Citrus Sinensis ID: 025965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccHHccccEEcccHHHHHHHHHHHHHHccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MQQLCDILLeglpahqqgkvqlrSTTTTFLVVNTLMLTTPFKALAETceadnsffnmPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpkKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISeregeysgsteaYGAIADCYTELGDLERAARFYDKYISRLESD
Flexible Loop (DISEMBL)
MQQLCDILLEGLpahqqgkvqlrSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpKKEELLSRLKtgknflrnQDLEKAFTEFKAALELAqnvkdpieekkaarglgaslqrqgKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Low Complexity Region (SEG)
MQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered region (IsUnstruct)
***LCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALR****I**************************************NFLRNQDLEKAFTEFKAALELA*************************YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI******
Disordered Region (DISOPRED)
******I*LEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPED***VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE**
Disordered Region (DISEMBL)
MQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered Region (DISPRO)
*QQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRxxxxxxxxxxxxxxxxxxxxxxxxESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRxxxxxxxxxxxxxxxxxxxxxKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q940U6	316	Protein FLUORESCENT IN BL	no	no	0.934	0.724	0.747	3e-97
Q96AY4	2481	Tetratricopeptide repeat	yes	no	0.363	0.035	0.340	2e-08
Q80XJ3	1691	Tetratricopeptide repeat	yes	no	0.363	0.052	0.340	2e-08

>sp|Q940U6|FLU_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1

 Score =  354 bits (909), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/230 (74%), Positives = 202/230 (87%), Gaps = 1/230 (0%)

Query: 17  QGKVQLRSTTTTFLVVNTLMLTTPFKALA-ETCEADNSFFNMPLLLFVALIGATVGGLLA 75
           +G  +L+      L+ N+L + TP +ALA E CE ++S F+MP+LL VALIGATVGGLLA
Sbjct: 87  EGIGRLKLPVMAVLLTNSLQMATPLEALAAEICEPESSMFSMPILLLVALIGATVGGLLA 146

Query: 76  RQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSR 135
           RQR+GELQR+NEQLRQINAALRRQAKIESYAPSLSYAPVG+RIP+ E+IV+PKK+EL+S+
Sbjct: 147 RQRKGELQRLNEQLRQINAALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISK 206

Query: 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
           LKTGK FLRNQ+ EKA+TEFK ALELAQ++KDP EEKKAARGLGASLQRQGKYREAI+YH
Sbjct: 207 LKTGKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYH 266

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           SMVL IS+RE E SG TEAYGAIADCYTELGDLE+A +FYD YI+RLE+D
Sbjct: 267 SMVLAISKRESEDSGITEAYGAIADCYTELGDLEKAGKFYDTYIARLETD 316

Negative regulator of tetrapyrrole biosynthesis (including chlorophyll) in chloroplasts, probably via HEMA1 repression. Inhibits especially the magnesium ion Mg(2+) branch of tetrapyrrole biosynthesis, but independently of heme.
Arabidopsis thaliana (taxid: 3702)

>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 147  DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
            + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 972  NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETN 1031

Query: 207  EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
              +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 1032 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

Homo sapiens (taxid: 9606)

>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 207 NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETD 266

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 267 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
224119612	229	predicted protein [Populus trichocarpa]	0.934	1.0	0.834	1e-108
255576615	332	FLU, putative [Ricinus communis] gi|2235	0.938	0.692	0.817	1e-106
297742973	332	unnamed protein product [Vitis vinifera]	0.967	0.713	0.802	1e-104
147797982	232	hypothetical protein VITISV_027349 [Viti	0.930	0.982	0.815	1e-103
449453383	297	PREDICTED: protein FLUORESCENT IN BLUE L	0.934	0.771	0.786	1e-102
388506112	300	unknown [Lotus japonicus]	0.922	0.753	0.779	3e-99
357514129	300	Tetratricopeptide repeat protein [Medica	0.910	0.743	0.785	4e-99
388522423	300	unknown [Medicago truncatula]	0.910	0.743	0.785	8e-99
358248692	297	uncharacterized protein LOC100818487 [Gl	0.922	0.760	0.784	3e-97
42572429	232	flourescent in blue light protein [Arabi	0.934	0.987	0.752	3e-96

>gi|224119612|ref|XP_002331203.1| predicted protein [Populus trichocarpa] gi|222873324|gb|EEF10455.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/229 (83%), Positives = 211/229 (92%)

Query: 17  QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR 76
           QG +QLRS+   FLV N LM TTPF+ALAETCEAD+S FNMPLLLFVAL+GATVGGLLAR
Sbjct: 1   QGNMQLRSSAMAFLVTNALMWTTPFEALAETCEADSSIFNMPLLLFVALVGATVGGLLAR 60

Query: 77  QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRL 136
           QR+GELQR+NEQLRQINAALRRQAKIESYAP+LSYAPVGSRI E EVIVDP+KE+L+SRL
Sbjct: 61  QRKGELQRLNEQLRQINAALRRQAKIESYAPTLSYAPVGSRILESEVIVDPRKEDLISRL 120

Query: 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 196
           K GKNFLRNQD EKAF EFK+ALELAQN+KDP EEKKA RGLGASLQRQGK +EAIKYHS
Sbjct: 121 KVGKNFLRNQDPEKAFVEFKSALELAQNLKDPTEEKKAVRGLGASLQRQGKLQEAIKYHS 180

Query: 197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           MVL IS+REGE SG+TEAYGAIADCYTELGDLE+AA+FYDKYI+RLE+D
Sbjct: 181 MVLAISKREGEESGNTEAYGAIADCYTELGDLEQAAKFYDKYIARLETD 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576615|ref|XP_002529198.1| FLU, putative [Ricinus communis] gi|223531376|gb|EEF33212.1| FLU, putative [Ricinus communis]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/230 (81%), Positives = 211/230 (91%)

Query: 16  QQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLA 75
            QG ++LRS+ T FLV N LM T PF+ALAET EADNSFFNMP+LLFVAL+GATVGGLLA
Sbjct: 103 HQGNLRLRSSVTAFLVTNALMWTAPFEALAETREADNSFFNMPVLLFVALVGATVGGLLA 162

Query: 76  RQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSR 135
           RQRRGELQ++NEQLRQINAALRRQAKIESYAP+LSYAPVGSRI E+EVIVDP+K+EL+SR
Sbjct: 163 RQRRGELQKLNEQLRQINAALRRQAKIESYAPTLSYAPVGSRIAENEVIVDPRKQELISR 222

Query: 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
           LK+GK FLRNQD EKAF EFKAALELA+++KDP+EEKKAARGLGASLQRQGKYREAI YH
Sbjct: 223 LKSGKKFLRNQDPEKAFEEFKAALELARSLKDPMEEKKAARGLGASLQRQGKYREAINYH 282

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           SMVL IS++EGE SG+TEAYGAIADCYTELGDLERA +FYD YI+RLE D
Sbjct: 283 SMVLAISQKEGEESGNTEAYGAIADCYTELGDLERAGKFYDNYIARLEKD 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742973|emb|CBI35840.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/238 (80%), Positives = 210/238 (88%), Gaps = 1/238 (0%)

Query: 8   LLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIG 67
           + E L AHQ G V  R   T   V N L+LT PF+ALAETCEA++SFFNMPLL FVALIG
Sbjct: 96  ITEHLSAHQ-GMVLFRFPATALAVTNALLLTIPFEALAETCEAESSFFNMPLLSFVALIG 154

Query: 68  ATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP 127
           ATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS+IPE+EVI+DP
Sbjct: 155 ATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSKIPENEVIIDP 214

Query: 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 187
           KKEEL+S LK GKNFLRNQ+ EKAF EFK ALELA+ +KDP EEKKAARGLGASLQRQGK
Sbjct: 215 KKEELISCLKAGKNFLRNQNPEKAFMEFKTALELARTLKDPTEEKKAARGLGASLQRQGK 274

Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           YR+AIKYHS VL+IS+REGE SG+TEAYGAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 275 YRDAIKYHSTVLEISKREGENSGNTEAYGAIADCYTELGDLERAGKFYDQYIARLEKD 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797982|emb|CAN65010.1| hypothetical protein VITISV_027349 [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/228 (81%), Positives = 204/228 (89%)

Query: 18  GKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQ 77
           G V  R   T   V N L+LT PF+ALAETCEA++SFFNMPLL FVALIGATVGGLLARQ
Sbjct: 5   GMVLFRFPATALAVTNALLLTIPFEALAETCEAESSFFNMPLLSFVALIGATVGGLLARQ 64

Query: 78  RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLK 137
           RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS+IPE+EVI+DPKKEEL+S LK
Sbjct: 65  RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSKIPENEVIIDPKKEELISCLK 124

Query: 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 197
            GKNFLRNQ+ EKAF EFK ALELA+ +KDP EEKKAARGLGASLQRQGKYR+AIKYHS 
Sbjct: 125 AGKNFLRNQNPEKAFMEFKTALELARTLKDPTEEKKAARGLGASLQRQGKYRDAIKYHST 184

Query: 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           VL+IS+REGE SG+TEAYGAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 185 VLEISKREGENSGNTEAYGAIADCYTELGDLERAGKFYDQYIARLEKD 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453383|ref|XP_004144437.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus] gi|449517661|ref|XP_004165863.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 204/229 (89%)

Query: 17  QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR 76
           QG ++ R     FL+ N    + P KA+AETCEA++S FNMP+LL VAL+GATVGGLLAR
Sbjct: 69  QGNIETRFPVMAFLLANVFTFSVPLKAMAETCEAESSAFNMPILLAVALVGATVGGLLAR 128

Query: 77  QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRL 136
           QRRGEL+R+NEQLRQINAALRRQAKIESYAP+LSYAPVG RI E+EVIVDP+KE+L+SRL
Sbjct: 129 QRRGELKRLNEQLRQINAALRRQAKIESYAPTLSYAPVGGRILENEVIVDPRKEDLISRL 188

Query: 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 196
           K+GKNFLRNQD EKAF EFK ALELAQ ++DPIEEKKAARGLGASLQRQGKYREAIKYHS
Sbjct: 189 KSGKNFLRNQDPEKAFVEFKTALELAQGLQDPIEEKKAARGLGASLQRQGKYREAIKYHS 248

Query: 197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           MVL ISEREGE SG+TEA+GAIADCYTELGDLE+AA FYDKYI+RLE+D
Sbjct: 249 MVLAISEREGEQSGNTEAFGAIADCYTELGDLEKAAYFYDKYIARLETD 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506112|gb|AFK41122.1| unknown [Lotus japonicus]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 177/227 (77%), Positives = 202/227 (88%), Gaps = 1/227 (0%)

Query: 20  VQLRSTTTTFLVVNTLMLTTPFKALAETCEA-DNSFFNMPLLLFVALIGATVGGLLARQR 78
           +  +  + TFL  N LM T P KALAETCEA  NSFFNMP+LL VALIGATVGGL+ARQR
Sbjct: 74  IHQKFPSLTFLASNILMFTMPSKALAETCEAAGNSFFNMPILLAVALIGATVGGLVARQR 133

Query: 79  RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKT 138
           +GELQRVNEQL QIN ALR+QAKIESYAPSLSYAP+G+RIP++E+IVDPKK+EL+S+LK+
Sbjct: 134 KGELQRVNEQLLQINTALRKQAKIESYAPSLSYAPIGARIPDNEIIVDPKKQELISKLKS 193

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           GKNFLRNQ L+KAFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMV
Sbjct: 194 GKNFLRNQQLDKAFTEFKIALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMV 253

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           L IS REGE SG++EA+GAIADCYTELGDLE+A  +YDKYI+ LE D
Sbjct: 254 LAISGREGEDSGNSEAFGAIADCYTELGDLEKAGEYYDKYIAMLEKD 300

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514129|ref|XP_003627353.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355521375|gb|AET01829.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 176/224 (78%), Positives = 201/224 (89%), Gaps = 1/224 (0%)

Query: 23  RSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGEL 82
           R  ++ FL  N LM + P KALAETCEADNS FNMP+LL VALIGATVGGL+ARQR+GEL
Sbjct: 77  RFHSSLFLASNFLMFSMPCKALAETCEADNSMFNMPILLAVALIGATVGGLVARQRKGEL 136

Query: 83  QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKN 141
           QR+NEQL QINAALR+QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKN
Sbjct: 137 QRLNEQLLQINAALRKQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKN 196

Query: 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
           FLRNQ  ++AFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL I
Sbjct: 197 FLRNQQPDRAFTEFKTALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSI 256

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           SEREGE SGSTEA+GAIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 257 SEREGEDSGSTEAFGAIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522423|gb|AFK49273.1| unknown [Medicago truncatula]

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 176/224 (78%), Positives = 200/224 (89%), Gaps = 1/224 (0%)

Query: 23  RSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGEL 82
           R  ++ FL  N LM + P KALAETCEADNS FNMP+LL VALIGATVGGL ARQR+GEL
Sbjct: 77  RFHSSLFLASNFLMFSMPCKALAETCEADNSMFNMPILLAVALIGATVGGLAARQRKGEL 136

Query: 83  QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKN 141
           QR+NEQL QINAALR+QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKN
Sbjct: 137 QRLNEQLLQINAALRKQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKN 196

Query: 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
           FLRNQ  ++AFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL I
Sbjct: 197 FLRNQQPDRAFTEFKTALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSI 256

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           SEREGE SGSTEA+GAIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 257 SEREGEDSGSTEAFGAIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248692|ref|NP_001239924.1| uncharacterized protein LOC100818487 [Glycine max] gi|255645496|gb|ACU23243.1| unknown [Glycine max]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/227 (78%), Positives = 199/227 (87%), Gaps = 1/227 (0%)

Query: 20  VQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRR 79
           +  R  +  F+  N LM + P  ALAETCEADNS FNMP+LL VALIGATVGGLLARQRR
Sbjct: 71  IHQRFPSLIFVASNVLMFSMPNTALAETCEADNSVFNMPILLAVALIGATVGGLLARQRR 130

Query: 80  GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKT 138
            ELQRVNEQL QINAALR+QAKIESYAPSLSYAP+G  RI ++E+IVDPKK+EL+S+LK 
Sbjct: 131 NELQRVNEQLIQINAALRKQAKIESYAPSLSYAPIGGGRILDNEIIVDPKKQELISKLKN 190

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           GKNFLRNQ  +KAFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMV
Sbjct: 191 GKNFLRNQQPDKAFTEFKNALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMV 250

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           L ISEREGE SGSTEA+GAIADCYTELG+LE+A +FYDKYI+RLE D
Sbjct: 251 LGISEREGEDSGSTEAFGAIADCYTELGELEKAGQFYDKYIARLEKD 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572429|ref|NP_974310.1| flourescent in blue light protein [Arabidopsis thaliana] gi|332641948|gb|AEE75469.1| flourescent in blue light protein [Arabidopsis thaliana]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 173/230 (75%), Positives = 202/230 (87%), Gaps = 1/230 (0%)

Query: 17  QGKVQLRSTTTTFLVVNTLMLTTPFKALA-ETCEADNSFFNMPLLLFVALIGATVGGLLA 75
           QG  +L+      L+ N+L + TP +ALA E CE ++S F+MP+LL VALIGATVGGLLA
Sbjct: 3   QGIGRLKLPVMAVLLTNSLQMATPLEALAAEICEPESSMFSMPILLLVALIGATVGGLLA 62

Query: 76  RQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSR 135
           RQR+GELQR+NEQLRQINAALRRQAKIESYAPSLSYAPVG+RIP+ E+IV+PKK+EL+S+
Sbjct: 63  RQRKGELQRLNEQLRQINAALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISK 122

Query: 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
           LKTGK FLRNQ+ EKA+TEFK ALELAQ++KDP EEKKAARGLGASLQRQGKYREAI+YH
Sbjct: 123 LKTGKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYH 182

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           SMVL IS+RE E SG TEAYGAIADCYTELGDLE+A +FYD YI+RLE+D
Sbjct: 183 SMVLAISKRESEDSGITEAYGAIADCYTELGDLEKAGKFYDTYIARLETD 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
MGI|MGI:2140873	1691	Ttc28 "tetratricopeptide repea	0.375	0.054	0.347	6.8e-07
UNIPROTKB|K7ZRV2	2481	TPRBK "TPR repeat-containing b	0.375	0.037	0.347	8e-07
UNIPROTKB|E1BS79	588	GPSM1 "Uncharacterized protein	0.424	0.176	0.292	0.00033
UNIPROTKB|E1BR28	663	GPSM2 "Uncharacterized protein	0.436	0.161	0.293	0.0005
TAIR|locus:2089353	475	AT3G16760 [Arabidopsis thalian	0.236	0.122	0.379	0.00053

MGI|MGI:2140873 Ttc28 "tetratricopeptide repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   209 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNP 268

Query:   209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:   269 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=ISO

GO:0007346 "regulation of mitotic cell cycle" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0097431 "mitotic spindle pole" evidence=ISO

GO:1990023 "mitotic spindle midzone" evidence=ISO

UNIPROTKB|K7ZRV2 TPRBK "TPR repeat-containing big gene cloned at Keio" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   974 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNP 1033

Query:   209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:  1034 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

GO:0007067 "mitosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0030496 "midbody" evidence=IEA

UNIPROTKB|E1BS79 GPSM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query:   134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK 193
             S L     FL   D+   +  +K  L+L++ +KD   E +A   LG +      Y +AI+
Sbjct:   227 SNLGNAHIFLGRFDISAEY--YKKTLQLSRQLKDQAVEAQACYSLGNTYTLLQDYEKAIE 284

Query:   194 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
             YH   L I++  G+  G   A  ++ + Y  LG  E+A  F  K++
Sbjct:   285 YHLKHLVIAQELGDRVGEGRACWSLGNAYVSLGSHEQALHFARKHL 330

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E1BR28 GPSM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
 Identities = 32/109 (29%), Positives = 54/109 (49%)

Query:   139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
             G  ++   + E A   +K  L+LA+ +KD   E +A   LG +      Y +AI YH   
Sbjct:   251 GNAYIFLGEFETASEYYKRTLQLARQLKDRAVEAQACYSLGNTYTLLQDYEKAIDYHLKH 310

Query:   199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 245
             L I++   +  G   A  ++ + YT LG+ ++A  F +++  ISR   D
Sbjct:   311 LVIAQELNDKIGEGRACWSLGNAYTALGNHDQAMHFAERHLEISREVGD 359

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

TAIR|locus:2089353 AT3G16760 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query:   174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 231
             +A+  G   QRQG+Y +AIK+ S  + + +R G+ +GS E     A CY E+G+ ++A
Sbjct:   355 SAKNKGIDNQRQGQYADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKA 412


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       245   0.00099  113 3  11 22  0.45    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  152 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.78u 0.12s 24.90t   Elapsed:  00:00:01
  Total cpu time:  24.78u 0.12s 24.90t   Elapsed:  00:00:01
  Start:  Sat May 11 10:19:52 2013   End:  Sat May 11 10:19:53 2013

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELG 226
             +   A   L   L+R G Y EA++     L+++   GE    T  A   +A  Y  LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 227 DLERAARFYDKYISRLES 244
           D + A  + +K ++  E+
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  + +  D ++A   ++ ALEL  +  D      A   L A+  + GKY EA++ +   
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNAD------AYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           L++         + +AY  +   Y +LG  E A   Y+K + 
Sbjct: 61  LELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 232
           +A   LG    + G Y EA++Y+   L++         + +AY  +A  Y +LG  E A 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEAL 54

Query: 233 RFYDKYIS 240
             Y+K + 
Sbjct: 55  EDYEKALE 62

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSM 197
                R  D ++A    + ALELA+ +  D  E  +A   L       G Y EA++Y   
Sbjct: 12  ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 198 VLQISER 204
            L + E 
Sbjct: 72  ALALREA 78

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.5
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.49
PRK15359	144	type III secretion system chaperone protein SscB;	99.44
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.44
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.39
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.35
KOG0553	304	consensus TPR repeat-containing protein [General f	99.35
PRK11189	296	lipoprotein NlpI; Provisional	99.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.28
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.27
KOG0553	304	consensus TPR repeat-containing protein [General f	99.25
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.24
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.24
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.24
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.19
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.18
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.17
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.14
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.13
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.11
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.09
KOG1126	638	consensus DNA-binding cell division cycle control	99.08
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.08
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.06
KOG1125	579	consensus TPR repeat-containing protein [General f	99.05
PRK11189	296	lipoprotein NlpI; Provisional	99.05
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.05
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.02
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.02
PRK12370	553	invasion protein regulator; Provisional	99.01
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.0
PRK10803	263	tol-pal system protein YbgF; Provisional	99.0
PRK12370	553	invasion protein regulator; Provisional	98.99
PRK15359	144	type III secretion system chaperone protein SscB;	98.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.92
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.87
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.87
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.87
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.86
PRK15331	165	chaperone protein SicA; Provisional	98.86
KOG1126	638	consensus DNA-binding cell division cycle control	98.86
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.84
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.83
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.74
PF12688	120	TPR_5: Tetratrico peptide repeat	98.73
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.73
KOG4234	271	consensus TPR repeat-containing protein [General f	98.73
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.7
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.7
KOG4555	175	consensus TPR repeat-containing protein [Function	98.68
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.61
KOG4234	271	consensus TPR repeat-containing protein [General f	98.6
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.58
PLN02789	320	farnesyltranstransferase	98.57
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.55
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.54
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.54
KOG2003	840	consensus TPR repeat-containing protein [General f	98.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.51
PF13512	142	TPR_18: Tetratricopeptide repeat	98.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.5
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.48
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.44
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.44
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.44
KOG1129	478	consensus TPR repeat-containing protein [General f	98.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.43
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.42
PRK04841	903	transcriptional regulator MalT; Provisional	98.42
KOG1586	288	consensus Protein required for fusion of vesicles	98.42
PF13371	73	TPR_9: Tetratricopeptide repeat	98.41
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.4
PF13371	73	TPR_9: Tetratricopeptide repeat	98.39
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.39
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.39
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.39
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.39
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.38
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.36
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.35
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.32
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.29
KOG1129	478	consensus TPR repeat-containing protein [General f	98.28
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.27
KOG1585	308	consensus Protein required for fusion of vesicles	98.26
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.26
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.26
KOG2003	840	consensus TPR repeat-containing protein [General f	98.25
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.25
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.25
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.24
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.24
PLN02789	320	farnesyltranstransferase	98.22
PRK14574	822	hmsH outer membrane protein; Provisional	98.22
KOG2076	895	consensus RNA polymerase III transcription factor	98.22
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.21
KOG2076	895	consensus RNA polymerase III transcription factor	98.21
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.2
KOG1125	579	consensus TPR repeat-containing protein [General f	98.2
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.19
PRK04841	903	transcriptional regulator MalT; Provisional	98.18
KOG1586	288	consensus Protein required for fusion of vesicles	98.18
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.17
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.14
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.13
PRK10803	263	tol-pal system protein YbgF; Provisional	98.12
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.09
KOG4555	175	consensus TPR repeat-containing protein [Function	98.05
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.04
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.01
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.98
PF12688	120	TPR_5: Tetratrico peptide repeat	97.97
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.93
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.87
PF13431	34	TPR_17: Tetratricopeptide repeat	97.84
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.82
PRK11906	458	transcriptional regulator; Provisional	97.81
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.78
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.78
PRK14574	822	hmsH outer membrane protein; Provisional	97.76
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.71
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.71
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.7
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.69
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.66
PF13428	44	TPR_14: Tetratricopeptide repeat	97.65
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.63
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.62
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.59
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.59
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.58
PF13512	142	TPR_18: Tetratricopeptide repeat	97.56
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.52
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.52
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.5
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.49
PF13431	34	TPR_17: Tetratricopeptide repeat	97.45
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.45
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.45
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.43
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.41
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.39
KOG1585	308	consensus Protein required for fusion of vesicles	97.38
PRK15331	165	chaperone protein SicA; Provisional	97.37
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.37
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.35
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.3
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.27
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.27
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.25
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.23
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.12
PF13428	44	TPR_14: Tetratricopeptide repeat	97.09
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.09
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.06
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.06
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.92
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.91
PRK11906	458	transcriptional regulator; Provisional	96.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.88
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.87
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.83
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.83
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.78
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.77
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.73
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.62
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.62
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.51
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.44
KOG2471	696	consensus TPR repeat-containing protein [General f	96.42
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.4
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.38
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.33
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.29
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.28
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.25
PLN03218	1060	maturation of RBCL 1; Provisional	96.2
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.15
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.1
PLN03218	1060	maturation of RBCL 1; Provisional	96.02
KOG2471	696	consensus TPR repeat-containing protein [General f	95.91
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.89
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.89
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.83
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.8
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.77
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.73
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	95.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.65
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.65
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.64
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.59
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.56
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.49
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.37
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.36
PRK10941	269	hypothetical protein; Provisional	95.18
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.17
PLN03077	857	Protein ECB2; Provisional	95.14
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.13
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.12
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.03
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.8
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.79
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.71
KOG0687	393	consensus 26S proteasome regulatory complex, subun	94.69
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.51
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.49
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.47
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.4
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.4
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.27
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.26
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.21
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.19
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.17
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.16
PLN03077	857	Protein ECB2; Provisional	94.15
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.98
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.94
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.89
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.82
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.8
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.69
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.59
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.48
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.44
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.32
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.32
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.24
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.68
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.65
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.47
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.43
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.4
KOG3364	149	consensus Membrane protein involved in organellar	92.33
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.29
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.29
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.18
KOG3364	149	consensus Membrane protein involved in organellar	92.06
KOG3783	546	consensus Uncharacterized conserved protein [Funct	91.98
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	91.91
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.89
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.86
KOG1310	758	consensus WD40 repeat protein [General function pr	91.8
KOG2908	380	consensus 26S proteasome regulatory complex, subun	91.51
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.47
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.36
PRK10941	269	hypothetical protein; Provisional	91.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.3
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.84
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.83
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.69
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	90.61
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.43
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	90.27
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.2
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.98
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	89.86
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	89.85
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.82
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.71
KOG0687	393	consensus 26S proteasome regulatory complex, subun	89.52
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.25
KOG1915	677	consensus Cell cycle control protein (crooked neck	88.95
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	88.75
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	88.64
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	88.63
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.56
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.51
COG3947	361	Response regulator containing CheY-like receiver a	88.47
KOG1463	411	consensus 26S proteasome regulatory complex, subun	88.36
COG5159	421	RPN6 26S proteasome regulatory complex component [	88.27
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	88.13
PF04212	69	MIT: MIT (microtubule interacting and transport) d	88.02
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	87.95
KOG2041	1189	consensus WD40 repeat protein [General function pr	87.77
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.75
COG4976	287	Predicted methyltransferase (contains TPR repeat)	87.71
KOG1463	411	consensus 26S proteasome regulatory complex, subun	87.31
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.3
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.58
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	85.95
KOG3783	546	consensus Uncharacterized conserved protein [Funct	85.8
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	85.68
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.63
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	85.57
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	85.11
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	84.88
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.46
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	84.26
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	83.04
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.03
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	82.9
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	82.88
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.72
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.31
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.31
KOG4014	248	consensus Uncharacterized conserved protein (conta	82.18
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.17
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	81.67
COG2912	269	Uncharacterized conserved protein [Function unknow	81.26
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.01
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	80.99
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	80.89
COG2178	204	Predicted RNA-binding protein of the translin fami	80.08

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.50  E-value=2.5e-13  Score=118.58  Aligned_cols=127  Identities=20%  Similarity=0.279  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025965           87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  166 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  166 (245)
                      +....+.+.++-.++...|.+++.+.+.                .+.+.+++|++|..+|++++|...|++|++..+.  
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~p~----------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~--  386 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLCPN----------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE--  386 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh--
Confidence            3333344444444555566666665543                3557788899999999999999999999999998  


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                          .+.+++|||.+|..+|++++|+..|+++|++      +|..++++.|+|.+|.++|+.+.|+++|.+||..
T Consensus       387 ----~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  387 ----FAAAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             ----hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence                8888999999999999999999999999999      8999999999999999999999999999999875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.49  E-value=3.9e-13  Score=104.63  Aligned_cols=128  Identities=17%  Similarity=0.221  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025965           89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  168 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~  168 (245)
                      +..+....+...+..++.+++...|.                ...++..++.+|...|+.+.|.+.|++|+.+.|+    
T Consensus        42 al~YL~~gd~~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----  101 (250)
T COG3063          42 ALGYLQQGDYAQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----  101 (250)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----
Confidence            34444455667777788888887665                3557778899999999999999999999999999    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                        ....++|.|..++.+|+|++|..+|++|+.-.    ..+..+.++.|+|.|..+.|+.++|.++|+++++.-
T Consensus       102 --~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         102 --NGDVLNNYGAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             --ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence              88899999999999999999999999998642    245678899999999999999999999999999864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.44  E-value=1.3e-12  Score=97.69  Aligned_cols=97  Identities=15%  Similarity=0.159  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      ....|.++...|++++|..+|++++.+.|.      ...++.++|.++...|++++|+..|.+++.+      +|..+.+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a   94 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEP   94 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHH
Confidence            445799999999999999999999999888      8899999999999999999999999999998      8889999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++++|.++...|++++|+..|+++++...
T Consensus        95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359         95 VYQTGVCLKMMGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999998654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.44  E-value=9e-12  Score=97.99  Aligned_cols=120  Identities=15%  Similarity=0.207  Sum_probs=103.9

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+..+..+++++...|.                ....+..+|.+|...|++++|+..|++++++.++      ....+.
T Consensus        54 ~~~~~i~~l~~~L~~~P~----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~  111 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQ----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYA  111 (198)
T ss_pred             hHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            445666677777776654                2447788899999999999999999999999998      889999


Q ss_pred             HHHHHH-HHcCC--HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          177 GLGASL-QRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       177 ~lg~~~-~~~g~--~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ++|.++ ...|+  +++|...++++++.      +|....++.++|..+...|++++|+.+|+++++....
T Consensus       112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        112 ALATVLYYQAGQHMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            999975 67787  59999999999999      8889999999999999999999999999999987643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.40  E-value=3.4e-12  Score=111.62  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+++.+.-..+.+..+.++.-|.+++...+.                -+.++.++|.+|.++|++++|+..|++|+++.|
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~----------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPE----------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChh----------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            4444444444444556677777777776654                455788899999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .      .+.++.|+|.+|..+|+.+.|+..|.+||.+      .|..++++.|+|.+|...|+..+|++.|+.++.+-
T Consensus       420 ~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  420 T------FADALSNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             h------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            9      9999999999999999999999999999999      99999999999999999999999999999998753

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.39  E-value=1.1e-11  Score=92.19  Aligned_cols=102  Identities=18%  Similarity=0.114  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ...+...+..|..++..|++++|...|+-...+.+.      ....+++||.++..+|+|++|+..|.+++.+      +
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~   99 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------K   99 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence            445667888899999999999999999999999998      8999999999999999999999999999999      8


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++.+.++.+.|.||...|+.+.|.+.|+.++...
T Consensus       100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999876

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.35  E-value=1.5e-11  Score=81.94  Aligned_cols=73  Identities=29%  Similarity=0.560  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+.++.++|.++..+|+|++|+++|++++++.+..+++. ..+.++.++|.+|..+|++++|.+++++++++.+
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            678899999999999999999999999999977777654 5689999999999999999999999999999875

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=7.2e-12  Score=101.15  Aligned_cols=103  Identities=25%  Similarity=0.365  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      ....+..+-.-|+-....++|.+|+..|.+|+++.|+      .+..|.+.+.+|.++|.|+.|++.++.++.+      
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------  144 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence            4566777778899999999999999999999999998      8999999999999999999999999999999      


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +|..+.+|..+|.+|..+|++++|++.|++++++-
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld  179 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD  179 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence            99999999999999999999999999999999864

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.35  E-value=2.7e-11  Score=101.35  Aligned_cols=102  Identities=20%  Similarity=0.094  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      ..+..++.+|.+|...|++++|+..|++++++.|+      ...+++++|.++...|++++|+..|++++++      +|
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P  129 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------DP  129 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CC
Confidence            34567888899999999999999999999998887      7889999999999999999999999999998      88


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ....++.++|.++...|++++|.+.++++++...
T Consensus       130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P  163 (296)
T PRK11189        130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP  163 (296)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            8888999999999999999999999999987654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.30  E-value=2.9e-10  Score=94.47  Aligned_cols=147  Identities=20%  Similarity=0.285  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      -....+..+........+.+.|.++......          .++....+..+...+.+|... ++++|+.+|++|++++.
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~  105 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR  105 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH
Confidence            3334444444444667777778877776654          255556666777777777665 99999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~-g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+++...+.++.++|.+|... |++++|+++|++|+++++..+.......++..+|.++..+|+|++|++.|++....
T Consensus       106 ~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  106 EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999999999999999999998 99999999999999999999977788889999999999999999999999998764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=4.6e-11  Score=87.98  Aligned_cols=100  Identities=21%  Similarity=0.232  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ......+|..+...|++++|...++++++..+.      ...++.++|.++..+|++++|+.+++++++.      .|..
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~   84 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAAL------DPDD   84 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCC
Confidence            456778899999999999999999999998776      7788999999999999999999999999988      6778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++++|.+|...|++++|..+++++++...
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICG  116 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            88999999999999999999999999998754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.28  E-value=1.4e-10  Score=91.95  Aligned_cols=98  Identities=20%  Similarity=0.294  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ....+|..+...|++++|...++++++..+    .......+.++|.++...|++++|...+.++++.      .+....
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~  170 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------DPQRPE  170 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCChH
Confidence            566778999999999999999999886422    1224556788999999999999999999999887      555667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ++..+|.++...|++++|..+++++++.
T Consensus       171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       171 SLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8889999999999999999999998876

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.27  E-value=1.3e-11  Score=103.55  Aligned_cols=110  Identities=20%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .++-++|+.|+.+|+|+.|+.+.+.-+++++..+|......++.|+|.++.-.|+++.|+++|++.+.++.+.++....+
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            33444455555555555555555555555555555555555555555555555555555555555555555555554445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ...|.+|.+|.-..++++|+.|+++=+.+.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555544443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1.5e-10  Score=93.54  Aligned_cols=124  Identities=15%  Similarity=0.228  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025965           78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  157 (245)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  157 (245)
                      .....+++..++.+.....+++.++..|.++|.+.|.                .+..+.+++.+|.++|.|+.|+...+.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3445568999999999999999999999999998875                244666899999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH
Q 025965          158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  229 (245)
Q Consensus       158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~  229 (245)
                      |+.+.+.      ..++|..||.+|..+|+|++|++.|+++|++      +|.......+|..+-.++++-+
T Consensus       141 Al~iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLel------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALEL------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc------CCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999      9999999999999999999999999999999      8888888888887777666544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.24  E-value=9.8e-11  Score=98.33  Aligned_cols=117  Identities=20%  Similarity=0.286  Sum_probs=109.5

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      +|+-.+-.++.++|++|.-.|+++.|+++|++++.++..+++..-.+..++.+|..|.-..++++||+|+.+-+.++++.
T Consensus       229 GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL  308 (639)
T KOG1130|consen  229 GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL  308 (639)
T ss_pred             hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56555666777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +|..+...+++.+|.+|..+|+.++|..+.++.++..
T Consensus       309 ~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  309 EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888754

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.24  E-value=7.9e-10  Score=97.47  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=118.9

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKK  173 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~  173 (245)
                      .....++..|++++.....        ....+.+..+..+.++|..|+..|+|++|..++++|+++....  ..+.....
T Consensus       255 ~k~~eAv~ly~~AL~i~e~--------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  255 GKYDEAVNLYEEALTIREE--------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            3567777778888776543        1225667788889999999999999999999999999999873  35555777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          174 AARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+.+++.++..++++++|+.++++++++....  .+++..+..+.++|.+|...|++++|.+.|++|+.+.+
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR  398 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999853  44557888999999999999999999999999999875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.24  E-value=2.6e-10  Score=75.88  Aligned_cols=74  Identities=20%  Similarity=0.335  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      ..+.++.++|.+|..+|++++|+.+|++++++....++... .+.++.++|.++..+|++++|++++++++++.+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            35667889999999999999999999999999888887654 689999999999999999999999999999865

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.24  E-value=5e-10  Score=85.86  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=89.6

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      .+....+..++..|..+..+|++++|+..|++++.+.++   +.....++.++|.++...|++++|+.++++++++    
T Consensus        29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----  101 (168)
T CHL00033         29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----  101 (168)
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            444557788889999999999999999999999987543   3334568999999999999999999999999988    


Q ss_pred             CCcchHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHhh
Q 025965          206 GEYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~-------~~g~~~~A~~~y~~al~~~~  243 (245)
                        .+.....+.++|.+|.       .+|+++.|..++++++..++
T Consensus       102 --~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033        102 --NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             --CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence              5555666777777777       88999988888888776643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.20  E-value=3.8e-10  Score=103.62  Aligned_cols=98  Identities=9%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..++.+|.+++..|++++|+..|++++++.|+      ...++.++|.++..+|++++|+..|+++++.      .|..+
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~  467 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAP  467 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCh
Confidence            35556677777777777777777777777665      5566777777777777777777777777766      56666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .++.++|.++...|++++|+.+|++++...
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            777777777777778888887777777654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.19  E-value=1.1e-09  Score=84.20  Aligned_cols=108  Identities=19%  Similarity=0.327  Sum_probs=87.8

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      .++...+..++..|..+...|++++|+.+|+++++..++..   ....++.++|.++...|++++|+..++++++.    
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  101 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALEL----  101 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            45566788889999999999999999999999998766422   23568899999999999999999999999998    


Q ss_pred             CCcchHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHh
Q 025965          206 GEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISRL  242 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~-------~~~A~~~y~~al~~~  242 (245)
                        .|....++.++|.+|...|+       +++|...|+++++.+
T Consensus       102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~  143 (172)
T PRK02603        102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYW  143 (172)
T ss_pred             --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHH
Confidence              67778888899999988766       455555555555543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.18  E-value=4.1e-10  Score=103.40  Aligned_cols=131  Identities=13%  Similarity=0.062  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      ++..+.-.....+.+.++..+.+++...|.                ....++.+|.++...|++++|+..+++++++.++
T Consensus       334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  397 (615)
T TIGR00990       334 LNLRGTFKCLKGKHLEALADLSKSIELDPR----------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE  397 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            344344444455788899999999987654                2346778899999999999999999999998776


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                            ...+++++|.++...|++++|+.+|++++++      .|....++.++|.++..+|++++|...|+++++...
T Consensus       398 ------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P  464 (615)
T TIGR00990       398 ------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP  464 (615)
T ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                  6788999999999999999999999999998      787888999999999999999999999999998654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.17  E-value=3.4e-10  Score=96.94  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      +...|...+..|+|++|+..|++|+++.+.      ...++.++|.++..+|++++|+..+++++++      .|..+.+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a   72 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKA   72 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHH
Confidence            445689999999999999999999999887      7889999999999999999999999999999      8888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |+++|.+|..+|++++|+.+|+++++...
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P  101 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999998653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=6.1e-10  Score=94.69  Aligned_cols=117  Identities=19%  Similarity=0.355  Sum_probs=75.7

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++.-+++++...|.                ...++..+|.-|..+++...|+..|++|+++.|.      .-.+++
T Consensus       345 eHEKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWY  402 (559)
T KOG1155|consen  345 EHEKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWY  402 (559)
T ss_pred             hHHHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHh
Confidence            345555566666655443                2334445577777777777777777777777666      666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ++|.+|-.++.+.=|+-+|++|+..      .|+.+..+..+|.||.++++.++|+++|.+++..
T Consensus       403 GLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  403 GLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             hhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            6776666666666666666666666      6666666666666666666666666666666643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.17  E-value=3.9e-10  Score=76.19  Aligned_cols=84  Identities=26%  Similarity=0.397  Sum_probs=69.9

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965          144 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  223 (245)
Q Consensus       144 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~  223 (245)
                      .+|+|+.|+.+++++++..+.  ++  ....+..+|.+++++|+|++|+..+++ ++.      ++......+.+|.++.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLL   69 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHH
Confidence            368999999999999998875  22  455677799999999999999999999 555      5556778888899999


Q ss_pred             HcCCHHHHHHHHHHH
Q 025965          224 ELGDLERAARFYDKY  238 (245)
Q Consensus       224 ~~g~~~~A~~~y~~a  238 (245)
                      .+|++++|++.++++
T Consensus        70 ~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   70 KLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTT-HHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhcC
Confidence            999999999999875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.14  E-value=1.9e-09  Score=89.53  Aligned_cols=113  Identities=24%  Similarity=0.321  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      -+..+...|..|...|++++|.+.|.++.++....+++...+.++...+.++... ++++|+.+|++|++++.+.|+...
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3445557899999999999999999999999999999999999999999888776 999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhc
Q 025965          211 STEAYGAIADCYTEL-GDLERAARFYDKYISRLES  244 (245)
Q Consensus       211 ~~~a~~~la~~y~~~-g~~~~A~~~y~~al~~~~~  244 (245)
                      .+.++.++|.+|... |++++|+++|++|++.++.
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~  147 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ  147 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999998864

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.13  E-value=5.8e-10  Score=72.31  Aligned_cols=64  Identities=31%  Similarity=0.482  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISR  241 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~  241 (245)
                      +..+..+|..+...|+|++|+.+|++++++      +|..+.+++++|.+|..+| ++++|+++++++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567889999999999999999999999999      8999999999999999999 799999999999986

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=7.9e-10  Score=94.02  Aligned_cols=118  Identities=27%  Similarity=0.366  Sum_probs=105.7

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      ...+++++|..+++..|.                ...+++.+|+.|-.++.+.=|+-+|++|.++-|+      ....+.
T Consensus       379 Nt~AAi~sYRrAvdi~p~----------------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~  436 (559)
T KOG1155|consen  379 NTHAAIESYRRAVDINPR----------------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWV  436 (559)
T ss_pred             ccHHHHHHHHHHHhcCch----------------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHH
Confidence            457888888888887664                5668999999999999999999999999999988      888899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .||.+|...++.++|+..|+.|+..      ......++..+|.+|.+++++++|..+|++.++..
T Consensus       437 aLG~CY~kl~~~~eAiKCykrai~~------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  437 ALGECYEKLNRLEEAIKCYKRAILL------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhc------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987      33356789999999999999999999999999854

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.11  E-value=2e-09  Score=77.04  Aligned_cols=105  Identities=24%  Similarity=0.251  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .++..|..+...|++++|+..++++++..++   ......++..+|.++...|++++|+.+|++++...   .+.+....
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~   77 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPD   77 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccH
Confidence            5677899999999999999999999876543   22346778899999999999999999999998772   22333467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ++..+|.++...|++++|..+++++++...+
T Consensus        78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            8999999999999999999999999987643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.11  E-value=1.5e-09  Score=84.83  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=95.6

Q ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      +....+...+.+|..|+..|++..|...+++|++..|+      ...++..++.+|...|+.+.|-+.|++|+++     
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----   98 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSL-----   98 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence            44455667788899999999999999999999999999      8899999999999999999999999999999     


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                       .|...++++|.|.-...+|++++|..+|++|+..
T Consensus        99 -~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~  132 (250)
T COG3063          99 -APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD  132 (250)
T ss_pred             -CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence             8888999999999999999999999999999863

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.10  E-value=1.9e-08  Score=75.19  Aligned_cols=100  Identities=25%  Similarity=0.279  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      ....+.+.+|..++..|++++|...|+++++.   ..++.....+...++.++..+|+|++|+..++..       .+.+
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~  115 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEA  115 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcc
Confidence            45567888999999999999999999998873   3566777788999999999999999999998662       2355


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      ..+.++..+|++|...|++++|...|++|+
T Consensus       116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            567788899999999999999999999885

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.09  E-value=9.5e-10  Score=74.14  Aligned_cols=97  Identities=27%  Similarity=0.399  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .++.+|..+...|++++|+..++++++..+.      ...++..+|.++...|++++|+..++++++.      .+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAK   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchh
Confidence            3567899999999999999999999987766      4477889999999999999999999999887      455557


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++..+|.++...|++++|..+++++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence            89999999999999999999999988654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=2.3e-10  Score=100.81  Aligned_cols=122  Identities=18%  Similarity=0.241  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025965           91 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  170 (245)
Q Consensus        91 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~  170 (245)
                      .+.-+.+.+.++..+++++...+.                .++++-..|.-+..+.+||+|+.+|++|+.+.++      
T Consensus       430 cfSLQkdh~~Aik~f~RAiQldp~----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------  487 (638)
T KOG1126|consen  430 CFSLQKDHDTAIKCFKRAIQLDPR----------------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------  487 (638)
T ss_pred             hhhhhhHHHHHHHHHHHhhccCCc----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------
Confidence            333345667777777777775543                2333444466666666666666666666666666      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ...|++++|.+|.++++++.|.-+|++|+++      .|........+|..+..+|+.|+|+..|++|+-
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcC------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            6666666666666666666666666666666      666666666666666666666666666666654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.08  E-value=2.4e-09  Score=84.89  Aligned_cols=102  Identities=23%  Similarity=0.355  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+..+|.++...|++++|...++++++..+.      ...++.++|.++...|++++|+..++++++...    .+..
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~  134 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQP  134 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccc
Confidence            345566788888888888888888888877655      456777888888888888888888888876421    3344


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...+.++|.++...|++++|..+++++++...
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            56778888888888888888888888887643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.06  E-value=1.1e-08  Score=82.56  Aligned_cols=141  Identities=16%  Similarity=0.118  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+...+.......+.+.++..+.+.+...|.           ++  ....+++.+|.++...|++++|+..|+++++..|
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----------~~--~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p  101 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESRYPF-----------SP--YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP  101 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------ch--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence            4444455555556677777778877776653           22  2234567889999999999999999999999887


Q ss_pred             hCCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCcchHH--------------HHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYSGST--------------EAYGAIADC  221 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~--------g~~~~Ai~~~~~al~~~~~~~d~~~~~--------------~a~~~la~~  221 (245)
                      +...   ...+++.+|.++...        |++++|++.++++++....   .+...              .....+|.+
T Consensus       102 ~~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       102 NHPD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             CCCc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5332   345788899998876        8899999999999877322   11111              123478999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHhh
Q 025965          222 YTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       222 y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |...|++++|...|+++++.++
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p  197 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYP  197 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCC
Confidence            9999999999999999998754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.06  E-value=2.1e-09  Score=102.32  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..+..+|.++...|++++|+..+++++++.|+      ...++.++|.++...|++++|+..|+++++.      .|..+
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------~P~~~  677 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKG------LPDDP  677 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCH
Confidence            46678899999999999999999999999998      7889999999999999999999999999998      88889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+++++|.++..+|++++|..+|+++++...
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999998653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=2.7e-10  Score=98.99  Aligned_cols=100  Identities=21%  Similarity=0.211  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ......+|..|+..|+|++|++.|+.||...|+      ....++.||.++....+.++||..|++|+++      .|+.
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~y  497 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQL------QPGY  497 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCe
Confidence            346667899999999999999999999999998      8889999999999999999999999999999      9999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..+.+|+|.+|..+|.|++|.++|-.||.+-+
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~  529 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQR  529 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999998654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=2.1e-08  Score=83.89  Aligned_cols=128  Identities=15%  Similarity=0.059  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      ..+.+......+..+.++..|.+++...|.                ...++..+|.++...|++++|+..|++++++.|+
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  130 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPD----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT  130 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            444444444445677777888888886654                2457788999999999999999999999999988


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                            ...++.++|.++...|++++|+..++++++.      .|..+.. ..........+++++|...+++++..
T Consensus       131 ------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~------~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        131 ------YNYAYLNRGIALYYGGRYELAQDDLLAFYQD------DPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence                  7889999999999999999999999999987      4443321 11122345678899999999877654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.8e-09  Score=93.81  Aligned_cols=104  Identities=22%  Similarity=0.306  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ....+|.+.+..+.|.+|..+|+.++...++...... ......|||.++++++.|++||.+|+++|.+      .|..+
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l------~~k~~  489 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL------SPKDA  489 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc------CCCch
Confidence            5566799999999999999999999988777655543 4456899999999999999999999999999      88889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|..+|.+|..+|+++.|+++|.+++.+-.
T Consensus       490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  490 STHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999987543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.02  E-value=5.7e-09  Score=86.56  Aligned_cols=136  Identities=24%  Similarity=0.280  Sum_probs=120.9

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----ChHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEK  172 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----d~~~~~  172 (245)
                      ..+..++.+++++.++..          ++|...+...+..+|..|-...|+++|..+..+|.++..+.+    ......
T Consensus       137 ~fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  137 VFQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             HHHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            567778888888888776          477777788888899999999999999999999999998876    233456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      -+++.++.+++.+|....|.++.+++.+++-..||.+..+.+...+|++|..+||.|.|...|+.|....
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999998753

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.02  E-value=2e-09  Score=69.72  Aligned_cols=64  Identities=28%  Similarity=0.441  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQI  201 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~  201 (245)
                      +..+...|..++..|++++|+.+|++++++.++      ...+++++|.++..+| ++++|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            456778899999999999999999999999988      8999999999999999 799999999999987

...

