEEECCHHhCcceeeEEEcC-------CcccccCeEEEEEHHHhcCchhhhcEEEEEEEEee
Confidence            57788 88999999999999999999999999999999       58999999999999999999999999999999999


Q ss_pred             CCCeeeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHH
Q 025947           92 QGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREI  171 (245)
Q Consensus        92 ~G~~a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~ei  171 (245)
                      +|++|+|+|||||||+||||||||||||+||+++||+|+|||+|||||+|||.++         |++||+++||++|.++
T Consensus        73 ~g~~a~T~F~G~elt~D~lrSlvrk~~s~Ie~~~dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk~m~~i  143 (194)
T PF01015_consen   73 QGNNALTNFHGMELTRDKLRSLVRKWQSRIEAIVDVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRKKMVEI  143 (194)
T ss_dssp             ETTEEEEEEEEEE--HHHHHHC--TTC-EEEEEEEEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEcceecchhhhhcceeecceEEEEEEEEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998         9999999999999999


Q ss_pred             HHHHHhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCc
Q 025947          172 MIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPK  222 (245)
Q Consensus       172 i~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk  222 (245)
                      |++++++++|+|||+++++|+|++||+++|++|||||+|||||||||+.|+
T Consensus       144 i~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~IyPl~~v~IrKvKvlk~Pk  194 (194)
T PF01015_consen  144 ITEEASELDLKELVKKLIPGSIGKEIEKACKKIYPLRNVEIRKVKVLKKPK  194 (194)
T ss_dssp             HHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT--EEEEEEEEEEEEE---
T ss_pred             HHHHhccCcHHHHHHHHccchHHHHHHHHhccccccceEEEEEEEEeccCC
Confidence            999999999999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.

>PRK04057 30S ribosomal protein S3Ae; Validated

Probab=100.00  E-value=3.3e-79  Score=534.81  Aligned_cols=192  Identities=34%  Similarity=0.533  Sum_probs=187.8

Q ss_pred             cccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhceeEEEEEEeeeCCCeeee
Q 025947           19 KAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLT   98 (245)
Q Consensus        19 k~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~~~K~kf~i~~V~G~~a~T   98 (245)
                      +++|+|++|+||+|+||++|+.+++|+||++       +||+|+|||+|+||+||+||++++|+||+|+|++|+|++|+|
T Consensus         1 ~~~D~w~~K~WY~V~AP~~F~~~~iG~T~a~-------~~~~l~GRv~EvsL~DL~~d~~~~~~K~~f~i~~V~G~~a~T   73 (203)
T PRK04057          1 RVKDKWKEKKWYTVYAPEFFGGVEIGETPAD-------DPEKLIGRVVETTLGDLTGDFSKQNVKLYFKIDNVEGDKAYT   73 (203)
T ss_pred             CCCCcccccceEEEECCcccCCceEEEEEcc-------ChhhcCCcEEEEEHHHhcCChhhceEEEEEEEEeeeCCEEEE
Confidence            3689999999999999999999999999997       999999999999999999999999999999999999999999


Q ss_pred             eeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHHHhh
Q 025947           99 NFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAAS  178 (245)
Q Consensus        99 ~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~~~~  178 (245)
                      +|||||||+||||||||||||+||+++||+|+|||.|||||+|||.++         |++||+++||++|.|+|.+++++
T Consensus        74 ~F~G~~lTrD~lrSlVrk~~S~Ie~~vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~  144 (203)
T PRK04057         74 RFIGHELTRDYLRSLVRRRTSKIDAIVDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASE  144 (203)
T ss_pred             EEeeeEecHHHHHhHhccCceeEEEEEEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998         99999999999999999999999


Q ss_pred             CCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCccchh
Q 025947          179 CDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLG  226 (245)
Q Consensus       179 ~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~  226 (245)
                      ++|+|||+++++|+|++||+++|++|||||+|+|||+|||+.|+....
T Consensus       145 ~~~~e~V~~~i~g~i~~eI~~~~k~IyPlr~veIrKvkvl~~p~~~~~  192 (203)
T PRK04057        145 LTFEEFVQEIVFGKLASEIYKEAKKIYPLRRVEIRKSKVLARPEEVEA  192 (203)
T ss_pred             CCHHHHHHHHccchHHHHHHHhhhhccCcceEEEEEEEEEecCccccc
Confidence            999999999999999999999999999999999999999999997543