>PRK12370 invasion protein regulator; Provisional

Probab=99.01  E-value=5e-09  Score=94.97  Aligned_cols=97  Identities=16%  Similarity=-0.018  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .++..+|.++...|++++|+..|++|+++.|+      ...+++.+|.++...|++++|+..+++++++      +|...
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------~P~~~  406 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKL------DPTRA  406 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCh
Confidence            34556688888888899999889988888887      7778888888888888888888888888887      56555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .++..++.++...|++++|...++++++.
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            55555565666677777777777777654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.00  E-value=5.1e-08  Score=86.15  Aligned_cols=138  Identities=15%  Similarity=0.135  Sum_probs=113.0

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC--hHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD--PIEEKKA  174 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d--~~~~~~a  174 (245)
                      ..+.+...++++++.....        ...++...+....++|..|+.+|+|++|.+.|++|++......+  .......
T Consensus       340 ~~Eea~~l~q~al~i~~~~--------~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~  411 (508)
T KOG1840|consen  340 EYEEAKKLLQKALKIYLDA--------PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP  411 (508)
T ss_pred             chhHHHHHHHHHHHHHHhh--------ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence            5566666666666654321        11233356667778999999999999999999999999988765  5667888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~-d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++++|..+.+.+++.+|...|.+++.+.+..| +.|+....|.|||-+|..+|+++.|.++-++++..-
T Consensus       412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~  480 (508)
T KOG1840|consen  412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR  480 (508)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996554 567888999999999999999999999999988643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.00  E-value=1.2e-08  Score=83.41  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=89.3

Q ss_pred             HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          133 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       133 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+..|..+ ...|+|++|+..|++.++.+|+   ......+++.+|.+|+..|+|++|+..|+++++.+   .+++..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence            3455566665 5679999999999999998876   33456789999999999999999999999998773   356678


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +++++.+|.+|..+|++++|...|++.++.+.
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            89999999999999999999999999998764

>PRK12370 invasion protein regulator; Provisional

Probab=98.99  E-value=5.1e-09  Score=94.93  Aligned_cols=118  Identities=15%  Similarity=0.064  Sum_probs=96.8

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhCCCh
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR---------NQDLEKAFTEFKAALELAQNVKDP  168 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~g~~~~A~~~~~~al~l~~~~~d~  168 (245)
                      .+.++..+.+++...|.              .  ..++..+|.+|..         .+++++|...+++|+++.|+    
T Consensus       277 ~~~A~~~~~~Al~ldP~--------------~--a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~----  336 (553)
T PRK12370        277 LQQALKLLTQCVNMSPN--------------S--IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN----  336 (553)
T ss_pred             HHHHHHHHHHHHhcCCc--------------c--HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC----
Confidence            34556666666665543              2  3344455665542         34589999999999999988    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                        ...++..+|.++...|++++|+..|++++++      +|+.+.+++++|.++...|++++|...++++++.-.
T Consensus       337 --~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P  403 (553)
T PRK12370        337 --NPQALGLLGLINTIHSEYIVGSLLFKQANLL------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDP  403 (553)
T ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence              7889999999999999999999999999999      898899999999999999999999999999988643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.98  E-value=5.1e-09  Score=78.21  Aligned_cols=109  Identities=8%  Similarity=0.013  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025965           89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  168 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~  168 (245)
                      +.......+.+.++..|.+++...|.                ....+..+|.++...|++++|+..|++++++.|.    
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----   90 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS----   90 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----
Confidence            33334444566677777777776553                3457788899999999999999999999999988    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                        ...++.++|.++...|++++|+..|.+++++      .|..+..+.+.|.+...+
T Consensus        91 --~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~------~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         91 --HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM------SYADASWSEIRQNAQIMV  139 (144)
T ss_pred             --CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHH
Confidence              8899999999999999999999999999999      888888888888776543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.92  E-value=1.6e-08  Score=93.39  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHCCCHHH----HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          135 RLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~----A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ...+|..+...|++++    |...|++++++.|+      ...++.++|.++..+|++++|+.++++++++      .|.
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~  316 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLAT------HPD  316 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCC
Confidence            3344555555555543    45555555554444      3444555555555555555555555555544      344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      ...++.++|.+|...|++++|...|++++
T Consensus       317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        317 LPYVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44444455555555555555555554444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.5e-08  Score=86.91  Aligned_cols=119  Identities=22%  Similarity=0.311  Sum_probs=105.3

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+..+..+.++.+..|.           +++     +++.+|.+++.+++|++|+..|++++++.|+      .+.++.
T Consensus       375 ~~~~~~~~F~~A~~ldp~-----------n~d-----vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~i  432 (606)
T KOG0547|consen  375 QSEKMWKDFNKAEDLDPE-----------NPD-----VYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYI  432 (606)
T ss_pred             ccHHHHHHHHHHHhcCCC-----------CCc-----hhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHH
Confidence            456666667777776665           333     7888999999999999999999999999999      999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .++.+.++++++++++..|+.+++-      =|..+.+|...|.+...++++++|.++|++|++.-+
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999887      677888999999999999999999999999998643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.89  E-value=1.4e-07  Score=81.62  Aligned_cols=94  Identities=24%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STE  213 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~~  213 (245)
                      +..+|..+...|++++|..+++++++..+.      ...++..+|.++...|++++|+..++++++.      .+. ...
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~  250 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQ------DPEYLSE  250 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------ChhhHHH
Confidence            344556666666666666666666655444      3445555666666666666666666665544      221 233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ++..++.+|...|++++|...++++++
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555555555555555555544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.89  E-value=3.1e-07  Score=74.07  Aligned_cols=137  Identities=14%  Similarity=0.121  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHH
Q 025965           90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN--------QDLEKAFTEFKAALEL  161 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~l  161 (245)
                      .......+.+.++..|.+.+...|.           ++..  ..+++..|.+++..        |++++|+..++++++.
T Consensus        78 ~~~~~~~~~~~A~~~~~~~l~~~p~-----------~~~~--~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  144 (235)
T TIGR03302        78 YAYYKSGDYAEAIAAADRFIRLHPN-----------HPDA--DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR  144 (235)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHCcC-----------CCch--HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            3333444677788888888877664           2221  23566778888876        7899999999999988


Q ss_pred             HHhCCChHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHH
Q 025965          162 AQNVKDPIEE-----------KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  230 (245)
Q Consensus       162 ~~~~~d~~~~-----------~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~  230 (245)
                      .|+.......           ......+|..+..+|++++|+..++++++...   +.+..+.+++++|.+|..+|++++
T Consensus       145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~~~  221 (235)
T TIGR03302       145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLKDL  221 (235)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCHHH
Confidence            7764332211           11234788999999999999999999987733   345678899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 025965          231 AARFYDKYISRL  242 (245)
Q Consensus       231 A~~~y~~al~~~  242 (245)
                      |..+++.....+
T Consensus       222 A~~~~~~l~~~~  233 (235)
T TIGR03302       222 AQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHHhhC
Confidence            999988876654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.88  E-value=3.4e-08  Score=91.26  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ..++..+|.++...|++++|+..+++++++.|.      ...+..++|.++...|++++|+..|+++++.      .|..
T Consensus       284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~  351 (656)
T PRK15174        284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVT  351 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------Cccc
Confidence            456677899999999999999999999998887      6778889999999999999999999999887      6666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...+..+|.++...|++++|...|+++++...
T Consensus       352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            66777789999999999999999999988643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.87  E-value=3.8e-08  Score=96.48  Aligned_cols=124  Identities=15%  Similarity=0.148  Sum_probs=98.9

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH------
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------  170 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~------  170 (245)
                      +.+.++..+++++...|.                ...++..+|.+|..+|++++|+.+|+++++..++......      
T Consensus       284 ~~~~A~~~l~~aL~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPK----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            445566666666665443                1346777899999999999999999999998775433210      


Q ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          171 --EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       171 --~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                        .......+|..+...|++++|+..|+++++.      +|....++..+|.+|...|++++|+++|+++++..
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~  415 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD  415 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence              1223456788999999999999999999998      77778899999999999999999999999999764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.2e-08  Score=85.76  Aligned_cols=138  Identities=20%  Similarity=0.223  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025965           93 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  172 (245)
Q Consensus        93 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~  172 (245)
                      +-......++..+++++...|..-...    ..--....+...-..|+-.+..|+|.+|.+.|..|+.+.|+  +....+
T Consensus       214 yy~~~~~ka~~hf~qal~ldpdh~~sk----~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~na  287 (486)
T KOG0550|consen  214 YYNDNADKAINHFQQALRLDPDHQKSK----SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNA  287 (486)
T ss_pred             ccccchHHHHHHHhhhhccChhhhhHH----hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhH
Confidence            333345556667888887766420000    00112234556667899999999999999999999999987  444567


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..|.|.+.+..+.|+.++|+..++.++++      ++....++...|.||..+++|++|.++|+++++.-
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88999999999999999999999999999      89999999999999999999999999999998753

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2.9e-08  Score=83.62  Aligned_cols=106  Identities=16%  Similarity=0.210  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--C-------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--D-------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  202 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--d-------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~  202 (245)
                      +...-..|+.|+..|+|..|..-|++|+.......  +       ......++.|++.++..+++|.+|+..+.++|.+ 
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence            33444679999999999999999999998776321  1       1113456889999999999999999999999999 


Q ss_pred             HHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          203 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       203 ~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                           ++++..+++..|.++..+|+|+.|+..|+++++.-.
T Consensus       287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P  322 (397)
T KOG0543|consen  287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP  322 (397)
T ss_pred             -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence                 899999999999999999999999999999998653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.86  E-value=4.5e-08  Score=90.12  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ..+....+.+..+.+++++|...++++++..++      ...+++.+|.++...|+|++|+..|++++.-      .|+.
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~  187 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWDEIGQSEQADACFERLSRQ------HPEF  187 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------CCCc
Confidence            345556688888999999999999999988888      8888889999999999999999999998774      6677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.++...|+.++|...|+++++...
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            88899999999999999999999999988653

>PRK15331 chaperone protein SicA; Provisional

Probab=98.86  E-value=2.8e-08  Score=74.41  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=89.8

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      +-....+...+..|..++..|++++|...|+-...+.+.      ......+||.++..+++|++|+..|..+..+    
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l----  100 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL----  100 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence            334556778888899999999999999999987766555      5667899999999999999999999999888    


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                        +++.+...+..|.||..+|+.++|..+|..+++..
T Consensus       101 --~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~  135 (165)
T PRK15331        101 --LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERT  135 (165)
T ss_pred             --ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCc
Confidence              45556678899999999999999999999998743

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=9.3e-09  Score=90.88  Aligned_cols=102  Identities=14%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      .....+++.+|.+|..+++++.|.-+|++|+++.|.      .......+|..+.+.|+.++|+..|++|+.+      +
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l------d  553 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRKDKALQLYEKAIHL------D  553 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc------C
Confidence            335678899999999999999999999999999988      7788888999999999999999999999888      6


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +..+.+.+..|.++..++++++|..-+++.-+..
T Consensus       554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v  587 (638)
T KOG1126|consen  554 PKNPLCKYHRASILFSLGRYVEALQELEELKELV  587 (638)
T ss_pred             CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence            7777777788888888888888887777665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.86  E-value=1.3e-07  Score=75.30  Aligned_cols=93  Identities=25%  Similarity=0.292  Sum_probs=84.8

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      ..|......|+|..|+..+.++.++.|+      ..++++.+|.+|.+.|++++|-..|.+++++      .++.+.+..
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p~~~n  172 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEPSIAN  172 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCchhhh
Confidence            3688999999999999999999999998      8999999999999999999999999999999      777788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          217 AIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      |+|..|.-.||++.|..++..+...
T Consensus       173 Nlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         173 NLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            9999999999999999998887643

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.86  E-value=1.3e-08  Score=65.04  Aligned_cols=63  Identities=22%  Similarity=0.327  Sum_probs=56.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      +.+|..+...|+|++|+..|+++++.      .|....+++.+|.++..+|++++|..+|+++++...+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            35789999999999999999999887      7889999999999999999999999999999987654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.84  E-value=1.6e-07  Score=81.20  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ....+..+|..|...|++++|...|+++++..+.      ...++..++.++...|++++|++.++++++..... ....
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~  178 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVE  178 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHH
Confidence            3445666777777778888887777777665433      45667777778888888888888887776542100 0112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ....+.++|.++...|++++|..+|+++++..
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  210 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAAD  210 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence            34456678888888888888888888887654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.83  E-value=4.6e-08  Score=83.90  Aligned_cols=113  Identities=12%  Similarity=0.170  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +..++.......+.+.++..|.+++...+.                ....++.+|.+|...|++++|+..+++++++.+.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            445556666666788888889888887664                2346778899999999999999999999999988


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                            ...+++.+|.++...|+|++|+..|++++++      .|....+...++.+...+
T Consensus        69 ------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         69 ------LAKAYLRKGTACMKLEEYQTAKAALEKGASL------APGDSRFTKLIKECDEKI  117 (356)
T ss_pred             ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Confidence                  7889999999999999999999999999999      777788888888886655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.79  E-value=2.1e-08  Score=64.06  Aligned_cols=59  Identities=27%  Similarity=0.450  Sum_probs=55.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ..|..++..|++++|+..|+++++..|.      ...++..+|.++..+|++++|+.+|+++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999998887      8999999999999999999999999999988

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.79  E-value=1.4e-07  Score=90.15  Aligned_cols=93  Identities=12%  Similarity=0.139  Sum_probs=82.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  217 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~  217 (245)
                      ++......|++++|+..|++++++.|+       ..++.++|.++.+.|++++|+..|++++.+      +|..+.++.+
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~n  648 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAA  648 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence            345555669999999999999987763       457889999999999999999999999999      8888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          218 IADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       218 la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|.++...|++++|+..|+++++...
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999998654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.78  E-value=1e-07  Score=93.55  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH------------------------------------HHHHHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------------------------------------EKKAAR  176 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~------------------------------------~~~a~~  176 (245)
                      .++..+|.++...|++++|+.+|++++++.+.......                                    ....+.
T Consensus       386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~  465 (1157)
T PRK11447        386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA  465 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence            46677899999999999999999999987665221100                                    012234


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+|..+...|++++|+..|+++++.      .|..+.+++.+|.+|...|++++|...++++++..
T Consensus       466 ~~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~  525 (1157)
T PRK11447        466 QQAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK  525 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            5677788899999999999999998      78888899999999999999999999999998754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.77  E-value=1.6e-07  Score=86.59  Aligned_cols=97  Identities=11%  Similarity=0.097  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ..++..+|.+....|.+++|...++.+++++|+      ...+..+++.++.+.+++++|+..++++++.      .|..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~~  153 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSSS  153 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCCC
Confidence            457778899999999999999999999999999      9999999999999999999999999999998      8999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      +.+++.+|.+...+|++++|...|++++.
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            99999999999999999999999999986

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.76  E-value=1.6e-07  Score=88.63  Aligned_cols=62  Identities=18%  Similarity=0.060  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      ..++..+|.++...|++++|+..|+++++.      .|....++..+|.++...|++++|.+.+++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  186 (899)
T TIGR02917       125 AELLALRGLAYLGLGQLELAQKSYEQALAI------DPRSLYAKLGLAQLALAENRFDEARALIDEVL  186 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344445555555555555555555555443      33333344444444444444444444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.74  E-value=1.1e-07  Score=76.50  Aligned_cols=103  Identities=20%  Similarity=0.223  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      .+..|.-++..|+|..|...|..-++.+|+   ......+++.||.+++.+|+|++|...|..+++-   .++.+..+++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~---~P~s~KApda  217 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD---YPKSPKAPDA  217 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh---CCCCCCChHH
Confidence            778899999999999999999999887765   5557889999999999999999999999997664   6667788899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.-+|.+...+|+.++|...|++.++.+.
T Consensus       218 llKlg~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         218 LLKLGVSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999998774

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.73  E-value=9.2e-07  Score=63.58  Aligned_cols=100  Identities=16%  Similarity=0.138  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +.+..|..+...|+.++|+.+|+++++.  .+ +......++.++|.++...|++++|+..+++++.-   ..+++....
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~   76 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA--GL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAA   76 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHH
Confidence            5678899999999999999999999874  22 23345678999999999999999999999998764   233344566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      ....++.+....|+.++|...+-.++
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            67778999999999999998876654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.73  E-value=1.8e-07  Score=88.37  Aligned_cols=96  Identities=16%  Similarity=0.238  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .....+|.+|...|++++|+..|+++++..|+      ...++.++|.++...|+ .+|+.+++++++.      .|..+
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~------~~~~~  837 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKL------APNIP  837 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh------CCCCc
Confidence            45566677777778888888888877776655      45556666666666666 6666666666665      44445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+.++|.+|...|++++|.++|+++++.
T Consensus       838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       838 AILDTLGWLLVEKGEADRALPLLRKAVNI  866 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55666666666667777777766666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=2.8e-07  Score=70.84  Aligned_cols=105  Identities=23%  Similarity=0.272  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ++..+-.-|+-++..|+|++|..-|..|+++.|.... .....+|.|.|.+...++.++.||..+.++|++      .|.
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pt  166 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPT  166 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------Cch
Confidence            3445556799999999999999999999999987554 446678899999999999999999999999999      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .-.++...|.+|.+...++.|++.|++.++..
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            88999999999999999999999999988754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.6e-07  Score=81.37  Aligned_cols=99  Identities=14%  Similarity=0.233  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +......|+.++..|+|..|+.+|.+|+...|+      .+..|.|.+.+|...|.+..|+...++++++      +|..
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~  425 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNF  425 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchH
Confidence            444455699999999999999999999999888      8999999999999999999999999999999      8999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+|..-|.++..+.+|++|.+.|+++++.-
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999998753

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=9.4e-08  Score=82.14  Aligned_cols=95  Identities=19%  Similarity=0.242  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ...+..+-..|+-++.+|+|++|+.+|.+|+++.++      .+..|-|++.+|...|++++-++...+++++      +
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl------~  179 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALEL------N  179 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc------C
Confidence            445667778999999999999999999999999998      6888999999999999999999999999999      9


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHH
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFY  235 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y  235 (245)
                      |....+++..+.++..+|++++|....
T Consensus       180 P~Y~KAl~RRA~A~E~lg~~~eal~D~  206 (606)
T KOG0547|consen  180 PDYVKALLRRASAHEQLGKFDEALFDV  206 (606)
T ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence            999999999999999999999998755

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=2.6e-07  Score=75.34  Aligned_cols=102  Identities=20%  Similarity=0.207  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCC
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~---~~~Ai~~~~~al~~~~~~~d  207 (245)
                      .+..+..+|.+|..+|+++.|...|.+|+++.++      ....+.++|.+++.+.+   ..++...+++++..      
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------  222 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKARALLRQALAL------  222 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------
Confidence            3446777899999999999999999999999999      88889999999877654   57899999999999      


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ++....+...+|..++..|+|.+|...+++.++....
T Consensus       223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            8999999999999999999999999999999987643

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.68  E-value=1.2e-06  Score=62.90  Aligned_cols=98  Identities=20%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  215 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~  215 (245)
                      -..|......|+.+.|++.|.+++.+.|.      .+.+|+|.+..++-+|+.++|++.++++++++-..  ......++
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~  118 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAF  118 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHH
Confidence            34688888999999999999999999998      89999999999999999999999999999984311  22456788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          216 GAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       216 ~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ...|.+|..+|+-+.|...|+.+-+.
T Consensus       119 vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  119 VQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            99999999999999999999988654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=4.4e-07  Score=76.61  Aligned_cols=150  Identities=17%  Similarity=0.244  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965           80 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  159 (245)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  159 (245)
                      ....+..+.+..+.....+..+...|.++++....-......+.. .-......++++++.++..+++|..|+....++|
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~-~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQK-KAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHH-HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            444567777888888888999999999998886532111111100 1112345678899999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 025965          160 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE-RAARFYDKY  238 (245)
Q Consensus       160 ~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~-~A~~~y~~a  238 (245)
                      ++.++      ...+++..|.++..+|+|+.|+..|++++++      .|.+-.+...+..+.....++. +..+.|.+.
T Consensus       285 e~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  285 ELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             hcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999      9999999999999999999999999999999      7877778888887776655554 447777777


Q ss_pred             HHHh
Q 025965          239 ISRL  242 (245)
Q Consensus       239 l~~~  242 (245)
                      +...
T Consensus       353 F~k~  356 (397)
T KOG0543|consen  353 FAKL  356 (397)
T ss_pred             hhcc
Confidence            6644

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.5e-07  Score=82.02  Aligned_cols=127  Identities=21%  Similarity=0.284  Sum_probs=104.3

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      ...++++..|..+-...+.-                -.-.+++|.-|...+++..|..+|.+|+.++|.      .+..+
T Consensus       360 ~EhdQAmaaY~tAarl~~G~----------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~  417 (611)
T KOG1173|consen  360 GEHDQAMAAYFTAARLMPGC----------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVL  417 (611)
T ss_pred             chHHHHHHHHHHHHHhccCC----------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhh
Confidence            35577777777777666531                113556899999999999999999999999999      88899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ..+|.+.+..+.|.+|..+|++++...+...... -......|+|.+|.+++.+++|+.+|++++...+.
T Consensus       418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999997666554333 24456899999999999999999999999986543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.65  E-value=1.1e-07  Score=78.82  Aligned_cols=98  Identities=24%  Similarity=0.369  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ....+...|.++...|++++|+..|++++++.|+      ...+...++..+...|+++++.+.++...+..      +.
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~  212 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD  212 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence            4556777899999999999999999999999987      44455555555555555555444444433331      11


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .+..+..+|.+|..+|++++|..+|++++.
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccccccccccccc
Confidence            222334445555555555555555555544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=6.8e-07  Score=71.30  Aligned_cols=120  Identities=19%  Similarity=0.144  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC
Q 025965           88 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD  167 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d  167 (245)
                      +++..-...++..++..+.++....|.                +...+..+|.+|.+.|+++.|...|.+++++.++   
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~----------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---  166 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPT----------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---  166 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCC----------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---
Confidence            444444445667777777777766553                2336667799999999999999999999999999   


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 025965          168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY  235 (245)
Q Consensus       168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y  235 (245)
                         .....+|+|.++.-.||++.|..++..+...      .+....+..|++.+-...|+++.|...-
T Consensus       167 ---~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         167 ---EPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ---CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence               8999999999999999999999999998655      5556778999999999999999998654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.62  E-value=1.3e-06  Score=82.39  Aligned_cols=105  Identities=13%  Similarity=-0.002  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      +.....+....|.++...|++++|++.+++++...|.      ...++..+|.++...|++++|+..+++++.+      
T Consensus       355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------  422 (765)
T PRK10049        355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASVLQARGWPRAAENELKKAEVL------  422 (765)
T ss_pred             CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------
Confidence            3334556677899999999999999999999999887      6789999999999999999999999999999      


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      .|.....+..+|.++...|++++|...++++++...+
T Consensus       423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            7888889999999999999999999999999987654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.62  E-value=3.2e-07  Score=78.42  Aligned_cols=103  Identities=20%  Similarity=0.209  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      .........|.++..+|++++|...+++++++.|+      ...++..+|.++...|++++|+.++.++++....  +..
T Consensus       112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~  183 (355)
T cd05804         112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSM  183 (355)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccc
Confidence            34556667799999999999999999999999887      5778899999999999999999999999887332  112


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .....+..+|.++...|++++|...|++++.
T Consensus       184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         184 LRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            2345677899999999999999999999863

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.61  E-value=1.9e-07  Score=77.38  Aligned_cols=118  Identities=20%  Similarity=0.254  Sum_probs=77.2

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +...++..|++++...|.              .  ......+++.+...|+++++.+.++......+.      ....+.
T Consensus       161 ~~~~A~~~~~~al~~~P~--------------~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~  218 (280)
T PF13429_consen  161 DPDKALRDYRKALELDPD--------------D--PDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWD  218 (280)
T ss_dssp             HHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCH
T ss_pred             CHHHHHHHHHHHHHcCCC--------------C--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHH
Confidence            667777888888887664              1  224555688899999999988888877776655      444566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+|.++...|++++|+.+++++++.      .|..+..+.++|.++...|+.++|...+.+++...
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT-------------------
T ss_pred             HHHHHhccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999988      88889999999999999999999999999988754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.6e-06  Score=66.74  Aligned_cols=129  Identities=16%  Similarity=0.193  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025965           78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  157 (245)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  157 (245)
                      +..+.+++...+..+...+.++.+...|+.++...+.           .+...+...+.+.|.+...++..+.|+....+
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~-----------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsK  159 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPS-----------TSTEERSILYSNRAAALIKLRKWESAIEDCSK  159 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc-----------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence            3455568888888888888999999999999999886           45566777888999999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH
Q 025965          158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  229 (245)
Q Consensus       158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~  229 (245)
                      |+++.+.      ...++...+.+|-.+..|++|++.|++.++.      +|..-.+...+.++--...+..
T Consensus       160 aiel~pt------y~kAl~RRAeayek~ek~eealeDyKki~E~------dPs~~ear~~i~rl~~~i~ern  219 (271)
T KOG4234|consen  160 AIELNPT------YEKALERRAEAYEKMEKYEEALEDYKKILES------DPSRREAREAIARLPPKINERN  219 (271)
T ss_pred             hHhcCch------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CcchHHHHHHHHhcCHHHHHHH
Confidence            9999998      8888889999999999999999999999988      7877777777766655444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.58  E-value=1.2e-06  Score=65.46  Aligned_cols=103  Identities=12%  Similarity=0.062  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 025965           79 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA  158 (245)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  158 (245)
                      .+.++.+..-...+...++.+.+..-|+....+.+.                ...-++++|.++..+|+|++|++.|.+|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----------------SFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455566666666677777777777777766665553                3557888999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          159 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       159 l~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      ..+.++      .+..+.++|.++...|+.+.|.+.|+.++..+.
T Consensus        96 ~~L~~d------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         96 AQIKID------APQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HhcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            999998      899999999999999999999999999999973

>PLN02789 farnesyltranstransferase

Probab=98.57  E-value=2.3e-06  Score=72.15  Aligned_cols=98  Identities=10%  Similarity=0.064  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCc
Q 025965          132 LLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~--~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ..++..+|.++..+| ++++++..+.++++..++      ...++.+.+.+....|+.  ++++.++.++++.      +
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~------d  138 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSL------D  138 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh------C
Confidence            335556677777666 467777777777776666      566667777777666653  5667777777776      6


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      +.+..++.+.|.++...|++++|+++++++|+.
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            667777777777777777777777777777764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.55  E-value=4.6e-06  Score=67.72  Aligned_cols=144  Identities=12%  Similarity=0.036  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+...........+.+.++..|.+.+...|.           .  .....+.+.+|.+|+..++|++|+..+++.++.+|
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-----------s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P  100 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPF-----------G--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP  100 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------C--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            3444455555556777888888888887764           2  23344577899999999999999999999999888


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHcCCcc-----------hHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQG---------------K---YREAIKYHSMVLQISEREGEYS-----------GSTEA  214 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g---------------~---~~~Ai~~~~~al~~~~~~~d~~-----------~~~~a  214 (245)
                      +..+   ...+++.+|.++...+               |   ..+|+..+++.++.+.+....+           ..+.-
T Consensus       101 ~~~~---~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866        101 THPN---IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             CCCc---hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            7544   5777888887764443               1   3567888888877755332111           12223


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      -..+|..|.+.|.|..|+..++..++.++
T Consensus       178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp  206 (243)
T PRK10866        178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYP  206 (243)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence            44689999999999999999999998764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.55  E-value=2.5e-06  Score=71.19  Aligned_cols=110  Identities=20%  Similarity=0.230  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-Ccc--
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYS--  209 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~-d~~--  209 (245)
                      .....+|..+.-++.|++++++|++|+.++.+++|+......+..+|..+....|+++|+.+..+|.++....+ ++.  
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            45566899999999999999999999999999999999999999999999999999999999999999988766 332  


Q ss_pred             -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          210 -GSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       210 -~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                       ....+++.++.++..+|..-.|.++.+++.++.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence             345568889999999999999999999998754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.54  E-value=1.1e-06  Score=82.71  Aligned_cols=97  Identities=19%  Similarity=0.223  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ++..+|..+...|++++|+..++++++..|.      ...+..++|.++...|++++|+..++++++.      .|....
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------~P~~~~  118 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSG------APDKAN  118 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH
Confidence            4566677888888888888888888877666      5566677788888888888888888887777      666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                       +..+|.++...|++++|...++++++...
T Consensus       119 -~~~la~~l~~~g~~~~Al~~l~~al~~~P  147 (765)
T PRK10049        119 -LLALAYVYKRAGRHWDELRAMTQALPRAP  147 (765)
T ss_pred             -HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence             77778888888888888888888777543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.54  E-value=2.4e-06  Score=67.54  Aligned_cols=107  Identities=18%  Similarity=0.176  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ....+..|..++..|+|.+|+..|++....+|.   +.....+...+|.+++..|+|++|+..+++.++.+   .+++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---P~~~~~   78 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---PNSPKA   78 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-TTH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence            447788899999999999999999998887665   44567788999999999999999999999988774   446667


Q ss_pred             HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhhc
Q 025965          212 TEAYGAIADCYTELG-----------DLERAARFYDKYISRLES  244 (245)
Q Consensus       212 ~~a~~~la~~y~~~g-----------~~~~A~~~y~~al~~~~~  244 (245)
                      ..+++.+|.++....           ...+|...++..++.+.+
T Consensus        79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            889999999976543           345788888888887654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=1.8e-07  Score=79.92  Aligned_cols=105  Identities=22%  Similarity=0.220  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      +...+.+..+.|++-+.+|++++|.+.|++|+.-...      -.++++|+|..+-.+|+.++|++.|-+...+      
T Consensus       486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas------c~ealfniglt~e~~~~ldeald~f~klh~i------  553 (840)
T KOG2003|consen  486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS------CTEALFNIGLTAEALGNLDEALDCFLKLHAI------  553 (840)
T ss_pred             cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------
Confidence            3445567778899999999999999999999875555      6788999999999999999999999998777      


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      -.+.+..+..++.+|..+.+..+|+++|.++.....+
T Consensus       554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~  590 (840)
T KOG2003|consen  554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN  590 (840)
T ss_pred             HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence            5567888999999999999999999999998776554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=4.8e-07  Score=77.99  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA---ARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a---~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ....++++|..|+..|+|++|+..|++|+++      ......+   ++|+|.+|..+|++++|+..+++|+++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4555555555555555555555555554442      2222212   455555555555555555555555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.51  E-value=3.6e-06  Score=68.35  Aligned_cols=105  Identities=11%  Similarity=0.014  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ..+..|..++..|+|++|+..|++.++.+|.   +.....+...+|.++++.++|++|+..+++.++.   ..+++....
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~---~P~~~~~~~  107 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CcCCCchHH
Confidence            4667799999999999999999999887664   4556677899999999999999999999999888   445677888


Q ss_pred             HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHhhc
Q 025965          214 AYGAIADCYTELG---------------D---LERAARFYDKYISRLES  244 (245)
Q Consensus       214 a~~~la~~y~~~g---------------~---~~~A~~~y~~al~~~~~  244 (245)
                      +++.+|.++..++               |   ..+|.+.++..++.+.+
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~  156 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN  156 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence            9999999875554               2   24677888888877653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.50  E-value=5.6e-06  Score=60.78  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..++..|...+..|+|++|++.++....-+|   -......+...+|.+|+..++|++|+..+++-|++   +..++...
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL---hP~hp~vd   84 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL---HPTHPNVD   84 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCCCcc
Confidence            3667789999999999999999998766444   34556688899999999999999999999999988   44566788


Q ss_pred             HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHhhc
Q 025965          213 EAYGAIADCYTELGD---------------LERAARFYDKYISRLES  244 (245)
Q Consensus       213 ~a~~~la~~y~~~g~---------------~~~A~~~y~~al~~~~~  244 (245)
                      .+++..|.++..+.+               ..+|...+++.++.+.+
T Consensus        85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence            899999999999877               78999999998887754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.50  E-value=1e-06  Score=69.35  Aligned_cols=87  Identities=18%  Similarity=0.246  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HH
Q 025965          145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YT  223 (245)
Q Consensus       145 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~-y~  223 (245)
                      .++.++++..++++++..|+      ...++..+|.++...|++++|+..|++++++      .|..+..+.++|.+ |.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Confidence            46778999999999999988      8889999999999999999999999999999      88889999999997 47


Q ss_pred             HcCC--HHHHHHHHHHHHHHhh
Q 025965          224 ELGD--LERAARFYDKYISRLE  243 (245)
Q Consensus       224 ~~g~--~~~A~~~y~~al~~~~  243 (245)
                      ..|+  +++|.+.++++++.-.
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP  141 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDA  141 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCC
Confidence            7787  5999999999998644

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.49  E-value=7.3e-07  Score=65.39  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 025965          153 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  232 (245)
Q Consensus       153 ~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~  232 (245)
                      +.++++++..|+      ...+...+|..+...|++++|+..+++++..      .|....++.++|.+|...|++++|.
T Consensus         4 ~~~~~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~   71 (135)
T TIGR02552         4 ATLKDLLGLDSE------QLEQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAI   71 (135)
T ss_pred             hhHHHHHcCChh------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            357778777776      6778899999999999999999999999888      7778899999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 025965          233 RFYDKYISRLE  243 (245)
Q Consensus       233 ~~y~~al~~~~  243 (245)
                      .+++++++...
T Consensus        72 ~~~~~~~~~~p   82 (135)
T TIGR02552        72 DAYALAAALDP   82 (135)
T ss_pred             HHHHHHHhcCC
Confidence            99999987643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.48  E-value=1.5e-06  Score=81.38  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ...++..|.+++..++++++.-.  .++...+.             +++......+++++|.+|-++|++++|...|+++
T Consensus        65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~  142 (906)
T PRK14720         65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL  142 (906)
T ss_pred             eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44666778888888887777654  44433332             2223335578999999999999999999999999


Q ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +++      +|..+.+++++|..|... ++++|.+++.+|+.++
T Consensus       143 L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        143 VKA------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             Hhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            999      799999999999999999 9999999999999865

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.44  E-value=1e-06  Score=81.20  Aligned_cols=103  Identities=18%  Similarity=0.142  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+++...+|.++...|++.+|...|.+..+-...      ...++.|+|++|..+|+|..|+..|+.+++.+-    ..+
T Consensus       645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~----~~~  714 (1018)
T KOG2002|consen  645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY----KKN  714 (1018)
T ss_pred             hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC
Confidence            5677888999999999999999999998876665      567789999999999999999999999988765    334


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ....+..||++++..|++.+|.++..+|+....
T Consensus       715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            567889999999999999999999999987654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.44  E-value=6.2e-06  Score=63.34  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=63.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .++......+++++|..+...|++++|+.+|+++++...   +.+....++.++|.+|...|++++|..+|+++++..
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  102 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN  102 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            445555778899999999999999999999999998733   223346789999999999999999999999999864

>TIGR00540 hemY_coli hemY protein

Probab=98.44  E-value=1.9e-05  Score=69.15  Aligned_cols=97  Identities=16%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .++..|.++..+|+++.|..+++++.+..+.   ..  ..+....+.++...|++++|...+++.++.      .|..+.
T Consensus       120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~---~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~  188 (409)
T TIGR00540       120 NLIKAAEAAQQRGDEARANQHLEEAAELAGN---DN--ILVEIARTRILLAQNELHAARHGVDKLLEM------APRHKE  188 (409)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH
Confidence            4556799999999999999999999876554   11  123334588999999999999999999888      788888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ++..++.+|...||+++|.+.+.+..+.
T Consensus       189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       189 VLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            9999999999999999999999888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=7e-07  Score=73.53  Aligned_cols=66  Identities=9%  Similarity=0.117  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .+.++|+|.++.-.++++-++..|.+|+..+.+   +...++.|+|+|.+....||+.-|..+++-++.
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~  423 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT  423 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence            444556666666666666666666666665442   223455666666666666666666666665553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.43  E-value=1.2e-05  Score=61.55  Aligned_cols=103  Identities=12%  Similarity=0.048  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .....+.......+.+.++..+.+++...+.             ......++.++|.++...|++++|+..+++++++.+
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP  103 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            3444444444555777888888888775432             122345788899999999999999999999999876


Q ss_pred             hCCChHHHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHc
Q 025965          164 NVKDPIEEKKAARGLGASLQ-------RQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~-------~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      .      ....+.++|.++.       ..|++++|+..+.+++..+++.
T Consensus       104 ~------~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        104 F------LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             C------cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            6      3344455555555       9999999999999988887764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.42  E-value=2.2e-05  Score=64.76  Aligned_cols=103  Identities=20%  Similarity=0.257  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ..-+..+..++..+....+.+.|...+.+|++..++      -..+-.-+|.+....|+|+.|++.++.+++-     |.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~  245 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQ-----NP  245 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHh-----Ch
Confidence            345666678899999999999999999999999888      7788888999999999999999999998876     33


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ...+.+...+-.||..+|+.++...+..++.+..
T Consensus       246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            3467788889999999999999999999988754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.42  E-value=1.7e-05  Score=76.18  Aligned_cols=113  Identities=14%  Similarity=0.046  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc--
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY--  208 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~--  208 (245)
                      ...+...+|.++...|++++|...+++++......++......++.++|.++...|++++|...+.+++.+....+..  
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            445666789999999999999999999999999888888888889999999999999999999999999998876532  


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.....+..+|.++...|++++|...+.+++....
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            33344567889999999999999999999887643

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=3e-05  Score=61.21  Aligned_cols=147  Identities=12%  Similarity=0.144  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  161 (245)
Q Consensus        83 ~~l~~~~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  161 (245)
                      ..+..+........ ...++-..|.++-+....+          ++...-+..+...+.+|. ..++.+|+...++++++
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~----------~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieI  102 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKA----------GSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEI  102 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc----------CCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHH
Confidence            34444444444433 4444555666666665442          444444555555555555 46999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          162 AQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       162 ~~~~~d~~~~~~a~~~lg~~~~~~-g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      +.+.+.....+.-+..+|.+|-.- .++++||.+|+++-+.++..........++.-.|..-..+++|.+|+..|++...
T Consensus       103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888889999999664 8999999999999999887665555666778888888899999999999988764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.41  E-value=1.8e-06  Score=56.30  Aligned_cols=57  Identities=25%  Similarity=0.382  Sum_probs=46.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ..+|...+++++|...+++++.+.|.      ....+...|.++..+|++++|+..++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677888888888888888888777      7777888888888888888888888888877

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.40  E-value=0.00011  Score=56.62  Aligned_cols=102  Identities=25%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      -....+.++..+...+++++|...++.++.   ..+|......+-..++.+...+|.+++|+..+...       .++..
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w  157 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESW  157 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccH
Confidence            445667789999999999999999999876   34566677778889999999999999999877663       22334


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+..-...|+++..+|+.++|...|+++++..
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            45556778999999999999999999999874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.40  E-value=9.3e-07  Score=56.80  Aligned_cols=65  Identities=23%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 025965          143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  219 (245)
Q Consensus       143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la  219 (245)
                      ...|++++|+..|+++++..|+      ...+...+|.++...|++++|...+++++..      .|..+..+..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ------DPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG------GTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCHHHHHHHHh
Confidence            4567888888888888887777      6777778888888888888888888887666      555455544444

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.39  E-value=1.5e-06  Score=56.65  Aligned_cols=60  Identities=20%  Similarity=0.256  Sum_probs=55.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          179 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       179 g~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ..++.+.++|++|++++++++.+      +|..+..+...|.+|..+|++++|.+.++++++..++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            56889999999999999999999      8888999999999999999999999999999987543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.39  E-value=2.8e-06  Score=70.48  Aligned_cols=102  Identities=24%  Similarity=0.264  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      .+.++.-.+.+|..++..|++..|+..|-.|++..|+      ...+++..|.+|..+|+-.-|+..+.++|++      
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------  101 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLEL------  101 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhc------
Confidence            3446667888999999999999999999999999998      8899999999999999999999999999999      


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .|+...+....|.+..++|++++|...|++.++.
T Consensus       102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~  135 (504)
T KOG0624|consen  102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH  135 (504)
T ss_pred             CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999874

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.39  E-value=7.4e-06  Score=62.48  Aligned_cols=163  Identities=12%  Similarity=0.123  Sum_probs=101.7

Q ss_pred             chhHHHHHHHHHHHHhhchhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHH
Q 025965           55 FNMPLLLFVALIGATVGGLLARQRRGELQ-RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELL  133 (245)
Q Consensus        55 ~~~~~~~~i~l~g~~~~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  133 (245)
                      +.+.+++...++|+++.+...--.....+ .-...+....+.++.+.......+.++.++.                 ..
T Consensus        28 YWlfIif~Fp~iG~VaYfvav~LPEl~~~R~a~~~~~a~~q~ldP~R~~Rea~~~~~~ApT-----------------vq   90 (251)
T COG4700          28 YWLFIIFCFPVIGCVAYFVAVMLPELGADRHAHTLLMALQQKLDPERHLREATEELAIAPT-----------------VQ   90 (251)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhhHhcccchhHHHHHHHHHhcChhHHHHHHHHHHhhchh-----------------HH
Confidence            44555556666777655433221111111 1112223333344455555555555555553                 22


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      -.+.+|......|++.+|..+|++++.     +-.......+.+++......+++..|...+++..+...    ....++
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p----a~r~pd  161 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP----AFRSPD  161 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----ccCCCC
Confidence            345678888888999999999998865     11112455677888888888999988888888766621    123455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+..+|++|...|.+.+|...++.+++.+.
T Consensus       162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         162 GHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             chHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            677788889899998888888888887653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.2e-06  Score=76.13  Aligned_cols=94  Identities=20%  Similarity=0.280  Sum_probs=87.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      ..|+..+..|+|+.|+.+|..|+.+.|.      ....|.|...+|..+|+|++|+..-.+..++      .|..+..|.
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l------~p~w~kgy~   74 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRL------NPDWAKGYS   74 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhc------CCchhhHHH
Confidence            4588999999999999999999999887      6667888999999999999999999999999      999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          217 AIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..|....-+|+|++|...|.+.++.-
T Consensus        75 r~Gaa~~~lg~~~eA~~ay~~GL~~d  100 (539)
T KOG0548|consen   75 RKGAALFGLGDYEEAILAYSEGLEKD  100 (539)
T ss_pred             HhHHHHHhcccHHHHHHHHHHHhhcC
Confidence            99999999999999999999998754

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.39  E-value=2.3e-05  Score=61.87  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      +.+...+......++...++..+.+.+...|.           .+.  ...+.+.+|.+++..|++++|+..+++.++.+
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----------s~~--a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----------SPY--APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----------STT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------ChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            35666677777777888888888888888775           332  23366778999999999999999999999988


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCcc-----------hHHHHHHHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQISEREGEYS-----------GSTEAYGAIAD  220 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~-----------g~~~~Ai~~~~~al~~~~~~~d~~-----------~~~~a~~~la~  220 (245)
                      |+...   ...+++.+|.++..+           +...+|+..|+..++.+......+           ..+.--..+|.
T Consensus        73 P~~~~---~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~  149 (203)
T PF13525_consen   73 PNSPK---ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR  149 (203)
T ss_dssp             TT-TT---HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcc---hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87443   567778888876554           334578888888887755432211           12233455899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHhh
Q 025965          221 CYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       221 ~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .|.+.|.+..|...++.+++.+.
T Consensus       150 ~Y~~~~~y~aA~~r~~~v~~~yp  172 (203)
T PF13525_consen  150 FYYKRGKYKAAIIRFQYVIENYP  172 (203)
T ss_dssp             HHHCTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHcccHHHHHHHHHHHHHHCC
Confidence            99999999999999999998765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.38  E-value=2.7e-06  Score=57.21  Aligned_cols=60  Identities=22%  Similarity=0.255  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ....+.+|.+|+..|+|++|+..+++ .+..+.      ...+...+|.++..+|+|++|++.++++
T Consensus        25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            33566689999999999999999999 666666      6677778899999999999999999875

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.36  E-value=8.6e-05  Score=52.39  Aligned_cols=111  Identities=20%  Similarity=0.208  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-----h-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----P-IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-----~-~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      ..+.-|.-....|-|++|...+++|+++.+++..     + -..+.++..|+.++...|+|++++..-.+++.++.+.|+
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE   90 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE   90 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence            3344566667779999999999999999988753     2 236778889999999999999999999999999998764


Q ss_pred             cc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          208 YS-----GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       208 ~~-----~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      -.     ....+.++.|..+..+|..++|...|+++-+.+.+
T Consensus        91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            22     23446788999999999999999999999887653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.35  E-value=1.1e-06  Score=72.82  Aligned_cols=94  Identities=12%  Similarity=0.166  Sum_probs=87.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  215 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~  215 (245)
                      -..|+-|+.+|+|++|++.|.+++.+++.      ....+.|.+.+|.+++.+..|...+..|+.+      +.....+|
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAY  168 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAY  168 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHH
Confidence            46799999999999999999999999986      6777889999999999999999999999999      77888999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          216 GAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       216 ~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ...|.+-..+|...+|.+.|+.++++
T Consensus       169 SRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  169 SRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            99999999999999999999999875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.34  E-value=5e-06  Score=76.86  Aligned_cols=104  Identities=19%  Similarity=0.255  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      ....+.+++++|..|..+|+|++|..+|.+++...++.     ....+.++|..+...|++++|+..|+++++.      
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~------  371 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ------  371 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHh------
Confidence            34566778888999999999999999999888766651     2566788899999999999999999988877      


Q ss_pred             cchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHh
Q 025965          208 YSGSTEAYGAIADCYTELG----DLERAARFYDKYISRL  242 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g----~~~~A~~~y~~al~~~  242 (245)
                      .|+...+...+|.+|...+    ..++|..+..+++...
T Consensus       372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            7777777777888887765    4566666666666543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.32  E-value=5.7e-05  Score=65.94  Aligned_cols=94  Identities=14%  Similarity=0.086  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA-ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a-~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ++..+.....+|+++.|..+++++.+..++      ...+ ....+..+...|++++|+..+++..+.      .|..+.
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~  188 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADN------DQLPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPE  188 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHH
Confidence            444577779999999999999999876554      2222 223488999999999999999999888      788889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ++..++.+|...||+++|.+.+.+..+
T Consensus       189 al~ll~~~~~~~gdw~~a~~~l~~l~k  215 (398)
T PRK10747        189 VLRLAEQAYIRTGAWSSLLDILPSMAK  215 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999988877664

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.29  E-value=3.5e-05  Score=63.56  Aligned_cols=67  Identities=13%  Similarity=0.085  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..++..|+.++..+....+.+.|+..+.+|++.      +|....+-..+|+++...|+|++|.+.++.+++.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ  243 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ  243 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence            346677888999998889999999999999888      7878888888999999999999999999888764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=3.4e-06  Score=69.60  Aligned_cols=100  Identities=20%  Similarity=0.190  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .+.++|.+.+..+++|-++..|++|+..+..   +...+..++|+|.+....||+.-|-..|+-++.-      ++....
T Consensus       360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~e  430 (478)
T KOG1129|consen  360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGE  430 (478)
T ss_pred             HHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHH
Confidence            4567899999999999999999999986653   4446788999999999999999999999999876      788899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +++|+|.+-...|+.++|..+++.|-+..
T Consensus       431 alnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  431 ALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            99999999999999999999999887653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.27  E-value=1.4e-06  Score=55.95  Aligned_cols=55  Identities=27%  Similarity=0.450  Sum_probs=49.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          183 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       183 ~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...|+|++|+..|++++..      .|....++..+|.+|...|++++|...+++++...+
T Consensus         2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            5789999999999999998      888899999999999999999999999998876543

...

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=9.4e-05  Score=58.85  Aligned_cols=119  Identities=15%  Similarity=0.079  Sum_probs=100.0

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      .|....+..+...+..|...++|++|...+.+|.+.+++.......+.++...|........+.|+..+|++|..++.+.
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            34444555666778889999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  245 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~~  245 (245)
                      |....-+.++..-|.+.. .-+.++|++.|++++.+++++
T Consensus       105 GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             CCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhcc
Confidence            976666666666666555 458999999999999988753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.26  E-value=1.3e-05  Score=68.58  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=75.4

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  218 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l  218 (245)
                      +..+...|++..+.....++++.  ..........+...+|.++..+|++++|+..+++++++      .|....++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~l  154 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAV  154 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHH
Confidence            55566666665555555555543  22333335667778999999999999999999999998      67778889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          219 ADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       219 a~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      |.+|...|++++|..+++++++..
T Consensus       155 a~i~~~~g~~~eA~~~l~~~l~~~  178 (355)
T cd05804         155 AHVLEMQGRFKEGIAFMESWRDTW  178 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHhhhhcc
Confidence            999999999999999999998754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.26  E-value=6.6e-06  Score=74.38  Aligned_cols=100  Identities=24%  Similarity=0.228  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcCCcc
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEYS  209 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~--~~~~al~~~~~~~d~~  209 (245)
                      ...++..|..+...|+..+|...|..|+.+.|+      ...+...+|.++.+.|+..-|..  ....++++      +|
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------dp  751 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRL------DP  751 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------CC
Confidence            445677889999999999999999999999998      88888999999999999888888  99999999      99


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+..+|+++|.++..+||.++|.++|+.|++.-+
T Consensus       752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999998643

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.25  E-value=2.1e-05  Score=67.65  Aligned_cols=128  Identities=19%  Similarity=0.203  Sum_probs=100.0

Q ss_pred             HHHHHHHH-HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC
Q 025965           89 LRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD  167 (245)
Q Consensus        89 ~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d  167 (245)
                      +..++..+ ...++|+.|.++.+..|.           +|.     .+..+|..|-+.|+-..|..++-...+..|.   
T Consensus       564 ianiye~led~aqaie~~~q~~slip~-----------dp~-----ilskl~dlydqegdksqafq~~ydsyryfp~---  624 (840)
T KOG2003|consen  564 IANIYELLEDPAQAIELLMQANSLIPN-----------DPA-----ILSKLADLYDQEGDKSQAFQCHYDSYRYFPC---  624 (840)
T ss_pred             HHHHHHHhhCHHHHHHHHHHhcccCCC-----------CHH-----HHHHHHHHhhcccchhhhhhhhhhcccccCc---
Confidence            44444444 556777777777777664           332     4556789999999999999888777778777   


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                         ..+....+|..|....-+++||.||+++--+      .|....-...++.|+...|+|++|.+.|+..-..+.+
T Consensus       625 ---nie~iewl~ayyidtqf~ekai~y~ekaali------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  625 ---NIETIEWLAAYYIDTQFSEKAINYFEKAALI------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             ---chHHHHHHHHHHHhhHHHHHHHHHHHHHHhc------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence               6777778888888888899999999998777      7777776777899999999999999999887776654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.25  E-value=0.00012  Score=54.58  Aligned_cols=100  Identities=17%  Similarity=0.053  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +...+.........++...+...+++..+   +.+++.....+...+|.++...|++++|+..|++++..   ..++...
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~   84 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELK   84 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHH
Confidence            33444445555568899888877777555   55566677888999999999999999999999999875   3444556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                      ..+...+|.++...|++++|...++.
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            77899999999999999999999865

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.25  E-value=1e-05  Score=57.48  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025965           90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  169 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~  169 (245)
                      .......+.+.++..+.+.+...+.           .  .....+.+.+|.++...|++++|+..+++++...|..   .
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~-----------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~   73 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPK-----------S--TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---P   73 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-----------c--cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---C
Confidence            3333344556666666666654432           1  1123467778999999999999999999999876542   2


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ....++..+|.++...|++++|+.+++++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            23567889999999999999999999999888

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.24  E-value=2.7e-06  Score=73.40  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ...+++|+|.++..+|+|++|+..|++++++.....+   ...+|+|+|.+|..+|++++|+.++++|++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae---A~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE---AQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6788999999999999999999999999999888432   2357999999999999999999999999986

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.24  E-value=4.7e-05  Score=65.81  Aligned_cols=91  Identities=19%  Similarity=0.276  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ....++.++...++..+|+....+++...|.      ....+...+..+...++|+.|+...+++.+.      .|....
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~  269 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFE  269 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHH
Confidence            3445688888999999999999999976665      4777888899999999999999999999999      899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYD  236 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~  236 (245)
                      +|+.++.+|..+||+++|....+
T Consensus       270 ~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  270 TWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHh
Confidence            99999999999999999987665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN02789 farnesyltranstransferase

Probab=98.22  E-value=6.4e-05  Score=63.49  Aligned_cols=100  Identities=13%  Similarity=0.032  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          132 LLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~--~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      ..++..++.+....|+.  ++++.+++++++..++      ...++.+.|.+....|+|++|++++.++|+.      ++
T Consensus       106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~  173 (320)
T PLN02789        106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------DV  173 (320)
T ss_pred             hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CC
Confidence            33577778888888874  6789999999999988      8899999999999999999999999999999      88


Q ss_pred             hHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~---g~~----~~A~~~y~~al~~~~  243 (245)
                      ....++++.+.+....   |.+    +++.++..++|....
T Consensus       174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P  214 (320)
T PLN02789        174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP  214 (320)
T ss_pred             CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC
Confidence            8899999999998776   333    578888889887653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.22  E-value=2.1e-05  Score=74.14  Aligned_cols=100  Identities=7%  Similarity=0.049  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ........|..|..+|++++|++.|+++++..|+      ...++..++..+...+++++|+..++++.+.      ++.
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------dp~  168 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAER------DPT  168 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc------Ccc
Confidence            3445666688999999999999999999998887      6677778889999999999999999998776      554


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ... +..++.++...++..+|++.|+++++...
T Consensus       169 ~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P  200 (822)
T PRK14574        169 VQN-YMTLSYLNRATDRNYDALQASSEAVRLAP  200 (822)
T ss_pred             hHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence            332 34455556567777779999999998754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.22  E-value=1.8e-05  Score=72.71  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+...+..|+..+..|++++|...+.+++...+.      ...++..||.+|..+||.++++.....|-.+      +|.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~  205 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------NPK  205 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhc------CCC
Confidence            4667788899999999999999999999999998      8999999999999999999999999888877      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...-|..++....++|.+++|.-+|.+||+.-.
T Consensus       206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p  238 (895)
T KOG2076|consen  206 DYELWKRLADLSEQLGNINQARYCYSRAIQANP  238 (895)
T ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence            778888999999999999999999999998643

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.21  E-value=2.8e-05  Score=67.18  Aligned_cols=96  Identities=23%  Similarity=0.230  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      .+.....+.++...++.++|.+.+++++.+.|.      ......++|.++...|++++|+..++..+.-      +|..
T Consensus       340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~------~p~d  407 (484)
T COG4783         340 PYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFN------DPED  407 (484)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCCC
Confidence            344556799999999999999999999999988      6777889999999999999999999998665      7777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      +..|..+|.+|..+|+..+|...+.+..
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            8888888888888888777666555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.21  E-value=3.5e-05  Score=70.87  Aligned_cols=135  Identities=18%  Similarity=0.170  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      ++..+..+.......++.+.+.......|...|.                ...++..+|.+|-.+|+.+++......|--
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH  201 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH  201 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----------------chhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            4556666666666667778888888888887665                244778889999999999999999888777


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      +.|+      ...-+..++.....+|++++|.-+|.+||+.      .|......+..+.+|.+.|++..|...|.+.++
T Consensus       202 L~p~------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~  269 (895)
T KOG2076|consen  202 LNPK------DYELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ  269 (895)
T ss_pred             cCCC------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence            6665      4466677888899999999999999999999      888888999999999999999999999999887


Q ss_pred             Hhh
Q 025965          241 RLE  243 (245)
Q Consensus       241 ~~~  243 (245)
                      ...
T Consensus       270 ~~p  272 (895)
T KOG2076|consen  270 LDP  272 (895)
T ss_pred             hCC
Confidence            653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.20  E-value=0.00015  Score=60.43  Aligned_cols=158  Identities=16%  Similarity=0.208  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc------------------cCCCccccccCChHHHHHHHHHHH
Q 025965           78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG------------------SRIPEDEVIVDPKKEELLSRLKTG  139 (245)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~g  139 (245)
                      .+.++++..+.+.++....+...++..|..+++..|..                  ..+........-.+.-+.+....|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            34555666666666666666666666666666554431                  111111112223334455667789


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhCCChH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          140 KNFLRNQDLEKAFTEFKAALELAQNVKDPI---------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~---------~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .++..+|+++.|...|...+...++.+...         ...+.+......+...||+..|+++..+.|++      .|.
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~W  187 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI------QPW  187 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc------Ccc
Confidence            999999999999999999887665422111         12233445556677788899999998888888      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+..+...+.||...|+..+|+...+.+-..
T Consensus       188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askL  218 (504)
T KOG0624|consen  188 DASLRQARAKCYIAEGEPKKAIHDLKQASKL  218 (504)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            8888888999999999999999888777554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=8.2e-06  Score=71.64  Aligned_cols=115  Identities=17%  Similarity=0.272  Sum_probs=87.3

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      .++.+++.|+.++..-|.                ....+..+|-..-.-.+..+|+..|.+|+++-|.      ..++.+
T Consensus       445 efdraiDcf~~AL~v~Pn----------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~------yVR~Ry  502 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPN----------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG------YVRVRY  502 (579)
T ss_pred             HHHHHHHHHHHHHhcCCc----------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC------eeeeeh
Confidence            566666777777665543                4557888899999999999999999999999999      899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---cc-hHHHHHHHHHHHHHHcCCHHHHHH
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGE---YS-GSTEAYGAIADCYTELGDLERAAR  233 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d---~~-~~~~a~~~la~~y~~~g~~~~A~~  233 (245)
                      |+|.++..+|.|++|+++|-.||.+-++...   .+ ..-..+..|=.+....+..|-+..
T Consensus       503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            9999999999999999999999999877322   11 112344444455555555554433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.9e-05  Score=65.18  Aligned_cols=109  Identities=18%  Similarity=0.266  Sum_probs=97.4

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      +.....+.-+-.-|+-|+..++|..|...|.+++.  .+..|+...+..|.|.+.+....|+|..|+..+.+|+.+    
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            44444666666789999999999999999999865  688999999999999999999999999999999999999    


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                        +|....+++.=|.|+..+..++.|..+++..+.+.
T Consensus       149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence              99999999999999999999999999988877654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.18  E-value=0.00013  Score=70.23  Aligned_cols=116  Identities=17%  Similarity=0.131  Sum_probs=94.2

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~--~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      ++..........+|.++...|++++|...+++++++....+..  ......+..+|.++...|++++|...+.+++.+.+
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            3444456677788999999999999999999999998875432  22334466789999999999999999999999877


Q ss_pred             HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+ ......++..+|.++...|++++|...+.++....
T Consensus       605 ~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        605 NYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             ccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            554 33456678889999999999999999999987754

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=7.6e-05  Score=58.97  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..+..-|+.|...++++.|-..|.++-++.-..++....+.+|...+.+|.+ +++.+|+..++++++++...|.-..-
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~a  112 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMA  112 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34455668888888999999999999999998888877788888888877755 59999999999999999988866566


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhc
Q 025965          212 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES  244 (245)
Q Consensus       212 ~~a~~~la~~y~~~-g~~~~A~~~y~~al~~~~~  244 (245)
                      +.-+..||..|..- .++++|+.+|+++-+.+..
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            67788899999854 9999999999999887753

>TIGR00540 hemY_coli hemY protein

Probab=98.17  E-value=3e-05  Score=67.94  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHcCCcchHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK--KAARGLGASLQRQGKYREAIKYHSM--VLQISEREGEYSGSTEA  214 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~--~a~~~lg~~~~~~g~~~~Ai~~~~~--al~~~~~~~d~~~~~~a  214 (245)
                      .......++.+.+....+++++..|+      ..  ..+..+|.++.+.|+|++|.++|++  +++.      .|+... 
T Consensus       306 ~~~~l~~~~~~~~~~~~e~~lk~~p~------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~------~p~~~~-  372 (409)
T TIGR00540       306 PIPRLKPEDNEKLEKLIEKQAKNVDD------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE------QLDAND-  372 (409)
T ss_pred             HhhhcCCCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc------CCCHHH-
Confidence            34444457788888888888877666      55  6778899999999999999999995  5554      555444 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +..+|.++..+|+.++|.++|++++...
T Consensus       373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       373 LAMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            5589999999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.17  E-value=6e-05  Score=51.86  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=69.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965          142 FLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  218 (245)
Q Consensus       142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~---~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l  218 (245)
                      ....|+|..|.+.+.+..+.........   ....+..++|......|++++|+..++++++++++.+|......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4567999999999999999888766655   5677889999999999999999999999999999999988877777666


Q ss_pred             HHHH
Q 025965          219 ADCY  222 (245)
Q Consensus       219 a~~y  222 (245)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            6543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.14  E-value=1.2e-05  Score=53.61  Aligned_cols=64  Identities=30%  Similarity=0.443  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++.++|..+..+|++++|+..++++++.      .+....++..+|.++...|++++|.++++++++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4678999999999999999999999887      555567899999999999999999999999987543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.13  E-value=5.8e-05  Score=65.87  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=74.0

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965          144 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  223 (245)
Q Consensus       144 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~  223 (245)
                      ..+++++++...++.++..|+      ....+..+|..+...+++++|.++|+++++.      .|... .+..++.++.
T Consensus       306 ~~~~~~~al~~~e~~lk~~P~------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------~P~~~-~~~~La~~~~  372 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQHGD------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------RPDAY-DYAWLADALD  372 (398)
T ss_pred             cCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHH-HHHHHHHHHH
Confidence            447888888888887777776      6777889999999999999999999999988      66654 4668999999


Q ss_pred             HcCCHHHHHHHHHHHHHHh
Q 025965          224 ELGDLERAARFYDKYISRL  242 (245)
Q Consensus       224 ~~g~~~~A~~~y~~al~~~  242 (245)
                      ..|+.++|.++|++++...
T Consensus       373 ~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        373 RLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HcCCHHHHHHHHHHHHhhh
Confidence            9999999999999998765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.12  E-value=5.7e-05  Score=61.96  Aligned_cols=90  Identities=13%  Similarity=0.093  Sum_probs=73.6

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      .++..++..|...+...|.           .+  ....+++++|.+|+..|++++|+..|+++++.+|+   ......++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~-----------s~--~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---s~~~~dAl  220 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPD-----------ST--YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---SPKAADAM  220 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcC-----------Cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhHHH
Confidence            3566777777777777764           11  12346788999999999999999999999887664   45577889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ..+|.++..+|++++|...|+++++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999887

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.09  E-value=6.4e-05  Score=67.52  Aligned_cols=64  Identities=19%  Similarity=0.130  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..++.-+|......|++++|...+++|+.+      .++ +.+|..+|.++...|++++|.+.|++|+..-
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            466777888888999999999999999999      664 6799999999999999999999999998753

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.05  E-value=0.00025  Score=51.15  Aligned_cols=100  Identities=18%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+.-++......++-..+++.|.+++...|.                .+.++++.+..+..+|+.++|++..++|++++.
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence            3444555666666788899999999999876                456888999999999999999999999999875


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .-  +.....++...|.+|+.+|+-+.|-..|+.+-++
T Consensus       109 ~~--trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  109 DQ--TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             cc--chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            43  4446778899999999999999999999988765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=1.7e-05  Score=62.67  Aligned_cols=97  Identities=9%  Similarity=0.056  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      +...|+.++....|+.|+..|.+|+.+.|.      .+..+.|.+.++....+++...+..++++++      .++...+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk~   80 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVKA   80 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHHH
Confidence            345688888889999999999999999998      7788889999999999999999999999999      9999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++.+|.+......++.|+..++++.+...
T Consensus        81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r  109 (284)
T KOG4642|consen   81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLR  109 (284)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999987654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=1.3e-05  Score=62.61  Aligned_cols=100  Identities=16%  Similarity=0.062  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ..++..++..|..|-..|-...|.-.|.+++.+.|+      .+.+++.+|..+...|+|+.|.+.|...+++      +
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------D  129 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------D  129 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhcc------C
Confidence            446778888999999999999999999999999999      8999999999999999999999999999999      8


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      |..-.++.|.|..++--|.++-|.+.+.+-.+
T Consensus       130 p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785         130 PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             CcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence            88888999999999999999999887765543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=0.00034  Score=55.97  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 025965          140 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  219 (245)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la  219 (245)
                      -+...+|+.-+|++....-++.+..      ..+++..++.+|...|+|++|.-.+++.+=+      .|-.+..+..+|
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rla  195 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLA  195 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHH
Confidence            3455678888999999999999888      8999999999999999999999999999887      888888889999


Q ss_pred             HHHHHcC---CHHHHHHHHHHHHHHhh
Q 025965          220 DCYTELG---DLERAARFYDKYISRLE  243 (245)
Q Consensus       220 ~~y~~~g---~~~~A~~~y~~al~~~~  243 (245)
                      .+++-+|   +++-|.+||.++++...
T Consensus       196 e~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  196 EVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            9988776   46789999999998764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.97  E-value=7e-05  Score=53.83  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+.+++|.++-..|+.++|+.+|++++..   .-+.+....++..+|.++..+|++++|...+++++..+.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            46788999999999999999999999875   223445677999999999999999999999999987654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=0.00011  Score=63.71  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .....+..+..++..|++++|...+...+...|+      ..+...-.|.++...++.++|++.+++++..      +|+
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~  372 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALAL------DPN  372 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCC
Confidence            3446777888899999999999999987776665      6777778999999999999999999999999      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ......++|.+|.+.|++++|+...+..+....
T Consensus       373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            788899999999999999999999988876543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.92  E-value=0.00044  Score=54.98  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=78.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CC----cchHHHHHH
Q 025965          145 NQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE---GE----YSGSTEAYG  216 (245)
Q Consensus       145 ~g~~~~A~~~~~~al~l~~~~~-d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~---~d----~~~~~~a~~  216 (245)
                      ..++++|++.|.-|+-.+...+ ++...+..+..+++.|..+|+.+....++++|++.+++.   .+    ..+.....+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            3578889999888888877655 455578889999999999999888888888888877763   12    224566888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          217 AIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+|.++...|++++|..+|.+.+..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            9999999999999999999998864

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.91  E-value=3.2e-05  Score=69.75  Aligned_cols=96  Identities=20%  Similarity=0.247  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +....|...+.+++|.++.++++.++++.+-      ....++++|.+....++++.|..+|.....+      +|+...
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~e  554 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAE  554 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchh
Confidence            4444566667789999999999999999887      7888999999999999999999999999998      899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      +++|++.+|...|+..+|...+++|++.
T Consensus       555 aWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  555 AWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             hhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            9999999999999999999999998864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.00024  Score=60.45  Aligned_cols=105  Identities=18%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      .++...+++.+....+....+.+.|..+|...|.            .....+..+.++|.+..+.|+..+|+...+.|+.
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~  315 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALK  315 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence            3344455566666666667777888888887664            2334567788999999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      +.+.      ..+++...|.++...++|++|+++|+++++.-.
T Consensus       316 iD~s------yikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  316 IDSS------YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             cCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999      999999999999999999999999999998743

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.87  E-value=0.00075  Score=60.55  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=84.4

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      .+......+++.++..|...|++++|+.+.++|++..|+      ..+.+...|.++-+.|++++|.+.+..|-.+    
T Consensus       188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L----  257 (517)
T PF12569_consen  188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEAREL----  257 (517)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC----
Confidence            455566788899999999999999999999999999988      8899999999999999999999999999877    


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                        +...-..-...+..+...|+.++|.+....
T Consensus       258 --D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~  287 (517)
T PF12569_consen  258 --DLADRYINSKCAKYLLRAGRIEEAEKTASL  287 (517)
T ss_pred             --ChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence              444434444457777889999999876543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.84  E-value=2e-05  Score=43.26  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025965          195 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  233 (245)
Q Consensus       195 ~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~  233 (245)
                      |+++|++      +|+.+.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            7889999      99999999999999999999999963

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.82  E-value=0.00022  Score=54.29  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965          148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG----------KYREAIKYHSMVLQISEREGEYSGSTEAYGA  217 (245)
Q Consensus       148 ~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g----------~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~  217 (245)
                      |+.|.+.++......|.      ....+++=|.++..+.          -+++|+.-|++||.+      +|...+++++
T Consensus         7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~   74 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWC   74 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHH
Confidence            56777777777777776      5666666666655543          367788888888888      8999999999


Q ss_pred             HHHHHHHcC----CHHHHHHHHHHHHHHhh
Q 025965          218 IADCYTELG----DLERAARFYDKYISRLE  243 (245)
Q Consensus       218 la~~y~~~g----~~~~A~~~y~~al~~~~  243 (245)
                      +|.+|..++    |..+|.++|++|.+.++
T Consensus        75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq  104 (186)
T PF06552_consen   75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQ  104 (186)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence            999998655    44566666666665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK11906 transcriptional regulator; Provisional

Probab=97.81  E-value=0.00039  Score=60.41  Aligned_cols=83  Identities=13%  Similarity=0.013  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965          147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  226 (245)
Q Consensus       147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g  226 (245)
                      +-.+|.+..++|+++.+.      .+.++..+|.+....++++.|+..|++|+.+      +|+.+.+++..|.+....|
T Consensus       319 ~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G  386 (458)
T PRK11906        319 AAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNE  386 (458)
T ss_pred             HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcC
Confidence            345667788889888888      8999999999999999999999999999999      9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 025965          227 DLERAARFYDKYISR  241 (245)
Q Consensus       227 ~~~~A~~~y~~al~~  241 (245)
                      +.++|.+..+++++.
T Consensus       387 ~~~~a~~~i~~alrL  401 (458)
T PRK11906        387 KIEEARICIDKSLQL  401 (458)
T ss_pred             CHHHHHHHHHHHhcc
Confidence            999999999998875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.78  E-value=0.001  Score=49.48  Aligned_cols=103  Identities=25%  Similarity=0.331  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-----CC-h----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-P----------IEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~d-~----------~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ....|......++.+.++..+++++.+++.-     .+ .          .....+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3344666667788888998899888877531     11 1          112345667888899999999999999999


Q ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +..      +|..-.++..+-.+|...|+...|...|+++.+.+.
T Consensus        89 l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   89 LAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             Hhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999      899999999999999999999999999999988764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.78  E-value=9.2e-05  Score=41.17  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      +.+||.+|..+|+|++|+++|++++.+..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            45666666666666666666666665544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.76  E-value=0.0008  Score=63.67  Aligned_cols=106  Identities=16%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      +++.........+.++...|++++|.+.+++.+..+|.      .......+|.++...|.+.+|...++.+..+     
T Consensus       411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~------n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-----  479 (822)
T PRK14574        411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA------NQNLRIALASIYLARDLPRKAEQELKAVESL-----  479 (822)
T ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----
Confidence            44444456666788888999999999999999999998      8888999999999999999999999888877     


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                       +|....+....|.++..+|++++|....++.++...+
T Consensus       480 -~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe  516 (822)
T PRK14574        480 -APRSLILERAQAETAMALQEWHQMELLTDDVISRSPE  516 (822)
T ss_pred             -CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence             7888889999999999999999999999888877654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.75  E-value=6.5e-05  Score=41.04  Aligned_cols=28  Identities=32%  Similarity=0.542  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          174 AARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +++++|.++..+|++++|+.+|++++++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            4445555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.71  E-value=0.00013  Score=39.79  Aligned_cols=33  Identities=30%  Similarity=0.560  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      +.+++++|.+|..+|++++|+++|++++++-++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            357899999999999999999999999987653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.71  E-value=0.0001  Score=40.97  Aligned_cols=30  Identities=23%  Similarity=0.529  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++.+||.+|...|++++|+++|++++....
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            578999999999999999999999876543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.00048  Score=55.17  Aligned_cols=92  Identities=24%  Similarity=0.272  Sum_probs=74.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      ..|..+-..|++++|+++|+..++-.|.      ....+-..-.+...+|+.-+||+...+-++.      =+++.+++.
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~EAW~  158 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQEAWH  158 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHHHHH
Confidence            3477888899999999999998876554      3333333334567789999999999998887      456688999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          217 AIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .++.+|...|++++|.-+|++.+=
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHH
Confidence            999999999999999999998763

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.70  E-value=0.0048  Score=49.74  Aligned_cols=145  Identities=15%  Similarity=0.081  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      +.+.+++......+....++..|....+..|-           ++...  .+.+.++.+++..++|++|+...++-+.++
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-----------s~~~~--qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPF-----------SPYSE--QAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            45666666666666777777777777766654           33332  256667999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHcCCcc-----------hHHHHHHHHHHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGK--------YREAIKYHSMVLQISEREGEYS-----------GSTEAYGAIADCYT  223 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~--------~~~Ai~~~~~al~~~~~~~d~~-----------~~~~a~~~la~~y~  223 (245)
                      |...+   ...+++-.|.++...=+        -.+|+..+++.+.-+......+           ..+.--..+|+.|.
T Consensus       102 P~~~n---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~  178 (254)
T COG4105         102 PTHPN---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL  178 (254)
T ss_pred             CCCCC---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87555   45556666666543222        3556677777665544322111           12222345799999


Q ss_pred             HcCCHHHHHHHHHHHHHHhh
Q 025965          224 ELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       224 ~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.|.+..|...++..++.++
T Consensus       179 kr~~~~AA~nR~~~v~e~y~  198 (254)
T COG4105         179 KRGAYVAAINRFEEVLENYP  198 (254)
T ss_pred             HhcChHHHHHHHHHHHhccc
Confidence            99999999999999988764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=0.00013  Score=39.69  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +++.+|.+|..+|++++|+++|++++++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            34445555555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.69  E-value=0.00057  Score=55.38  Aligned_cols=101  Identities=16%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +.+...+.....++..+...|..-+..+|..             .....+++++|.+++.+|+|++|...|..+.+   +
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~  207 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-------------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---D  207 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------cccchhHHHHHHHHHhcccchHHHHHHHHHHH---h
Confidence            3343444444445566666666667666652             12344788999999999999999999999877   4


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .++....++++..+|.+..++|+.++|-..++++++.
T Consensus       208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4555567889999999999999999999999999887

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.66  E-value=0.00055  Score=64.68  Aligned_cols=104  Identities=13%  Similarity=0.214  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH-
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS-  211 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~-  211 (245)
                      .++..+|.+|..+|++++|...|++++++.++      .+.+++++|..+... +.++|+.++++|+..+-..+..... 
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~  189 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE  189 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence            47888999999999999999999999999988      999999999999999 9999999999998776543211110 


Q ss_pred             ---------------H------HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 ---------------T------EAYGAIA------------DCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ---------------~------~a~~~la------------~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                                     .      .....++            .+|...+++++++++++.+++.-+
T Consensus       190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~  254 (906)
T PRK14720        190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN  254 (906)
T ss_pred             HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence                           0      1122344            788899999999999999988643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.65  E-value=0.00012  Score=42.72  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  220 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~  220 (245)
                      .++..+|.+|..+|++++|+..|+++++.      .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCCHHHHHHhhh
Confidence            45778999999999999999999999998      8888888888875

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.63  E-value=0.0002  Score=66.86  Aligned_cols=99  Identities=20%  Similarity=0.223  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..+..+|..|...+++..|+..|+.|++..|+      ...+..++|.+|.+.|+|..|++.|.++..+      +|...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~  630 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSK  630 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhH
Confidence            34445788899999999999999999999998      8899999999999999999999999999998      88888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+.+-.+..-...|+|++|...+.+.+..+.
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999998887653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.62  E-value=0.0059  Score=47.09  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .++..+|..|...|+.++|.+.|.++.+.   ...+......+.++-.+....+++.....+..++-.+.+..+|.....
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            46677899999999999999999997774   344555667777788888889999999999999999988766644444


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .....-|..+...++|..|.+.|-.+..
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            4555567778889999999998866543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0005  Score=58.72  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ...++...|......|+.++|+-.|+.|..+.|.      ...+|.++-.+|..+|.+.||...-+.+++.
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            4556777799999999999999999999999887      7888888888888888888887666655544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00028  Score=56.01  Aligned_cols=102  Identities=22%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      +++.+++.+....-.+..++..|.++|...|..                +.-+-+.+.+|+..++++...+..++|+++.
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~----------------~~Y~tnralchlk~~~~~~v~~dcrralql~   74 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV----------------ASYYTNRALCHLKLKHWEPVEEDCRRALQLD   74 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhcCCCc----------------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence            577777888777778899999999999988752                1233367889999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      ++      ...+.+.+|.+......|++||..+.++..+.+...
T Consensus        75 ~N------~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   75 PN------LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             hH------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            99      999999999999999999999999999998887654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.0013  Score=52.50  Aligned_cols=104  Identities=15%  Similarity=0.165  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC------CChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIE------EKKAARGLGASLQRQGKYREAIKYHSMVL  199 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------~d~~~------~~~a~~~lg~~~~~~g~~~~Ai~~~~~al  199 (245)
                      ..++-..|+-++..|+|.+|...|..|+...+++      +++..      ....+.|.+.++...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            3445578999999999999999999999887764      22222      22347899999999999999999999999


Q ss_pred             HHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       200 ~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      +.      .|++..+|+..|.+....=+.++|...+.++++.
T Consensus       258 ~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 RH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             hc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            88      8899999999999999888999999999998864

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.56  E-value=0.0015  Score=48.10  Aligned_cols=103  Identities=13%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+.+++........+..++..++.-....|-           ++-  .-.+.+.+|.+|+..+++++|+..+++-+++.|
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-----------g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPF-----------GEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------Ccc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            4444555555555666666666666666554           222  223677789999999999999999999999998


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGK---------------YREAIKYHSMVLQIS  202 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~---------------~~~Ai~~~~~al~~~  202 (245)
                      +..+   ...+++..|.+++.+..               ..+|...|++.++.+
T Consensus        79 ~hp~---vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   79 THPN---VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCC---ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            8554   66788899999988876               788888888887773

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.52  E-value=0.0013  Score=45.24  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=56.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          181 SLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       181 ~~~~~g~~~~Ai~~~~~al~~~~~~~d~~---~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ...+.|||.+|++.+.+..+.........   ....+..++|.++...|++++|...+++++++.++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999988877655   56778899999999999999999999999998753

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.52  E-value=0.0012  Score=59.35  Aligned_cols=110  Identities=16%  Similarity=0.078  Sum_probs=78.0

Q ss_pred             ChHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHH
Q 025965          127 PKKEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR----EAIKYHSMVL  199 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~----~Ai~~~~~al  199 (245)
                      +....++.++..|..|...++   ...|+..|++|+++.|+      .+.++..++.++.....+.    ..+....++.
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            344578888889998887665   78999999999999998      7777777777765543322    1222222222


Q ss_pred             HHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       200 ~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ........++..+.+|..+|..+...|++++|..++++|++.-
T Consensus       408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~  450 (517)
T PRK10153        408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE  450 (517)
T ss_pred             HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            2222222244456789999999999999999999999999754

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.50  E-value=0.00035  Score=37.89  Aligned_cols=29  Identities=34%  Similarity=0.527  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .+++.+|.++..+|++++|+++|++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            56788999999999999999999999888

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.49  E-value=0.00032  Score=63.52  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ....++..|.+..+.+++..|...|...+.+.|+      ...+++|++.+|.+.|+-.+|...+++|++.      +..
T Consensus       518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc------n~~  585 (777)
T KOG1128|consen  518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC------NYQ  585 (777)
T ss_pred             chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc------CCC
Confidence            4557888999999999999999999999999999      9999999999999999999999999999998      455


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ....+.|.-.+-.+.|.+++|.+.|.+.++.-
T Consensus       586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            56677788888899999999999999887754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.45  E-value=0.0001  Score=40.45  Aligned_cols=32  Identities=41%  Similarity=0.578  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 025965          155 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI  192 (245)
Q Consensus       155 ~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai  192 (245)
                      |++|+++.|+      ...+++++|.++...|++++|+
T Consensus         2 y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN------NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhc
Confidence            7899999999      9999999999999999999986

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.45  E-value=0.0012  Score=59.09  Aligned_cols=97  Identities=13%  Similarity=0.196  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ++-..|.++...++|++|+..|+.|+.+.++      ....++.++.....+++|+-....-.+.++.      .|+.-.
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~~ra  144 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL------RPSQRA  144 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhhhHH
Confidence            3445677778888888888888888887777      7778888888888888888777777776666      677777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .|...+.++...|++..|....+...+..
T Consensus       145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  145 SWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78888888888888888888877766554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.45  E-value=0.00049  Score=37.39  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+++.+|.+|..+|++++|.++|++++++-+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3566667777777777777777777766543

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.44  E-value=0.0019  Score=54.02  Aligned_cols=96  Identities=18%  Similarity=0.212  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      ++.+++..+..++.++.+|+.|.+++...+-           +     ...+.+.+..|+..++|..|...++.|+.+.+
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-----------N-----pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-----------N-----PVYHINRALAYLKQKSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhccCCC-----------C-----ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence            5778888888889999999999999998763           1     12455779999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .      ...+|...|.+....|+..+|-+.++.++++
T Consensus       163 ~------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  163 L------YVKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             H------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            8      8999999999999999999999999999988

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.43  E-value=0.0026  Score=50.60  Aligned_cols=96  Identities=22%  Similarity=0.223  Sum_probs=74.2

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-------CChH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPI  169 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------~d~~  169 (245)
                      ..+.++..|..++-.+...         ..+....+...+.+|+.|...|+.+....++++|++.+...       ....
T Consensus        92 t~~~ai~~YkLAll~~~~~---------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~  162 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIK---------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM  162 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence            4567777777777665431         24556788899999999999999888888888887776642       1233


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ......+-+|..+++.|++++|+.+|.+++..
T Consensus       163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            45667888999999999999999999998765

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.41  E-value=0.0013  Score=59.08  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +.-..|.....+|+-++|..+...++.....      ...|+.-+|.+++...+|++||++|+.|+.+      ++++..
T Consensus        43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~q  110 (700)
T KOG1156|consen   43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQ  110 (700)
T ss_pred             hHHhccchhhcccchHHHHHHHHHHhccCcc------cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHH
Confidence            3444589999999999999999999886555      6678889999999999999999999999999      888899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+.-++.+-..+||++-....-.+.++.
T Consensus       111 ilrDlslLQ~QmRd~~~~~~tr~~LLql  138 (700)
T KOG1156|consen  111 ILRDLSLLQIQMRDYEGYLETRNQLLQL  138 (700)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            9999999999999998877766666553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.39  E-value=0.004  Score=55.99  Aligned_cols=121  Identities=18%  Similarity=0.227  Sum_probs=88.8

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++....++|+..|.                ....++..|.++-..|++.+|.+..+.|..+...      .-....
T Consensus       209 ~~~~Al~~Id~aI~htPt----------------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~------DRyiNs  266 (517)
T PF12569_consen  209 DYEKALEYIDKAIEHTPT----------------LVELYMTKARILKHAGDLKEAAEAMDEARELDLA------DRYINS  266 (517)
T ss_pred             CHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh------hHHHHH
Confidence            444555555555555443                3446778899999999999999999999998776      555556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc----hHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS----GSTEA---YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~----~~~~a---~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..+-.+.+.|+.++|...+..-    .+.+.++    ....+   ....|.+|...|++..|.+.|....+.+.
T Consensus       267 K~aKy~LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  267 KCAKYLLRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            6777889999999998877663    3333122    12222   34469999999999999999999988775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.011  Score=47.45  Aligned_cols=108  Identities=18%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ...+..+--.....++++|+..|++++.+...-.........+...+.++.+...|++|-..+.+-.....+....+...
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            34444455566778999999999999999887666666677788899999999999999999888777776666556666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ..+...-.+|.-..||..|..+|+..-+
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~q  218 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQ  218 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence            6677667778888899999999987544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.37  E-value=0.0016  Score=49.01  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ......+..|..++.+|++++|...|+-..-+      ++...+.+..+|.|+..+++|++|+..|..+...-
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            36777889999999999999999999987776      77788899999999999999999999999887654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.37  E-value=0.0053  Score=54.74  Aligned_cols=104  Identities=20%  Similarity=0.114  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ..-.+..|+.+...|+.++|++.+++++......+  .....++..+|.++..+.+|++|..++.+..+.     .....
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~--Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSk  339 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK--QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSK  339 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH--hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHH
Confidence            34556789999999999999999999885333322  224567899999999999999999999997765     24456