>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.2e-77  Score=520.05  Aligned_cols=208  Identities=42%  Similarity=0.609  Sum_probs=202.5

Q ss_pred             CCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhceeEEEEEEee
Q 025947           11 KGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAED   90 (245)
Q Consensus        11 kgkkg~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~~~K~kf~i~~   90 (245)
                      +|+||.+| ++|+|+.|.||+|+||++|+..++|+||++       +|+.|+||++|+||+|||||++++|+|++|+|++
T Consensus         2 ~~~k~~~k-v~Dkwk~K~Wy~i~AP~~fg~~~vG~t~a~-------dp~~ligR~vEvtl~DLtgd~~~~~~K~~FrI~~   73 (214)
T COG1890           2 AGKKGQKK-VRDKWKEKKWYTIKAPPYFGGVEVGKTPAN-------DPDKLIGRVVEVTLADLTGDFSKSHRKLKFRIDD   73 (214)
T ss_pred             Cccccccc-ccCchhhceeEEEeCchhhCcccccccccc-------ChHHhhCceEEEEHHHhcCCcccceEEEEEEEee
Confidence            35666665 899999999999999999999999999999       8999999999999999999999999999999999


Q ss_pred             eCCCeeeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHH
Q 025947           91 VQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMRE  170 (245)
Q Consensus        91 V~G~~a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~e  170 (245)
                      |+|++|+|.|+|||||+||+|||||||+|+||+++||+|+|||.+|||++|||.+|         |++||+++||++|.|
T Consensus        74 v~G~~a~T~F~GheltrDyiRslVRR~~SrIdai~dVkTkDGy~~RV~~~~~T~~r---------a~tSqk~aIRk~M~e  144 (214)
T COG1890          74 VEGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIVDVKTKDGYVLRVKAMAFTRRR---------AKTSQKRAIRKIMFE  144 (214)
T ss_pred             ccCcEeeEEEeccchhHHHHHHHHhcccceeeeEEEEEecCCcEEEEEEEEEEehh---------cccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999         999999999999999


Q ss_pred             HHHHHHhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCccchhhhhhcCCcc
Q 025947          171 IMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVF  235 (245)
Q Consensus       171 ii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~  235 (245)
                      +|.+.+++++++|||++|++|.|+++|+++|++|||||+|||||+|||+.|+.+-....+.|+++
T Consensus       145 ii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkIyPLr~veIrK~kvl~~p~~~~~~~~~~~~~~  209 (214)
T COG1890         145 IIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYPLRKVEIRKSKVLKEPKEAEPEQAVLHGES  209 (214)
T ss_pred             HHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhcccchheEEEeeeeeccCcccccchhcccccc
Confidence            99999999999999999999999999999999999999999999999999999988999999876

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=84.74  E-value=6  Score=35.60  Aligned_cols=91  Identities=18%  Similarity=0.163  Sum_probs=64.2

Q ss_pred             EEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhcccc
Q 025947          125 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSI  204 (245)
Q Consensus       125 vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~I  204 (245)
                      .++.|+||..+.|-++++-+=......+-.|--......|+..+...|.+.+.+.+++|++..  -+.|+.+|....++.
T Consensus        46 ~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~--R~~I~~~i~~~l~~~  123 (262)
T cd03407          46 VETKTKDNVFVTVVGQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQ--KDEIAKAVEEELREA  123 (262)
T ss_pred             CceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccHHHHHhh--HHHHHHHHHHHHHHH
Confidence            456899999999888776654322212444554555679999999999999999999999964  356666666666665


Q ss_pred             cccccEEEEEEEe
Q 025947          205 YPLQNVFIRKVKI  217 (245)
Q Consensus       205 yPl~~V~IrKvKv  217 (245)
                      .--.-|.|..|.+
T Consensus       124 l~~~GI~V~~v~I  136 (262)
T cd03407         124 MSRYGFEIVATLI  136 (262)
T ss_pred             HHhcCcEEEEEEE
Confidence            4444667776654

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
3u5c_B	255	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-69
2xzm_4	265	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-49
3zey_0	256	High-resolution Cryo-electron Microscopy Structure		2e-43
3j20_A	198	Promiscuous Behavior Of Proteins In Archaeal Riboso		6e-20