Q ss_pred             HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHh
Q 025965          212 TEAYGAIADCYTELGDL-------ERAARFYDKYISRL  242 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~-------~~A~~~y~~al~~~  242 (245)
                      +-.++..|.++...|+.       ++|.+++.++-...
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            66777789999999999       77777777765544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0065  Score=54.17  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh------------------------CC-ChHHHHHHHHHHHHHHHHcCCHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQN------------------------VK-DPIEEKKAARGLGASLQRQGKYR  189 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------------------~~-d~~~~~~a~~~lg~~~~~~g~~~  189 (245)
                      ....|.+.+++|+|++|...|+...+-...                        .. -+......++|.+.++...|+|.
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~  192 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN  192 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence            334589999999999999988775321100                        00 01113345789999999999999


Q ss_pred             HHHHHHHHHHHHHHHc---CCcc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          190 EAIKYHSMVLQISERE---GEYS------GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       190 ~Ai~~~~~al~~~~~~---~d~~------~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|++.+++|+++.++.   +|..      ....+...++.++..+|+.++|...|...+....
T Consensus       193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~  255 (652)
T KOG2376|consen  193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP  255 (652)
T ss_pred             HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence            9999999999888763   2111      3444677789999999999999999999887543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.0086  Score=50.49  Aligned_cols=30  Identities=20%  Similarity=0.228  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAAL  159 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  159 (245)
                      .+-...+++|.+++..|+|++|...|+-+.
T Consensus        55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~   84 (557)
T KOG3785|consen   55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLM   84 (557)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            334566778999999999999988665443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.34  E-value=0.0015  Score=61.30  Aligned_cols=97  Identities=27%  Similarity=0.390  Sum_probs=85.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      +.-+.--..+++|++|++..+++++..|+      ...+..-+|.++...+. .++|-+.|..|.++      +|+..-+
T Consensus         6 LK~Ak~al~nk~YeealEqskkvLk~dpd------NYnA~vFLGvAl~sl~q~le~A~ehYv~AaKl------dpdnlLA   73 (1238)
T KOG1127|consen    6 LKSAKDALRNKEYEEALEQSKKVLKEDPD------NYNAQVFLGVALWSLGQDLEKAAEHYVLAAKL------DPDNLLA   73 (1238)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhcCCC------cchhhhHHHHHHHhccCCHHHHHHHHHHHHhc------ChhhhHH
Confidence            34466667789999999999999999988      78888899999999988 99999999999999      8999999


Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHHHhhc
Q 025965          215 YGAIADCYTE---LGDLERAARFYDKYISRLES  244 (245)
Q Consensus       215 ~~~la~~y~~---~g~~~~A~~~y~~al~~~~~  244 (245)
                      +-.++..|..   ..+++++-..|.+++..+++
T Consensus        74 WkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~  106 (1238)
T KOG1127|consen   74 WKGLGNLYERYNDILDLDRAAKCYQRAVLILEN  106 (1238)
T ss_pred             HHHHHHHHHccchhhhhhHhHHHHHHHHHhhhh
Confidence            9999999986   55789999999999887754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.30  E-value=0.0079  Score=48.49  Aligned_cols=106  Identities=17%  Similarity=0.139  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..++..|......|++++|+.+|++.....|.   .....++...++.++++.++|++|+...++-+++   .+.+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~---s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l---yP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF---SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL---YPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---CCCCCCh
Confidence            346778899999999999999999997754443   3345788899999999999999999999998888   4456778


Q ss_pred             HHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELG-----D---LERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g-----~---~~~A~~~y~~al~~~~  243 (245)
                      ..+++..|.++...=     |   ..+|...++..++.+.
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP  147 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP  147 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence            889999999976432     2   2455666666666554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.27  E-value=0.0029  Score=52.76  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          132 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      ....+..+++....|  ++.+|...|++..+.++.      ....+++++.+...+|+|++|.+.+.+++..      ++
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~  232 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DP  232 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------C
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------cc
Confidence            345555677777666  588999999985443322      4567899999999999999999999998765      77


Q ss_pred             hHHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 025965          210 GSTEAYGAIADCYTELGDL-ERAARFYDKYI  239 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~-~~A~~~y~~al  239 (245)
                      ..++++.|+..+...+|+. +.+.++.++.-
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            8889999999999999998 55555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.0043  Score=51.14  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ....+.|-+.++.|+|++|+.-|+.|++.   .|.   .+..-+|++.+++..|+++.|.++..+.+++-
T Consensus       145 d~~in~gCllykegqyEaAvqkFqaAlqv---sGy---qpllAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  145 DGQINLGCLLYKEGQYEAAVQKFQAALQV---SGY---QPLLAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             chhccchheeeccccHHHHHHHHHHHHhh---cCC---CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            44668888889999999999999999888   333   34456789999999999999999998888753

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.25  E-value=0.0002  Score=62.02  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=85.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      ..+..++..++|+.|+..|.+|+++.++      -+..+-+.+.++.+.++|..|+..+.++++.      +|....+|+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~   76 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYV   76 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhc------Cchhhheee
Confidence            3467777889999999999999999998      6667778888999999999999999999999      899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          217 AIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ..|.+...++++.+|...|++......+
T Consensus        77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   77 RRGTAVMALGEFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             eccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence            9999999999999999999887765543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0025  Score=54.62  Aligned_cols=97  Identities=11%  Similarity=0.109  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      ++.-|...+..+++..|+.+.+++++..++      ...++.-.|..+...|+.++|+-.|+.|..+      .|...++
T Consensus       303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L------ap~rL~~  370 (564)
T KOG1174|consen  303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQML------APYRLEI  370 (564)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhc------chhhHHH
Confidence            334466777889999999999999999888      8889999999999999999999999999999      7888899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |..+-.+|...|.+.+|...-+.++..+.
T Consensus       371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~  399 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFKEANALANWTIRLFQ  399 (564)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence            99999999999999999988888877654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.0084  Score=53.46  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=73.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS-------------  202 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~-------------  202 (245)
                      +..+++.|++++.++|+..++-.   .+.      ......-.|.+++++|+|++|+..|+..++--             
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~~---~~~------~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKGL---DRL------DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhcc---ccc------chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            57899999999999999988821   111      12345556788999999999999998763211             


Q ss_pred             -----------HHcCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          203 -----------EREGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       203 -----------~~~~d~-~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                                 +..... .+..+.++|.|.++...|+|.+|++.+++++++..
T Consensus       154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~  206 (652)
T KOG2376|consen  154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICR  206 (652)
T ss_pred             HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence                       111111 13556789999999999999999999999966553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.09  E-value=0.0011  Score=38.46  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA  180 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~  180 (245)
                      .++.+|..|..+|++++|++.|+++++..|+      ...+...+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~------~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPD------DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------CHHHHHHhhh
Confidence            4667899999999999999999999999998      7777776664

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.09  E-value=0.0011  Score=35.58  Aligned_cols=30  Identities=33%  Similarity=0.709  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +++++|.+|...|++++|.+.|++.++.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            556667777777777777777776666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.06  E-value=0.0018  Score=35.09  Aligned_cols=30  Identities=33%  Similarity=0.423  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      +++.+|.+|...|++++|..+|++++++.+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445556666666666666666666666554

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.06  E-value=0.054  Score=41.38  Aligned_cols=94  Identities=29%  Similarity=0.388  Sum_probs=74.3

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHH
Q 025965          141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA  219 (245)
Q Consensus       141 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~~a~~~la  219 (245)
                      ++...|+++.|...+.+++...+.   ...........+..+...+++++|+..+.+++..      .+. ....+.+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~  209 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKL------NPDDDAEALLNLG  209 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh------CcccchHHHHHhh
Confidence            888999999999999999553321   1124455566666688889999999999999888      444 567888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          220 DCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       220 ~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..+...+++++|...+..++....
T Consensus       210 ~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         210 LLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             HHHHHcccHHHHHHHHHHHHhhCc
Confidence            999999999999999999887643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.96  E-value=0.0026  Score=36.01  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ++.++|.+|..+|++++|..++++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4444555555555555555555544443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.92  E-value=0.065  Score=42.41  Aligned_cols=134  Identities=20%  Similarity=0.237  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +.+++.-+...+-..-+-..+.+++...|.                ...+++.+|..+...|+|+.|.+.|...+++.|.
T Consensus        68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~----------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~  131 (297)
T COG4785          68 LFERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  131 (297)
T ss_pred             HHHhcchhhhhhHHHHHhhhhhhhhhcCCC----------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence            334444444444343333445555555443                3446777888888899999999988888888877


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------------HHHHH----------
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL------------------------------QISER----------  204 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al------------------------------~~~~~----------  204 (245)
                            ...+..|.|..++--|+|+-|.+.+.+-.                              +.+++          
T Consensus       132 ------y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~i  205 (297)
T COG4785         132 ------YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNI  205 (297)
T ss_pred             ------chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHH
Confidence                  55555566655555555555443332111                              00000          


Q ss_pred             --------------------cCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          205 --------------------EGEYS----GSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       205 --------------------~~d~~----~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                                          ..++.    ...++|..+|.-|...|+.++|...|+-++.
T Consensus       206 V~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         206 VEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                                01111    2455788899999999999999999988875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.91  E-value=0.032  Score=45.48  Aligned_cols=91  Identities=20%  Similarity=0.171  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965          147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  226 (245)
Q Consensus       147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g  226 (245)
                      .-...++.+++|++.+...+...........+|.-|...|+|++|+.+++.+...+++.|=..-.......+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            34466788999999999888888888889999999999999999999999999988887766677888999999999999


Q ss_pred             CHHHHHHHHHH
Q 025965          227 DLERAARFYDK  237 (245)
Q Consensus       227 ~~~~A~~~y~~  237 (245)
                      +.+....+.-+
T Consensus       233 ~~~~~l~~~le  243 (247)
T PF11817_consen  233 DVEDYLTTSLE  243 (247)
T ss_pred             CHHHHHHHHHH
Confidence            99888776543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK11906 transcriptional regulator; Provisional

Probab=96.90  E-value=0.013  Score=51.12  Aligned_cols=94  Identities=14%  Similarity=-0.058  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+.++..+|.+....++++.|...|++|+.+.|+      .+.+++..|.+....|+.++|++..++++++      +|.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL------sP~  404 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICIDKSLQL------EPR  404 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------Cch
Confidence            3556777799999999999999999999999999      8999999999999999999999999999999      665


Q ss_pred             HHHH-HHHHHH-HHHHcCCHHHHHHHHHH
Q 025965          211 STEA-YGAIAD-CYTELGDLERAARFYDK  237 (245)
Q Consensus       211 ~~~a-~~~la~-~y~~~g~~~~A~~~y~~  237 (245)
                      ...+ ...+-. .|... -.+.|+..|-+
T Consensus       405 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        405 RRKAVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             hhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence            3332 222222 45543 46777766643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.88  E-value=0.0036  Score=35.43  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      +.++.++|.++..+|++++|+.++++++.+.++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            4578899999999999999999999999887764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.0082  Score=48.13  Aligned_cols=132  Identities=11%  Similarity=0.010  Sum_probs=99.1

Q ss_pred             hchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc--cCCCccccccCChHHHHHHHHHHHHHHHHCCCH
Q 025965           71 GGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG--SRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL  148 (245)
Q Consensus        71 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  148 (245)
                      |.+....+...+.-+.+++..+....++..+...|..++....+-  -..+.....+.-+......+++.+.++...|+|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            333334445556678889999999999999999999988765431  011111111122233445677889999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       149 ~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      -+++++....+...+.      ...+++..|.+....=+.++|-..+.+++++      +|..+.+
T Consensus       247 yevleh~seiL~~~~~------nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l------dpslasv  300 (329)
T KOG0545|consen  247 YEVLEHCSEILRHHPG------NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL------DPSLASV  300 (329)
T ss_pred             HHHHHHHHHHHhcCCc------hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc------ChhhHHH
Confidence            9999999999999888      8999999999999999999999999999998      6655443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.83  E-value=0.012  Score=44.91  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHcCC-cchHHH
Q 025965          147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK----YREAIKYHSMVLQISEREGE-YSGSTE  213 (245)
Q Consensus       147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~----~~~Ai~~~~~al~~~~~~~d-~~~~~~  213 (245)
                      -+++|+.-|++|+.+.|+      ...++.++|.++..++.    ..+|..+|++|.+.+++.-+ +|++..
T Consensus        50 miedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            356778889999999998      88999999999887665    33455555555555443211 555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.83  E-value=0.16  Score=43.44  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ....++.-+.....+||++.|-.+..++-+..++   .  ..-.....+.....+|||+.|.....+++++      .|.
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~---~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr  185 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD---D--TLAVELTRARLLLNRRDYPAARENVDQLLEM------TPR  185 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC---c--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcC
Confidence            3456666788889999999999999998876433   1  2334556778899999999999999999998      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                      ...+....-++|...|+++....+..+.
T Consensus       186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L  213 (400)
T COG3071         186 HPEVLRLALRAYIRLGAWQALLAILPKL  213 (400)
T ss_pred             ChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            8889999999999999999888776554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.79  E-value=0.00036  Score=58.10  Aligned_cols=95  Identities=18%  Similarity=0.153  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      ....+.-.+..|.++.|++.|..++++.+.      .+..+...+.++...++...|+..|..++++      +++.+..
T Consensus       117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~  184 (377)
T KOG1308|consen  117 KKVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKG  184 (377)
T ss_pred             HHHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhcc------Ccccccc
Confidence            334466677789999999999999999888      7888889999999999999999999999998      7777778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      |-..|.+...+|++++|..++..+.++
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            888899999999999999999888753

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.0036  Score=52.67  Aligned_cols=86  Identities=23%  Similarity=0.290  Sum_probs=64.9

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965          142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  221 (245)
Q Consensus       142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~  221 (245)
                      +....||..|+...+-.+.+.++     ........+|.++++.|||++|+..|+-+.+-      +...+....|+|-|
T Consensus        32 fls~rDytGAislLefk~~~~~E-----EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc  100 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDRE-----EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACC  100 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchh-----hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHH
Confidence            44567899999887766543332     23355667899999999999999999887552      33345677899999


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 025965          222 YTELGDLERAARFYDKY  238 (245)
Q Consensus       222 y~~~g~~~~A~~~y~~a  238 (245)
                      ++-+|.|.+|...-.++
T Consensus       101 ~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  101 KFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999998876654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.019  Score=47.92  Aligned_cols=103  Identities=19%  Similarity=0.173  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      +...+++......-++..++..|.+++..-.            +|....+..+.+.+-+.+..|+|..|+....+|+.+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc------------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~  149 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKC------------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK  149 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC------------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4677778888888888889999998887653            4555567778888999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      |.      ...+++.-+.++....++++|..+++..+.+..
T Consensus       150 P~------h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  150 PT------HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             cc------hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            98      899999999999999999999999998877633

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.01  Score=48.09  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .....+|.+-.+-||-+.|..+|+..-+....+.+-....-...+.+.++.-+++|.+|...|.+.+..      ++..+
T Consensus       213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~------D~~~~  286 (366)
T KOG2796|consen  213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM------DPRNA  286 (366)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc------CCCch
Confidence            344567999999999999999999777666666666667777888999999999999999999998888      77788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+.+|-|.|..-+|+...|++..+.++++.
T Consensus       287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  287 VANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            899999999999999999999998887654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.64  E-value=0.064  Score=35.14  Aligned_cols=73  Identities=21%  Similarity=0.316  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      +......|.-.+...+.++|+...+++++...   +....-.++..+..++...|+|.+++.+-..=++++++.+|
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED   78 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            34455567777788888888888888887443   34455666777778888888898888888888888776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.62  E-value=0.035  Score=41.03  Aligned_cols=107  Identities=21%  Similarity=0.209  Sum_probs=68.8

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccc--cccCCh-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDE--VIVDPK-----KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  169 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~  169 (245)
                      .....+..+.++++..... .+....  ....+.     .....+...++..+...|++++|+..+++++...|-     
T Consensus        21 ~~~~~~~~~~~al~ly~G~-~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-----   94 (146)
T PF03704_consen   21 DPEEAIELLEEALALYRGD-FLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY-----   94 (146)
T ss_dssp             -HHHHHHHHHHHHTT--SS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----
T ss_pred             CHHHHHHHHHHHHHHhCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Confidence            4455556667777665432 111111  111111     122334446677889999999999999999999998     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCcch
Q 025965          170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYSG  210 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~-~~d~~~  210 (245)
                       ...++..+-.++..+|++.+|+..|++.-+...+ .|..|+
T Consensus        95 -~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps  135 (146)
T PF03704_consen   95 -DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS  135 (146)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred             -CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence             7888899999999999999999999999877764 465554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.62  E-value=0.082  Score=43.83  Aligned_cols=90  Identities=24%  Similarity=0.323  Sum_probs=70.0

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH----cCCcc----h
Q 025965          143 LRNQDLEKAFTEFKAALELAQNVKDP---IEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER----EGEYS----G  210 (245)
Q Consensus       143 ~~~g~~~~A~~~~~~al~l~~~~~d~---~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~----~~d~~----~  210 (245)
                      ..+|+++.|..++.++-.+.. ..++   ...+..+++.|......+ ++++|+.++++|+++...    ....+    .
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467999999999999988775 2232   336777999999999999 999999999999999654    12222    3


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAAR  233 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~  233 (245)
                      ...++..++.+|...++.+...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH
Confidence            56678889999999888764443

It is also involved in sporulation [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.58  E-value=0.016  Score=49.37  Aligned_cols=100  Identities=19%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH---------HhC--CChH--------------HHHHHHHHHHHHHHHcCCHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELA---------QNV--KDPI--------------EEKKAARGLGASLQRQGKYREA  191 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~---------~~~--~d~~--------------~~~~a~~~lg~~~~~~g~~~~A  191 (245)
                      ..+.-+...|++++|.+..+.+++..         +.+  +|+.              ..+..+..+|..+++.+.|.+|
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA  347 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA  347 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence            44667788899999988777666421         111  1111              1224577899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       192 i~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      -++++.|++.      .+. ...+..+|.++..+|+.++|.+.+++++-.+.
T Consensus       348 ~~~leaAl~~------~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         348 SEALEAALKL------RPS-ASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHHhc------CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            9999999887      443 45678899999999999999999999986543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.57  E-value=0.099  Score=40.30  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHH
Q 025965          151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  230 (245)
Q Consensus       151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~  230 (245)
                      -.+.++.-++-+++.........++..+|.-|.+.||+++|++.|.++.+...   ......+.+.++-++....||+..
T Consensus        15 ~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~   91 (177)
T PF10602_consen   15 ELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSH   91 (177)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHH
Confidence            34445555555555556666788999999999999999999999999877633   233466778889999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 025965          231 AARFYDKYISRLE  243 (245)
Q Consensus       231 A~~~y~~al~~~~  243 (245)
                      ...+..++-...+
T Consensus        92 v~~~i~ka~~~~~  104 (177)
T PF10602_consen   92 VEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.51  E-value=0.13  Score=48.26  Aligned_cols=104  Identities=22%  Similarity=0.330  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HhCCC-hHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELA----QNVKD-PIE---------EKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----~~~~d-~~~---------~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ..+++.+......+|-+.|+++|+++-.-+    +-+.+ +..         ....+..-|...-..|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            356667777778888999999888753211    11111 111         1123455677788899999999999765


Q ss_pred             H-------------------HHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          199 L-------------------QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       199 l-------------------~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      -                   .++++.||    -.+.|.+|+.|...|+..+|..+|.+|-.
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd----~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGD----KAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhccc----HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            4                   44444443    44677899999999999999999988743

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.44  E-value=0.027  Score=51.15  Aligned_cols=89  Identities=12%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 025965          141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  220 (245)
Q Consensus       141 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~  220 (245)
                      +-+.+.+++.|...+.+|....+.       ...++.-+.....+++.++|+..++++++.      -|.....|..+|.
T Consensus       627 le~en~e~eraR~llakar~~sgT-------eRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  627 LEFENDELERARDLLAKARSISGT-------ERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQ  693 (913)
T ss_pred             HhhccccHHHHHHHHHHHhccCCc-------chhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhH
Confidence            445556677777777776665443       456667777788888999999999999888      6777888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Q 025965          221 CYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       221 ~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++..+++.+.|.+.|...+...
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             HHHHHHHHHHHHHHHHhccccC
Confidence            9999999999999888776543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.42  E-value=0.0078  Score=52.69  Aligned_cols=110  Identities=13%  Similarity=0.070  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCC-
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGE-  207 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~-~~~~~~d-  207 (245)
                      +.+..+..+|..|+|.+|....... .+...-+    ..-......+|+|.+.++.|.|.-++.+|.+|++ ...+... 
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            4445677788889988888766532 1111211    1111344468999999999999999999999995 4444221 


Q ss_pred             -c---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          208 -Y---------SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       208 -~---------~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                       .         .......||.|..|...|+.-.|.++|.++...+..
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence             1         134567999999999999999999999999988753

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.40  E-value=0.0073  Score=50.41  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g--~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ...-.++...++++.|...++.+.+..++      ......-.+++....|  .+.+|...|++..+.      .+..+.
T Consensus       135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~  202 (290)
T PF04733_consen  135 ALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPK  202 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHH
Confidence            33467889999999999888876543322      2222333344444444  699999999985332      233456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .++.+|.++..+|++++|.+.++++++.
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~~  230 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALEK  230 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            7888999999999999999999988653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.38  E-value=0.22  Score=35.57  Aligned_cols=105  Identities=14%  Similarity=0.098  Sum_probs=73.1

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----C-hHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----D-PIE  170 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----d-~~~  170 (245)
                      ..++.+..++.++++..+.   ++..+.. +-.-..+.++-.++..+..+|+|++++....+++.+...-+    | -+.
T Consensus        23 g~~~eAa~s~r~AM~~srt---iP~eEaF-Dh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRT---IPAEEAF-DHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTT---S-TTS----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcc---CChHhhc-ccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            4556666778888877653   1111111 22334666777789999999999999999999999887633    2 223


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      ...+..+.+..+-..|+.++|+..|+++-++..+
T Consensus        99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            4556788999999999999999999999887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.33  E-value=0.074  Score=46.27  Aligned_cols=91  Identities=18%  Similarity=0.045  Sum_probs=74.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  218 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l  218 (245)
                      -......++++.|+..+++..+..++         ....++.++...++-.+|+....++++.      .|..+..+...
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---------v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Q  240 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---------VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQ  240 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---------HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence            34455668899999999986654432         3445788888999999999999999966      66668888899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          219 ADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       219 a~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      +..+...++++.|.+..+++++....
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~  266 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPS  266 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            99999999999999999999987543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.33  E-value=0.043  Score=48.32  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          148 LEKAFTEFKAALELAQNVK-------------------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       148 ~~~A~~~~~~al~l~~~~~-------------------d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ..+|.++|++|++..+..-                   |..-...+-+.+|.+.++.|+.++|++.++..++...    .
T Consensus       216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~  291 (539)
T PF04184_consen  216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----N  291 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----c
Confidence            5677777777777665420                   1111245567899999999999999999999887621    2


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      .+....++|+-.++...+.|.++.....++=
T Consensus       292 ~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  292 LDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             cchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            2356789999999999999988877776653

The molecular function of this protein is uncertain.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.29  E-value=0.0098  Score=31.65  Aligned_cols=29  Identities=28%  Similarity=0.438  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ++++++|.++...|++++|+..|++.++.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            36788899999999999999999998776

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.28  E-value=0.27  Score=45.57  Aligned_cols=115  Identities=16%  Similarity=0.085  Sum_probs=84.4

Q ss_pred             ChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          127 PKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      +...++...+.+|.+++ ...+++.|..+.++++.+..+.+-......+..-++.++...+... |+...++.++.++..
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            45678889999999988 7899999999999999998773333334555566688888777666 999999999998875


Q ss_pred             CCcchHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          206 GEYSGSTEAYGAI-ADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       206 ~d~~~~~~a~~~l-a~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +..+... +...+ ...+...+|+..|.+.++.......
T Consensus       133 ~~~~w~~-~frll~~~l~~~~~d~~~Al~~L~~~~~~a~  170 (608)
T PF10345_consen  133 GHSAWYY-AFRLLKIQLALQHKDYNAALENLQSIAQLAN  170 (608)
T ss_pred             CchhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence            5444332 22223 3333334899999999998887663

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>smart00028 TPR Tetratricopeptide repeats

Probab=96.25  E-value=0.0067  Score=31.28  Aligned_cols=28  Identities=29%  Similarity=0.586  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ++.++|.+|...|++++|..+++++++.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4455566666666666666666655544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.20  E-value=0.076  Score=52.07  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                      +..+...+.+.|++++|...+++..+.    +-.+ ...+|..+..+|.+.|++++|.+.|++.
T Consensus       652 ynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        652 FSALVDVAGHAGDLDKAFEILQDARKQ----GIKL-GTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            334444444455555555444443221    1111 1234444444455555555555444443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.15  E-value=0.13  Score=39.19  Aligned_cols=98  Identities=23%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcc---
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYS---  209 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~-~~~~~g~~~~Ai~~~~~al~~~~~~~d~~---  209 (245)
                      .....|..+...+++..++..+.+++...+..      .......+. ++...|++++|+..+.+++..      .+   
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~  164 (291)
T COG0457          97 ALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALEL------DPELN  164 (291)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcc
Confidence            34445555555555555665555555433321      112222233 666777777777777776443      22   


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .....+...+..+...++++.|...+.+++....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  198 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNP  198 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence            4555566666666677777777777777666543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.042  Score=45.48  Aligned_cols=100  Identities=22%  Similarity=0.236  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG---  206 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~---  206 (245)
                      ..+....+.|-+.+..|+|+.|..-|+.|++...-      .+...++++.+.++.|+|+.|+++-.+.++.--+..   
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl  215 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL  215 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence            34556777888999999999999999999987665      566678999999999999999999988776543310   


Q ss_pred             ---------------C-----cchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 025965          207 ---------------E-----YSGSTEAYGAIADCYTELGDLERAARFY  235 (245)
Q Consensus       207 ---------------d-----~~~~~~a~~~la~~y~~~g~~~~A~~~y  235 (245)
                                     +     ......+.+.-+-+++..|+++.|.+..
T Consensus       216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                           0     0133455666677888899998887654

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.02  E-value=0.1  Score=51.16  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .+..+-..|...|++++|.+.+.+.......+..   ....++.+-..|.+.|++++|.+.|++..+.    + -+....
T Consensus       544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P---D~vTynaLI~ay~k~G~ldeA~elf~~M~e~----g-i~p~~~  615 (1060)
T PLN03218        544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDP---DHITVGALMKACANAGQVDRAKEVYQMIHEY----N-IKGTPE  615 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----C-CCCChH
Confidence            3344455555666666666666655432100000   1233444445555566666666655554322    1 111233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      .|..+...|.+.|++++|.+.|++..
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            44445555555555555555554443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.91  E-value=0.016  Score=50.79  Aligned_cols=120  Identities=11%  Similarity=0.070  Sum_probs=83.7

Q ss_pred             HHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhC----CC------
Q 025965           99 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNV----KD------  167 (245)
Q Consensus        99 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~----~d------  167 (245)
                      +-...+|.++.+.......-.+...-+.+.-..+..+.++|-++++.|.|.-+..+|.+|++ ....+    +.      
T Consensus       250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl  329 (696)
T KOG2471|consen  250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL  329 (696)
T ss_pred             HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence            44445677776665432222222222344555666778899999999999999999999996 22221    11      


Q ss_pred             -hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965          168 -PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  224 (245)
Q Consensus       168 -~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~  224 (245)
                       .....+.++|+|..+...|++-.|...|.++.+.+.      ..+..|..+|.|...
T Consensus       330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh------~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH------RNPRLWLRLAECCIM  381 (696)
T ss_pred             hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence             112456799999999999999999999999998854      345678888887753

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.11  Score=47.22  Aligned_cols=100  Identities=13%  Similarity=0.051  Sum_probs=79.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      +.|.-.++..+|..+++.|...+...+........++..++++.+|....+.|.|.+++.+|-+.      +|...-.-.
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------d~~~~l~q~  432 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------DRQSPLCQL  432 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------ccccHHHHH
Confidence            56778888999999999999998877754444445788999999999999999999999998777      665555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          217 AIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+-.+...-|.-++|.....+....+
T Consensus       433 ~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  433 LMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            66666777788899998887776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.89  E-value=0.06  Score=32.60  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  217 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~  217 (245)
                      .+++.++..+++.|+|++|..+.+.++++      +|++..+...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~------eP~N~Qa~~L   40 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI------EPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TTS-HHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCCcHHHHHH
Confidence            46788999999999999999999999999      7776665443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.88  E-value=0.37  Score=37.36  Aligned_cols=121  Identities=19%  Similarity=0.219  Sum_probs=87.9

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      ++.-.+...|+++++-...           +    +...++.+++..+..+++..|....++..+..+....+.    ..
T Consensus       103 Gr~~EA~~hy~qalsG~fA-----------~----d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd----~~  163 (251)
T COG4700         103 GRYHEAVPHYQQALSGIFA-----------H----DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD----GH  163 (251)
T ss_pred             hhhhhhHHHHHHHhccccC-----------C----CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC----ch
Confidence            3555555667777665432           2    233677889999999999999999998877665433322    23


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .-+|.++..+|++.+|...|+.++..      .|+ +.+....+....++|..++|...|....+..
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~------ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~  223 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISY------YPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA  223 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHh------CCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            45678899999999999999999988      443 3455556888889998888888887766654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.83  E-value=0.064  Score=50.41  Aligned_cols=26  Identities=8%  Similarity=-0.066  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAAL  159 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al  159 (245)
                      .+..+...|...|++++|...|++..
T Consensus       292 t~n~li~~y~~~g~~~eA~~lf~~M~  317 (697)
T PLN03081        292 AWNSMLAGYALHGYSEEALCLYYEMR  317 (697)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            45556677777777777777776654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.80  E-value=0.0095  Score=51.95  Aligned_cols=107  Identities=15%  Similarity=0.207  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025965           87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  166 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  166 (245)
                      +++...........++..|.++|+.-+.-                +.-+-+.+..+...++|..|+....+|+++.+.  
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnc----------------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--   70 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNC----------------AIYFANRALAHLKVESFGGALHDALKAIELDPT--   70 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcc----------------eeeechhhhhheeechhhhHHHHHHhhhhcCch--
Confidence            34444444456788888899999877641                112224567888889999999999999999988  


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965          167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  221 (245)
Q Consensus       167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~  221 (245)
                          ...+|...|.+....+.+.+|+..|++...+      .|+...+...+..|
T Consensus        71 ----~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l------~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   71 ----YIKAYVRRGTAVMALGEFKKALLDLEKVKKL------APNDPDATRKIDEC  115 (476)
T ss_pred             ----hhheeeeccHHHHhHHHHHHHHHHHHHhhhc------CcCcHHHHHHHHHH
Confidence                8999999999999999999999999999888      67666666555544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.77  E-value=0.11  Score=48.00  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...++..|..+...++.++|.....+|..+.+.      ....++..|..+...|...+|...|..|+.+      +|+.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------dP~h  717 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASVYYLRGLLLEVKGQLEEAKEAFLVALAL------DPDH  717 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------CCCC
Confidence            344556788888889999999899999888877      8889999999999999999999999999999      8988


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAAR--FYDKYISR  241 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~--~y~~al~~  241 (245)
                      ..+...+|.++.+.|+..-|..  ....++++
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~  749 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRL  749 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence            9999999999999998887777  66666654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.16  Score=41.44  Aligned_cols=103  Identities=15%  Similarity=0.207  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +.+-+..++.-.|.|.-++..+.+.++.++.     ........+|.+.+..||-+.|..+++.+-+...+...-.+...
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-----~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~  253 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-----QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM  253 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence            4455677777789999999999998885432     24556778999999999999999999988777666666667778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+.|.+.+|...+++-.|...|++++..
T Consensus       254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~  281 (366)
T KOG2796|consen  254 VLMNSAFLHLGQNNFAEAHRFFTEILRM  281 (366)
T ss_pred             HHhhhhhheecccchHHHHHHHhhcccc
Confidence            8999999999999999999999887754

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.69  E-value=0.024  Score=47.06  Aligned_cols=81  Identities=27%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ..++...++.+.-....|+.++|...|+-|+.++|+      ..+++..+|...-..++.-+|-.+|-+|+.+      +
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti------s  180 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTI------S  180 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeee------C
Confidence            456677777888888999999999999999999999      8999999999998889999999999999998      8


Q ss_pred             chHHHHHHHHHHH
Q 025965          209 SGSTEAYGAIADC  221 (245)
Q Consensus       209 ~~~~~a~~~la~~  221 (245)
                      |+...++-|.++.
T Consensus       181 P~nseALvnR~RT  193 (472)
T KOG3824|consen  181 PGNSEALVNRART  193 (472)
T ss_pred             CCchHHHhhhhcc
Confidence            8888887776654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=95.66  E-value=0.17  Score=46.17  Aligned_cols=94  Identities=17%  Similarity=0.046  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .++..+..-..+++.++|+..++++++.+|.      ....+..+|.++-.+++.+.|-+.|...++.      -|....
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~------cP~~ip  720 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKK------CPNSIP  720 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc------CCCCch
Confidence            4555567777788899999999999998888      7788888999999999999998888887766      555556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      .+..++.+-...|+.-+|...++++.
T Consensus       721 LWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  721 LWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            66666666666666666666666554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.65  E-value=0.083  Score=47.23  Aligned_cols=88  Identities=19%  Similarity=0.121  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965          145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  224 (245)
Q Consensus       145 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~  224 (245)
                      ..+.+.|.+......+.+|+      -...+...|..+...|+.++|++.+++++....+  -..-...+++.+|.++..
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~  317 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMF  317 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHH
Confidence            34566777778888888887      6777888999999999999999999998853222  123345678999999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 025965          225 LGDLERAARFYDKYIS  240 (245)
Q Consensus       225 ~g~~~~A~~~y~~al~  240 (245)
                      +.+|++|.+++.+..+
T Consensus       318 ~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  318 QHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HchHHHHHHHHHHHHh
Confidence            9999999999988775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.65  E-value=0.24  Score=32.51  Aligned_cols=66  Identities=15%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...-|.=++.+.+.++|+..++++++.   ..+.++...++..+..+|.+.|+|++.+.+--.=+++.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k---~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~   74 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEK---ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE   74 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677889999999999999876   444667788899999999999999999998777666654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.64  E-value=0.038  Score=51.89  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      +..+...+...|+.+.|...+++.+++      .|.....|..+..+|...|++++|.+.+++..+
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYGM------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhCC------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            444555555666666666665555444      455556788888889999999999888877654

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.59  E-value=0.23  Score=34.92  Aligned_cols=97  Identities=10%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHH-------HHHHHHHHHHHHHHHcC
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYR-------EAIKYHSMVLQISEREG  206 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~-------~Ai~~~~~al~~~~~~~  206 (245)
                      .+..++..||+-+|++..+..+...++..+..   ..+.--|.++..    ..|.+       .|++.|.++..+     
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence            36778899999999999999887666544322   233334444432    33433       345555555555     


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                       .|..+..++.+|.=+.....|+++..-.++++.+..
T Consensus        74 -sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~  109 (111)
T PF04781_consen   74 -SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTN  109 (111)
T ss_pred             -ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence             666677777777765555567777777777666544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=0.35  Score=42.73  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ..++..++..|...+.++++.+|.....+.++++..-..-...+-.+.-+|.+....|+..++.+..+-++.++++..|.
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di  521 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI  521 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence            44666777889999999999999999999999884323333345557789999999999999999999999999999998


Q ss_pred             chHHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 025965          209 SGSTEAYGAIADCYTELGD--LERAARFYD  236 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~--~~~A~~~y~  236 (245)
                      +......-.+-..|...|+  -+...+.|.
T Consensus       522 ~vqLws~si~~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  522 PVQLWSSSILTDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             hHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            8777777777888888888  555544443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.49  E-value=0.04  Score=30.82  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      .++..||.+....++|++|+..|++++++.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            35666777777788888888888888777554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.40  E-value=0.078  Score=50.97  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=79.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      ....++...+.|+.|+..|++...   +..+...-.++...+|.+...+-.-..--..|.+|+..++...+.++.+--|.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRE---SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL  556 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhh---cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence            344566667778888888887443   45555556677888888877654443334678888888888877888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          217 AIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .-|.+|..+|++++-+++|..|++++.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYS  583 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            899999999999999999999998874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.37  E-value=0.22  Score=46.74  Aligned_cols=91  Identities=18%  Similarity=0.292  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHcCCcchH----------HHHHH
Q 025965          151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV----LQISEREGEYSGS----------TEAYG  216 (245)
Q Consensus       151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a----l~~~~~~~d~~~~----------~~a~~  216 (245)
                      +.....+|+++++ ..|.......|++.+.-+...+|-+.|++||+|+    .++.+-..++|..          ...|.
T Consensus       838 s~g~w~eA~eiAE-~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~  916 (1416)
T KOG3617|consen  838 SQGMWSEAFEIAE-TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYS  916 (1416)
T ss_pred             hcccHHHHHHHHh-hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHH
Confidence            3334445555554 3566666777888888888999999999999874    3333333333322          23455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          217 AIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      -.|......|+.|.|+.+|..|-+.+
T Consensus       917 WWgqYlES~GemdaAl~~Y~~A~D~f  942 (1416)
T KOG3617|consen  917 WWGQYLESVGEMDAALSFYSSAKDYF  942 (1416)
T ss_pred             HHHHHHhcccchHHHHHHHHHhhhhh
Confidence            67999999999999999999998765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.13  Score=42.51  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISR  241 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g---~~~~A~~~y~~al~~  241 (245)
                      ..+.+.-||.+|..+|+++.|...|.+|+++      .+.+++.+..+|.++....   +..++...+++++..
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRL------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            6677889999999999999999999999999      6667778888888876443   457888888888864

>PRK10941 hypothetical protein; Provisional

Probab=95.18  E-value=0.21  Score=41.19  Aligned_cols=73  Identities=14%  Similarity=0.066  Sum_probs=63.6

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      .+.......+.++=.++.+.++++.|+...+..+.+      .|+.+.-+.-.|.+|..+|.+..|...++..++...+
T Consensus       175 ~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        175 DNIEVIRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            334446777889999999999999999999999999      7877778888999999999999999999999887654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.17  E-value=0.5  Score=36.77  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=55.1

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .|..........+|.+...+|.+|+|+....       ...++...+....-.|.++...|+-++|...|++++..
T Consensus       120 ~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         120 KDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            4455566677789999999999888776554       45555556666777899999999999999999999887

>PLN03077 Protein ECB2; Provisional

Probab=95.14  E-value=0.17  Score=48.71  Aligned_cols=97  Identities=16%  Similarity=0.189  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .++..+...|...|+.++|++.|++..+.-  +..   ....+..+-..+.+.|+.++|..+|+...+.   .+..|+ .
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g--~~P---d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P~-~  625 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESG--VNP---DEVTFISLLCACSRSGMVTQGLEYFHSMEEK---YSITPN-L  625 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC---CcccHHHHHHHHhhcChHHHHHHHHHHHHHH---hCCCCc-h
Confidence            345566777888899999999998866421  111   1233445556788889999999999875422   333443 4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                      ..|..+..+|.+.|++++|.+.+++.
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            67888999999999999999888763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.13  E-value=0.09  Score=49.27  Aligned_cols=88  Identities=23%  Similarity=0.255  Sum_probs=57.1

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965          144 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  223 (245)
Q Consensus       144 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~  223 (245)
                      ..++|.+|.....+.++..|+      ...+..--|.+..++|++++|...++. +...     .+.....+..+-.+|.
T Consensus        21 d~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~-----~~~D~~tLq~l~~~y~   88 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEA-LYGL-----KGTDDLTLQFLQNVYR   88 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhh-hccC-----CCCchHHHHHHHHHHH
Confidence            346777777777777776666      555555566677788888888744333 2221     1223445666777788


Q ss_pred             HcCCHHHHHHHHHHHHHHhh
Q 025965          224 ELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       224 ~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|++++|...|++++..+.
T Consensus        89 d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   89 DLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHhhhhHHHHHHHHHHhhCC
Confidence            88888888888888776543

>smart00028 TPR Tetratricopeptide repeats

Probab=95.12  E-value=0.042  Score=28.02  Aligned_cols=29  Identities=31%  Similarity=0.570  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .++..+|.++..+|++++|+..+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35678899999999999999999998876

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=0.97  Score=36.98  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=63.6

Q ss_pred             HHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          136 LKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       136 ~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +..+++-...|  +..+|.-+|++.-+..+.      ....+++.+.+...+|+|++|...++.++.-      ++..++
T Consensus       175 LA~awv~la~ggek~qdAfyifeE~s~k~~~------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpe  242 (299)
T KOG3081|consen  175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPP------TPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPE  242 (299)
T ss_pred             HHHHHHHHhccchhhhhHHHHHHHHhcccCC------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHH
Confidence            33344444433  456666667664442322      5677899999999999999999999999876      777788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFY  235 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y  235 (245)
                      ++.|+-.+-...|.-.++.+.+
T Consensus       243 tL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  243 TLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             HHHHHHHHHHHhCCChHHHHHH
Confidence            9999888888888776665544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.80  E-value=1.1  Score=39.64  Aligned_cols=88  Identities=19%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  218 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l  218 (245)
                      |..-.++.+...|....-.|+..+|.       .....+.-..-...++++.--..|++-|+.      +|....++...
T Consensus       411 A~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~~W~ky  477 (677)
T KOG1915|consen  411 AQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCYAWSKY  477 (677)
T ss_pred             HHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhHHHHHH
Confidence            44444444455554444444444442       122222222333334444444444444444      44444444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 025965          219 ADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       219 a~~y~~~g~~~~A~~~y~~al  239 (245)
                      |..=..+||.|.|...|+-|+
T Consensus       478 aElE~~LgdtdRaRaifelAi  498 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAI  498 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHh
Confidence            444444444444444444444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=1.2  Score=37.85  Aligned_cols=94  Identities=16%  Similarity=0.107  Sum_probs=48.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  217 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~  217 (245)
                      .+......|-|++|.+..++++++    +.  ....+....+.++...|+..++.++..+.-..-+  ...-..+.-|..
T Consensus       181 yaFgL~E~g~y~dAEk~A~ralqi----N~--~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyWH  252 (491)
T KOG2610|consen  181 YAFGLEECGIYDDAEKQADRALQI----NR--FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYWH  252 (491)
T ss_pred             HHhhHHHhccchhHHHHHHhhccC----CC--cchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhHH
Confidence            344455556666666666665542    11  1234445556666666666666665554211110  000012233555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 025965          218 IADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       218 la~~y~~~g~~~~A~~~y~~al  239 (245)
                      .|.+|.+-++|+.|.+.|+.-+
T Consensus       253 ~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  253 TALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHhhhcccchhHHHHHHHHHH
Confidence            6777777777777777776543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.71  E-value=0.34  Score=45.03  Aligned_cols=101  Identities=31%  Similarity=0.438  Sum_probs=62.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHH------HHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH--------------
Q 025965          137 KTGKNFLRNQDLEKAFTEFK------AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS--------------  196 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~------~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~--------------  196 (245)
                      ..|.+|-...++++|.++|+      +|+++++- .-+......-..-|.-+..+|+++.|+..|-              
T Consensus       666 kagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~  744 (1636)
T KOG3616|consen  666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIG  744 (1636)
T ss_pred             hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhh
Confidence            34556666677888888654      45555442 2222222222334555666777887777664              


Q ss_pred             -----HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          197 -----MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       197 -----~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                           +++.+.....|.......|..++.-|..+|+++.|.+.|.++
T Consensus       745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence                 344444444454445556777899999999999999988654

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=2.2  Score=35.99  Aligned_cols=110  Identities=12%  Similarity=0.097  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ...+....|..|.+-||-+.|.+.+.+..+-.-.++.......+...+|..|....-..   +..++|-.+.++.||=..
T Consensus       103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWeR  179 (393)
T KOG0687|consen  103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWER  179 (393)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChhh
Confidence            34467788999999999999999999998888888888888888889999886544334   444556667777776332


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .-..--.-|.......++.+|...+-.++..+.
T Consensus       180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence            222223346666777899999998888776654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.51  E-value=0.13  Score=42.78  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          134 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .+...|..-+. .++.+.|...|+.+++.++.      ....+......+...++.+.|-..|++++..   .......-
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~  107 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSK  107 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHH
Confidence            33334444333 33333355555555554444      3333333333444455555555555554433   11111011


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+......=...|+.+...+.++++.+.+
T Consensus       108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen  108 KIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            223333333334455555555555554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.49  E-value=0.78  Score=39.92  Aligned_cols=103  Identities=18%  Similarity=0.084  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CC--------hHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV---KD--------PIE-EKKAARGLGASLQRQGKYREAIKYHSM  197 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---~d--------~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~  197 (245)
                      ....+.+.-|..++++++|..|..-|..|+++..+-   ++        -.. .......+..+|.++++.+-|+..-.+
T Consensus       174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            455666777889999999999999999999988752   11        111 234466899999999999999999999


Q ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       198 al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                      .|.+      +|....-+...|.|+..+..|.+|..-..-+
T Consensus       254 sI~l------nP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  254 SINL------NPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhhc------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988      8888888889999999999998887655444

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=0.13  Score=46.82  Aligned_cols=69  Identities=17%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+.+-+.-.++..+|..|+++|+..++.......+...+....+++.||..+.+.|+|.+++++|-+.
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            345566777889999999999999999987766656667888999999999999999999999998653

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.40  E-value=0.095  Score=29.31  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++|..+|.+-...++|++|.+.|++++++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.40  E-value=0.97  Score=36.79  Aligned_cols=71  Identities=13%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ..........+|..|+..|++++|..+++.+...+..-+=.......+..+-.++...|+.+..+.+.-+.
T Consensus       174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            33445566678999999999999999999998888877777777888899999999999999888776554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=1.4  Score=36.62  Aligned_cols=101  Identities=23%  Similarity=0.226  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VL  199 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~---------------al  199 (245)
                      .+..+.-....|++.+|...+..++...++      ...+...++.++...|+.+.|...+..               -+
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i  210 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI  210 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            344566778889999999999999999888      677888899999999999888766643               23


Q ss_pred             HHHHHcC-------------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          200 QISEREG-------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       200 ~~~~~~~-------------d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ++..+..             .+|+...+-+.+|..|...|+.+.|.+.+-..+..
T Consensus       211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4443322             24566778888999999999999999887665543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.26  E-value=0.33  Score=44.44  Aligned_cols=100  Identities=24%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQI  201 (245)
Q Consensus       132 ~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-----~~~~Ai~~~~~al~~  201 (245)
                      ..+...+|.+|..-     .|.+.|+.+++.+.+-... ........+.+.+|.+|.+..     |++.|+.+|.++-+.
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~-~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK-AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH-HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            34555667776653     6899999999998772111 000113446778888888743     678888888887544


Q ss_pred             HHHcCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 025965          202 SEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS  240 (245)
Q Consensus       202 ~~~~~d~~~~~~a~~~la~~y~~~g---~~~~A~~~y~~al~  240 (245)
                              +.+++.+.+|.+|..-.   |+.+|.++|..|..
T Consensus       323 --------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  323 --------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             --------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence                    34567888899888655   67899999988865

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.21  E-value=0.69  Score=40.94  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      .-.+....++|..|.+.|+-+.    +.++++.....     ......+.+++-.|...+.++++.||-...++.++++.
T Consensus       401 dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman  476 (629)
T KOG2300|consen  401 DLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN  476 (629)
T ss_pred             HHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence            3466677788999998776443    33333322211     12233556688889999999999999999999999985


Q ss_pred             HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+.....+-.+..+|.++...|+..++.+-..-+++..
T Consensus       477 aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  477 AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence            444444555667788999999999999887776666544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.19  E-value=1.1  Score=37.18  Aligned_cols=93  Identities=18%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      ......+.+..+.|...|.+|++-    +..  ....+...|...+. .++.+.|...|+.+++.+      +.....+.
T Consensus         7 ~m~~~~r~~g~~~aR~vF~~a~~~----~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f------~~~~~~~~   74 (280)
T PF05843_consen    7 YMRFMRRTEGIEAARKVFKRARKD----KRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKF------PSDPDFWL   74 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCC----CCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH------TT-HHHHH
T ss_pred             HHHHHHHhCChHHHHHHHHHHHcC----CCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCCHHHHH
Confidence            344555555688888899998731    211  23445566777566 566677999999999883      33444455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          217 AIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .........||.+.|...|++++..+
T Consensus        75 ~Y~~~l~~~~d~~~aR~lfer~i~~l  100 (280)
T PF05843_consen   75 EYLDFLIKLNDINNARALFERAISSL  100 (280)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            55567788999999999999997653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.17  E-value=0.15  Score=30.79  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++++.+|..+.++|+|++|..+.+.+++.-
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e   31 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE   31 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            468889999999999999999999998864

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.16  E-value=4.5  Score=38.53  Aligned_cols=91  Identities=15%  Similarity=0.085  Sum_probs=77.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      -.|.+....|++++|++..+.++...+... ......++..+|.+..-.|++++|..+..++.+++++.+...-...+.+
T Consensus       463 L~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~  541 (894)
T COG2909         463 LRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL  541 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            458888889999999999999999877533 3335667889999999999999999999999999998887777777788


Q ss_pred             HHHHHHHHcCCH
Q 025965          217 AIADCYTELGDL  228 (245)
Q Consensus       217 ~la~~y~~~g~~  228 (245)
                      ..+.+...+|+.
T Consensus       542 ~~s~il~~qGq~  553 (894)
T COG2909         542 QQSEILEAQGQV  553 (894)
T ss_pred             HHHHHHHHhhHH
Confidence            889999999943

>PLN03077 Protein ECB2; Provisional

Probab=94.15  E-value=0.39  Score=46.34  Aligned_cols=91  Identities=18%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------
Q 025965          140 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM----------------------  197 (245)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~----------------------  197 (245)
                      ..+...|+.++|..+|++..+...-..    ....|..+...+.+.|++++|.+.+++                      
T Consensus       597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~  672 (857)
T PLN03077        597 CACSRSGMVTQGLEYFHSMEEKYSITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH  672 (857)
T ss_pred             HHHhhcChHHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence            345666777777777776653322111    124455666666667777776666654                      


Q ss_pred             ----------HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          198 ----------VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       198 ----------al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                                .+++      +|.....|..++.+|...|++++|.+..+...+
T Consensus       673 ~e~~e~~a~~l~~l------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        673 VELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             hHHHHHHHHHHHhh------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence                      2222      455566778888899999999998887766543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.98  E-value=0.092  Score=47.26  Aligned_cols=93  Identities=19%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  218 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l  218 (245)
                      |......|+...|+.....|+...|.-.+     ....+++.+...-|-.-.|-..+.+++.+      ....+..++.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~~~~~  682 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLTFLSL  682 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchHHHhc
Confidence            55556689999999999999887775222     23567888888888889999999999988      44456678899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          219 ADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       219 a~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      |++|..+.+.++|++.++.|++.-
T Consensus       683 g~~~l~l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  683 GNAYLALKNISGALEAFRQALKLT  706 (886)
T ss_pred             chhHHHHhhhHHHHHHHHHHHhcC
Confidence            999999999999999999998753

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.45  Score=40.22  Aligned_cols=100  Identities=18%  Similarity=0.038  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ...+....-..++.+|+.+.....+++.+..-.  .|.........-++..+...|-|++|.+.-++++++      ++.
T Consensus       136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi------N~~  207 (491)
T KOG2610|consen  136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI------NRF  207 (491)
T ss_pred             hhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC------CCc
Confidence            455666667788888999999999999887622  222223444445677788999999999999999999      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                      .+-+....+.+....|+..++.++-.+-
T Consensus       208 D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  208 DCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             chHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            8889999999999999999998876554

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.89  E-value=1  Score=37.33  Aligned_cols=79  Identities=9%  Similarity=0.076  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965          146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  224 (245)
Q Consensus       146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~  224 (245)
                      +.-++-++.+.+.++-.+..+......++..|+|..|...+|-+.+.+++.+.++-+-.+|-.-+..-+-..+|..|-.
T Consensus        89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence            4556777778777777776666666788899999999999999999999988887777666555555555555555543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.82  E-value=2.8  Score=39.36  Aligned_cols=104  Identities=19%  Similarity=0.239  Sum_probs=68.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHH------HHH-------------HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Q 025965          137 KTGKNFLRNQDLEKAFTEFK------AAL-------------ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH--  195 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~------~al-------------~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~--  195 (245)
                      ..+..|...|+|+.|.+.|.      .|+             +++...-.+......|...+.-.-..|+|.+|...|  
T Consensus       770 ~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit  849 (1636)
T KOG3616|consen  770 EIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT  849 (1636)
T ss_pred             HHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence            45667777777777766442      233             333333334444445666666777888888887777  


Q ss_pred             ----HHHHHHHHHcCCcc------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          196 ----SMVLQISEREGEYS------------GSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       196 ----~~al~~~~~~~d~~------------~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                          .++|.++.+.+-+.            ...+.+..+|.-|...|+++.|.+.|-++-+
T Consensus       850 i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  850 IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence                46777777755322            2345677789999999999999988876643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.80  E-value=1.3  Score=33.32  Aligned_cols=85  Identities=19%  Similarity=0.081  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+.....+-...++.+++...+....-+.|+      ....-..-|..+...|++.+|+..++....-      .+..
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~~   77 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APGF   77 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCCC
Confidence            345556667777788999998888887777787      6677777889999999999999999996433      5656


Q ss_pred             HHHHHHHHHHHHHcCCH
Q 025965          212 TEAYGAIADCYTELGDL  228 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~  228 (245)
                      +.+--.++.|+..+||.
T Consensus        78 p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   78 PYAKALLALCLYALGDP   94 (160)
T ss_pred             hHHHHHHHHHHHHcCCh
Confidence            66666778888888875

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.69  E-value=1.1  Score=36.92  Aligned_cols=135  Identities=7%  Similarity=0.053  Sum_probs=80.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      ....++.++++.+..-...          +++  -..++-.+-.+++.+++|++-++.|.+.+...+..-.......+.+
T Consensus        42 ~p~~Al~sF~kVlelEgEK----------geW--GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN  109 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEK----------GEW--GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN  109 (440)
T ss_pred             CHHHHHHHHHHHHhccccc----------chh--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            3456677777777765431          222  2334555678899999999999999999987765211111111222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++-..-....+.+---++|+..++..+...++......-.-+|.+|+..|+|.+-.+..++.-...+
T Consensus       110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq  176 (440)
T KOG1464|consen  110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ  176 (440)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc
Confidence            2211111222333334556666665555554544455566789999999999888777766655543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.59  E-value=1.9  Score=35.31  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=38.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       186 g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.+.+|.-+|++--+   +   .+..+...+.++.|...+|++++|....+.+++.-.
T Consensus       187 ek~qdAfyifeE~s~---k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSE---K---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             hhhhhHHHHHHHHhc---c---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            446677777766322   1   334566788899999999999999999999987643

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.48  E-value=0.045  Score=45.97  Aligned_cols=64  Identities=17%  Similarity=0.222  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +..+-..|.++..+++...|+..+..|+++.++      ...-|-..|.+.+.+|++++|-.++..+.++
T Consensus       148 a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  148 AILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             hhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            445556799999999999999999999999888      6666777788888999999999999998876

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.44  E-value=0.22  Score=40.89  Aligned_cols=62  Identities=16%  Similarity=0.154  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965          151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  224 (245)
Q Consensus       151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~  224 (245)
                      |..+|.+|..+.|.      .+..++.+|.+....|+.=+|+-+|-+++-.      ......+..|+...+.+
T Consensus         1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~------~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV------RIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS------SB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHH
Confidence            67899999999999      7888999999999999999999999999855      33347788899888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.32  E-value=2.3  Score=35.97  Aligned_cols=114  Identities=16%  Similarity=0.139  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHc-
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE-  205 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~-~~~~~-  205 (245)
                      ....+..++..+.+....|+++.|.....++....+...+.  ........+......|+..+|+..++..++ ..... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            34456677888999999999999999999877654322211  344455667888999999999999988887 22221 


Q ss_pred             --------------------------CCcchHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHhh
Q 025965          206 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE  243 (245)
Q Consensus       206 --------------------------~d~~~~~~a~~~la~~y~~~------g~~~~A~~~y~~al~~~~  243 (245)
                                                .+....+.++..+|......      ++.+.+...|+++++..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~  289 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP  289 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence                                      11234566778888887777      888999999999987643

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.32  E-value=4.1  Score=33.96  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      ......+..++|..|.+-++-+.+.+...+.++-+...+-......+-..+|.+|..+.=.++.++..+   .+.++.+|
T Consensus       111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~---~~iEkGgD  187 (412)
T COG5187         111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVAD---DIIEKGGD  187 (412)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHH---HHHHhCCC
Confidence            344566788899999999999999999999998888888777777777788988866655555554444   45566665


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      =...-..-...|.-.....++.+|...+-..+..++
T Consensus       188 WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         188 WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            322222222335555667788888888777766554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.24  E-value=0.14  Score=25.86  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFY  235 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y  235 (245)
                      ++.++|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            4455566666666666665544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.68  E-value=4.2  Score=34.41  Aligned_cols=86  Identities=17%  Similarity=0.108  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHh---------------------------CCChHHHHHHHHHHHHHHHHc
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALE-LAQN---------------------------VKDPIEEKKAARGLGASLQRQ  185 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~---------------------------~~d~~~~~~a~~~lg~~~~~~  185 (245)
                      ..+..+......|+..+|+...+..+. ....                           ..+....+.++..+|......
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            555668889999999999998887776 2211                           112344677888899988888


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          186 ------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       186 ------g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                            ++.++++..|+++.++      .+....+++.+|..+...
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKL------DPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHH
Confidence                  9999999999999999      777777888888887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.65  E-value=2.5  Score=34.97  Aligned_cols=95  Identities=21%  Similarity=0.258  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-------KYREAIKYHSMVLQIS  202 (245)
Q Consensus       134 ~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-------~~~~Ai~~~~~al~~~  202 (245)
                      ..+.+|..|..    ..|+.+|..+|++|.+.-..    .. ..+...+|..+..-.       +...|+.+|.++... 
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~----~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-  184 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV----EA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-  184 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh----hH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-
Confidence            55567777776    45899999999998775322    11 344677777776541       233688888887544 


Q ss_pred             HHcCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          203 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       203 ~~~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                             ....+..++|.+|..    ..|+++|..+|.++-+.
T Consensus       185 -------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         185 -------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             -------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence                   256788899988864    44899999999998753

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.47  E-value=10  Score=36.24  Aligned_cols=114  Identities=17%  Similarity=0.097  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC--HHHHHHHHH----------
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK--YREAIKYHS----------  196 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~--~~~Ai~~~~----------  196 (245)
                      ...+.+....|.+....|++++|..+..++.+.+...........+....+.+...+|+  +.+....+.          
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~  573 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK  573 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            34566777889999999999999999999999988877777777777777777777773  222222221          


Q ss_pred             ----------------------------HHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          197 ----------------------------MVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       197 ----------------------------~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                                                  ++++.-......+ ...-+++.++.++..+||+++|....+......
T Consensus       574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence                                        1111111111111 222234589999999999999998888776554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.43  E-value=4  Score=36.03  Aligned_cols=52  Identities=27%  Similarity=0.408  Sum_probs=44.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          179 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       179 g~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                      +..++.+|+|.++.-+-.=..++      .| .+.+|..+|.|.....+|++|..++.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~i------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKI------AP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHh------CC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            34468899999999888777777      66 678999999999999999999998864

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.40  E-value=0.21  Score=25.17  Aligned_cols=23  Identities=30%  Similarity=0.251  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 025965          174 AARGLGASLQRQGKYREAIKYHS  196 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~  196 (245)
                      +..++|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566667777777777766554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.33  E-value=2.7  Score=30.80  Aligned_cols=71  Identities=15%  Similarity=0.294  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          134 SRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~---~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ..++++++.....+.   .+.+..++..++    ..++.....+.+.|+..+++.++|+.|+.|.+..++.      +|+
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~------e~~  103 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET------EPN  103 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh------CCC
Confidence            455566666554443   344555555443    3445556778889999999999999999999998887      555


Q ss_pred             HHHH
Q 025965          211 STEA  214 (245)
Q Consensus       211 ~~~a  214 (245)
                      +.++
T Consensus       104 n~Qa  107 (149)
T KOG3364|consen  104 NRQA  107 (149)
T ss_pred             cHHH
Confidence            5444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.29  E-value=4.2  Score=31.31  Aligned_cols=101  Identities=15%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ..+.+..|.+....|+...|+.+|.++-...   .-+.. .-.+...-+..+...|-|++-..-.+.   +  ....+|.
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep---L--a~d~n~m  165 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP---L--AGDGNPM  165 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHHhccccHHHHHHHhhh---c--cCCCChh
Confidence            4567778999999999999999999854322   21221 233445566778888888875554433   1  1223566


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ...+...+|..-++-||+.+|.+.|.+..+
T Consensus       166 R~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            777888999999999999999999987654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.29  E-value=4.4  Score=35.08  Aligned_cols=97  Identities=15%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~---~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      +=..|....+|+.=+...+..-.+ |... ...........|.++.+   .|+.++|+..+..++.-     +....++.
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-----~~~~~~d~  219 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-----DENPDPDT  219 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-----cCCCChHH
Confidence            345577777877766666543322 2111 11133445566777777   99999999999997443     24456788


Q ss_pred             HHHHHHHHHH---------cCCHHHHHHHHHHHHHH
Q 025965          215 YGAIADCYTE---------LGDLERAARFYDKYISR  241 (245)
Q Consensus       215 ~~~la~~y~~---------~g~~~~A~~~y~~al~~  241 (245)
                      +..+|++|..         ...+++|+.+|.++.+.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            9999999964         22468888998888764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.19  E-value=1.6  Score=34.21  Aligned_cols=84  Identities=17%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965          142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  221 (245)
Q Consensus       142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~  221 (245)
                      ++.+-.-+.|...|.++ +-.+.+    ..++....+|..|. ..|.++|+..+.+++++....  +.-+++.+..++.+
T Consensus       116 ~Wsr~~d~~A~~~fL~~-E~~~~l----~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~  187 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQL-EGTPEL----ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASI  187 (203)
T ss_pred             HhhccCcHHHHHHHHHH-cCCCCC----CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHH
Confidence            33443446666666543 111222    23556677776665 679999999999999985532  13457889999999


Q ss_pred             HHHcCCHHHHHH
Q 025965          222 YTELGDLERAAR  233 (245)
Q Consensus       222 y~~~g~~~~A~~  233 (245)
                      |..+|++++|.-
T Consensus       188 ~~~~~~~e~AYi  199 (203)
T PF11207_consen  188 YQKLKNYEQAYI  199 (203)
T ss_pred             HHHhcchhhhhh
Confidence            999999999864

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.18  E-value=1.6  Score=38.50  Aligned_cols=62  Identities=23%  Similarity=0.299  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  197 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~  197 (245)
                      ..+..-.+.-|...+..|+|.++.-+-.=..+++|+       ..+++-+|.+.....+|++|..++.+
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            334445555677788999999999888777778885       78999999999999999999999887

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.06  E-value=2.9  Score=30.66  Aligned_cols=68  Identities=18%  Similarity=0.161  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          171 EKKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~---~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ...+..++++++.+..+.   .+.+..++..++    ..++...-++.+.++..+..+|+|+++..|.+..++.-
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            456677888888776554   456666666554    22234566788999999999999999999999888753

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.98  E-value=1.6  Score=39.10  Aligned_cols=80  Identities=20%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYIS  240 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~-~~~d~~~~~~a~~~la~~y~~~g~-~~~A~~~y~~al~  240 (245)
                      +.+.|.....--+.-+|.+..+.|+...|..+|+.+.+-.. +..|....+-+++-+|..|..+|. ..+|..++.+|-+
T Consensus       440 ~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~  519 (546)
T KOG3783|consen  440 PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE  519 (546)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence            34456666666677899999999999999999998875433 345566788999999999999999 9999999999977


Q ss_pred             Hh
Q 025965          241 RL  242 (245)
Q Consensus       241 ~~  242 (245)
                      ..
T Consensus       520 ~~  521 (546)
T KOG3783|consen  520 YA  521 (546)
T ss_pred             hc
Confidence            65

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=91.91  E-value=0.98  Score=44.42  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCC
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER--EGE  207 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~--~~d  207 (245)
                      +..+..++.++...+++++|+.+-.+|.-+....  .|+......+.+++......++...|+..+.++..+..-  ..+
T Consensus       973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen  973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred             HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence            3445567889999999999999999888777654  467778888999999999999999999999888665332  235


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .|..+....+++.++...++++.|..+.+.|.+.-
T Consensus      1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            77788888999999999999999999999998743

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.89  E-value=7.1  Score=39.26  Aligned_cols=97  Identities=18%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .+..+..+|...+++++|.++++..++-...      ....+...|..+.++.+-+.|-..+.+|++...+.    ....
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~----eHv~ 1601 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ----EHVE 1601 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh----hhHH
Confidence            4445566666666777777777666655553      45555566666666666666666666666654321    1222


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ...-.|.+-++.||-+++...|+..+.
T Consensus      1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence            333345555555555555555544443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.86  E-value=3.1  Score=39.51  Aligned_cols=82  Identities=16%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +....|....++|+.++|....+. +..-+.   +  ....+--+-.+|.++|++++|...|++++..      .|+ -.
T Consensus        45 a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~---~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~------~P~-ee  111 (932)
T KOG2053|consen   45 AKVLKALSLFRLGKGDEALKLLEA-LYGLKG---T--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK------YPS-EE  111 (932)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHhh-hccCCC---C--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------CCc-HH
Confidence            344458888999999999854443 332221   1  3344556778899999999999999999877      454 33


Q ss_pred             HHHHHHHHHHHcCCH
Q 025965          214 AYGAIADCYTELGDL  228 (245)
Q Consensus       214 a~~~la~~y~~~g~~  228 (245)
                      ..+.+=.+|..-++|
T Consensus       112 ll~~lFmayvR~~~y  126 (932)
T KOG2053|consen  112 LLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333444444444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.80  E-value=0.9  Score=40.70  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=74.7

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~---~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ...|+--+..+....|+..|.+++...+.      ....+.+.+.++.+   .|+--.|+.....|+++      ++...
T Consensus       378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~~  445 (758)
T KOG1310|consen  378 KTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSIQ  445 (758)
T ss_pred             HhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHHH
Confidence            33444444556677888889999888877      77778887777765   45667788888888888      89999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+++.|+++..+++.+.+|+++...+...+
T Consensus       446 kah~~la~aL~el~r~~eal~~~~alq~~~  475 (758)
T KOG1310|consen  446 KAHFRLARALNELTRYLEALSCHWALQMSF  475 (758)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhhHHHHhhcC
Confidence            999999999999999999999887665544

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=91.51  E-value=7.9  Score=32.89  Aligned_cols=96  Identities=13%  Similarity=0.132  Sum_probs=71.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHH
Q 025965          143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADC  221 (245)
Q Consensus       143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~~a~~~la~~  221 (245)
                      .+.+|.++|+++.++..+.....+.+.........+|.++...||.+++.+.....-+......+-+. ....||.++.-
T Consensus        86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq  165 (380)
T KOG2908|consen   86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ  165 (380)
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence            34468999999999999988888887778888889999999999999999988887776655544443 55556666554


Q ss_pred             -HHHcCCHHHHHHHHHHH
Q 025965          222 -YTELGDLERAARFYDKY  238 (245)
Q Consensus       222 -y~~~g~~~~A~~~y~~a  238 (245)
                       |...|++.......-++
T Consensus       166 Yyk~~~d~a~yYr~~L~Y  183 (380)
T KOG2908|consen  166 YYKKIGDFASYYRHALLY  183 (380)
T ss_pred             HHHHHHhHHHHHHHHHHH
Confidence             55677776554443333

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.47  E-value=4.2  Score=35.38  Aligned_cols=110  Identities=11%  Similarity=-0.043  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..+++...+|-..|+...-...+..-+..+.--.|....+...+-+=..|..-+.|++|-..-.++- . .+...+...
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~-pe~~snne~  246 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-Y-PEAASNNEW  246 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-C-ccccccHHH
Confidence            44566677777777776555555555555544333555566566666677777788888877766642 1 111122356


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +...+.+|....-++||..|.+++-+|+....
T Consensus       247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            67788889999999999999999988877553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.36  E-value=1.6  Score=39.92  Aligned_cols=92  Identities=29%  Similarity=0.420  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHc
Q 025965          134 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE  205 (245)
Q Consensus       134 ~~~~~g~~~~~~g-----~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g---~~~~Ai~~~~~al~~~~~~  205 (245)
                      +.+.+|.+|....     ++..|..+|.++-+.-        ...+.+.+|.++..-.   |+..|.++|..|.+     
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-----  356 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-----  356 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence            3456788888743     6788999988876542        3566778888876654   67899999999853     


Q ss_pred             CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          206 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                         .+...+.+++|.+|..    ..+.+.|..+|+++.+.
T Consensus       357 ---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  357 ---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK  393 (552)
T ss_pred             ---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence               3456789999999874    35789999999998764

>PRK10941 hypothetical protein; Provisional

Probab=91.33  E-value=3.3  Score=34.21  Aligned_cols=65  Identities=12%  Similarity=0.049  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      -.....++=.+|...++++.|....+..+.+.|+      ...-.+..|.+|.+.|.+..|...++..++.
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            3344556778899999999999999999999998      7777888999999999999999999998877

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.30  E-value=11  Score=33.92  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  197 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~  197 (245)
                      ...++...+|.+....|+.++|++.++..++..+.    ........++-.++...+.|.++-..+.+
T Consensus       257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~----~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN----LDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc----cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34566678899999999999999999998876552    11445788999999999999999888877

The molecular function of this protein is uncertain.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.84  E-value=1.3  Score=29.99  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH
Q 025965          152 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA  231 (245)
Q Consensus       152 ~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A  231 (245)
                      +..++++++..|+      ...+.+.++..+...|++++|++.+-..++.....++    ..+.-.+=.++..+|.-+--
T Consensus         8 ~~al~~~~a~~P~------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~----~~ar~~ll~~f~~lg~~~pl   77 (90)
T PF14561_consen    8 IAALEAALAANPD------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYED----DAARKRLLDIFELLGPGDPL   77 (90)
T ss_dssp             HHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC----CHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc----cHHHHHHHHHHHHcCCCChH
Confidence            4556777777776      7788999999999999999999999888766332222    23445556667777775544


Q ss_pred             HHHHHHH
Q 025965          232 ARFYDKY  238 (245)
Q Consensus       232 ~~~y~~a  238 (245)
                      ..-|.+-
T Consensus        78 v~~~RRk   84 (90)
T PF14561_consen   78 VSEYRRK   84 (90)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.83  E-value=4.9  Score=37.09  Aligned_cols=111  Identities=16%  Similarity=0.144  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH----------------------------------
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR----------------------------------  176 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~----------------------------------  176 (245)
                      -...+..+|..|.+.|.+++|...|++++..--...|....-.+|.                                  
T Consensus       247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            3456667899999999999999999888864433333222111110                                  


Q ss_pred             -------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH
Q 025965          177 -------------------------GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA  231 (245)
Q Consensus       177 -------------------------~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A  231 (245)
                                               .+-.+-...|++.+-+..|.+|++.-.=..-.-.....+..+|..|...|+.+.|
T Consensus       327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a  406 (835)
T KOG2047|consen  327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA  406 (835)
T ss_pred             HHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence                                     1111122334566666677766543210000112345678899999999999999


Q ss_pred             HHHHHHHHHH
Q 025965          232 ARFYDKYISR  241 (245)
Q Consensus       232 ~~~y~~al~~  241 (245)
                      ...++++...
T Consensus       407 Rvifeka~~V  416 (835)
T KOG2047|consen  407 RVIFEKATKV  416 (835)
T ss_pred             HHHHHHhhcC
Confidence            9999998763

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.69  E-value=8.3  Score=31.65  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCCcchHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~-~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .++.-+....+.|++..|.+...-.++.+...+.+.... ...++..+....+.-+ +=....+++++-.+..+...+.+
T Consensus        12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp   90 (260)
T PF04190_consen   12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP   90 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence            333446778888999999888777777777655444332 3356666666554333 45566677888774444455788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYD  236 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~  236 (245)
                      ..|..+|..|.+-|++.+|..++-
T Consensus        91 ~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   91 ELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHH
Confidence            999999999999999999998873

; PDB: 3LKU_E 2WPV_G.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=90.61  E-value=4.9  Score=28.91  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=33.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~---------~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .+|......+++-.|+-.|++|+.+.++.....         -......|+|..+...||.+-..+|++-|-+
T Consensus         6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE   78 (140)
T PF10952_consen    6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE   78 (140)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence            344444455555555555555555544432000         1122355667777777777766666665544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.43  E-value=7.2  Score=32.36  Aligned_cols=66  Identities=21%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ...++..+...+...|+++.+++.+++.+..      +|-.-..|..+=..|...|+...|+..|++.-+..
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~  217 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL  217 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence            5677889999999999999999999999988      78778889999999999999999999998876643

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=90.27  E-value=1.1  Score=37.52  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+.+.-..+.|+.++|...|+.|+.+      .|..++++..+|......++.=+|.++|-+|+.+
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            344455567889999999999999999      8888999999999999999999999999988754

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.20  E-value=10  Score=33.47  Aligned_cols=105  Identities=16%  Similarity=0.018  Sum_probs=80.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc----
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE----  205 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~-------~~Ai~~~~~al~~~~~~----  205 (245)
                      .+|..++..+||+.|...|+.+..-+.+.+.....+.++...|.+....+..       ++...+++.|+..+.+.    
T Consensus       213 ~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~  292 (414)
T PF12739_consen  213 RLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPR  292 (414)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccc
Confidence            5799999999999999999999987776666666777777788888777744       37778888888887762    


Q ss_pred             CC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          206 GE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       206 ~d-~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .. ......+....+.++...|.+.+|...+-+....
T Consensus       293 ~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  293 CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            11 2245556777788888999988887777666544

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.98  E-value=5.1  Score=34.85  Aligned_cols=102  Identities=14%  Similarity=0.122  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--cchH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE--YSGS  211 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d--~~~~  211 (245)
                      ++..+|..|..-|+.+.|++.|-++.+...+.+   .....+.|+-.+...+|+|..-..+-.+|.........  ....
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            455679999999999999999999888776633   35556677777788889999999998888776311000  1112


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                      +...+.-|.+...+++|+.|.+++-.+
T Consensus       229 ~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  229 AKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            234555566777778999998887543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=89.86  E-value=11  Score=37.67  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=94.2

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      -+.......+.+++...+..++...|...+.+++.+..-.  .+.........+++..+...++++.|+.+.+.|+...+
T Consensus      1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred             CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            4556677788888999999999999999988887765422  23444556678899999999999999999999999777


Q ss_pred             HcCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          204 REGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       204 ~~~d--~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +...  ....+..+..+++++...+++..|....+....++.
T Consensus      1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred             hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence            6432  335677899999999999999999999988887764

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=89.85  E-value=5.4  Score=28.70  Aligned_cols=67  Identities=16%  Similarity=0.273  Sum_probs=52.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--ChHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVK--DPIE-------EKKAARGLGASLQRQGKYREAIKYHSMVLQIS  202 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--d~~~-------~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~  202 (245)
                      ..+|...+..+++-.++-+|++|+.+..++.  +...       ......|++..++.+||.+-.++|++-|-+.-
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V   80 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV   80 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            3468888999999999999999999998863  1111       22347799999999999999999998765443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.82  E-value=17  Score=33.82  Aligned_cols=111  Identities=13%  Similarity=0.090  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL-GASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~l-g~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      .+..+...++.++...+... |....++.++..+..+..... .++.-+ .......+|+..|++.++.....+...+|.
T Consensus        98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~  175 (608)
T PF10345_consen   98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP  175 (608)
T ss_pred             HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence            34555556689999887776 999999999998875544433 333333 222323389999999999999999888887


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .....+....|.+....+..+.+.+..++++...
T Consensus       176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~  209 (608)
T PF10345_consen  176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA  209 (608)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence            7777777777888888888888888888886544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.71  E-value=10  Score=31.29  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHh----CC---Ch-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          130 EELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN----VK---DP-IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  200 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~----~~---d~-~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~  200 (245)
                      .-+..+++.|...+..+ +++.|..++++|.++.+.    ..   +. .....++..++.++...+.++...+ ..++++
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~  111 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence            45667889999999999 999999999999999633    11   11 3456778999999999988865444 455555


Q ss_pred             HHHH-cCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          201 ISER-EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       201 ~~~~-~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+. .++.+...  +..+-.+. ..++.+.+.+.+.+.+...
T Consensus       112 ~l~~e~~~~~~~~--~L~l~il~-~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  112 LLESEYGNKPEVF--LLKLEILL-KSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHhCCCCcHHH--HHHHHHHh-ccCChhHHHHHHHHHHHhc
Confidence            5543 33333322  12222222 2678888888887777643

It is also involved in sporulation [].

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=89.52  E-value=8.1  Score=32.71  Aligned_cols=77  Identities=13%  Similarity=0.031  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965          148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  224 (245)
Q Consensus       148 ~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~  224 (245)
                      -++-++.+.+.++-+.+........++..+.|..|.+.||-+.|++.+++..+-.-..|..-+..-+...+|..|..
T Consensus        80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D  156 (393)
T KOG0687|consen   80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD  156 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc
Confidence            35556677777777766555666889999999999999999999999999887766667666666666667766653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.25  E-value=4.9  Score=29.95  Aligned_cols=83  Identities=23%  Similarity=0.155  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .+......-...++++++........-+.|+      ....-.--|.++...|++++|+..++...+-      .+..+.
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~   79 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPY   79 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchH
Confidence            3334444555578899988888877777787      5555566788999999999999999986443      334455


Q ss_pred             HHHHHHHHHHHcCCH
Q 025965          214 AYGAIADCYTELGDL  228 (245)
Q Consensus       214 a~~~la~~y~~~g~~  228 (245)
                      +--.++.|..-+||.
T Consensus        80 ~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        80 GKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHHHHhcCCh
Confidence            555677788878774

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.95  E-value=2.7  Score=37.34  Aligned_cols=90  Identities=17%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHH
Q 025965          143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADC  221 (245)
Q Consensus       143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~  221 (245)
                      ..+++++.....|++-++..|.      .+.+..+.|..-...|+.+.|-..|+-|++-..  -|.| ....+|.   +-
T Consensus       448 lqL~efDRcRkLYEkfle~~Pe------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~--ldmpellwkaYI---dF  516 (677)
T KOG1915|consen  448 LQLREFDRCRKLYEKFLEFSPE------NCYAWSKYAELETSLGDTDRARAIFELAISQPA--LDMPELLWKAYI---DF  516 (677)
T ss_pred             HHHhhHHHHHHHHHHHHhcChH------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc--cccHHHHHHHhh---hh
Confidence            4567889999999999998888      899999999999999999999999999876421  1111 1122222   22


Q ss_pred             HHHcCCHHHHHHHHHHHHHHhh
Q 025965          222 YTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       222 y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      =...|++++|...|++.++..+
T Consensus       517 Ei~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  517 EIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             hhhcchHHHHHHHHHHHHHhcc
Confidence            2468999999999999988653

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.92  E-value=13  Score=32.42  Aligned_cols=95  Identities=25%  Similarity=0.225  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .++.-++.-...|+++.|..-|+..+      .|+......+++|=.--.+.|+++.|..|-..+...      -|....
T Consensus       122 IhlLeAQaal~eG~~~~Ar~kfeAMl------~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~W  189 (531)
T COG3898         122 IHLLEAQAALLEGDYEDARKKFEAML------DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPW  189 (531)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHh------cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCch
Confidence            44445778888899999999998754      344445556777777778899999999999998776      444444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      +....=......||++.|++..+...+
T Consensus       190 A~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         190 AARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            444444456678999999998876654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=88.75  E-value=0.8  Score=36.70  Aligned_cols=55  Identities=15%  Similarity=0.235  Sum_probs=41.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          182 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       182 ~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ....+|.+.|.+.|.+++.+      -|.....+..+|....+.|+++.|...|++.+++-
T Consensus         5 ~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           5 LAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             hcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            34567778888888888777      66667777888888888888888888887777653

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=88.64  E-value=14  Score=32.45  Aligned_cols=106  Identities=13%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             HHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025965           95 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSR--LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  172 (245)
Q Consensus        95 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~  172 (245)
                      +..+..+...|..+++....+..+........++-....++  -.+..+|..+++++.|+.+--+.+.+.|.      ..
T Consensus       189 qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~------~f  262 (569)
T PF15015_consen  189 QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS------YF  262 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc------hh
Confidence            34556666677777777666544444221111222222222  26788999999999999999999888887      55


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      .-+..-+.+++...+|.+|-.-+.-+.=++--.|
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5566778889999999999887777765555443

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.63  E-value=12  Score=31.67  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ--NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      ...-+.....+|.+|-..+++..|...... +.+..  .-.|.......+..+|..|...++..+|..+-.++-=+....
T Consensus        99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~  177 (399)
T KOG1497|consen   99 EEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES  177 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence            344555667889999999999998876542 21111  112233345567889999999999999999888763332222


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .++......-...|++....+++=+|.+.|.+...
T Consensus       178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~  212 (399)
T KOG1497|consen  178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ  212 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32232333333457777778888777777765443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.56  E-value=1.6  Score=28.40  Aligned_cols=30  Identities=10%  Similarity=0.166  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +..+...+.-+-..|++.+|+.+|+++++.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            444666677777777777777777777665

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.51  E-value=1.1  Score=25.91  Aligned_cols=25  Identities=36%  Similarity=0.579  Sum_probs=18.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          216 GAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       216 ~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      +++|.+|...||++.|.+..++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4577778888888888777777764

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.47  E-value=4.8  Score=33.57  Aligned_cols=63  Identities=25%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +...+..|...|.+.+|+.+.++++.+      +|.....+..+-.++..+||--.|.+.|++.-+..+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vle  344 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLE  344 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence            445667789999999999999999999      888888888888899999999999999988766543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=88.36  E-value=15  Score=31.37  Aligned_cols=94  Identities=14%  Similarity=0.074  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                      +.++.-+......++.+..-+.+...-..-..+...|...++|.+|+......++-.++..|.....+.+..-..+|+.+
T Consensus       102 ~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l  181 (411)
T KOG1463|consen  102 DGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHAL  181 (411)
T ss_pred             CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHH
Confidence            44556666777777777664444433344456778899999999999999999999999999888888888888899999


Q ss_pred             CCHHHHHHHHHHHH
Q 025965          226 GDLERAARFYDKYI  239 (245)
Q Consensus       226 g~~~~A~~~y~~al  239 (245)
                      .+..+|...+..|-
T Consensus       182 ~Nl~KakasLTsAR  195 (411)
T KOG1463|consen  182 RNLPKAKASLTSAR  195 (411)
T ss_pred             hcchhHHHHHHHHH
Confidence            99888887766553

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=88.27  E-value=6.4  Score=32.82  Aligned_cols=94  Identities=16%  Similarity=0.141  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                      ..++.-+...+..++.+..-+........-..+...++..|.|.+|+......+.-.++..|.++....|..-..+|...
T Consensus        99 dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~i  178 (421)
T COG5159          99 DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEI  178 (421)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHH
Confidence            44555566666666666553333333344456778899999999999999999999999999998888888889999999


Q ss_pred             CCHHHHHHHHHHHH
Q 025965          226 GDLERAARFYDKYI  239 (245)
Q Consensus       226 g~~~~A~~~y~~al  239 (245)
                      .+..++..-...|-
T Consensus       179 rnv~KskaSLTaAr  192 (421)
T COG5159         179 RNVSKSKASLTAAR  192 (421)
T ss_pred             HhhhhhhhHHHHHH
Confidence            88888877665553

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=88.13  E-value=18  Score=36.72  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+...|...+.+.+-+.|.....+|+...|..+    .......-+..-+..||.+.+-..|+-.+.-      .|-.
T Consensus      1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPKR 1633 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPKR 1633 (1710)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------Cccc
Confidence            34566668888887777788888899998877622    3344455677788889999988888887766      5555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .+.|.-..+.=.+.|+.+.+...|++++.
T Consensus      1634 tDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            55666666666777888888888887775

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=88.02  E-value=2  Score=27.27  Aligned_cols=30  Identities=13%  Similarity=0.189  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +..+...|.-.-..|+|++|+.+|.++++.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344556666777777777777777777654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=87.95  E-value=0.29  Score=41.40  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=79.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------C-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVK--------D-----PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  202 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--------d-----~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~  202 (245)
                      -..|.-.+..++++.|..-|.+++.......        +     .........+++.+-...+++..|+.....+++. 
T Consensus       226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-  304 (372)
T KOG0546|consen  226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-  304 (372)
T ss_pred             hccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc-
Confidence            3467788999999999999999887665211        0     1112234678888999999999999988887773 


Q ss_pred             HHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          203 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       203 ~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                           ++....+++..+..|..+.++++|.+.+..+....
T Consensus       305 -----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~  339 (372)
T KOG0546|consen  305 -----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA  339 (372)
T ss_pred             -----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence                 77788899999999999999999999998886543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=87.77  E-value=19  Score=33.94  Aligned_cols=70  Identities=24%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------cC-------CcchHHHHHHHHHHHHHHcCCHHH
Q 025965          167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER---------EG-------EYSGSTEAYGAIADCYTELGDLER  230 (245)
Q Consensus       167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~---------~~-------d~~~~~~a~~~la~~y~~~g~~~~  230 (245)
                      |......+.+++|..+..+..+++|.++|.+.-.....         -+       .-|.....+--+|..+...|--++
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q  870 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ  870 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence            44556778888888888888888888888654221110         00       012223334457777777787777


Q ss_pred             HHHHHH
Q 025965          231 AARFYD  236 (245)
Q Consensus       231 A~~~y~  236 (245)
                      |.+.|-
T Consensus       871 AV~a~L  876 (1189)
T KOG2041|consen  871 AVEAYL  876 (1189)
T ss_pred             HHHHHH
Confidence            777663

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.75  E-value=2.7  Score=23.07  Aligned_cols=22  Identities=36%  Similarity=0.618  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 025965          174 AARGLGASLQRQGKYREAIKYH  195 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~  195 (245)
                      ...++|..+..+|+|++|+..|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~   24 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFF   24 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHH
Confidence            3556677777777777777773

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=87.71  E-value=1.1  Score=35.99  Aligned_cols=54  Identities=26%  Similarity=0.289  Sum_probs=49.4

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ....++.+.|.+.|.+++++.+.      ....+..+|......|+.+.|...|++++++
T Consensus         5 ~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            44568999999999999999998      7888899999999999999999999999988

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=87.31  E-value=17  Score=31.01  Aligned_cols=102  Identities=15%  Similarity=0.072  Sum_probs=64.9

Q ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~-~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      |+..-....+.-...|+...+..+|......|...+..+--+. ..+..-..-|..+..-.||..|..||-+|.+-+...
T Consensus       163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~  242 (411)
T KOG1463|consen  163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL  242 (411)
T ss_pred             cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence            3333334555557788888888999888888887776654333 344444555677777788999999998888777766


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCH
Q 025965          206 GEYSGSTEAYGAIADCYTELGDL  228 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~  228 (245)
                      +++.....++-.+=.|-..++..
T Consensus       243 ~~~v~A~~sLKYMlLcKIMln~~  265 (411)
T KOG1463|consen  243 DDDVKALTSLKYMLLCKIMLNLP  265 (411)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCH
Confidence            66544444433333333333333

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.30  E-value=2.9  Score=22.92  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH--HHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYD--KYIS  240 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~--~al~  240 (245)
                      +.++.+|-.+...|++++|.+.|+  -+..
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~   31 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA   31 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            456778999999999999999954  4443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.58  E-value=3.1  Score=24.00  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQ  200 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~  200 (245)
                      .+++.+|..+|+++.|.+.+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4678888899999999988888763

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.95  E-value=2.2  Score=28.11  Aligned_cols=30  Identities=10%  Similarity=-0.063  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +..+.+.|..+-..|+.++|+.+|+++++.
T Consensus         8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~   37 (79)
T cd02679           8 AFEEISKALRADEWGDKEQALAHYRKGLRE   37 (79)
T ss_pred             HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence            333444444444455555555555555444