>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 255

Iteration: 1
 Score =  257 bits (656), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 151/202 (74%)
Query: 28  DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLR 87
           +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RKI+LR
Sbjct: 28  EWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLR 87
Query: 88  AEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP 147
            ++VQGKN+LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  
Sbjct: 88  VDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQA 147
Query: 148 NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPL 207
           NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PL
Sbjct: 148 NQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPL 207
Query: 208 QNVFIRKVKILKAPKFDLGKLM 229
           QN+ +RKVK+LK PKFD+G LM
Sbjct: 208 QNIHVRKVKLLKQPKFDVGALM 229

>pdb|2XZM|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 265

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 137/208 (65%), Gaps = 4/208 (1%)
Query: 28  DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDL-HNEEEHAYRKIRL 86
           +WYD +AP  F  ++ GKTLVT++ G +IASE +K RV E +L DL  N  + A+RK++L
Sbjct: 30  EWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKL 89
Query: 87  RAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRL 146
             ++V G+N  T+F+G+D T D+L S++RKW TLIEA VD KT D Y +R+F + FTK+ 
Sbjct: 90  VIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKT 149
Query: 147 P---NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLS 203
                    TCYA++SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +
Sbjct: 150 SAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKN 209
Query: 204 IYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           I+PLQN+ IRKVK+LK PK D  K+ E+
Sbjct: 210 IFPLQNITIRKVKVLKRPKLDATKIAEL 237

>pdb|3ZEY|0 Chain 0, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 256

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 129/204 (63%), Gaps = 2/204 (0%)
Query: 28  DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLH--NEEEHAYRKIR 85
           +WYD+ AP  F VR   KT+  +TQGTKIA++ L+ RV+E +L DL+    E+ AYRK++
Sbjct: 28  EWYDVVAPKNFEVRQFAKTICNKTQGTKIAADFLRGRVYEGNLADLNKTQNEDDAYRKVK 87
Query: 86  LRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKR 145
              ++VQG+N+LT F GMD T+D++  L+RKW T IEA V+ KT D Y LR+F I FTK+
Sbjct: 88  FTVQEVQGRNLLTQFHGMDMTSDRVYYLLRKWCTTIEATVEAKTADGYGLRLFLIAFTKK 147
Query: 146 LPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIY 205
             NQ+ + CYA+   ++ +R +   I+  + A  D+   V      I+   + K    I 
Sbjct: 148 QENQLSKNCYAKTRLVKWVRMRATNIIRRRLAKLDINDAVSLLTRNILRDRLAKRCNPII 207
Query: 206 PLQNVFIRKVKILKAPKFDLGKLM 229
           PL+++ IRKVK+++ PKFD   L+
Sbjct: 208 PLRDLRIRKVKVIRTPKFDAQALI 231

>pdb|3J20|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 198

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 16/194 (8%)
Query: 29  WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRA 88
           WY I AP  F    VG T            E + +RV EV+L D+  +   ++ K+  + 
Sbjct: 18  WYIIYAPDFFGGVEVGLTPAD-------DPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQV 70
Query: 89  EDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPN 148
            DV+G+N  T F GM      +RSLVR+  T I+   ++ T D Y LR+  +    R   
Sbjct: 71  YDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR-- 128
Query: 149 QVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQ 208
                   Q SQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+
Sbjct: 129 -------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLR 181
Query: 209 NVFIRKVKILKAPK 222
              IRK+K+L+ P+
Sbjct: 182 KAEIRKIKVLEEPQ 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	1e-105
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	3e-96
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B Length = 255

 Score =  303 bits (776), Expect = e-105
 Identities = 141/231 (61%), Positives = 175/231 (75%)

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEG 60
           MAVGKNKR+SKGKKG KK+  DPF +K+W+DIKAPS F  RNVGKTLV ++ G K AS+ 
Sbjct: 1   MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDA 60

Query: 61  LKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTL 120
           LK RV EV L DL   E+H++RKI+LR ++VQGKN+LTNF GMDFTTDKLRS+VRKW TL
Sbjct: 61  LKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTL 120

Query: 121 IEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCD 180
           IEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     
Sbjct: 121 IEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGST 180

Query: 181 LKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +
Sbjct: 181 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMAL 231

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4 Length = 265

 Score =  281 bits (720), Expect = 3e-96
 Identities = 105/237 (44%), Positives = 152/237 (64%), Gaps = 6/237 (2%)