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.80  E-value=20  Score=32.45  Aligned_cols=76  Identities=22%  Similarity=0.088  Sum_probs=63.5

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQI  201 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~  201 (245)
                      +|......-.+..|.+...+|+...|..+|...++-. ....|+...+.+++.+|..+..++. ..++..++.+|-+.
T Consensus       443 ~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  443 DDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            4555667777789999999999999999998777543 3456788889999999999999999 99999999998665

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.68  E-value=7.7  Score=25.26  Aligned_cols=20  Identities=20%  Similarity=0.330  Sum_probs=11.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHH
Q 025965          185 QGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       185 ~g~~~~Ai~~~~~al~~~~~  204 (245)
                      .|+|++|+..|.++++.+..
T Consensus        19 ~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680          19 KGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            35566666666666655554

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.63  E-value=5.3  Score=30.78  Aligned_cols=88  Identities=10%  Similarity=0.026  Sum_probs=53.9

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH--HHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEAYG  216 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~--~~a~~  216 (245)
                      +.-.-..++.++|+.-|...    .+.+...+...+....|.+....|+...|+.+|.++-.-   .. .|..  -.+..
T Consensus        65 AL~lA~~~k~d~Alaaf~~l----ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~-~P~~~rd~ARl  136 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDL----EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TS-IPQIGRDLARL  136 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHH----HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CC-CcchhhHHHHH
Confidence            33344456667776665542    234444555667788899999999999999999986332   11 2221  22334


Q ss_pred             HHHHHHHHcCCHHHHHHH
Q 025965          217 AIADCYTELGDLERAARF  234 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~  234 (245)
                      .-|.+....|-|++-...
T Consensus       137 raa~lLvD~gsy~dV~sr  154 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSR  154 (221)
T ss_pred             HHHHHHhccccHHHHHHH
Confidence            445556677877765543

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=85.57  E-value=8.3  Score=35.03  Aligned_cols=87  Identities=9%  Similarity=0.023  Sum_probs=57.7

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025965          156 KAALELAQNVKDPIEEKKAARGLGASLQ--RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  233 (245)
Q Consensus       156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~--~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~  233 (245)
                      ++.+-+.-+.+.-...+-++.+||.+--  ...+-..++..|.+|+..++..-++. ....|..+|..|+..++|.+|..
T Consensus       261 q~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR~~~~~eA~~  339 (618)
T PF05053_consen  261 QDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYRHKRYREALR  339 (618)
T ss_dssp             HHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHHHHHHHHHHH
Confidence            3444444445555556667777777643  23345668999999999988765433 33457788999999999999999


Q ss_pred             HHHHHHHHhh
Q 025965          234 FYDKYISRLE  243 (245)
Q Consensus       234 ~y~~al~~~~  243 (245)
                      +|..|-+.+.
T Consensus       340 ~Wa~aa~Vi~  349 (618)
T PF05053_consen  340 SWAEAADVIR  349 (618)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9998877654

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=85.11  E-value=5.2  Score=27.01  Aligned_cols=44  Identities=25%  Similarity=0.217  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       192 i~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      +..+++.+.-      +|....+.+.+|..+...|++++|.+.+-..++.
T Consensus         8 ~~al~~~~a~------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen    8 IAALEAALAA------NPDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4456666665      8888999999999999999999999988777654

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.88  E-value=3.3  Score=27.08  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .+..+...+.-.-..|+|++|+.+|.++++.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3445667777888899999999999998776

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.46  E-value=9  Score=31.80  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCCcc
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGEYS  209 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~-~~~~~~d~~  209 (245)
                      ...++..++..+...|+++.++...++-++..|-      .-.++..+-..|...|+...|+..|++.-+ ..+..|-.|
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P  225 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP  225 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence            4455666788888999999999999999888876      677788888899999999999999999876 444444444

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=84.26  E-value=3.9  Score=33.58  Aligned_cols=60  Identities=15%  Similarity=0.039  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       145 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      .-....|.++...|+-.++.-+|...+..+....|..|+...+|+-|-.+|.+|.+.+.+
T Consensus        52 ~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~  111 (368)
T COG5091          52 DATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD  111 (368)
T ss_pred             ccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            346788999999999999999999988888888999999999999999999999998664

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.20  E-value=4.5  Score=25.60  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      .+......|...-..|++++|+.+|.++++....
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3455667788888999999999999999886654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=83.04  E-value=11  Score=35.00  Aligned_cols=95  Identities=9%  Similarity=0.048  Sum_probs=66.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH--
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY--  215 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~--  215 (245)
                      .+..--..|-++.....|++.+++--.      .+..-.|.|..+-...-+++|...|++.+.+++    -|...+.+  
T Consensus       483 y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v~diW~t  552 (835)
T KOG2047|consen  483 YADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERGISLFK----WPNVYDIWNT  552 (835)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccHHHHHHH
Confidence            344455556666666777777766544      566677888888888888999999999998876    55554443  


Q ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          216 -GAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       216 -~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                       ......-+.--..+.|...|++|++..
T Consensus       553 YLtkfi~rygg~klEraRdLFEqaL~~C  580 (835)
T KOG2047|consen  553 YLTKFIKRYGGTKLERARDLFEQALDGC  580 (835)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence             333333344457899999999999854

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.03  E-value=26  Score=29.16  Aligned_cols=95  Identities=19%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                      .++++|+..|++.+++-+.-++  .--.++-.+-.+++++++|++-++.|++.+...+..-.....-.+.+++-+.-...
T Consensus        41 ~~p~~Al~sF~kVlelEgEKge--WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGE--WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            4899999999999998754222  23456777888999999999999999998877664321111122333333333344


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 025965          226 GDLERAARFYDKYISRL  242 (245)
Q Consensus       226 g~~~~A~~~y~~al~~~  242 (245)
                      .+.+--.++|+.-++.+
T Consensus       119 ~~m~LLQ~FYeTTL~AL  135 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDAL  135 (440)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            45555556666555544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=82.90  E-value=25  Score=28.94  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQ-------DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS  202 (245)
Q Consensus       134 ~~~~~g~~~~~~g-------~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~  202 (245)
                      +.+.+|..|..-.       +...|...|.++-...        ...+...+|..|..    ..++++|..+|.++-+. 
T Consensus       150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-  220 (292)
T COG0790         150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-  220 (292)
T ss_pred             HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-
Confidence            3555666666531       2235666676665433        46678888877754    44899999999998654 


Q ss_pred             HHcCCcchHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHH
Q 025965          203 EREGEYSGSTEAYGAIADCYTELG---------------DLERAARFYDKYISR  241 (245)
Q Consensus       203 ~~~~d~~~~~~a~~~la~~y~~~g---------------~~~~A~~~y~~al~~  241 (245)
                           ..  ..+.++++ ++...|               +...|..++.++...
T Consensus       221 -----g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         221 -----GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             -----CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence                 22  66788888 666555               888888888877654

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=82.88  E-value=2.1  Score=35.10  Aligned_cols=59  Identities=15%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       186 g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      -....|.+...+|+-.++..+|......+....+..|+...||+.|..||.+|...+..
T Consensus        53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~  111 (368)
T COG5091          53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD  111 (368)
T ss_pred             cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            45678999999999999999987766667777888999999999999999999987654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.72  E-value=3.6  Score=32.28  Aligned_cols=59  Identities=20%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK  193 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~  193 (245)
                      +...+.+|..|. ..|.++|+..+.+++++.+.  +....++.+..|+.++..+|+++.|--
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence            335555666555 68999999999999998765  224457888999999999999998854

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.31  E-value=7.3  Score=34.13  Aligned_cols=72  Identities=18%  Similarity=0.146  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      +...+.+++...|||..|+...+-. ++.+.   .+-+......++.+|.+|..+++|.+|+..|...+-...+..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4446778899999999998865421 11110   112333556689999999999999999999999987766554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.31  E-value=3.3  Score=36.22  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          174 AARGLGASLQRQGKYREAIKYHSMVLQISER---EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~---~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +..++..++.-.|||..|++..+. +++-++   ....+.....++.+|-+|..+++|.+|+..+...+-...
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~  195 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ  195 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677788899999999998764 222111   111234555789999999999999999999999886553

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=82.18  E-value=6.6  Score=30.52  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=61.7

Q ss_pred             CCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 025965          146 QDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQR-----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  219 (245)
Q Consensus       146 g~~~~A~~-~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~-----~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la  219 (245)
                      |+|-+++. .|++|..+++..-|....+...+.+|.-+..     .++...|++.|+.+-+        .+.+.+-.++|
T Consensus        41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~g  112 (248)
T KOG4014|consen   41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLG  112 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhh
Confidence            55666665 3777777777766777777777877765542     4568888988888754        34567778888


Q ss_pred             HHHHH-----cCC--HHHHHHHHHHHHHH
Q 025965          220 DCYTE-----LGD--LERAARFYDKYISR  241 (245)
Q Consensus       220 ~~y~~-----~g~--~~~A~~~y~~al~~  241 (245)
                      .+...     .+|  .++|..|+.++-+.
T Consensus       113 Ll~~~g~~~r~~dpd~~Ka~~y~traCdl  141 (248)
T KOG4014|consen  113 LLHWNGEKDRKADPDSEKAERYMTRACDL  141 (248)
T ss_pred             hhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence            88764     233  78999999888653

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.17  E-value=3.1  Score=37.91  Aligned_cols=62  Identities=13%  Similarity=0.078  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ...+++++....|-...|-....+++.+.-.      .....+.+|..+....+.+.|++.+++|++.
T Consensus       644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  644 PLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             cHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            4556788888888888999999999988755      6667888999999999999999999999988

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.67  E-value=12  Score=24.42  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      .+..+...|.-.-..|+|++|+.+|..++++...
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            4556667788889999999999999999997754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=81.26  E-value=12  Score=30.88  Aligned_cols=70  Identities=16%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ........++=..+.+.++++.|..+-.+.+.+      .|..+.-..-.|.+|..+|.+.-|++.++..++...+
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~  247 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD  247 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence            335666778888899999999999999999888      7777777778899999999999999998887776543

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.01  E-value=6.9  Score=25.78  Aligned_cols=36  Identities=11%  Similarity=0.163  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      ...+......|..+-..|+.++|+.+|++++.....
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~e   40 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEE   40 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            345566666677777777777777777777666554

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.99  E-value=5.1  Score=26.20  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +..+...|.-.-..|+|++|+.+|.++|+.
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444556666777778888888888777655

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=80.89  E-value=39  Score=29.83  Aligned_cols=117  Identities=5%  Similarity=-0.072  Sum_probs=96.5

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      .+-.......+..+.++....++..|.....+..-..............+..++.++.+.+....++.+.-.++....+.
T Consensus       267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey  346 (482)
T KOG4322|consen  267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY  346 (482)
T ss_pred             chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence            34444556677789999999999999999988877777777777788889999999988888899999998888887777


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+...+.+-.+++.....+|-.++|......++..+
T Consensus       347 ~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~I  383 (482)
T KOG4322|consen  347 SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLI  383 (482)
T ss_pred             ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHH
Confidence            6666677778889999999999999999998887654

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=80.08  E-value=22  Score=27.85  Aligned_cols=104  Identities=22%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHcCCcc----
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL----QISEREGEYS----  209 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al----~~~~~~~d~~----  209 (245)
                      .+......|++++|...+++|.+....++.........++-|.+-..+..|.+|...|.-.-    ....+.+-++    
T Consensus        35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Yi  114 (204)
T COG2178          35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYI  114 (204)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHH
Confidence            35555667899999999999988887755443333445555666666677888877664321    1111111111    


Q ss_pred             -hHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHH
Q 025965          210 -GSTEAYGAI---ADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       210 -~~~~a~~~l---a~~y~~~g~~~~A~~~y~~al~~  241 (245)
                       +.+++-.-+   .......|++++|..+++-.-++
T Consensus       115 lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l  150 (204)
T COG2178         115 LGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL  150 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence             111111111   22234688999999888655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		6e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		1e-04
3ro3_A	164	Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length		4e-04
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		4e-04
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		4e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
           +DP+  E    L  G  + +  D ++A   ++ ALEL     DP    +A   LG +  +
Sbjct: 30  LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 81
Query: 185 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           QG Y EAI+Y+   L++  R      S EA+  + + Y + GD + A  +Y K
Sbjct: 82  QGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 128

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  + +  D ++A   ++ ALEL  N        +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L++      Y  + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LEL------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  + +  D ++A   ++ ALEL     DP    +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334

>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 187
           K  E ++    G  ++   + E A   +K  L LA+ +KD   E ++   LG +      
Sbjct: 45  KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104
Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 245
           Y +AI YH   L I++   +  G   A  ++ + YT LG+ ++A  F +K+  ISR   D
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 232 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 291
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 292 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 332

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	8e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	9e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	9e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-04

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 24/99 (24%), Positives = 43/99 (43%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
             NFL  +  E A + F+ A  +A+  K P    +    +G     Q +Y +AI Y    
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           + + E         +AY  I   + +LG +++A  ++ K
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G   L  ++   A   FK A      VKD IE+ +    +  S     +   ++ Y    
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169

Query: 199 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDK 237
            +I +    Y+    + +   A  + +L   E A   + K
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 203
               +    + A E+ +  +      +  +       +     +Y +AI +      ++E
Sbjct: 158 QTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215

Query: 204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            E +          I  C       E A  ++ + I+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 35/136 (25%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G         E A   FK A+ + +         +A   +     + GK  +A +YHS  
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290

Query: 199 LQIS-----------------------------------EREGEYSGSTEAYGAIADCYT 223
           +  S                                   E +  Y+   +    +A  Y 
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350

Query: 224 ELGDLERAARFYDKYI 239
           E  + ++A+ ++ K  
Sbjct: 351 ERKNFQKASAYFLKVE 366

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 10/91 (10%), Positives = 28/91 (30%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           + +   ++    ++  Q     + E       G     Q +Y  AIK+            
Sbjct: 78  EEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK 137

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +     E +  +++ Y  +     +  +  +
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 64  EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 64.1 bits (157), Expect = 5e-13
 Identities = 19/91 (20%), Positives = 42/91 (46%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           +   A    +  L +A+   D   E+ A   LG +    G++  A +Y+   L ++ +  
Sbjct: 24  NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 84  DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           LG +    G +R+A+  H   L I++  G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   G
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D + A    +  L +A+   D   E++A   LG S    G++ +A +++   L ++   G
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           E     ++  ++ + YT L +   A  ++++
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 22/93 (23%), Positives = 45/93 (48%)

Query: 145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204
            + L +A   ++  L+L +++ D   + +A   LG +    G ++ AI++H   L+I+  
Sbjct: 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255

Query: 205 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            G+ +    A   + + +  LG  E AA  Y +
Sbjct: 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D       F+AA++     +D          LG +    G Y +A++YH   L +++   
Sbjct: 63  DCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +  G  ++ G + +    +G  + AA   ++
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 22/93 (23%), Positives = 47/93 (50%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
             E A   +K  L LA  + +   E ++   LG +     ++  AI+YH+  L I++  G
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
           +  G   A  ++ + ++ +G  ERA ++ ++++
Sbjct: 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 22/98 (22%), Positives = 39/98 (39%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D  KA    K  L LA+++ D + E K++  LG +L+  G++ EA       L ++ + G
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244
           +      A   + + Y   G                E+
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 2/105 (1%)

Query: 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 192
           LS      + L                +                  G  L   G  R  +
Sbjct: 9   LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68

Query: 193 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            +    +Q      +    +  Y  + + Y  LGD  +A +++  
Sbjct: 69  AFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------- 188
           N L+     ++A    +  L LA+ + D + E +A   LG     +GK+           
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 189 ------REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
                   A++++   L++    G+      A G + + Y  LGD + A   + +
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 11/72 (15%), Positives = 14/72 (19%)

Query: 174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 233
           +A     S    G        H    Q        S          +     GD      
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 234 FYDKYISRLESD 245
           F+   I     D
Sbjct: 70  FFQAAIQAGTED 81

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202
            +   A       L +AQ + D I E +A   LG +    G +  A+KY    LQ++
Sbjct: 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           QD EKA       L +AQ + D I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243
           G+ SG   A   ++D    LG             + ++
Sbjct: 341 GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G+   ++ D     + F+AA+++    +D          LG +      Y +A++YH   
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L ++   G+  G  +A G + +    LG+ + A     +
Sbjct: 74  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 26/98 (26%), Positives = 36/98 (36%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 62  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244
           +  G   A   + + Y   G         D      E 
Sbjct: 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------------- 187
           + ++A    +  L++++ + D + E +A   LG     +GK                   
Sbjct: 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161

Query: 188 -YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
             + A+ ++   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 14/88 (15%), Positives = 31/88 (35%)

Query: 150 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 209
           +A     A  +    +  P     A   LG       ++ EA      + Q +++ G+++
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 210 GSTEAYGAIADCYTELGDLERAARFYDK 237
               A   +       G+ + A R + +
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLE 91

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
             ++A   F+A  + AQ   D   E +A   +G   +  G +  A +      ++     
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100

Query: 207 E-YSGSTEAYGAIADCYTELGDLERAARFYDK 237
           E    ++     +A      GDL  A + Y+K
Sbjct: 101 EDPLAASANAYEVATVALHFGDLAGARQEYEK 132

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 147 DLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           + + A   F    EL  ++ +DP+     A  +       G    A + +   L  +++ 
Sbjct: 81  NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            +      A+  + D   +  +L  A + + +
Sbjct: 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 18/81 (22%), Positives = 28/81 (34%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           DL  A  E++ +L  AQ   D +    A RGLG   Q++    EA ++      I     
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181

Query: 207 EYSGSTEAYGAIADCYTELGD 227
           +     E    +         
Sbjct: 182 DSEAVNELMTRLNGLEHHHHH 202

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 18/105 (17%), Positives = 32/105 (30%)

Query: 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
           L      +   DL KA   ++ A  + +N +   +  +        L RQ K+ EA    
Sbjct: 119 LDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL 178

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                + +    Y    +   A         D   A +   +  S
Sbjct: 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
              F   + LE+A   +    E   N +      KA    G  L+   +  EA++Y    
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
             +    G    +  A         E  DL +A   Y +  +  E++
Sbjct: 103 SVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENE 148

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 5/63 (7%), Positives = 19/63 (30%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
              + +   +  +A   +    +          + +A+        +L  +  A ++ +K
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 238 YIS 240
              
Sbjct: 102 ASV 104

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202
           +R Q  ++A    +    + + +++     K           +  Y  A K       I 
Sbjct: 166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

Query: 203 EREGEYSGSTEA--YGAIADCYTELGDLERAARFY-DKYISRLESD 245
                +SGS +      +   Y E  D E+  R      ++ +++D
Sbjct: 226 ----GFSGSEDCAALEDLLQAYDE-QDEEQLLRVCRSPLVTYMDND 266

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D     + F+AA+++    +D          LG +      Y +A++YH   L ++   G
Sbjct: 20  DCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +  G  +A G + +    LG+ + A     +
Sbjct: 78  DQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 25/91 (27%), Positives = 35/91 (38%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 58  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +  G   A   + + Y   G         D 
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------------- 187
           + ++A    +  L++++ + D + E +A   LG     +GK                   
Sbjct: 98  NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157

Query: 188 -YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
             + A+  +   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           QD EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

Query: 206 GE 207
           G+
Sbjct: 337 GD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G      ++  +A   ++ A +    V D IE+ +    +  +     +   ++ +    
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167

Query: 199 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYI 239
           L I +    YS  T ++   IA  Y +    ++A    +  +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
             N+   +  +KA    +AALELA ++++      +   +  S  R G  + A+++    
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243
            ++S  +       +    ++    + G  ++A +F ++ +  + 
Sbjct: 249 AKVSREKVPDLLP-KVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 203
               +      AL++ Q    P+   +  +    +  +      Y +A+ +    L+++ 
Sbjct: 156 QTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213

Query: 204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                     +   IA+ Y   GD + A   + K   
Sbjct: 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA--RGLGASLQRQGKYREAIKYHS 196
                +    +KAF   +  L+          ++     + +      + K  + + Y  
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF- 326

Query: 197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
                 E++  ++       + A  +      E+AA FY K +
Sbjct: 327 ------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 14/97 (14%), Positives = 29/97 (29%)

Query: 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 200
              +        TE    +E  Q     + +  +    G     Q +Y EAI Y+    +
Sbjct: 70  EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129

Query: 201 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
                 +     E +  +A+ Y  +     +     +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
             ++ R+ D + A   F+ A ++++         K   GL  +L + G+ ++A ++    
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287

Query: 199 LQISEREG--EYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L          Y        A+     +   +     +++K
Sbjct: 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
           +     E L  L  G N  +    + A   F+A   L     D   + +   GLGA  Q 
Sbjct: 13  LSEDTLEQLYAL--GFNQYQAGKWDDAQKIFQALCML-----DH-YDARYFLGLGACRQS 64

Query: 185 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244
            G Y +A++ +S    +                 A+C+ +LGDL+ A   +    +   +
Sbjct: 65  LGLYEQALQSYSYGALMD------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 245 D 245
            
Sbjct: 119 Q 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 52/301 (17%), Positives = 87/301 (28%), Gaps = 94/301 (31%)

Query: 5   CDILL--------EGLPAHQQGKVQLRSTTTTFLVVNTL-----MLTTPFKALAETCEAD 51
           C ILL        + L A     + L   + T             L    + L    E  
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVL 323

Query: 52  NSFFNMPLLLFVALIGATVGGLLARQRRGELQRVN-EQLRQINAALRRQAKIESYAP--- 107
            +    P  L  ++I  ++   LA       + VN ++L  I      ++ +    P   
Sbjct: 324 TT---NPRRL--SIIAESIRDGLATWDN--WKHVNCDKLTTI-----IESSLNVLEPAEY 371

Query: 108 -----SLSYAPVGSRIPEDEVIV----DPKKEELLSRLKTGKNFLRNQDL-EKAFTEFKA 157
                 LS  P  + IP   ++     D  K +++  +    N L    L EK   E   
Sbjct: 372 RKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVV----NKLHKYSLVEKQPKESTI 426

Query: 158 AL-ELAQNVKDPIEEKKAARGLGASLQRQ--GKYREA--------------------IKY 194
           ++  +   +K  +E + A       L R     Y                       I +
Sbjct: 427 SIPSIYLELKVKLENEYA-------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 195 HSMVLQISEREGEYS--------------GSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           H   ++  ER   +                 + A+ A       L  L    +FY  YI 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL----KFYKPYIC 535

Query: 241 R 241
            
Sbjct: 536 D 536

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYH 195
           G    +N + + A   F  ALE  + + + +   K       LG   ++  KY EA+ YH
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
              L +  +          Y AI   ++ +G+ E A  ++   + 
Sbjct: 260 RQALVLIPQNA------STYSAIGYIHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G +F    + ++A   +  A +L +    P+        +G         + A ++ S  
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPM------LYIGLEYGLTNNSKLAERFFSQA 185

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           L I+               +     + G+ + A +++   + ++++ 
Sbjct: 186 LSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 19/135 (14%)

Query: 102 IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 161
            + +  +L              +   K E LL+ L  G    + +   +A    + AL L
Sbjct: 213 EKWFLDALEKIK-----AIGNEVTVDKWEPLLNNL--GHVCRKLKKYAEALDYHRQALVL 265

Query: 162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221
                           +G      G +  A+ Y    L +          T +   +  C
Sbjct: 266 IPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLR------RDDTFSVTMLGHC 313

Query: 222 YTELGDLERAARFYD 236
                    A    D
Sbjct: 314 IEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 12/93 (12%)

Query: 145 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 204
               E A      A  L +          A    G S   + ++ +A+  +    Q+   
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGP------AWIAYGHSFAVESEHDQAMAAYFTAAQLM-- 155

Query: 205 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
                G       I   Y    + + A RF+ +
Sbjct: 156 ----KGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
            +    N D +  +      +E        +           +L    K  E       +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLP------VHIGTLVELNKANELFYLSHKL 82

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDK 237
           + +      Y  +  ++ A+   Y  +G   E A R+  K
Sbjct: 83  VDL------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR-GLGASLQRQGKYREAIKYHSM 197
           G       D++ A   F+ AL L +  +   +   A    LG + ++   Y  AI   + 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            L +S      +     + AIA  Y        A     + ++
Sbjct: 542 GLLLS------TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G   ++  ++  A    +++  L Q   DP+        LG     +   + AI +    
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQY--DPL----LLNELGVVAFNKSDMQTAINHFQNA 501

Query: 199 LQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           L + ++           +  +   Y +L   + A    ++ + 
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 12/99 (12%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
                               LE+     D            ASL   G+  +     + +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------LHLASLHESGEKNKLYLISNDL 365

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +        +      + A+   Y  +  +  A R++ K
Sbjct: 366 VDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 12/99 (12%)

Query: 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
           F    + ++A + +  A  L Q    P         LG    + G    A +Y      +
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGTHLPY------LFLGMQHMQLGNILLANEYLQSSYAL 470

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                           +        D++ A   +   + 
Sbjct: 471 F------QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
             + +A   F  +  +            A  G   S   +G++ +AI  ++   ++    
Sbjct: 387 NKISEARRYFSKSSTMDPQFGP------AWIGFAHSFAIEGEHDQAISAYTTAARL---- 436

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             + G+   Y  +   + +LG++  A  +     +
Sbjct: 437 --FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 12/104 (11%)

Query: 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 196
               N   ++D  +   ++ +++   +   D             +L  + ++ + +   +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSD------LLLCKADTLFVRSRFIDVLAITT 329

Query: 197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            +L+I         + + Y        E G+  +     +  + 
Sbjct: 330 KILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
            +  K +      ++       P E+      +G       K  EA +Y S    +    
Sbjct: 353 GEKNKLYLISNDLVDR-----HP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--- 403

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
                   A+   A  +   G+ ++A   Y  
Sbjct: 404 ---PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
           +     + +       +F     +E+A   F+          D         GL A  Q 
Sbjct: 31  IPDDMMDDIYSY--AYDFYNKGRIEEAEVFFRFLCIY-----DF-YNVDYIMGLAAIYQI 82

Query: 185 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
           + ++++A   +++   + +                 C   L    +A   ++  I  
Sbjct: 83  KEQFQQAADLYAVAFALGK------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 6/92 (6%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
                      +   L      P +              +G+  EA  +   +       
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            +Y         +A  Y      ++AA  Y  
Sbjct: 70  VDY------IMGLAAIYQIKEQFQQAADLYAV 95

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYRE 190
           +L   +++ +  +R+     A +++++ ++            ++   +     +  K  E
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 191 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           AI+  S VLQ+         +  A    A+ Y      + A + Y+      E+D
Sbjct: 314 AIRVCSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 22/163 (13%)

Query: 75  ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 134
           AR +RG L     +  +++ A       + +   L   P  +   E +  +  K +E+  
Sbjct: 96  ARLQRGHLLL---KQGKLDEA------EDDFKKVLKSNPSENEEKEAQSQLI-KSDEMQR 145

Query: 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 194
                 N   + D   A       LE+         + +          ++G+ R+AI  
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISD 199

Query: 195 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
                ++       + +TEA+  I+  Y +LGD E +     +
Sbjct: 200 LKAASKLK------NDNTEAFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
           L+ GK  L    L  A ++F AA++      DP +   A           GK + A+   
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDG-----DP-DNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           + V+Q+          T A         + G L+ A   + K + 
Sbjct: 84  TKVIQLK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL------GASLQRQGKYREAI 192
              + +  D E + +E +  L+L Q+ K      K  + L         L R G+Y +A 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277

Query: 193 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +  V++      EY  +  +   I  C+++      A R   + + 
Sbjct: 278 SKYESVMKTEPSIAEY--TVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G + L+  +L +A   F+A  +     ++      A R LG +     K   AI   +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAENEKDGLAIIALNHA 77

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +  +          + A+A  +T   +   A      ++ 
Sbjct: 78  RMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLL 113

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 196
           +    +   ++L  A   F  A +  +   +  E            +  G    A+    
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101

Query: 197 MVLQISEREGEYSGSTEAYGAIADCY-TELGDLERAARFYDKYISRLESD 245
             +QI    G++         + +    +L D  +A   Y+        D
Sbjct: 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSM 197
            K F    +   A    + A+++  +             LG  L      Y +AI  + +
Sbjct: 84  YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143

Query: 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
             +   ++   + S + +   AD     G    A+  Y K I  
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 1/96 (1%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK-YHSMVLQISER 204
            D  KA   ++ A E     +      K            G+Y EA   Y  ++      
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 205 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                   + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALEL----------AQNVKDPIEEKKAARGLG 179
           +E+L +       +      +A + F+  + L              K+     K A  L 
Sbjct: 5   DEMLQK---VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 180 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
            + ++   Y +A  ++  +LQ          + +   A A+     G  + A R Y+K +
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 240 S 240
            
Sbjct: 116 Q 116

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 15/116 (12%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
            P   + L      +  +     + A   ++  L+L     +  +   A   LG      
Sbjct: 84  APNNVDCLEAC--AEMQVCRGQEKDALRMYEKILQL-----EA-DNLAANIFLGNYYYLT 135

Query: 186 G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             + ++ ++     L    +         A              E+A     K I 
Sbjct: 136 AEQEKKKLETDYKKLSSPTK------MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
              + +N++ +KA+  +K  L+ A N  D +E              +G+ ++A++ +  +
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE------ACAEMQVCRGQEKDALRMYEKI 114

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYDKYIS 240
           LQ+       + +  A   + + Y    + E+       K +S
Sbjct: 115 LQLE------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 191
           L   +++ +  +R+     A +++++ ++            ++   +     +  K  EA
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291

Query: 192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           I+  S VLQ+         +  A    A+ Y      + A + Y+    
Sbjct: 292 IRICSEVLQMEPD------NVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           GK  L    L  A ++F AA++      DP +   A           GK + A+   + V
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDG-----DP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           + +          T A         + G L+ A   + K + 
Sbjct: 64  IALK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 187
           K +E+        +     D   A T     LE+         + +          ++G+
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW------DAELRELRAECFIKEGE 169

Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            R+AI       ++       S +TEA+  I+  Y +LGD E +     +
Sbjct: 170 PRKAISDLKAASKLK------SDNTEAFYKISTLYYQLGDHELSLSEVRE 213

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 17/118 (14%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKA---FTEFKAALELAQNVKDPIEEKKAARGLGASL 182
                 + +R      +      + A      + + +   +               G  L
Sbjct: 33  KYNSPYIYNRR--AVCYYELAKYDLAQKDIETYFSKVNATKAKSA------DFEYYGKIL 84

Query: 183 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            ++G+   AI+ +   +         +   + YG I   +   G+   A ++ +K I 
Sbjct: 85  MKKGQDSLAIQQYQAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           GK  ++      A  +++AA++      D          +G+    +G +  AI+Y    
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDR-----DT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++ +      +   + +  +   Y    +  +A   + K + 
Sbjct: 135 IRPT------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 12/102 (11%), Positives = 19/102 (18%), Gaps = 9/102 (8%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
                +N +  +A   F            P                  KY  A K     
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAK--KYNSP----YIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                     S     +        + G    A + Y   + 
Sbjct: 64  FSKVNATKAKS---ADFEYYGKILMKKGQDSLAIQQYQAAVD 102

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG-ASLQRQGKYREAIKYHSM 197
           G+ +  N++  KA + F   LEL  N+          R    A+     K   A  Y+  
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGY----LWRARANAAQDPDTKQGLAKPYYEK 204

Query: 198 VLQISEREGEYSGS--TEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++++    G        EA   IA  YT   D  +A   +   ++
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
               L +   Y EAI+  + +            S   Y   A CY EL   + A +  + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 238 YISRLESD 245
           Y S++ + 
Sbjct: 63  YFSKVNAT 70

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 17/118 (14%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
           D  + ++  ++  G  F    +   A    +  +                  LG +    
Sbjct: 104 DTTRLDMYGQI--GSYFYNKGNFPLAIQYMEKQIRPTTTDPK------VFYELGQAYYYN 155

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER---AARFYDKYIS 240
            +Y +A      VL++             Y   A          +   A  +Y+K I 
Sbjct: 156 KEYVKADSSFVKVLEL------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
            FL  Q   E+A+     A +     +      +    LG    +  K  +A +Y    L
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERS----RVFENLGLVSLQMKKPAQAKEYFEKSL 168

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +++               +AD   +  +   A ++YD +  
Sbjct: 169 RLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           + + A  E++ AL                   G  L  Q +Y EA +      Q +    
Sbjct: 86  EPKLADEEYRKALASDSRNAR------VLNNYGGFLYEQKRYEEAYQRLLEASQDT---- 135

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            Y   +  +  +     ++    +A  +++K + 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
            L+ +   +A   F+ +L L     +   +   A  +   L ++ +Y  A +Y+ +  Q 
Sbjct: 151 SLQMKKPAQAKEYFEKSLRL-----NR-NQPSVALEMADLLYKEREYVPARQYYDLFAQG 204

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
                    +  +            D + AA +  +    
Sbjct: 205 G------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           LG    ++G   +A       L+I         S +A+ A+A  +    + + A   Y K
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEID------PSSADAHAALAVVFQTEMEPKLADEEYRK 96

Query: 238 YIS 240
            ++
Sbjct: 97  ALA 99

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 12/101 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  +L+  + E+A    + ALE+  +  D      A   L    Q + + + A + +   
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSAD------AHAALAVVFQTEMEPKLADEEYRKA 97

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
           L         S +            E    E A +   +  
Sbjct: 98  LASD------SRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 184
           +     E L  L    N  ++   E A   F+A   L     D   + +   GLGA  Q 
Sbjct: 16  ISSDTLEQLYSL--AFNQYQSGXYEDAHXVFQALCVL-----DH-YDSRFFLGLGACRQA 67

Query: 185 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            G+Y  AI  +S    +   E             A+C  + G+L  A         
Sbjct: 68  MGQYDLAIHSYSYGAVMDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQE 117

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.6 bits (122), Expect = 8e-08
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 197
           T     + ++ EK   + +A   +     +P E+ + AR  G     +  +  A+K ++ 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYV-----NP-EKAEEARLEGKEYFTKSDWPNAVKAYTE 164

Query: 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +++ +            Y   A    +L     A    +K I 
Sbjct: 165 MIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  F + +  ++A   +  A EL +++              A+   +G+Y  AI   +  
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAISTLNDA 64

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
           ++              Y  I+  +  +G+         K I
Sbjct: 65  VEQ------GREMRADYKVISKSFARIGNAYHKLGDLKKTI 99

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 13/103 (12%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
            K+F R  +      + K  +E  Q                  L +     + +K     
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSL-------TEHRTADILTKLRNAEKELKKAEAE 131

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
             ++    E +   E        Y    D   A + Y + I R
Sbjct: 132 AYVNP---EKA---EEARLEGKEYFTKSDWPNAVKAYTEMIKR 168

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           + E A +    A+E         E +   + +  S  R G     +      ++      
Sbjct: 53  EYETAISTLNDAVEQ-----GR-EMRADYKVISKSFARIGNAYHKLGDLKKTIEY----- 101

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            Y  S   +   AD  T+L + E+  +  +    
Sbjct: 102 -YQKSLTEHR-TADILTKLRNAEKELKKAEAEAY 133

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           GK +    D   A   +   ++       P E+ +      A+L +   + EAI   +  
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKR-----AP-EDARGYSNRAAALAKLMSFPEAIADCNKA 199

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++    +  +     AY   A     + +   A    D   +
Sbjct: 200 IEK---DPNFV---RAYIRKATAQIAVKEYASALETLDAART 235

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 141 NFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
            FL  +     ++   F  AL              A    G    +QG++  A  Y    
Sbjct: 84  WFLCGRLNRPAESMAYFDKALADPTYPTPY----IANLNKGICSAKQGQFGLAEAYLKRS 139

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243
           L              A+  +A      G L  A  ++ KY SR+E
Sbjct: 140 LAAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G + L+  +L +A   F+A  +       P E ++A R LG +     K   AI   +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQA-----AP-EREEAWRSLGLTQAENEKDGLAIIALNHA 81

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +             + A+A  +T   +   A      ++ 
Sbjct: 82  RMLD------PKDIAVHAALAVSHTNEHNANAALASLRAWLL 117

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
           +  + + + A    + A+EL     D     +    LGA+L    + +EA+  ++  L I
Sbjct: 182 YNLSNNYDSAAANLRRAVEL--RPDDA----QLWNKLGATLANGNRPQEALDAYNRALDI 235

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +       G       +A  Y+ +   + AA+   + I 
Sbjct: 236 N------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 16/108 (14%)

Query: 143 LRNQ-DLEKAFTEFKAALEL---------AQNVKDPIEEKKAARGLGASLQRQGKYREAI 192
             N+ +   A    +A L                D   +    +          +YRE  
Sbjct: 99  HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158

Query: 193 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                 L+++          + + ++   Y    + + AA    + + 
Sbjct: 159 TLLHAALEMN------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G   L+  DL       +AA+       DP  + +A + LG +       + AI      
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQ-----DP-GDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           L++         + +A  A+A  YT     + A      +I 
Sbjct: 126 LELQ------PNNLKALMALAVSYTNTSHQQDACEALKNWIK 161

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
           F  + +  +A   F AAL +    +D          LGA+L    +  EA++ ++  L+I
Sbjct: 223 FHLSGEFNRAIDAFNAALTV--RPEDY----SLWNRLGATLANGDRSEEAVEAYTRALEI 276

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                   G   +   +      LG    A   +   +S
Sbjct: 277 Q------PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 8/92 (8%)

Query: 149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 208
           +   +  +          +P ++   A   G    ++G     I +    +         
Sbjct: 44  QVTVSASEKGYYFHTE--NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------D 95

Query: 209 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            G  EA+  +     E  + + A     + + 
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G    + +D EKA   +  A+EL  +  +            A    + K+ E +++    
Sbjct: 15  GNAAYKQKDFEKAHVHYDKAIEL--DPSNIT----FYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 199 LQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +++  E   +Y    +A     + + +  DL  A +++ + +S
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 12/105 (11%)

Query: 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
           ++      +  D E A               +P +       L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQ-----EP-DNTGVLLLLSSIHFQCRRLDRSAHFS 56

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++ ++            EAY  + + Y E G L+ A   Y   + 
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 143 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
              Q ++  A   F+ A+ L  N  D      A   LG  L+    +  A+  +   L +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           S            +G +A  Y E G ++ A   Y + I 
Sbjct: 233 S------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
           N L+    LE+A   +  A+E   N         A   LG     QG+   AI +    +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAV------AWSNLGCVFNAQGEIWLAIHHFEKAV 196

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            +           +AY  + +   E    +RA   Y + +S
Sbjct: 197 TLD------PNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 143 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
           L+ +  + +A   +  AL L     D      +   L    + QG   EA++ +   L++
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHAD------SLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                       A+  +A    + G L+ A   Y + I 
Sbjct: 335 F------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
           +P   E  S L  G  +     L++A   ++ AL L  +  D          L A+L   
Sbjct: 63  NPLLAEAYSNL--GNVYKERGQLQEAIEHYRHALRLKPDFID------GYINLAAALVAA 114

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           G    A++ +   LQ +               + +    LG LE A   Y K I 
Sbjct: 115 GDMEGAVQAYVSALQYN------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
               +   D+E A   + +AL+   ++            LG  L+  G+  EA   +   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYC------VRSDLGNLLKALGRLEEAKACYLKA 161

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++             A+  +   +   G++  A   ++K ++
Sbjct: 162 IET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 143 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
              Q  ++ A   ++ A+EL      P     A   L  +L+ +G   EA   ++  L++
Sbjct: 247 YYEQGLIDLAIDTYRRAIEL-----QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                      ++   +A+   E G++E A R Y K + 
Sbjct: 301 C------PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
           +P    +L  L       + + L+++      A++      +P    +A   LG   + +
Sbjct: 29  EPDNTGVLLLL--SSIHFQCRRLDRSAHFSTLAIKQ-----NP-LLAEAYSNLGNVYKER 80

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           G+ +EAI+++   L++           + Y  +A      GD+E A + Y   + 
Sbjct: 81  GQLQEAIEHYRHALRL------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
           N L+     ++A   +  AL L+ N             L      QG    AI  +   +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++           +AY  +A+   E G +  A   Y+  + 
Sbjct: 265 ELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G   L+  DL  A   F+AA++      +      A + LG +     +   AI      
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQDPKHME------AWQYLGTTQAENEQELLAISALRRC 124

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           L++         +  A  A+A  +T      +A      ++ 
Sbjct: 125 LELK------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 9/111 (8%)

Query: 127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG 186
            + EE+  R      +L + D +     +    +  +   +P+ +       G    ++G
Sbjct: 22  AELEEMAKRDAEAHPWLSDYD-DLTSATYDKGYQFEEE--NPLRDHPQPFEEGLRRLQEG 78

Query: 187 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
               A+      +Q            EA+  +     E      A     +
Sbjct: 79  DLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQAENEQELLAISALRR 123

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 191
           L    +   + L +    +    F AA+ L     DP        GLG      G+Y +A
Sbjct: 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLSGEYDKA 236

Query: 192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +   +  L +             +  +          E A   Y + + 
Sbjct: 237 VDCFTAALSVR------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
           F  + + +KA   F AAL +      P  +      LGA+L    +  EA+  +   L++
Sbjct: 227 FNLSGEYDKAVDCFTAALSV-----RP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                   G   +   +      LG    A   + + ++
Sbjct: 281 Q------PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
                  +      L+ + +         +  G        + EAIKY+   +++     
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAV--QLKNRGNHFFTAKNFNEAIKYYQYAIEL----- 54

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                   Y  I+ CY   GDLE+   F  K + 
Sbjct: 55  -DPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 22/202 (10%), Positives = 50/202 (24%), Gaps = 15/202 (7%)

Query: 41  FKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQA 100
              L+   + D +     L   +      V      +  G   +V      + +      
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF----- 170

Query: 101 KIESYAPSLSYAPVGSRIPEDEVIVD-PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 159
               +   L  + V +    D          + L         + N  L K+   + + L
Sbjct: 171 -FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229

Query: 160 ELAQNVKDPIEEKKAA-RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218
                     E    A    G     +    +A       + +            +Y  +
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------PNSYIFL 282

Query: 219 ADCYTELGDLERAARFYDKYIS 240
           A    +  + +   +F+ K + 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD 304

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           QD + A  +F+ A  L     +P E       L   L +QGK+ E+  + +         
Sbjct: 324 QDYKNAKEDFQKAQSL-----NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK---- 373

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +    E     A+  T+ GD + A + YD    
Sbjct: 374 --FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 15/115 (13%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
                  L     G       +L  A    + ++ L            +   L  +L  +
Sbjct: 239 RENAALALCYT--GIFHFLKNNLLDAQVLLQESINLHPTPN-------SYIFLALTLADK 289

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
              +E  K+    + ++            Y      Y  L D + A   + K  S
Sbjct: 290 ENSQEFFKFFQKAVDLN------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G +F   ++  +A   ++ A+EL     DP  E      + A     G   + I++ +  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIEL-----DP-NEPVFYSNISACYISTGDLEKVIEFTTKA 85

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L+I          ++A    A     LG+   A      
Sbjct: 86  LEIK------PDHSKALLRRASANESLGNFTDAMFDLSV 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           ++ ++ F  F+ A++L     +P E        G        Y+ A +       ++   
Sbjct: 290 ENSQEFFKFFQKAVDL-----NP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--- 340

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
                +   Y  +A    + G    +  F+++   +
Sbjct: 341 ---PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 16/105 (15%)

Query: 146 QDLEKAFTEFKAALELAQN----------VKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
            D + A  ++  A  L +           +               +   + K+  AIK  
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +   ++  R      S +A   +A    ++  ++ A   ++    
Sbjct: 452 TKACELDPR------SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 187
           K   L  +       L  +    A      A EL     DP   ++A  GL     +  K
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-----DP-RSEQAKIGLAQLKLQMEK 477

Query: 188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 243
             EAI+       ++          E   A    + E   +++  R      +++E
Sbjct: 478 IDEAIELFEDSAILARTMD------EKLQATT--FAEAAKIQKRLRADPIISAKME 525

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 200
              +  D ++A    K   E +   +      +   G   ++  Q          +    
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG---NISEQTLMERLKADATDNTS 209

Query: 201 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++E        +E    +   Y  LGDL+ A   +   ++
Sbjct: 210 LAEH------LSETNFYLGKYYLSLGDLDSATALFKLAVA 243

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)