Query: 1   MAVGKNKRISKGKK--GGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIAS 58
           M  GKN  +  G    G KK+  DP ++K+WYD +AP  F  ++ GKTLVT++ G +IAS
Sbjct: 1   MTQGKNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIAS 60

Query: 59  EGLKHRVFEVSLGDLHN-EEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW 117
           E +K RV E +L DL +   + A+RK++L  ++V G+N  T+F+G+D T D+L S++RKW
Sbjct: 61  EEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKW 120

Query: 118 HTLIEAYVDVKTTDNYTLRMFCIGFTKRLP---NQVKRTCYAQASQIRQIRRKMREIMIA 174
            TLIEA VD KT D Y +R+F + FTK+          TCYA++SQ+R IRRK+   +  
Sbjct: 121 QTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITN 180

Query: 175 QAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEV 231
           +AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E+
Sbjct: 181 EAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAEL 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 90/299 (30%)

Query: 2   AVGKNKRISKGKKG-GKKKAADPFAKKDWYDIKA---PS--C----FRVRNVGKTL---V 48
           A   +  +          +      K  + D +    P         R+  + +++   +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 49  TRTQGTK-IASEGLKHRVFEVSLGDLH-NEEEHAYRKIRLRAEDVQ-GKNVLTNFWG--- 102
                 K +  + L   + E SL  L   E    + ++ +          +L+  W    
Sbjct: 342 ATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 103 ----MDFTTDKL--RSLVRKW-------------------------H-TLIEAYVDVKT- 129
               M    +KL   SLV K                          H ++++ Y   KT 
Sbjct: 401 KSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 130 ---------TDNYTLRMFC--IGFTKRLPNQVKRTCYAQASQI----RQIRRKMREIMIA 174
                     D Y    F   IG   +     +R        +    R + +K+R    A
Sbjct: 460 DSDDLIPPYLDQY----FYSHIGHHLKNIEHPER--MTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 175 QAASCDLKGLV------EKFIAEIIGREIEKATLSIYPLQNVFIRKV--KILKAPKFDL 225
             AS  +   +      + +I +   +        +  + + F+ K+   ++ +   DL
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERL----VNAILD-FLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 72/217 (33%)

Query: 31  DIKAPSCFRVRNVG-KTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAE 89
           +++    +   N+  K L+T T+  ++           +SL                   
Sbjct: 252 NVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHS--------------- 295

Query: 90  DVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQ 149
                           T D+++SL+ K+       +D +  D              LP +
Sbjct: 296 -----------MT--LTPDEVKSLLLKY-------LDCRPQD--------------LPRE 321

Query: 150 VKRTCYAQAS--QIRQIRRKMREIMIA-----QAASCD-LKGLVEKFIAEIIGREIEKA- 200
           V  T     +  ++  I   +R+  +A     +  +CD L  ++E  +  +   E  K  
Sbjct: 322 VLTT-----NPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 201 -TLSIYPLQNVFI-RKV-KIL--KAPKFDLGKLMEVC 232
             LS++P  +  I   +  ++     K D+  ++   
Sbjct: 376 DRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	100.0
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	100.0
3j20_A	198	30S ribosomal protein S3AE; archaea, archaeal, KIN	100.0
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	85.53

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B

Probab=100.00  E-value=4.3e-108  Score=734.92  Aligned_cols=235  Identities=60%  Similarity=0.955  Sum_probs=213.7

Q ss_pred             CccCCCccccCCcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhc
Q 025947            1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHA   80 (245)
Q Consensus         1 m~~gk~k~~~kgkkg~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~   80 (245)
                      |||||||+++|||||+|||++|||++|+||+|+||++|+.++||+||||||||++++||+|+|||||+|||||+||++++
T Consensus         1 ma~gknk~l~kgkkg~kkk~~D~f~~K~WY~VkAP~~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~~   80 (255)
T 3u5c_B            1 MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHS   80 (255)
T ss_dssp             -------------------CCCTTTTCCEEEEECCSSSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTTS
T ss_pred             CCccCCCcccccccCCcccccCCcccceeEEEeCccccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeeeCCCeeeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhh
Q 025947           81 YRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQ  160 (245)
Q Consensus        81 ~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ  160 (245)
                      |+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++|+||.+|||||++||
T Consensus        81 ~rK~kl~i~~V~G~~~lT~F~GmdlT~DklrSlVrKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQ  160 (255)
T 3u5c_B           81 FRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSH  160 (255)
T ss_dssp             SCEEEEECCCEETTEECCEEEEECCCHHHHHHHCCTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHH
T ss_pred             ceEEEEEEEeecCCEEEEEEcceeechhhhhhhccccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCccchhhhhhcCCcc
Q 025947          161 IRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPVF  235 (245)
Q Consensus       161 ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~~  235 (245)
                      +++||++|+|+|++++++++|+|||++|++|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||||
T Consensus       161 i~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~IyPL~~V~IrKvKvLk~Pk~d~~kl~e~hg~~  235 (255)
T 3u5c_B          161 IRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEG  235 (255)
T ss_dssp             HHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTCCCEEEECCCEEEEECCCCCHHHHGGGCC--
T ss_pred             HHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccccccceEEEEEEEEeecCcccHhHHHhhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4

Probab=100.00  E-value=3.2e-105  Score=717.80  Aligned_cols=236  Identities=45%  Similarity=0.784  Sum_probs=210.4

Q ss_pred             CccCCCcccc-C-CcCCCcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCch-
Q 025947            1 MAVGKNKRIS-K-GKKGGKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEE-   77 (245)
Q Consensus         1 m~~gk~k~~~-k-gkkg~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~-   77 (245)
                      |||||||+++ + ||||+|||++|||++|+||+|+||++|+.++||+||||||||++++||+|+|||||||||||+||+ 
T Consensus         1 mavgknk~l~~k~gkkg~kkk~~Dpf~~K~WY~VkAP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~   80 (265)
T 2xzm_4            1 MTQGKNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSN   80 (265)
T ss_dssp             --------------CCCSCCCCSCTTSSEEEEEEECCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTT
T ss_pred             CCccCCCccccccCcccccccccCCCcccceEEEECCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChh
Confidence            9999999996 5 799999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             hhceeEEEEEEeeeCCCeeeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecC---Ccccccc
Q 025947           78 EHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP---NQVKRTC  154 (245)
Q Consensus        78 ~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~---~q~kkt~  154 (245)
                      +++|+||+|+|++|+|++|+|+|||||||+||||||||||||+|||++||+|+|||+|||||||||++|+   ||.+|||
T Consensus        81 ~~~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSlVrKw~s~Iea~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~  160 (265)
T 2xzm_4           81 DKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTC  160 (265)
T ss_dssp             TSCCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHSCCTTBCEEEEEEEEEETTTEEEEEEEEEEECCCSSCCSCSSCCB
T ss_pred             hhcceEEEEEEEeecCCEEEEEEeeeeccHHHhhhhhcccceeEEEEEEEEeCCCcEEEEEEEEEEecccccccccceee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCccchhhhhhcCCc
Q 025947          155 YAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVCPV  234 (245)
Q Consensus       155 Ya~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~~~~kl~e~~~~  234 (245)
                      ||++||+++||++|+|+|++++++++|+|||+++++|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||+
T Consensus       161 Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k~IyPL~~V~IrKvKvLk~Pk~~~~~l~e~hg~  240 (265)
T 2xzm_4          161 YAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSH  240 (265)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHTTTCCEEEEEEEEEEEEECCCC-----------
T ss_pred             eccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhhhccccceEEEEEEEEEecCchHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ce
Q 025947          235 FL  236 (245)
Q Consensus       235 ~~  236 (245)
                      |.
T Consensus       241 ~~  242 (265)
T 2xzm_4          241 EK  242 (265)
T ss_dssp             --
T ss_pred             cc
Confidence            74

>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=5.9e-85  Score=567.77  Aligned_cols=192  Identities=34%  Similarity=0.524  Sum_probs=186.1