Query: 120 EDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG 179
               + D ++ +LL     G  +        A  +F  AL +  ++ +          LG
Sbjct: 33  ASRALTDDERAQLLYER--GVLYDSLGLRALARNDFSQALAIRPDMPE------VFNYLG 84

Query: 180 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
             L + G +  A +    VL++            A+          G  + A      + 
Sbjct: 85  IYLTQAGNFDAAYEAFDSVLELD------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138

Query: 240 S 240
            
Sbjct: 139 Q 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 11/97 (11%), Positives = 26/97 (26%), Gaps = 12/97 (12%)

Query: 141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 200
           N      +E+   +      LA+++ +          LG      G    A     + + 
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSE------TNFYLGKYYLSLGDLDSATALFKLAVA 243

Query: 201 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            +        +   +       + LG  +      D+
Sbjct: 244 NN------VHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
              +A   ++ A+      KD  E      GLG++ +  G+YR+A    +  ++      
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAE---CYLGLGSTFRTLGEYRKAEAVLANGVKQ----- 56

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
            +          A     LG  E+      K I+    D
Sbjct: 57  -FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 185 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
            G   +A+ Y+   +    +  + +   E Y  +   +  LG+  +A       + +
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK-KAARGLGASLQRQGKYREAIKYHSM 197
              +  N  L+K    F+  L+  + + D  E   K       +L    +Y E++   + 
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221

Query: 198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 235
            ++IS R    +   + Y    +C  +L   E      
Sbjct: 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 15/119 (12%), Positives = 42/119 (35%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
               E             + +  ++ + +    L+  +   +  +  +    + A + ++
Sbjct: 69  YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK 128

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244
             Y   I     +L       +   +     AIA+ Y E G L++    +++ + +LE+
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           Q+ ++A  +F  A EL     DP E       L     R+ K+ +     S   +     
Sbjct: 318 QNYDQAGKDFDKAKEL-----DP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE- 370

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
                + E     A+  T+  D ++A + YD  I  
Sbjct: 371 -----APEVPNFFAEILTDKNDFDKALKQYDLAIEL 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 15/142 (10%)

Query: 99  QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 158
               ES+  +            ++  +  K    L     G       D   A  + K A
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT--GIFKFLKNDPLGAHEDIKKA 263

Query: 159 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 218
           +EL   V        +   +   +  +    E   Y    L++       S     Y   
Sbjct: 264 IELFPRVN-------SYIYMALIMADRNDSTEYYNYFDKALKLDS---NNS---SVYYHR 310

Query: 219 ADCYTELGDLERAARFYDKYIS 240
                 L + ++A + +DK   
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE 332

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  F RN+  + A   +  ALEL ++             L A     G  ++ ++  +  
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L++          ++     A     LG    A      
Sbjct: 66  LELK------PDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA---RGLGASL 182
            P+  E+ +     +      D +KA  ++  A+EL   +               L    
Sbjct: 368 FPEAPEVPNFF--AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425

Query: 183 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                + EA        ++  R      S +A   +A    +  D++ A   +++   
Sbjct: 426 PTVENFIEATNLLEKASKLDPR------SEQAKIGLAQMKLQQEDIDEAITLFEESAD 477

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 11/115 (9%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
           DP+      +L       R    +   T F  A         P E  +        L  +
Sbjct: 334 DPENIFPYIQL--ACLAYRENKFDDCETLFSEAKRK-----FP-EAPEVPNFFAEILTDK 385

Query: 186 GKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDK 237
             + +A+K + + +++  +                +      + +   A    +K
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            G    R  KY +AIKY++  L++ E           Y  ++ CY  +GDL++      K
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKEDP-------VFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 238 YIS 240
            + 
Sbjct: 65  ALE 67

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 235
           L    + Q KY+EA    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 236 DK 237
            +
Sbjct: 109 KR 110

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 235
           L    Q QGK  E   Y+   L+I     G    +  +    +A CY + G  + A   Y
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 236 DK 237
            +
Sbjct: 193 KE 194

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 235
           L     ++GKY+EA       L+I E+  G++     +    +A      G  E    +Y
Sbjct: 91  LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150

Query: 236 DK 237
            +
Sbjct: 151 RR 152

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 236
                + + K R++  Y        +     S +      ++   Y   G LE A    D
Sbjct: 218 AEEREESKDKRRDSAPYGEYGSWY-KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276

Query: 237 K 237
            
Sbjct: 277 C 277

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 234
           L +   +QGKY++A   +  +L  +  +  G  +G     +    +          +A +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 235 YDK 237
            + 
Sbjct: 235 GEY 237

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
                +   L++A   +K A+ ++           A   +G +L+     + A++ ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPT--FA----DAYSNMGNTLKEMQDVQGALQCYTRA 103

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +QI+          +A+  +A  + + G++  A   Y   + 
Sbjct: 104 IQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
           N  R Q ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   +
Sbjct: 17  NIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +IS          +AY  + +   E+ D++ A + Y + I 
Sbjct: 71  RIS------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G      QD++ A   +  A+++     D      A   L +  +  G   EAI  +   
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQINPAFAD------AHSNLASIHKDSGNIPEAIASYRTA 137

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 242
           L++           +AY  +A C   + D         K +S +
Sbjct: 138 LKLKPDFP------DAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 39.4 bits (91), Expect = 9e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L    + QG   EA++ +   L++      +     A+  +A    + G L+ A   Y +
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 238 YIS 240
            I 
Sbjct: 69  AIR 71

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.8 bits (102), Expect = 8e-06
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 143 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 201
             +  +  ++   F+ A++L     DP EE K     G +L    +Y EA+  ++ V+ +
Sbjct: 16  QYDAGNYTESIDLFEKAIQL-----DP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV 69

Query: 202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            E       + + + A AD    +   E  A   +    
Sbjct: 70  IED----EYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            G      G Y E+I      +Q+   + E S   + +         L   E A   Y+ 
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQL---DPEES---KYWLMKGKALYNLERYEEAVDCYNY 65

Query: 238 YIS 240
            I+
Sbjct: 66  VIN 68

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 235
           L      QG+Y  A+      L+  E+  G            +A  Y +    + AA   
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 236 DK 237
           + 
Sbjct: 93  ND 94

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 235
           L    + Q KY++A    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 236 DK 237
            +
Sbjct: 135 KR 136

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 235
           L    Q QGKY E   Y+   L+I + + G    +  +    +A CY + G  ++A   Y
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 236 DK 237
            +
Sbjct: 219 KE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 235
           L     ++GKY+EA       L+I E+  G+      +    +A      G  E    +Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176

Query: 236 DK 237
            +
Sbjct: 177 QR 178

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 234
           L +   +QGK+++A   +  +L  +     G         +    +     G  +    F
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

Query: 235 YDK 237
            + 
Sbjct: 261 GEY 263

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 236
                + +GK ++   +        +     S +       +   Y   G  E A    +
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWY-KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302

Query: 237 K 237
            
Sbjct: 303 A 303

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 12/94 (12%), Positives = 21/94 (22%), Gaps = 12/94 (12%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           D  +   + +AA+              A   L  +    G            L +     
Sbjct: 4   DGPRELLQLRAAVRHRPQDFV------AWLMLADAELGMGDTTAGEMAVQRGLAL----- 52

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            + G  EA   +            AA    +   
Sbjct: 53  -HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
            P   E ++RL  G+     Q   +A    + A + A            A  LG +L+  
Sbjct: 53  HPGHPEAVARL--GRVRWTQQRHAEAAVLLQQASDAAPEHPG------IALWLGHALEDA 104

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 244
           G+   A   ++   Q+                + +    L D         +  + +  
Sbjct: 105 GQAEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
             L      + A    + A+EL     +   + +A    G  L  +G   EA+   + V 
Sbjct: 133 TVLVKLEQPKLALPYLQRAVEL-----NE-NDTEARFQFGMCLANEGMLDEALSQFAAVT 186

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +         G  +A+      Y    + E+A    DK I 
Sbjct: 187 EQD------PGHADAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 12/102 (11%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
                   D EKA   F  A+E  +                  L    +   A+ ++   
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAI------PYINFANLLSSVNELERALAFYDKA 83

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           L++       S +  AY    + Y      + A   ++K + 
Sbjct: 84  LELD------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
           N    +   ++A   F+ AL          E       LG  L +  + + A+ Y    +
Sbjct: 99  NVYVVKEMYKEAKDMFEKALRA-----GM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +++         TEA      C    G L+ A   +     
Sbjct: 153 ELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
           N L +  +LE+A   +  ALEL     D      A  G G     +  Y+EA       L
Sbjct: 65  NLLSSVNELERALAFYDKALEL-----DS-SAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +          + + +  +     +L   + A  +  + + 
Sbjct: 119 RAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207
           +  +      +  L    +                   G Y +A +  +  ++       
Sbjct: 1   MGSSHHHHHHSSGL--VPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------ 52

Query: 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                  Y   A+  + + +LERA  FYDK + 
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYDKALE 85

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 141 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 193
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 9   NAYYKQGDYDEAIEYYQKALELDPRSAEAWY------------NLGNAYYKQGDYDEAIE 56

Query: 194 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           Y+   L++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 57  YYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
           N    Q D ++A   ++ ALEL     +      A   LG +  +QG Y EAI+Y+   L
Sbjct: 43  NAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIEYYQKAL 96

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           ++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 97  ELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           LG +  +QG Y EAI+Y+   L++         S EA+  + + Y + GD + A  +Y K
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 238 YIS 240
            + 
Sbjct: 61  ALE 63

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
            +  L++ +  +A   F+  +E      DP +       LG   +R  +  +AI  ++  
Sbjct: 14  AQEHLKHDNASRALALFEELVET-----DP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 235
           ++++  EG      +    + D   +   LE     +
Sbjct: 68  IEVAREEGT----QKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 6/64 (9%)

Query: 177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 236
            L     +      A+     +++      +Y      Y  +   Y  L   + A   Y 
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDP---DYV---GTYYHLGKLYERLDRTDDAIDTYA 65

Query: 237 KYIS 240
           + I 
Sbjct: 66  QGIE 69

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 125 VDPKKEELLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQ 183
             PK  E  S L      L N    + A    + A+ L  N  +   +   A  L    +
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMRE 224

Query: 184 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
              +  E  K     L+ +       G T+   + A  Y    + ++A     K + 
Sbjct: 225 EGEEEGEGEKLVEEALEKA------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 24/134 (17%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
           +     + S L            E+A   F+           P+ ++      G     Q
Sbjct: 330 NDNLFRVCSIL--ASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQ 384

Query: 186 GK-YREAIKYHSMVLQISEREGEYSGS------------------TEAYGAIADCYTELG 226
            K   +AI +    ++I+++  E                      +EA   +A       
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444

Query: 227 DLERAARFYDKYIS 240
            +++A    ++ + 
Sbjct: 445 KMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 21/128 (16%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEK 172
            P   ++L      K + R  + +KA    K ALE   N              K      
Sbjct: 243 APGVTDVLRSA--AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 232
               G+    +       A+ +     +                 +A  +      E A 
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQYEEAE 354

Query: 233 RFYDKYIS 240
            ++ K  S
Sbjct: 355 YYFQKEFS 362

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.8 bits (97), Expect = 5e-05
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 141 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 193
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 17  NAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIE 64

Query: 194 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           Y+   L++         + EA+  + + Y + GD + A  +Y K + 
Sbjct: 65  YYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 238 YIS 240
            + 
Sbjct: 69  ALE 71

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 10/101 (9%), Positives = 23/101 (22%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
                     +A    +   +      D       A  LG +  + G      +     L
Sbjct: 16  ISHAKAGRYSQAVMLLEQVYDADAFDVD------VALHLGIAYVKTGAVDRGTELLERSL 69

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
             +        + +    +   Y ++   + A     K   
Sbjct: 70  ADA------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
                    + A        E      +P         LG +L   G++ EAI    + L
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEA-----NP-INFNVRFRLGVALDNLGRFDEAIDSFKIAL 137

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            +           + + AIA  Y ++G  E A   + K   
Sbjct: 138 GLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 13/101 (12%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
                   +++     + +L  A +          A  LG +  +  KY  A+     V 
Sbjct: 50  IAYVKTGAVDRGTELLERSLADAPDNVK------VATVLGLTYVQVQKYDLAVPLLIKVA 103

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           + +        +      +      LG  + A   +   + 
Sbjct: 104 EAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
            G S  + G+Y +A+     V          +   +    +   Y + G ++R     ++
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 238 YIS 240
            ++
Sbjct: 68  SLA 70

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
               L  QG    A++     LQ      E  G  EAY  + + Y +LGD ++A   Y  
Sbjct: 6   TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 238 YIS 240
            I 
Sbjct: 61  AIE 63

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 192
           + +LKT K  +   D+E A    +  L+      +P+ + +A   +G + ++ G +++A+
Sbjct: 1   MDQLKTIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKAL 55

Query: 193 KYHSMVLQI 201
             +   +++
Sbjct: 56  NNYQSAIEL 64

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 140 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMV 198
           K     +++EK   + +  L  AQ       E +A    G +L     Y  EA    S  
Sbjct: 76  KQQDVQEEMEKTLQQMEEVLGSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           +++           EA+  + + Y + GD+  A   +   ++
Sbjct: 130 VKL------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 9/92 (9%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           +  ++A + +  A ++ +      +            + +  Y EA++  S    +    
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPD---LHLNRATLHKYEESYGEALEGFSQAAALD--- 288

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
                  E           L  L        K
Sbjct: 289 ---PAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 13/117 (11%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--------Q 183
           +L +L+T      ++ +  +  + K A+++  +V D     ++   LG +         Q
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDG----RSWYILGNAYLSLYFNTGQ 232

Query: 184 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                ++A+  ++   ++  +        + +   A  +        A   + +  +
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNP---DLHLNRATLHKYEESYGEALEGFSQAAA 286

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 238 YIS 240
            + 
Sbjct: 69  ALE 71

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 207
           ++      +A L    +  + +        LG +     ++  A+ +    L        
Sbjct: 1   MQAITERLEAMLAQGTD--NML----LRFTLGKTYAEHEQFDAALPHLRAALDFDP---T 51

Query: 208 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           YS    A+  +       GD   A + ++  ++
Sbjct: 52  YS---VAWKWLGKTLQGQGDRAGARQAWESGLA 81

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 154 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 213
           ++K AL+    V+DP    +    +G          EA K  +  +   +          
Sbjct: 21  DWKGALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAV 72

Query: 214 AYGAIADCYTELGDLERAARFYDKYISRLESD 245
           AY      Y +    + A +   + + +L  +
Sbjct: 73  AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G  +   +++ +A   F  ++   +++        A    G    +  KY  AIK     
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAV------AYFQRGMLYYQTEKYDLAIKDLKEA 97

Query: 199 LQISER----------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           L                     + E    IA  Y +  + ++A        S
Sbjct: 98  LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
            LE+A +  K A  +     +P          G      G+  +A       L + +   
Sbjct: 99  YLEQALSVLKDAERV-----NP-RYAPLHLQRGLVYALLGERDKAEASLKQALALED--- 149

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
               + E   A+A+ Y  +G L+ A   Y K + 
Sbjct: 150 ----TPEIRSALAELYLSMGRLDEALAQYAKALE 179

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 14/98 (14%)

Query: 141 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 199
                  + +KA    K AL L    +           L       G+  EA+  ++  L
Sbjct: 126 LVYALLGERDKAEASLKQALALEDTPE-------IRSALAELYLSMGRLDEALAQYAKAL 178

Query: 200 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           + +          +     A      G  E AAR    
Sbjct: 179 EQA------PKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           LG  L   G+Y  A+      L+ +          EA   +A    +LG +  A      
Sbjct: 11  LGVQLYALGRYDAALTLFERALKEN------PQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 238 YIS 240
            ++
Sbjct: 65  LVA 67

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
           G +  + +D + A   +  A EL     DP           A    +G Y +  +     
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKEL-----DP-TNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 199 LQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           +++  E   +Y    +AY  I + Y +    + A  FY+K
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 11/109 (10%)

Query: 132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 191
           L+  ++  ++ L  + L    TE    + L +     I      +    S   +GK  E+
Sbjct: 241 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI----IYQIKAVSALVKGKTDES 296

Query: 192 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
            +  +  + +         S   Y  +   Y   G    AA  Y    +
Sbjct: 297 YQAINTGIDLEM-------SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 2/100 (2%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
           +L ++    +   ++A+          +       L  QG  + A +      Q+   + 
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 207 EYSGSTEAYGAI--ADCYTELGDLERAARFYDKYISRLES 244
                   +     A        L+ A       I  L S
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 10/94 (10%), Positives = 22/94 (23%), Gaps = 12/94 (12%)

Query: 147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 206
            +++       A  L      P E+  A    G   Q     +  +        ++    
Sbjct: 359 TVQRLLPVLCQAHGL-----TP-EQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 408

Query: 207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                  A  +       L  ++R      +   
Sbjct: 409 --PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 9/95 (9%), Positives = 23/95 (24%), Gaps = 12/95 (12%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           + +++       A  L      P ++  A    G   Q     +  +        ++   
Sbjct: 290 ETVQRLLPVLCQAHGL-----TP-QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--- 340

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                   A  +       L  ++R      +   
Sbjct: 341 ---PQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 12/95 (12%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
           + +++       A  L      P ++  A        Q     +  +        ++   
Sbjct: 256 ETVQRLLPVLCQAHGL-----TP-QQVVAIASNSGGKQALETVQRLLPVLCQAHGLT--- 306

Query: 206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
                   A  +       L  ++R      +   
Sbjct: 307 ---PQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.66
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.64
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.63
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.62
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.62
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.61
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.6
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.59
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.57
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.56
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.53
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.52
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.52
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.51
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.5
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.48
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.48
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.47
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.47
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.46
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.43
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.42
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.42
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.4
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.39
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.37
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.36
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.36
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.36
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.31
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.31
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.3
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.3
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.27
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.26
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.26
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.26
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.25
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.24
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.23
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.23
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.23
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.21
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.21
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.2
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.2
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.2
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.19
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.18
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.18
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.03
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.03
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.99
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.98
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.97
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.96
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.95
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.94
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.94
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.93
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.91
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.91
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.9
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.88
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.88
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.87
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.87
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.86
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.85
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.84
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.84
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.8
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.75
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.73
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.67
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.64
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.47
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.41
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.33
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.32
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.31
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.26
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.19
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.19
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.19
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.19
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.08
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.06
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.9
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.88
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.84
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.67
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.62
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.57
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.54
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.45
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.23
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.15
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.03
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.01
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.95
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.91
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.56
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.88
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.73
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.64
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.6
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.32
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.96
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.95
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.94
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.67
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.03
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.95
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.58
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.57
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	90.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.39
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.28
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.27
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.78
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.85
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.82
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.05
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.13
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.83
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	84.19
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	83.75
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	83.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	82.18
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	82.01
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.01
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	81.84
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	81.43
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	81.39
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.46
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	80.19

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=2.6e-16  Score=113.86  Aligned_cols=103  Identities=15%  Similarity=0.243  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      +..+..+...|..|+..|+|++|+..|++++++.|.      ...++.++|.++..+|++++|+..|++++++      +
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~   77 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRL------D   77 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh------h
Confidence            345677888999999999999999999999999888      7889999999999999999999999999999      8


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |..+.+++++|.+|..+|++++|.++|+++++.-+
T Consensus        78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            88899999999999999999999999999998754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.70  E-value=4e-15  Score=109.81  Aligned_cols=138  Identities=23%  Similarity=0.311  Sum_probs=123.4

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.          .++....+.++..+|.++...|++++|+.++++++++.+..+++.....++.
T Consensus        24 ~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   93 (164)
T 3ro3_A           24 NFRDAVIAHEQRLLIAKE----------FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY   93 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH----------hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            456666667777776654          2555667778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ++|.++...|++++|+.++++++++.++.++.+..+.++.++|.+|...|++++|.++++++++..++
T Consensus        94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888999999999999999999999999999998753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.68  E-value=1.2e-15  Score=110.51  Aligned_cols=108  Identities=16%  Similarity=0.341  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-C
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-E  207 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~-d  207 (245)
                      ...+.++..+|..++..|+|++|+.+|++|+++.|+      ...++.++|.++..+|+|++|+..+++++++..... +
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            345677888999999999999999999999999887      788999999999999999999999999999976643 3


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+..+.++.++|.+|..+|++++|+++|++++...
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            44567899999999999999999999999999753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.68  E-value=5.5e-15  Score=121.79  Aligned_cols=139  Identities=15%  Similarity=0.121  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH
Q 025965           94 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  173 (245)
Q Consensus        94 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~  173 (245)
                      ...+.+.++..|.+++...+.          .++....+.++.++|.+|..+|++++|+.+|++|+++.+..++......
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            334667788888888887665          3566667888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          174 AARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       174 a~~~lg~~~~~~-g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++.++|.++... |++++|+.+|++++++....++......++.++|.+|..+|++++|+.+|+++++..
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  188 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999999999996 999999999999999988777766667889999999999999999999999999865

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=7.9e-16  Score=114.98  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      +.....++.+|..++..|++++|+..|++++++.|.      ...++.++|.++..+|+|++|+..|++++++      +
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l------~  100 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL------G  100 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------S
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------C
Confidence            345668889999999999999999999999999998      8889999999999999999999999999999      8


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |..+.+++++|.+|..+|++++|..+|+++++...
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88889999999999999999999999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.67  E-value=8.6e-15  Score=124.64  Aligned_cols=136  Identities=13%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAA  175 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~a~  175 (245)
                      +.+.++..+.+++.....          .++....+.++..+|.+|...|++++|+.++++|+++.+..++ ......++
T Consensus       118 ~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIF----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            455556666666655443          2445556666777777777777777777777777777777665 55566677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .++|.++..+|+|++|+.+|++++++.++.++.+..+.++.++|.+|..+|++++|..+|+++++..
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777666677777777777777777777777777777654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.66  E-value=8.4e-15  Score=120.56  Aligned_cols=136  Identities=15%  Similarity=0.111  Sum_probs=117.6

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CChHHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAAR  176 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~~~~a~~  176 (245)
                      .+.++..+.+++.....          ..+....+.++..+|.+|...|++++|+.+|+++++..+.. .+......+++
T Consensus       131 ~~~Ai~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          131 YEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHHHHHHHHHTCCC----------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc----------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            45566666666664333          23344566778899999999999999999999999999988 67777888999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~~~  243 (245)
                      ++|.++..+|+|++|+.++++++++.++.++....+.+++++|.+|..+| ++++|.++|++|+..++
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888999999999999999 57999999999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.66  E-value=1.6e-14  Score=122.97  Aligned_cols=145  Identities=17%  Similarity=0.216  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC
Q 025965           89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD  167 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d  167 (245)
                      +.......+.+.++..+.+++...+.          .++ ....+.++..+|.+|...|++++|+.+|++++++.+..++
T Consensus       150 g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          150 SESYYYMKQTYFSMDYARQAYEIYKE----------HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHT----------CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHh----------CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            33333344677888888888888765          233 6677888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          168 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       168 ~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ......++.++|.++..+|++++|+.++++++++.++.++.+..+.++.++|.+|..+|++++|..+++++++..+
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888788899999999999999999999999999998753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.65  E-value=1.7e-14  Score=122.77  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=105.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAA  175 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~a~  175 (245)
                      +.+.++..+.+++.....          .++....+..+..+|.+|...|++++|+.++++|+++.+..++ ....+.++
T Consensus       116 ~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPF----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            455666666666665544          3556667777888888888888888888888888888887766 45677788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .++|.++...|+|++|+++|++++++.++.++.+..+.++.++|.+|..+|++++|..+++++++..
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~  252 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS  252 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888777777777888888888888888888888888888754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.64  E-value=3.5e-14  Score=109.42  Aligned_cols=138  Identities=14%  Similarity=0.072  Sum_probs=122.0

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-ChHHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKA  174 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-d~~~~~~a  174 (245)
                      .+.+.++..+.+++.....          .++....+.++..+|.++...|++++|..++++++++.+..+ ++.....+
T Consensus        40 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  109 (203)
T 3gw4_A           40 DRFDEARASFQALQQQAQK----------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN  109 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence            3455666667777776654          356677788899999999999999999999999999999988 45578899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.++|.++...|++++|+.++++++++.+..++....+.++.++|.+|...|++++|..+++++++..+
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888888888999999999999999999999999999775

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.64  E-value=1.2e-14  Score=120.52  Aligned_cols=114  Identities=16%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          125 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       125 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      .++....+.++.++|.+|.. |++++|+.+|++|+++.+..++......++.++|.++..+|+|++|+.+|++++++..+
T Consensus       109 ~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          109 NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34444455566666666666 66666666666666666666666556666666666666666666666666666666665


Q ss_pred             cCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          205 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       205 ~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      .++.+....++.++|.++..+|++++|..+|++++
T Consensus       188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            55545555566666666666666666666666665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.63  E-value=1.9e-14  Score=107.48  Aligned_cols=116  Identities=16%  Similarity=0.179  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      ..+..+...|..++..|+|++|+..|++|+++.|+..      .......++.|+|.++..+|+|++|+..|.++|+++.
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            3567788999999999999999999999999999832      1223456999999999999999999999999999865


Q ss_pred             HcC-CcchHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 025965          204 REG-EYSGSTEAY----GAIADCYTELGDLERAARFYDKYISRLESD  245 (245)
Q Consensus       204 ~~~-d~~~~~~a~----~~la~~y~~~g~~~~A~~~y~~al~~~~~~  245 (245)
                      +.+ -+|..+.+|    +++|.++..+|++++|+.+|++++++..+|
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            543 367788889    999999999999999999999999987654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.63  E-value=4e-14  Score=104.35  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=110.3

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      ++....+.++..+|.++...|++++|+.++++++++.+..++......++.++|.++...|++++|+.++++++++.+..
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++.+....++.++|.+|...|++++|..+++++++..+
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999998754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.62  E-value=2.5e-14  Score=117.66  Aligned_cols=136  Identities=17%  Similarity=0.130  Sum_probs=112.4

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAAR  176 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~  176 (245)
                      .+.++..+.+++...+.          ..+....+.++..+|.+|...|++++|+.+|++++++.+..++... ...+++
T Consensus       131 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~  200 (293)
T 2qfc_A          131 YEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHHHHHHHHTTCCC----------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence            34455555555544332          1333345678889999999999999999999999999888766544 348999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A-~~~y~~al~~~~  243 (245)
                      ++|.++..+|+|++|+.++++++++....++....+.+++++|.+|..+|++++| ..+|++++..++
T Consensus       201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887777777899999999999999999999 888999998765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.62  E-value=2.9e-15  Score=111.54  Aligned_cols=119  Identities=12%  Similarity=0.110  Sum_probs=101.8

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+++++...+                ......+.+|.+|+..|+|++|+.+|++++++.|+      ...++.
T Consensus        12 ~~e~ai~~~~~a~~~~p----------------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~   69 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPR----------------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHR   69 (150)
T ss_dssp             HHHHHHHHHHHHSCSHH----------------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             hHHHHHHHHHHhcccCc----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            34455555666655443                34556778999999999999999999999999988      789999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF-YDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~-y~~al~~~~  243 (245)
                      ++|.++...|++++|+..|++++++      +|..+.++.++|.+|...|++++|.+. ++++++..+
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999      888899999999999999999887765 589998754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.61  E-value=7.6e-14  Score=118.72  Aligned_cols=141  Identities=13%  Similarity=0.128  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCccccccCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025965           92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  170 (245)
Q Consensus        92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~  170 (245)
                      .....+...++..+.+++...+..          .+ ....+.++..+|.+|...|++++|+.+|++++++.+..+++..
T Consensus       151 y~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          151 YYHMKQTHVSMYHILQALDIYQNH----------PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTS----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            333346677788888888877651          22 4567888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++.++|.++..+|++++|+.++++++++.+..++.. .+.++.++|.+|..+|++++|..+++++++..+
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988877544 499999999999999999999999999998754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.60  E-value=2.9e-14  Score=117.30  Aligned_cols=153  Identities=12%  Similarity=0.026  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      ....+.+++.......+.+.++..+.+++...+.          ...........+.+|..+...|++++|+.+++++++
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  143 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            3445555566555555677777777777765442          122233445566789999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~-~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      +.+...+......+++++|.+|..+|+|++|+.+|++++++.+..++.+... .+++++|.+|..+|++++|..++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            8877777777788999999999999999999999999999988877655433 799999999999999999999999999


Q ss_pred             HHhh
Q 025965          240 SRLE  243 (245)
Q Consensus       240 ~~~~  243 (245)
                      +...
T Consensus       224 ~~~~  227 (293)
T 2qfc_A          224 EISC  227 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.59  E-value=7.6e-14  Score=114.78  Aligned_cols=151  Identities=13%  Similarity=0.056  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           82 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEE-LLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      ...+.+++.......+.+.++..+.+.+...+.           .+.... +..+..+|..+...+++++|+.+++++++
T Consensus        75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~  143 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-----------CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC-----------ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            345555555555555667777777777664432           222222 33444589999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~-~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      +.....+......++.++|.+|..+|+|++|+.+|+++++..++. ++.+..+.+++++|.+|..+|++++|.+++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             TCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            877777777778899999999999999999999999999999887 6677888899999999999999999999999999


Q ss_pred             HHhh
Q 025965          240 SRLE  243 (245)
Q Consensus       240 ~~~~  243 (245)
                      +...
T Consensus       224 ~~~~  227 (293)
T 3u3w_A          224 EISC  227 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.59  E-value=1.2e-14  Score=133.69  Aligned_cols=130  Identities=15%  Similarity=0.198  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+++.+......++.+.++..|++++...+.                ...++.++|.+|..+|++++|+.+|++|+++.+
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P   74 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP   74 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3444444444445566666666666665543                133555566666666666666666666666665


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      +      ...+++++|.++..+|++++|++.|++++++      +|..+.+++++|.+|..+|++++|+++|+++++.
T Consensus        75 ~------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           75 T------FADAYSNMGNTLKEMQDVQGALQCYTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5      5566666666666666666666666666666      5556666666666666666666666666666654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=3.3e-14  Score=101.91  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+..+...|..++..|++++|+..|++++++.|.      ...++.++|.++..+|++++|+..+++++++      +|.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~   70 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEK------DPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC
Confidence            4557788899999999999999999999999887      6789999999999999999999999999999      788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ...+++++|.+|..+|++++|..+|+++++..
T Consensus        71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           71 FVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            88999999999999999999999999999876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.58  E-value=4.4e-14  Score=104.88  Aligned_cols=103  Identities=21%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      +.....++.+|..++..|++++|+..|++++++.|.      ...++.++|.++...|++++|+..|++++.+      +
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~   85 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------D   85 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------S
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence            345667888999999999999999999999999887      7888999999999999999999999999999      7


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |..+.+++++|.+|..+|++++|..+|+++++...
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            88889999999999999999999999999998754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.58  E-value=3.6e-14  Score=106.64  Aligned_cols=105  Identities=15%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      +....+..+..+|.+++..|++++|+..|++++++.+.      ...++.++|.++...|+|++|+.+|++++++     
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----   74 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVV-----   74 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            34456778889999999999999999999999999887      6889999999999999999999999999999     


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                       +|....+++++|.+|..+|++++|..+|+++++...
T Consensus        75 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           75 -DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence             788899999999999999999999999999998754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.57  E-value=1.4e-13  Score=114.14  Aligned_cols=142  Identities=13%  Similarity=0.051  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025965           91 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  170 (245)
Q Consensus        91 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~  170 (245)
                      ......+.+.++..|.+++...+.          .++....+..+..+|.+|..+|++++|+.+|++|+++++..+++..
T Consensus        45 ~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  114 (307)
T 2ifu_A           45 AFKNAKQLEQAKDAYLQEAEAHAN----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT  114 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            333445556666677777777666          3667778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++.++|.++.. |++++|+.+|++++++.+..++......++.++|.+|..+|++++|+.+|+++++...
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999999999998 9999999999999999999999999999999999999999999999999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=7.8e-14  Score=104.54  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------------PIEEKKAARGLGASLQRQGKYREAIKYHS  196 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d------------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~  196 (245)
                      ...+..+...|..++..|+|++|+..|++++++.+...+            ......++.++|.++..+|+|++|+.+++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            345677888999999999999999999999999543211            22267889999999999999999999999


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       197 ~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +++++      +|..+.+++++|.+|..+|++++|..+|++++....
T Consensus        88 ~al~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  128 (162)
T 3rkv_A           88 EVLKR------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP  128 (162)
T ss_dssp             HHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHhc------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence            99999      888899999999999999999999999999998754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.56  E-value=7.7e-14  Score=102.47  Aligned_cols=103  Identities=22%  Similarity=0.198  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      +.....++.+|..++..|++++|+..|++++...|.      ...++.++|.++...|+|++|+..|++++++      +
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~   82 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALM------D   82 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence            345667788999999999999999999999999887      7888999999999999999999999999999      7


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |..+.+++++|.+|..+|++++|..+|+++++...
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88888999999999999999999999999998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.56  E-value=1.3e-13  Score=113.46  Aligned_cols=148  Identities=14%  Similarity=0.053  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELA  162 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~  162 (245)
                      .+.+.+.......+.+.++..|.+++...+.          .++....+.++..+|.+|... |++++|+.+|++|+++.
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~----------~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~  148 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTH----------RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY  148 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            3444444444445778888889999988765          356666677888999999996 99999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~-~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      +..++......++.++|.++..+|+|++|+.+|++++++....... .....++.++|.+|..+|++++|..+|+++++.
T Consensus       149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9988887778899999999999999999999999999885433322 244568899999999999999999999998764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.54  E-value=9.8e-13  Score=111.44  Aligned_cols=138  Identities=23%  Similarity=0.291  Sum_probs=124.1

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      .+.+.++..+.+++...+.          .++....+..+..+|.+|...|++++|..++++++++.+..++......++
T Consensus       201 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  270 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC  270 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHH
Confidence            3566777777777777655          355666777888999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .++|.++...|++++|+.++++++++..+.++.+....++.++|.+|...|++++|..+|+++++..+
T Consensus       271 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888899999999999999999999999999998754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.53  E-value=5.3e-13  Score=102.72  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-  209 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-  209 (245)
                      ...++..+|.++...|++++|..++++++++.+..++......++.++|.++...|++++|+.+++++++++++.++++ 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            4667888999999999999999999999999999999999999999999999999999999999999999999888555 


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ....++.++|.+|...|++++|..+++++++..+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999999999998654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.53  E-value=1.1e-12  Score=107.66  Aligned_cols=138  Identities=23%  Similarity=0.299  Sum_probs=121.3

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.          .++.......+..+|.++...|++++|..++++++++.+..+++.....++.
T Consensus       198 ~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  267 (338)
T 3ro2_A          198 NFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY  267 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            456666677777766554          2556667778889999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      .+|.++..+|++++|+.++++++++....++.+....++..+|.+|...|++++|..+++++++..++
T Consensus       268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998888888999999999999999999999999999987653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.52  E-value=2.2e-12  Score=109.28  Aligned_cols=136  Identities=18%  Similarity=0.242  Sum_probs=122.1

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  177 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~  177 (245)
                      .+.++..+.+++.....          .++....+..+..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus       163 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            66666677777666554          35666778888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|.++...|++++|+.++++++++....++.+....++.++|.+|...|++++|..+|+++++...
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888899999999999999999999999999998754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=1.5e-13  Score=108.33  Aligned_cols=124  Identities=13%  Similarity=0.046  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025965           90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  169 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~  169 (245)
                      .......+.+.++..|.+++...|.                ...++..+|.++...|++++|+..|++++++.|+     
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-----   71 (217)
T 2pl2_A           13 VQLYALGRYDAALTLFERALKENPQ----------------DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-----   71 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSSS----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence            3333444566677777777776654                2346777888999999999999999999888887     


Q ss_pred             HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          170 EEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~-----------g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                       ...++.++|.++..+           |++++|+..|++++++      +|..+.++.++|.+|...|++++|+..|+++
T Consensus        72 -~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  144 (217)
T 2pl2_A           72 -YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------NPRYAPLHLQRGLVYALLGERDKAEASLKQA  144 (217)
T ss_dssp             -CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence             677788888888888           8888888888888887      7777778888888888888888888888888


Q ss_pred             HHH
Q 025965          239 ISR  241 (245)
Q Consensus       239 l~~  241 (245)
                      ++.
T Consensus       145 l~~  147 (217)
T 2pl2_A          145 LAL  147 (217)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.52  E-value=1.2e-12  Score=111.63  Aligned_cols=137  Identities=22%  Similarity=0.300  Sum_probs=121.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.          ..+.......+..+|.+|...|++++|+.++++++++.+..++......++.
T Consensus       238 ~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  307 (411)
T 4a1s_A          238 DFQAAIEHHQERLRIARE----------FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY  307 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            445666666666666554          2455566778889999999999999999999999999999999988999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|.++..+|++++|+.++++++++..+.++.+....++.++|.+|..+|++++|..+|+++++..+
T Consensus       308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988888899999999999999999999999999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.51  E-value=2.5e-12  Score=109.71  Aligned_cols=136  Identities=17%  Similarity=0.249  Sum_probs=120.6

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  177 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~  177 (245)
                      .+.++..+.+++...+.          ..+.......+..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus       199 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  268 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRD----------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN  268 (411)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            56666666666665543          25556677788899999999999999999999999999998888888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|.++..+|++++|+.++++++++..+.++......++.++|.+|...|++++|..+++++++..+
T Consensus       269 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888888899999999999999999999999999998754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=1.1e-13  Score=108.29  Aligned_cols=147  Identities=13%  Similarity=0.130  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+..++.......+.+.++..|.+++...|........................+|.+|...|++++|+..|++++++.|
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   85 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP   85 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            34444555555556666677777776655431000000000000011111223389999999999999999999999998


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-------------------
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-------------------  224 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~-------------------  224 (245)
                      +      ...++.++|.++...|++++|+..|++++++      +|..+.+++++|.+|..                   
T Consensus        86 ~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~  153 (208)
T 3urz_A           86 N------NVDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP  153 (208)
T ss_dssp             T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred             C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence            8      7889999999999999999999999999998      67666777777766543                   


Q ss_pred             ----------------cCCHHHHHHHHHHHHHHh
Q 025965          225 ----------------LGDLERAARFYDKYISRL  242 (245)
Q Consensus       225 ----------------~g~~~~A~~~y~~al~~~  242 (245)
                                      .|++++|+.+|+++++..
T Consensus       154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                            456788888888887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.50  E-value=3.8e-12  Score=104.45  Aligned_cols=136  Identities=18%  Similarity=0.244  Sum_probs=120.3

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  177 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~  177 (245)
                      .+.++..+.+++.....          .++.......+..+|.++...|++++|..++++++++.+..+++.....++.+
T Consensus       159 ~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  228 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  228 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            55666666666665443          24566677788899999999999999999999999999999998889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|.++...|++++|+.++++++++..+.++.+....++.++|.+|...|++++|..+++++++..+
T Consensus       229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888899999999999999999999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.50  E-value=2e-12  Score=103.85  Aligned_cols=151  Identities=17%  Similarity=0.165  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +...+.......+.+.++..+.+++......        ...+.+....++..+|.+|...|++++|+.++++++++.+.
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           46 LNILALVYRDQNKYKEAAHLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3333334444446677777777777665320        00334556778889999999999999999999999999866


Q ss_pred             C--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          165 V--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       165 ~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .  .+......++.++|.++...|++++|+.++++++++.++.  ++.+....++.++|.+|...|++++|..+++++++
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5  3345578899999999999999999999999999998775  44677889999999999999999999999999998


Q ss_pred             Hhh
Q 025965          241 RLE  243 (245)
Q Consensus       241 ~~~  243 (245)
                      ...
T Consensus       198 ~~~  200 (283)
T 3edt_B          198 RAH  200 (283)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            743

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=5.6e-13  Score=101.51  Aligned_cols=99  Identities=20%  Similarity=0.247  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ......|..+...++++.|...+.+++++.+.      ...++..+|.++..+|++++|+..|++++++      +|..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~------~p~~~  141 (184)
T 3vtx_A           74 EAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFI  141 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHh------cchhh
Confidence            35666788999999999999999999988777      6788999999999999999999999999999      88889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .++.++|.+|..+|++++|.++|+++++.-+
T Consensus       142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999998653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=4.1e-13  Score=104.49  Aligned_cols=105  Identities=16%  Similarity=0.027  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG------  206 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~------  206 (245)
                      ..+..+|.+|...|++++|+.+|++++++.+.      ...++.++|.++..+|++++|+.+|+++++......      
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  111 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  111 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            47888999999999999999999999998876      678899999999999999999999999998754433      


Q ss_pred             ----CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          207 ----EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       207 ----d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                          ..+....+++++|.+|...|++++|..+|+++++...
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A          112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence                4566779999999999999999999999999987643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.49  E-value=6.1e-13  Score=96.19  Aligned_cols=100  Identities=11%  Similarity=0.058  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..+..+|..++..|++++|+..|++++++.+.      ...++.++|.++..+|++++|+.++++++++      .|..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------Cchh
Confidence            457788899999999999999999999999887      6789999999999999999999999999998      7778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..+++++|.+|...|++++|..+|+++++...
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            89999999999999999999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.48  E-value=4.6e-13  Score=105.58  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+...+.......+.+.++..|.+++...+.           .+    ...++.+|.++...|++++|+.+|++++++.|
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   73 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-----------QD----SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY   73 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-----------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCC-----------CC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence            4445555555566778888888888887651           11    13566689999999999999999999999888


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-------EAYGAIADCYTELGDLERAARFYD  236 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~-------~a~~~la~~y~~~g~~~~A~~~y~  236 (245)
                      .      ...++.++|.++..+|++++|+..+++++++      .|...       .++.++|.++...|++++|+++|+
T Consensus        74 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  141 (228)
T 4i17_A           74 N------LANAYIGKSAAYRDMKNNQEYIATLTEGIKA------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK  141 (228)
T ss_dssp             S------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             c------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence            7      8889999999999999999999999999998      45444       679999999999999999999999


Q ss_pred             HHHHH
Q 025965          237 KYISR  241 (245)
Q Consensus       237 ~al~~  241 (245)
                      ++++.
T Consensus       142 ~al~~  146 (228)
T 4i17_A          142 HATDV  146 (228)
T ss_dssp             HHTTS
T ss_pred             HHHhc
Confidence            99875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.48  E-value=2.2e-13  Score=97.52  Aligned_cols=98  Identities=17%  Similarity=0.137  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ..+..|..+...|++++|+..++++++..|+      ...++..+|.++...|++++|+..|++++++      +|....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~   86 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIA   86 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Confidence            3567899999999999999999999999988      7889999999999999999999999999999      888889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++.++|.+|...|++++|...|+++++...
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           87 VHAALAVSHTNEHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999987643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.47  E-value=4e-13  Score=105.83  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHH
Q 025965           94 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-----------QDLEKAFTEFKAALELA  162 (245)
Q Consensus        94 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~l~  162 (245)
                      ...+.+.++..+.+++...|.                ...++..+|.++...           |++++|+..+++++++.
T Consensus        51 ~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  114 (217)
T 2pl2_A           51 KLGLVNPALENGKTLVARTPR----------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN  114 (217)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence            334566777777777776654                234667788999988           99999999999999988


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      |+      ...++.++|.++..+|++++|+..|++++++      + ..+.++.++|.+|...|++++|...|+++++..
T Consensus       115 P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  181 (217)
T 2pl2_A          115 PR------YAPLHLQRGLVYALLGERDKAEASLKQALAL------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA  181 (217)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             cc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            87      6788889999999999999999999999888      4 557788899999999999999999999998764


Q ss_pred             h
Q 025965          243 E  243 (245)
Q Consensus       243 ~  243 (245)
                      .
T Consensus       182 P  182 (217)
T 2pl2_A          182 P  182 (217)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.47  E-value=3e-13  Score=124.54  Aligned_cols=131  Identities=17%  Similarity=0.211  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +.+.+..+....+.+.++..|++++...+.                ...++.++|.++..+|++++|++.|++|+++.++
T Consensus        46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~  109 (723)
T 4gyw_A           46 HSNLASVLQQQGKLQEALMHYKEAIRISPT----------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA  109 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            344444445555778888889999887664                2457888999999999999999999999999988


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                            ...+++++|.++..+|++++|+..|++++++      +|....++.++|.+|..+|++++|.+.|+++++...
T Consensus       110 ------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          110 ------FADAHSNLASIHKDSGNIPEAIASYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence                  7899999999999999999999999999999      888899999999999999999999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.47  E-value=1.8e-12  Score=104.15  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=104.5