Q ss_pred             CcccccCCCCCcceEEEeCCCCCCcceeeeeeeecccCcccCccCCCCeEEEEeccCCCCchhhceeEEEEEEeeeCCCe
Q 025947           16 GKKKAADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKN   95 (245)
Q Consensus        16 ~kkk~~D~~~kK~WY~V~AP~~F~~~~iG~T~v~rt~g~k~~~~~l~GRv~EvsLaDL~~d~~~~~~K~kf~i~~V~G~~   95 (245)
                      ..+|++|||++|+||+|+||++|+.+++|+||||       .||+|+|||||+|||||+||++++|+||+|++++|+|++
T Consensus         5 ~~~k~~D~~~~K~WY~V~AP~~F~~~~iG~T~~~-------~~~~l~GRv~EvsL~DL~~d~~~~~~K~kf~i~~V~G~~   77 (198)
T 3j20_A            5 RATTTRDKWKLKQWYIIYAPDFFGGVEVGLTPAD-------DPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQN   77 (198)
T ss_dssp             ----CCCCSSSEEEEEEECCSSSSCCCCCEEEEE-------SSSCCSSCEEEECCCSSTTHHHHHCCCEEEEEEEESSSE
T ss_pred             ccccccCCCccceeEEEECchhcCCceeEEEEcc-------CcccccCeEEEEEHHHhcCChhhheEEEEEEEEeccCCE
Confidence            3458899999999999999999999999999999       589999999999999999999999999999999999999


Q ss_pred             eeeeeecccccchhhhhhccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHH
Q 025947           96 VLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQ  175 (245)
Q Consensus        96 a~T~F~GmelT~DklrSlVrK~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~  175 (245)
                      |+|+|||||||+||||||||||||+|||++||+|+|||+|||||+|||+++         |++||+++||++|.|+|+++
T Consensus        78 a~T~F~G~~lT~DklrSlVrk~~s~Iea~vdVkT~DGy~lRvf~i~fT~kr---------a~~sQ~~~IRk~m~eii~~~  148 (198)
T 3j20_A           78 AYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKK  148 (198)
T ss_dssp             EEEEEEEECCCHHHHHHHCCSSSCEEEEEEEEECTTSCEEEEEEEEEECSS---------CCCTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcceeechhhhhhheecceeEEEEEEEEEecCCCEEEEEEEEEEecc---------ccchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997         99999999999999999999


Q ss_pred             HhhCCHHHHHHHHccchHHHHHHHhcccccccccEEEEEEEeeecCcc
Q 025947          176 AASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKF  223 (245)
Q Consensus       176 ~~~~~l~e~V~~li~~~i~keI~k~~k~IyPl~~V~IrKvKvlk~Pk~  223 (245)
                      +++++|+|||+++++|+|++||+++|++|||||+|||||||||+.|+|
T Consensus       149 ~~~~~l~e~V~~li~~~i~~eI~k~~k~IyPl~~V~IrKvKvlk~Pk~  196 (198)
T 3j20_A          149 AEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQV  196 (198)
T ss_dssp             HHHSCHHHHHHHHHSHHHHHHHHHHHHHHSCEEEEEEEEEEEEECSCS
T ss_pred             hccCCHHHHHHHHcCChHHHHHHHhhCcccccceEEEEEEEEeeccCc
Confidence            999999999999999999999999999999999999999999999997

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=85.53  E-value=7.9  Score=31.57  Aligned_cols=90  Identities=10%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             EEEEEeCCCcEEEEEEEEEeeecCCcccccchhhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHccchHHHHHHHhccc
Q 025947          124 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLS  203 (245)
Q Consensus       124 ~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~keI~k~~k~  203 (245)
                      ..++.|+||..|+|-+++.-+=. + ..+-.|.-..-..+++......+.+.+...+++|++..  -+.|+.+|......
T Consensus        20 ~~~v~TkD~~~V~v~~~v~yrI~-d-p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~--R~~i~~~i~~~l~~   95 (188)
T 3bk6_A           20 VQETITKDNVPVRVNAVVYFRVV-D-PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSE--RDKLNMQLQRIIDE   95 (188)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEES-C-HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHC--HHHHHHHHHHHHHH
T ss_pred             CceeEcCCCCEEEEEEEEEEEEC-C-HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhh--HHHHHHHHHHHHHH
Confidence            45899999999999888655432 1 22223332233456788888999999999999999863  34444444444443


Q ss_pred             ccccccEEEEEEEe
Q 025947          204 IYPLQNVFIRKVKI  217 (245)
Q Consensus       204 IyPl~~V~IrKvKv  217 (245)
                      ..--.-++|..|.+
T Consensus        96 ~~~~~GI~v~~v~I  109 (188)
T 3bk6_A           96 ATDPWGIKVTAVEI  109 (188)
T ss_dssp             HTGGGTEEEEEEEE
T ss_pred             HHHhcCeEEEEEEE
Confidence            33223455555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00