Q ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      +.+....++..+|.+|...|++++|+.++++++++....  ++......++.++|.++...|++++|+.++++++++.++
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            335567788899999999999999999999999998776  666778899999999999999999999999999999887


Q ss_pred             c--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          205 E--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       205 ~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .  .+++....++.++|.+|...|++++|..+++++++..
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            6  4457889999999999999999999999999999874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.46  E-value=3.3e-12  Score=104.25  Aligned_cols=138  Identities=14%  Similarity=0.155  Sum_probs=114.4

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKA  174 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a  174 (245)
                      +.+.++..+.+++......        ...+......++..+|.+|...|++++|+.++++++++.+..  .+......+
T Consensus        42 ~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  113 (311)
T 3nf1_A           42 RYEVAVPLCKQALEDLEKT--------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT  113 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4445555555555543320        001345567788889999999999999999999999998776  666778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +.++|.++...|++++|+.++++++++.++.  ++.+....++.++|.+|...|++++|..+++++++..
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998876  6678889999999999999999999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.45  E-value=9.5e-13  Score=94.93  Aligned_cols=115  Identities=12%  Similarity=0.136  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965           80 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  159 (245)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  159 (245)
                      ...+...+++.......+.+.++..|.+++...|.                ....+.++|.+|..+|++++|+..|++++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------------NAILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            44456777788888888999999999999987764                24477889999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 025965          160 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  222 (245)
Q Consensus       160 ~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y  222 (245)
                      ++.++      ...++.++|.++..+|++++|+..|++++++      +|....++.+++.++
T Consensus        75 ~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           75 RLDSK------FIKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHC
T ss_pred             Hhhhh------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHHHHhc
Confidence            99888      7889999999999999999999999999999      888899999998763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=7.9e-12  Score=101.98  Aligned_cols=138  Identities=20%  Similarity=0.259  Sum_probs=115.4

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKA  174 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a  174 (245)
                      +.+.++..+.+++......        ...+.......+..+|.+|...|++++|+.++++++++....  ++......+
T Consensus        84 ~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (311)
T 3nf1_A           84 KYKDAANLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ  155 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            4566666666666654320        013345567788899999999999999999999999998765  566668899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +.++|.++...|++++|+.++++++++.++.  ++.+....++.++|.+|...|++++|..+++++++..
T Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998876  5577888999999999999999999999999999864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.44  E-value=2.6e-12  Score=100.46  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG----------------LGASLQRQGKYREAIKYHS  196 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~----------------lg~~~~~~g~~~~Ai~~~~  196 (245)
                      ...+..|..+...|++++|+..|++++++.|+      ...++..                +|.++...|++++|+..|+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            35677899999999999999999999999988      7777888                9999999999999999999


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       197 ~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +++++      +|....++.++|.+|...|++++|..+|+++++.-+
T Consensus        79 ~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P  119 (208)
T 3urz_A           79 ELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA  119 (208)
T ss_dssp             HHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            99999      888899999999999999999999999999998654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.44  E-value=3.7e-12  Score=90.39  Aligned_cols=106  Identities=18%  Similarity=0.239  Sum_probs=95.2

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      ...+.....+..+|..+...|++++|+..++++++..+.      ...++..+|.++...|++++|+.+++++++.    
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   75 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICI----   75 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence            345567778889999999999999999999999998776      5778999999999999999999999999998    


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                        .|....++.++|.+|...|++++|..+|+++++...
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence              666788999999999999999999999999998754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=3.2e-12  Score=97.25  Aligned_cols=129  Identities=19%  Similarity=0.202  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025965           87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  166 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  166 (245)
                      +.+......++.+.++..|.+++...|.                ...++..+|.+|...|++++|+..+++++...++  
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--   71 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKADPN----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--   71 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--
Confidence            3344445556788888889999887664                2447778899999999999999999999988777  


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                          ...++..+|.++...+++++|+..+.+++++      .|....++..+|.+|..+|++++|+++|+++++.-+
T Consensus        72 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p  138 (184)
T 3vtx_A           72 ----SAEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP  138 (184)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence                6788899999999999999999999999998      788888999999999999999999999999998653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.43  E-value=1.4e-13  Score=102.22  Aligned_cols=94  Identities=12%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  217 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~  217 (245)
                      +|.++...|++++|+..+++++...++      ...+++++|.+|...|+|++|+++|++++++      +|..+.++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------~p~~~~a~~~   70 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ------KSIKGFYFAKLYYEAKEYDLAKKYICTYINV------QERDPKAHRF   70 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence            588888899999999999999988887      8888999999999999999999999999999      8889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          218 IADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       218 la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|.+|...|++++|..+|+++++.-.
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~~p   96 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVELNP   96 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCC
Confidence            99999999999999999999998754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.43  E-value=1.9e-12  Score=92.60  Aligned_cols=104  Identities=14%  Similarity=0.067  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ..+..|..++..|++++|+..|+++++..|+   ......++..+|.++...|+|++|+.+|+++++.   ..+.+..+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHH
Confidence            3567899999999999999999999987765   2223478899999999999999999999999988   122223388


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +++++|.+|..+|++++|..+|+++++...
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=2.5e-12  Score=89.70  Aligned_cols=100  Identities=16%  Similarity=0.248  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..+...|..+...|++++|+..++++++..+.      ...++.++|.++...|++++|+.+++++++.      .|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~   71 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPDW   71 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------Cccc
Confidence            456778899999999999999999999998776      5778999999999999999999999999998      6777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.+|...|++++|..+++++++...
T Consensus        72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            88999999999999999999999999987643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.42  E-value=4.4e-12  Score=94.27  Aligned_cols=103  Identities=16%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ...+..+..+|..++..|++++|+..|+++++..+.      ...++.++|.++...|++++|+.+++++++.      .
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~   77 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------D   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence            345667888899999999999999999999998776      5778899999999999999999999999988      6


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |....++.++|.+|...|++++|..+|+++++...
T Consensus        78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  112 (166)
T 1a17_A           78 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP  112 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            77788999999999999999999999999988654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.42  E-value=1.9e-12  Score=102.02  Aligned_cols=131  Identities=7%  Similarity=0.035  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh-HH
Q 025965           92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP-IE  170 (245)
Q Consensus        92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~-~~  170 (245)
                      .....+.+.++..+.+++...|.                ...++..+|.+|..+|++++|+..+++++++.|+.... ..
T Consensus        52 ~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  115 (228)
T 4i17_A           52 ADNIKKYKEAADYFDIAIKKNYN----------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL  115 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCS----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHhhcHHHHHHHHHHHHHhCcc----------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            33334566777777777765543                35577788999999999999999999999988762211 11


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHcCCH--------------------
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDL--------------------  228 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~--~~~a~~~la~~y~~~g~~--------------------  228 (245)
                      ...++.++|.++...|++++|+..|++++++      +|.  .+.++.++|.+|...|+.                    
T Consensus       116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  189 (228)
T 4i17_A          116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDV------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEK  189 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHhccHHHHHHHHHHHHhc------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence            3467999999999999999999999999988      888  889999999999999998                    


Q ss_pred             -------HHHHHHHHHHHHHhhc
Q 025965          229 -------ERAARFYDKYISRLES  244 (245)
Q Consensus       229 -------~~A~~~y~~al~~~~~  244 (245)
                             ++|..+|+++++..++
T Consensus       190 ~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          190 AKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCC
Confidence                   8999999999887543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.42  E-value=4.1e-12  Score=90.25  Aligned_cols=106  Identities=18%  Similarity=0.363  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcc
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYS  209 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~-~d~~  209 (245)
                      .+..++.+|..+...|++++|+.+++++++..+.      ...++.++|.++...|++++|+.+++++++..... .+.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            3456778899999999999999999999998776      57789999999999999999999999999996653 2333


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ....+++++|.+|...|++++|..+|+++++..
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            347899999999999999999999999999864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.42  E-value=1.1e-12  Score=110.30  Aligned_cols=110  Identities=13%  Similarity=0.159  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      .+..+..+..+|..++..|++++|+..|++++++.+...+         ......++.++|.++..+|+|++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556778889999999999999999999999999887431         1223688999999999999999999999999


Q ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +++      +|....+++++|.+|..+|++++|..+|+++++...
T Consensus       223 l~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  261 (336)
T 1p5q_A          223 LEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  261 (336)
T ss_dssp             HHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            999      788899999999999999999999999999998653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=4.4e-12  Score=101.90  Aligned_cols=122  Identities=14%  Similarity=0.023  Sum_probs=103.3

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  177 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~  177 (245)
                      .+.++..+.+++...+            .+++.....+..+|.++...|++++|+..|++++++.+.      ...++.+
T Consensus        21 ~~~A~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~   82 (275)
T 1xnf_A           21 QEVILARMEQILASRA------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNY   82 (275)
T ss_dssp             HHHHHHHHHHHHTSSC------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHH
T ss_pred             HHHHHHHHHHHHhccc------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHH
Confidence            4445555666665432            234556778889999999999999999999999998776      6778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       178 lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|.++...|++++|+.+|++++++      .|....++.++|.+|...|++++|..+|+++++...
T Consensus        83 la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  142 (275)
T 1xnf_A           83 LGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  142 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhc------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            999999999999999999999998      677788999999999999999999999999998653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=93.59  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      +.....+..+|..+...|++++|+..++++++..+.      ...++.++|.++...|++++|+.+++++++.      .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~   80 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQL------E   80 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH------C
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------C
Confidence            335667888899999999999999999999988766      5788999999999999999999999999998      6


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +....++.++|.+|...|++++|..+++++++...
T Consensus        81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            77788999999999999999999999999998643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.40  E-value=4e-12  Score=98.25  Aligned_cols=110  Identities=21%  Similarity=0.240  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------IEEKKAARGLGASLQRQGKYREAIKYHSM  197 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~----------~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~  197 (245)
                      ....+..+...|..++..|+|++|+..|++++++.+...+.          .....++.++|.++...|+|++|+.++++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            44567778889999999999999999999999987664321          11247899999999999999999999999


Q ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       198 al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++++      .|....+++++|.+|..+|++++|..+|+++++...
T Consensus       114 al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  153 (198)
T 2fbn_A          114 VLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  153 (198)
T ss_dssp             HHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHh------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            9998      777889999999999999999999999999998753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2e-11  Score=96.93  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--------------------CCChHHHHHHHHHHHHHHHHcCCHH
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN--------------------VKDPIEEKKAARGLGASLQRQGKYR  189 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--------------------~~d~~~~~~a~~~lg~~~~~~g~~~  189 (245)
                      .....+..+|.++...|++++|+.++++++++.+.                    +........++..+|.++...|+++
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence            33556666666666666666666666666663221                    1134444555666666666666666


Q ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          190 EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       190 ~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +|+..++++++.      .|....++.++|.+|...|++++|..+++++++..
T Consensus       157 ~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          157 NAVKAYTEMIKR------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            666666666665      44455566666666666666666666666666543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=8.5e-13  Score=113.00  Aligned_cols=96  Identities=8%  Similarity=0.028  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          134 SRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ++.++|.++..+|+ +++|+..|++++++.++      ...+++++|.++..+|++++|+..|++++++      +|...
T Consensus       133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l------dP~~~  200 (382)
T 2h6f_A          133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNY  200 (382)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CccCH
Confidence            45555666666664 66666666666666555      5555666666666666666666666666665      55555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+++++|.++..+|++++|+.+|+++++.
T Consensus       201 ~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          201 HAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            66666666666666666666666666554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.40  E-value=1e-12  Score=93.08  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=77.1

Q ss_pred             HCCCHHHHHHHHHHHHHH---HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 025965          144 RNQDLEKAFTEFKAALEL---AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  220 (245)
Q Consensus       144 ~~g~~~~A~~~~~~al~l---~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~  220 (245)
                      .+|++++|+.+|++++++   .+.      ...++.++|.++..+|+|++|+.+|++++++      .|..+.++.++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHHHH
Confidence            358999999999999998   566      8899999999999999999999999999999      7888899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHhh
Q 025965          221 CYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       221 ~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|..+|++++|..+++++++...
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p   92 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETS   92 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999998754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.39  E-value=8e-12  Score=105.02  Aligned_cols=150  Identities=20%  Similarity=0.215  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      ....+...+.......+.+.++..|.+++...+....... ..........+.+++++|.+|..+|++++|+.+|+++++
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3345566666666667889999999999998775211110 000111233467888999999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 025965          161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYI  239 (245)
Q Consensus       161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A-~~~y~~al  239 (245)
                      +.+.      ...+++++|.++..+|++++|+.+|++++++      .|....++.++|.++..+|++++| ...|++++
T Consensus       225 ~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          225 LDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887      7889999999999999999999999999999      788889999999999999999999 66888887


Q ss_pred             HHhh
Q 025965          240 SRLE  243 (245)
Q Consensus       240 ~~~~  243 (245)
                      +.+.
T Consensus       293 ~~~~  296 (336)
T 1p5q_A          293 ERLA  296 (336)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.39  E-value=7.1e-11  Score=99.68  Aligned_cols=136  Identities=11%  Similarity=-0.033  Sum_probs=104.9

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.           ++....+.++..+|.++...|++++|...+++++++.+..++......++.
T Consensus        29 ~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           29 NPDEAERLAKLALEELPP-----------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             CHHHHHHHHHHHHHTCCT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCC-----------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344445555555554432           333445566777888888888888888888888888888888877788888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~--~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++|.++..+|++++|+.++++++++.++.++.  +....++.++|.+|...|++++|..+++++++...
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888876654  56777888888888888888888888888887653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.37  E-value=2.9e-12  Score=97.08  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHcCCcc
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS-LQRQGKY--REAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~-~~~~g~~--~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      ..+..+|.+|...|++++|+.+|++++++.+.      ...++.++|.+ +...|++  ++|+..++++++.      .|
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------~p  112 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALAL------DS  112 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------CC
Confidence            46778899999999999999999999999887      57788999999 8899999  9999999999998      77


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ....++.++|.+|...|++++|..+|+++++...
T Consensus       113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A          113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence            7788999999999999999999999999998654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.37  E-value=3e-12  Score=112.11  Aligned_cols=109  Identities=12%  Similarity=0.104  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ....+..+..+|..++..|+|++|+..|++|+++.+...+         ......++.++|.++..+|+|++|+.+|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3456778889999999999999999999999999887431         2223688999999999999999999999999


Q ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +++      +|....+++++|.+|..+|++++|..+|+++++..
T Consensus       344 l~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          344 LGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             Hhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            999      78889999999999999999999999999998764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=5.8e-12  Score=91.76  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+..++..|..+...|++++|+..|+++++..++   ......++.++|.++...|++++|+.+++++++.      .|.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------DGG   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------Ccc
Confidence            4567788899999999999999999999986543   3334788999999999999999999999999998      666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...+++++|.+|...|++++|..+|+++++...
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            688999999999999999999999999998654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.36  E-value=1.4e-11  Score=86.65  Aligned_cols=100  Identities=27%  Similarity=0.466  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+..+|..+...|++++|+..++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCcc
Confidence            456778899999999999999999999988665      5678899999999999999999999999987      5666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.+|...|++++|..+++++++...
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            78899999999999999999999999988643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.36  E-value=9.2e-12  Score=100.24  Aligned_cols=142  Identities=15%  Similarity=0.125  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      +.+...+.......+.+.++..|.+.+...|.           .+  ....+++.+|.+|+..|++++|+..|+++++..
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-----------HE--WAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-----------ST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------Cc--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            34555556666666788888888888887664           22  124577888999999999999999999999987


Q ss_pred             HhCCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCcchHHHHH--------------HHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQR--------QGKYREAIKYHSMVLQISEREGEYSGSTEAY--------------GAIAD  220 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~--------~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~--------------~~la~  220 (245)
                      |+..   ....+++.+|.++..        +|++++|+..|+++++...   +.+....+.              +++|.
T Consensus        83 p~~~---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~~~~~~~~~~~~~~~la~  156 (261)
T 3qky_A           83 QIDP---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP---NHELVDDATQKIRELRAKLARKQYEAAR  156 (261)
T ss_dssp             TTCT---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT---TCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc---CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6432   256789999999999        9999999999999998832   233333444              88999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHhh
Q 025965          221 CYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       221 ~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|...|++++|+..|+++++...
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~p  179 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAYP  179 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHccCHHHHHHHHHHHHHHCC
Confidence            99999999999999999998754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.36  E-value=3.2e-11  Score=90.66  Aligned_cols=99  Identities=21%  Similarity=0.228  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..+..+|.++...|++++|..+++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+...
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~  144 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALDNLGRFDEAIDSFKIALGL------RPNEG  144 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------Cccch
Confidence            35667788888888899988888888887665      5667888888999999999999999998887      56667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .++..+|.+|...|++++|..+++++++...
T Consensus       145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          145 KVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            7888899999999999999999998887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.9e-11  Score=97.07  Aligned_cols=101  Identities=16%  Similarity=0.171  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      .....+..+|.++...|++++|+..++++++..+.      ...++.++|.++...|++++|+.+++++++.      .|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~  204 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEK------DP  204 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CH
Confidence            35567788999999999999999999999998876      5788999999999999999999999999998      77


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ....++..+|.+|...|++++|..+|+++++..
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            778899999999999999999999999999876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.36  E-value=1.8e-11  Score=90.88  Aligned_cols=132  Identities=18%  Similarity=0.162  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+...+.......+.+.++..|.+++...+.                ....+..+|.++...|++++|+..+++++++.+
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            4444444455555667777778877776543                144677889999999999999999999999887


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY--GAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~--~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .      ...++.++|.++..+|++++|+.++++++++      .|....++  ..++..+...|++++|...+.++...
T Consensus        79 ~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           79 K------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            6      6788999999999999999999999999988      55555555  44555588999999999999998876


Q ss_pred             hh
Q 025965          242 LE  243 (245)
Q Consensus       242 ~~  243 (245)
                      ++
T Consensus       147 ~~  148 (166)
T 1a17_A          147 VD  148 (166)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.35  E-value=4.6e-11  Score=105.26  Aligned_cols=143  Identities=10%  Similarity=-0.063  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChH
Q 025965           92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPI  169 (245)
Q Consensus        92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~  169 (245)
                      ...+++.+.++..+.+++......        .-.+.+..+.++.++|.+|..+|+|++|..++++++++....  .++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~--------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPV--------FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTT--------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            333345566666666666654331        124566788899999999999999999999999999998864  4666


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+..+++||.+|..+|+|++|+..|++|+++.+..  .+.|.......+++.++.+++.+++|...|.++.+.+
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999874  5678899999999999999999999999999998755

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=2.5e-11  Score=91.26  Aligned_cols=127  Identities=13%  Similarity=0.096  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025965           89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  168 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~  168 (245)
                      +.......+.+.++..+.+++...+.                ....+..+|.++...|++++|..+++++++..+.    
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----   74 (186)
T 3as5_A           15 GISHAKAGRYSQAVMLLEQVYDADAF----------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD----   74 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcc----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Confidence            33344445667777888888876543                1346778899999999999999999999998766    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                        ...++..+|.++...|++++|+.+++++++.      .|....++..+|.+|...|++++|..+++++++...
T Consensus        75 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           75 --NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             --CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence              5778899999999999999999999999988      666778999999999999999999999999987643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=2.8e-11  Score=85.95  Aligned_cols=98  Identities=28%  Similarity=0.475  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .+..+|.++...|++++|...++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+....
T Consensus        37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~  104 (136)
T 2fo7_A           37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAE  104 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChH
Confidence            5667899999999999999999999987665      5667889999999999999999999999987      566678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++..+|.+|...|++++|..+++++++...
T Consensus       105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A          105 AWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            899999999999999999999999987654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.34  E-value=1.8e-12  Score=89.71  Aligned_cols=98  Identities=17%  Similarity=0.184  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch--H
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--S  211 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~--~  211 (245)
                      .+..+|.++...|++++|+..+++++++.+.      ...++.++|.++...|++++|+.+++++++.      .+.  .
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~   75 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINV------IEDEYN   75 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------SCCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------Ccccch
Confidence            4556799999999999999999999998766      5678899999999999999999999999988      566  7


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTEL-GDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~-g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.+|... |++++|.++++++++...
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            88999999999999 999999999999987643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=1.9e-11  Score=104.17  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----------d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ...+..+..+|..++..|++++|+..|++++++.+...          .......++.++|.++..+|+|++|+.+++++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34566778899999999999999999999999655421          23336788999999999999999999999999


Q ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +++      +|..+.+++++|.+|..+|++++|..+|+++++...
T Consensus       300 l~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          300 LEI------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             HTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHh------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            998      788899999999999999999999999999998754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.31  E-value=1.1e-11  Score=101.64  Aligned_cols=100  Identities=11%  Similarity=0.058  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..+...|..++..|++++|+..|+++++..+.      ...++.++|.++..+|++++|+..+++++++      +|..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence            346778899999999999999999999999887      6788999999999999999999999999988      7888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..+++++|.+|..+|++++|..+|+++++...
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            89999999999999999999999999998754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.31  E-value=7.8e-11  Score=103.78  Aligned_cols=110  Identities=13%  Similarity=-0.012  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcc
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYS  209 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~  209 (245)
                      ..+..+..+..+|+|++|...+++++++....  .+......+++++|.+|..+|+|++|+.++++++++.++.  .+.|
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            34455667888999999999999999998764  3566688999999999999999999999999999999874  5678


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..+..++|+|.+|..+|++++|..+|++|+++.+
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.30  E-value=2.3e-11  Score=95.83  Aligned_cols=119  Identities=16%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      .+.+.++..+.+++...+.                ....+..+|.++...|++++|+..++++++..+.      ...++
T Consensus        71 ~~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~  128 (243)
T 2q7f_A           71 NELERALAFYDKALELDSS----------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------NGDLF  128 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------SHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCc----------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHH
Confidence            3556666666666655432                1345667788888888888888888888887665      45677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..+|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|..+++++++..
T Consensus       129 ~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          129 YMLGTVLVKLEQPKLALPYLQRAVEL------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            88888888888888888888888877      56666788888888888888888888888887764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.30  E-value=1.3e-10  Score=98.00  Aligned_cols=136  Identities=13%  Similarity=0.063  Sum_probs=113.7

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh--HHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKK  173 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~--~~~~~  173 (245)
                      .+.+.+...+.+++...+.          .++....+.+...+|.++...|++++|..++++++++.+..++.  .....
T Consensus        67 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  136 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQ----------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF  136 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence            3455566667777776654          24555667778899999999999999999999999999987765  55777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++.++|.++...|++++|..++++++++..+.++.. ...++.++|.++...|++++|..++++++...
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999977655433 56789999999999999999999999998764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.30  E-value=3e-11  Score=101.49  Aligned_cols=121  Identities=18%  Similarity=0.149  Sum_probs=103.0

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.           .   .....+..+|.+|...|++++|+..|++++++.+.      ...++.
T Consensus       192 ~~~~A~~~~~~al~~~p~-----------~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~  251 (365)
T 4eqf_A          192 VLEGVKELYLEAAHQNGD-----------M---IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWN  251 (365)
T ss_dssp             HHHHHHHHHHHHHHHSCS-----------S---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcC-----------c---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            455566666666665442           0   01336778899999999999999999999998877      677899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++|.++...|++++|+.+|++++++      .|....++.++|.+|..+|++++|..+|+++++..+
T Consensus       252 ~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  312 (365)
T 4eqf_A          252 RLGATLANGDRSEEAVEAYTRALEI------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999998      777789999999999999999999999999998764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.30  E-value=5.7e-11  Score=92.23  Aligned_cols=121  Identities=21%  Similarity=0.204  Sum_probs=95.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      +.+.++..+.+++...+.                ....+..+|.++... |++++|+..++++++ .   +.......++
T Consensus        57 ~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~---~~~~~~~~~~  116 (225)
T 2vq2_A           57 VNDKAQESFRQALSIKPD----------------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-D---PTYPTPYIAN  116 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S---TTCSCHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C---cCCcchHHHH
Confidence            455666666666654432                133667789999999 999999999999887 1   1222256788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .++|.++...|++++|+.+++++++.      .|....++..+|.+|...|++++|..+++++++...
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAA------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999888      666678899999999999999999999999987654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.29  E-value=6.2e-11  Score=99.29  Aligned_cols=124  Identities=18%  Similarity=0.162  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH
Q 025965           94 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  173 (245)
Q Consensus        94 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~  173 (245)
                      ...+.+.++..+.+++...+.           .+   ....+..+|.++...|++++|+..+++++++.+.      ...
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~-----------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~  252 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPT-----------SI---DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYL  252 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTT-----------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred             hcccHHHHHHHHHHHHHhCcC-----------cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHH
Confidence            344666777777777766543           11   2446778899999999999999999999998776      577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++.++|.++...|++++|+.+|++++++      .|....++.++|.+|...|++++|..+|+++++...
T Consensus       253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          253 LWNKLGATLANGNQSEEAVAAYRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            8999999999999999999999999998      777788999999999999999999999999998764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=2.3e-11  Score=106.84  Aligned_cols=123  Identities=7%  Similarity=-0.051  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH
Q 025965           92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---------QDLEKAFTEFKAALELA  162 (245)
Q Consensus        92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~l~  162 (245)
                      +....+.+.++..|.+++...+              .   ...+..+|.++...         |++++|+..|++++++.
T Consensus       147 ~~~~g~~~~A~~~~~~al~~~p--------------~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  209 (474)
T 4abn_A          147 YWKKGDVTSAHTCFSGALTHCK--------------N---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD  209 (474)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTCC--------------C---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHhhCC--------------C---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence            3333456666667777666443              2   25777889999999         99999999999999998


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHHcCCHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERA  231 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~--------g~~~~Ai~~~~~al~~~~~~~d~~---~~~~a~~~la~~y~~~g~~~~A  231 (245)
                      ++      ...++.++|.++...        |++++|+.+|++++++      +|   ..+.+++++|.+|...|++++|
T Consensus       210 p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~A  277 (474)
T 4abn_A          210 VL------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGEA  277 (474)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CC------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            87      788999999999999        9999999999999999      77   8899999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 025965          232 ARFYDKYISRLE  243 (245)
Q Consensus       232 ~~~y~~al~~~~  243 (245)
                      ..+|+++++...
T Consensus       278 ~~~~~~al~l~p  289 (474)
T 4abn_A          278 LEGFSQAAALDP  289 (474)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCC
Confidence            999999998653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.28  E-value=1.3e-10  Score=100.94  Aligned_cols=105  Identities=10%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEA  214 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a  214 (245)
                      +......|+|++|...+++++++....  .+.......++++|.+|..+|+|++|+.++++++++.++.  .+.|..+..
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            333445689999999999999998764  3566788999999999999999999999999999999874  568899999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++|+|.+|..+|++++|..+|++|+++.+
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=7.5e-11  Score=84.13  Aligned_cols=121  Identities=10%  Similarity=0.048  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      +.+.+.+.......+.+.++..|.+++...+.                ....+..+|.++...|++++|+..+++++++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   68 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD   68 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34555566666666788888889888887664                13577889999999999999999999999998


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                      |+      ...++.++|.++..+|++++|+..|++++++..+.++.|....+...++.+...+
T Consensus        69 p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           69 PN------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             CC------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            87      6889999999999999999999999999999655554588888888888776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.27  E-value=4.4e-11  Score=94.23  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=100.8

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+.+++++++..+.      ...++.
T Consensus       106 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  163 (243)
T 2q7f_A          106 MYKEAKDMFEKALRAGME----------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARF  163 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCC----------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHH
Confidence            455666666666665443                1235677899999999999999999999998776      567889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|..+|+++++...
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALSQFAAVTEQ------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            9999999999999999999999988      666778999999999999999999999999998754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.27  E-value=2.2e-11  Score=94.00  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025965           78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  157 (245)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  157 (245)
                      +......+...+.......+.+.++..|.+++...+.....................+.++|.+|...|++++|+.++++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            33444566666666666678888889999998876642100000000000111246778899999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHH
Q 025965          158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYD  236 (245)
Q Consensus       158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~-~~y~  236 (245)
                      ++++.+.      ...++.++|.++..+|++++|+.+|++++++      .|....++.+++.++..+++.+++. ..|.
T Consensus       114 al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  181 (198)
T 2fbn_A          114 VLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEARKKDKLTFG  181 (198)
T ss_dssp             HHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999876      6789999999999999999999999999999      7778889999999999999988887 4444


Q ss_pred             HHH
Q 025965          237 KYI  239 (245)
Q Consensus       237 ~al  239 (245)
                      +.+
T Consensus       182 ~~f  184 (198)
T 2fbn_A          182 GMF  184 (198)
T ss_dssp             ---
T ss_pred             HHh
Confidence            443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.26  E-value=8.4e-11  Score=98.77  Aligned_cols=105  Identities=13%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH----------------------------------------H
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE----------------------------------------E  171 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~----------------------------------------~  171 (245)
                      ..++..+|.+|...|++++|+..+++++++.+...+...                                        .
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  212 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID  212 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence            346677788888888888888888888888776444443                                        2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ..++.++|.++...|++++|+.+|+++++.      .|..+.++.++|.+|...|++++|..+|+++++..
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            345677777777777777777777777777      66667777777777777777777777777777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.26  E-value=8.2e-11  Score=105.34  Aligned_cols=124  Identities=14%  Similarity=0.033  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHH
Q 025965           92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE  171 (245)
Q Consensus        92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~  171 (245)
                      .....+.+.++..|++++...+.                ....+..+|.+|..+|++++|+.+|++++++.++      .
T Consensus        33 ~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~   90 (568)
T 2vsy_A           33 ELGMGDTTAGEMAVQRGLALHPG----------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------H   90 (568)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------C
Confidence            33344667777778888876553                2446778899999999999999999999999887      6


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhh
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDLERAARFYDKYISRLE  243 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~---g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.++...|++++|+.+|++++++      .|....++.++|.++..+   |++++|.+.|+++++...
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence            788999999999999999999999999998      777788999999999999   999999999999998653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.26  E-value=6.9e-12  Score=100.85  Aligned_cols=97  Identities=13%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ++..+|.++...|++++|+.+|++++++.+.      ...++.++|.++...|++++|+.+++++++.      .|....
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~  143 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTDPK  143 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCCHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCcHH
Confidence            4455566666666666666666666655554      3445556666666666666666666665554      444455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++.++|......+++++|..+|+++++..
T Consensus       144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A          144 VFYELGQAYYYNKEYVKADSSFVKVLELK  172 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55666622223346666666666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.26  E-value=5.1e-11  Score=92.49  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ++..++..|..+...|++++|+..|++++.   .      ...++.++|.++...|++++|+.+|++++++      .|.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~   69 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD---P------HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKH   69 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---C------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC---C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Ccc
Confidence            455678899999999999999999999851   1      3568999999999999999999999999998      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...+++++|.+|...|++++|..+|+++++...
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            889999999999999999999999999998543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.25  E-value=2.7e-11  Score=108.42  Aligned_cols=100  Identities=17%  Similarity=0.086  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+..+|.++...|++++|+.+|++++++.++      ...++.++|.++..+|++++|+.+|++++++      .|..
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~   90 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDA------APEH   90 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCC
Confidence            447778899999999999999999999998877      6888999999999999999999999999998      7778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.+|...|++++|.++|+++++...
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  122 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP  122 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            89999999999999999999999999998653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.25  E-value=9.2e-11  Score=93.21  Aligned_cols=118  Identities=16%  Similarity=0.169  Sum_probs=91.2

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHhCCChHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE--LAQNVKDPIEEKKA  174 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~d~~~~~~a  174 (245)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+.+++++++  ..+.      ...+
T Consensus        86 ~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~  143 (252)
T 2ho1_A           86 EPKLADEEYRKALASDSR----------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE------RSRV  143 (252)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT------HHHH
T ss_pred             CHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc------cHHH
Confidence            455666666666654432                133566778889999999999999998877  3232      6677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +..+|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|..+++++++..
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  205 (252)
T 2ho1_A          144 FENLGLVSLQMKKPAQAKEYFEKSLRL------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG  205 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            888999999999999999999998887      56667788889999999999999999998887653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.24  E-value=6.3e-11  Score=97.41  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~---~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+..+|.++...|++++|+.+++++++..+..++.   .....++.++|.++...|++++|+.++++++++      .|.
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~  268 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL------IPQ  268 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------Ccc
Confidence            34444555555555555555555555554443333   222345555555555555555555555555554      344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ...++.++|.+|...|++++|..+|+++++
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            444555555555555555555555555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.24  E-value=3.5e-11  Score=98.95  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      ....+.......+.+.++..+.+++...+.           .     ...+..+|.++...|++++|+..++++++..+.
T Consensus       128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  191 (330)
T 3hym_B          128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKG-----------C-----HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE  191 (330)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-----------C-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhccc-----------c-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            344444444555788888899999887664           1     224566899999999999999999999998887


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY---SGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~---~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                            ...++..+|.++...|++++|+.+++++++.....++.   +....++.++|.+|...|++++|..+|+++++.
T Consensus       192 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          192 ------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence                  67889999999999999999999999999999887654   445679999999999999999999999999986


Q ss_pred             hh
Q 025965          242 LE  243 (245)
Q Consensus       242 ~~  243 (245)
                      ..
T Consensus       266 ~~  267 (330)
T 3hym_B          266 IP  267 (330)
T ss_dssp             ST
T ss_pred             Cc
Confidence            54

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=7.5e-12  Score=114.77  Aligned_cols=122  Identities=16%  Similarity=0.061  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH
Q 025965           91 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  170 (245)
Q Consensus        91 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~  170 (245)
                      ......+.+.++..|.+++...+.                ...+++.+|.++...|++++|+..|++++++.++      
T Consensus       442 ~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------  499 (681)
T 2pzi_A          442 ALLDLGDVAKATRKLDDLAERVGW----------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG------  499 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------
T ss_pred             HHHhcCCHHHHHHHHHHHhccCcc----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence            333344567777777777776554                2447788899999999999999999999999988      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ...++.++|.++..+|++++ +.+|++++++      +|....+++++|.+|..+|++++|..+|+++++.
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  563 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDE-HKFYQTVWST------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT  563 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred             ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence            68889999999999999999 9999999999      8888899999999999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=2e-10  Score=92.33  Aligned_cols=143  Identities=13%  Similarity=0.141  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHH
Q 025965           86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR--------NQDLEKAFTEFKA  157 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~  157 (245)
                      ...+.......+.+.++..|.+.+...|.           ++.  ...+++.+|.++..        .|++++|+..|++
T Consensus        56 ~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-----------~~~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~  122 (261)
T 3qky_A           56 FYLARAYYQNKEYLLAASEYERFIQIYQI-----------DPR--VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL  122 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------CTT--HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHCCC-----------Cch--hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            33344444445678888888888887764           222  34567788999999        9999999999999


Q ss_pred             HHHHHHhCCChHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc-
Q 025965          158 ALELAQNVKDPIEE-----------KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL-  225 (245)
Q Consensus       158 al~l~~~~~d~~~~-----------~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~-  225 (245)
                      +++..|+.......           ...+..+|.++...|+|++|+..|+++++.   ..+.+....+++.+|.+|..+ 
T Consensus       123 ~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          123 FIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA---YPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHhc
Confidence            99988764332211           111288999999999999999999999987   223334788999999999977 


Q ss_pred             ---------CCHHHHHHHHHHHHHHhhc
Q 025965          226 ---------GDLERAARFYDKYISRLES  244 (245)
Q Consensus       226 ---------g~~~~A~~~y~~al~~~~~  244 (245)
                               |++++|...|+++++...+
T Consensus       200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          200 EQSVRARQPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccchhhcccchHHHHHHHHHHHHHHCCC
Confidence                     9999999999999987643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.23  E-value=6.8e-11  Score=103.47  Aligned_cols=148  Identities=16%  Similarity=0.143  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 025965           80 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  159 (245)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  159 (245)
                      .....+.+.+.......+.+.++..|.+++...+....... +...........+++++|.+|..+|+|++|+.+|++++
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34446666677777777889999999999988765211000 00001123346788899999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 025965          160 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR-FYDKY  238 (245)
Q Consensus       160 ~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~-~y~~a  238 (245)
                      ++.++      ...+++++|.++..+|+|++|+.+|++++++      +|....++.+++.++..+|++++|.. .|.+.
T Consensus       345 ~~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          345 GLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887      7889999999999999999999999999998      78888999999999999999998864 44544


Q ss_pred             HH
Q 025965          239 IS  240 (245)
Q Consensus       239 l~  240 (245)
                      +.
T Consensus       413 f~  414 (457)
T 1kt0_A          413 FK  414 (457)
T ss_dssp             --
T ss_pred             Hh
Confidence            43

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.23  E-value=4.7e-11  Score=102.14  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREG  206 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~~~~~~  206 (245)
                      .+....++..+|.++...|++++|+..|++++++.|+      ...+++++|.++..+|+ +++|+..|++++++     
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----  161 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----  161 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----
Confidence            3456667888899999999999999999999999998      88999999999999997 99999999999999     


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          207 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       207 d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                       +|....+|+++|.++..+|++++|+.+|+++++.-.
T Consensus       162 -~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          162 -QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA  197 (382)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence             888999999999999999999999999999998643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.23  E-value=1.9e-11  Score=102.86  Aligned_cols=109  Identities=18%  Similarity=0.208  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----------PIEEKKAARGLGASLQRQGKYREAIKYHS  196 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-----------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~  196 (245)
                      ....+..+...|..++..|+|++|+..|++++++.+....           ......++.++|.++..+|+|++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456778889999999999999999999999988665110           00011489999999999999999999999


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          197 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       197 ~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +++++      +|....+++++|.+|..+|++++|..+|+++++..
T Consensus       255 ~al~~------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          255 IVLTE------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             HHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            99998      78888999999999999999999999999998654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.23  E-value=2e-10  Score=94.26  Aligned_cols=119  Identities=18%  Similarity=0.204  Sum_probs=101.1

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+..++++++..+.      ...++.
T Consensus       153 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  210 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNPN----------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWN  210 (327)
T ss_dssp             HHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHH
Confidence            445555566666654432                2346778899999999999999999999998776      577899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|.++...|++++|+.+++++++.      .|....++.++|.+|...|++++|..+++++++...
T Consensus       211 ~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  271 (327)
T 3cv0_A          211 KLGATLANGNRPQEALDAYNRALDI------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV  271 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999998      677788999999999999999999999999998754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.22  E-value=3.5e-10  Score=97.07  Aligned_cols=144  Identities=10%  Similarity=0.052  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH
Q 025965           90 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  169 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~  169 (245)
                      .-+....+.+.+++.+.+++...+.          ..+..........+|.++...|++++|+.++++++...+..++..
T Consensus        63 ~~y~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           63 QLYVTMGAKDKLREFIPHSTEYMMQ----------FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHTHHHHHT----------SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHH----------ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            3333444667777777777776654          233344555666789999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ....++.++|.++...|+|++|+..+++++.......+.+....++.++|.+|..+|++++|..+|++++....
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            88899999999999999999999999999999998888999999999999999999999999999999987653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.22  E-value=3.9e-10  Score=96.77  Aligned_cols=155  Identities=10%  Similarity=0.039  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccccccCCCcccccc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025965           88 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIV-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  166 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  166 (245)
                      +.++.....+.+.+++.|.++++..+............ ........+...+|.+|...|++++|.+++.++++..+.++
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            45555555677888888888888776643332222111 11233445677899999999999999999999999999988


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          167 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       167 d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +..........+|.++...|++++|+.++++++....+.++....+.++.++|.+|...|+|++|..++++++...
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            8777778888999999999999999999999999999999989999999999999999999999999999988764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=1.5e-10  Score=82.04  Aligned_cols=98  Identities=28%  Similarity=0.475  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +++.+|..+...|++++|...++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+....
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~   70 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------CCCchH
Confidence            4667899999999999999999999987665      4677889999999999999999999999987      566677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++.++|.++...|++++|..+++++++...
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            899999999999999999999999987643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.22  E-value=3.6e-12  Score=88.51  Aligned_cols=100  Identities=10%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..+..+|..++..|++++|+..|++++++.|.      ...++.++|.++..+|++++|+..+++++++....++....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            456778899999999999999999999999887      67889999999999999999999999999882222222223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                      ..++.++|.++..+|+++.|...+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            88899999999999988877665543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.21  E-value=7.3e-11  Score=100.05  Aligned_cols=94  Identities=20%  Similarity=0.311  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      +..+|.++...|++++|+..|++++++.|.      ...++.++|.++...|++++|+..|+++++.      .|....+
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~  307 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADS  307 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcccHHH
Confidence            334455555555555555555555554433      3344555555555555555555555555554      3444455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          215 YGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      +.++|.+|...|++++|..+|+++++
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555555555555555555555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.21  E-value=2.1e-10  Score=89.02  Aligned_cols=101  Identities=13%  Similarity=0.065  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-  209 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-  209 (245)
                      ....+..+|.++...|++++|+.+++++++..+.      ...++..+|.++...|++++|+.+++++++.      .| 
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~  179 (225)
T 2vq2_A          112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDADYYFKKYQSR------VEV  179 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HCS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence            3457778899999999999999999999998776      5778899999999999999999999999987      55 


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .....+..++.++...|++++|..+++.+.+...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p  213 (225)
T 2vq2_A          180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP  213 (225)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            6677788899999999999999999998876654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.21  E-value=8.6e-10  Score=79.25  Aligned_cols=102  Identities=12%  Similarity=0.135  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      ...+.+.......+.+.++..|.+++...|.                ....+.++|.+|..+|+|++|+..+++++++.+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            3445566666677889999999999987664                244778899999999999999999999999998


Q ss_pred             hCC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          164 NVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       164 ~~~-d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +.. +....+.++.++|.++..+|++++|+.+|++++..
T Consensus        74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            764 45557789999999999999999999999999887

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.21  E-value=1.2e-10  Score=101.10  Aligned_cols=114  Identities=15%  Similarity=0.007  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      ..+..+..+|.++..+|++++|+.+|++|+++.+....   ......++.++|.+|..+|++++|+.++++++++.+...
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34556778899999999999999999999999876432   223456789999999999999999999999999988764


Q ss_pred             C--cchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhh
Q 025965          207 E--YSGSTEAYGAIADCYTEL--GDLERAARFYDKYISRLE  243 (245)
Q Consensus       207 d--~~~~~~a~~~la~~y~~~--g~~~~A~~~y~~al~~~~  243 (245)
                      +  .+..+.++.++|.++...  +++++|+++|+++++.-+
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            3  334677888888887665  579999999999998643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.20  E-value=1.1e-11  Score=92.38  Aligned_cols=86  Identities=17%  Similarity=0.251  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCCcchHHHHH
Q 025965          146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTEAY  215 (245)
Q Consensus       146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~----------~~Ai~~~~~al~~~~~~~d~~~~~~a~  215 (245)
                      +.|++|+..+++++++.|+      ...++.++|.++...+++          ++|+..|++||++      +|....++
T Consensus        16 ~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~~~A~   83 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAV   83 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCcHHHH
Confidence            5789999999999999999      899999999999998875          5999999999999      99999999


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHHHhh
Q 025965          216 GAIADCYTELG-----------DLERAARFYDKYISRLE  243 (245)
Q Consensus       216 ~~la~~y~~~g-----------~~~~A~~~y~~al~~~~  243 (245)
                      +++|.+|..+|           ++++|+++|++|+++-.
T Consensus        84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            99999999885           89999999999998743

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.20  E-value=2.3e-10  Score=94.84  Aligned_cols=132  Identities=20%  Similarity=0.174  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+...+.......+.+.++..|.+++...|.                ....+..+|.++...|++++|+..++++++..|
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   68 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM   68 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3444445555555677777888888876553                134777889999999999999999999999877


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHH------------HHHHHHcCCH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAI------------ADCYTELGDL  228 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~---~~~~a~~~l------------a~~y~~~g~~  228 (245)
                      .      ...++..+|.++...|++++|+..|+++++.      .|   ....++..+            |.++...|++
T Consensus        69 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           69 D------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY  136 (359)
T ss_dssp             T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             C------cchHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence            6      5688999999999999999999999999887      66   667777666            7999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 025965          229 ERAARFYDKYISRLE  243 (245)
Q Consensus       229 ~~A~~~y~~al~~~~  243 (245)
                      ++|...++++++...
T Consensus       137 ~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A          137 TAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999987643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.20  E-value=6.4e-11  Score=99.19  Aligned_cols=126  Identities=20%  Similarity=0.257  Sum_probs=102.7

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+..|++++++.+.      ...++.
T Consensus       232 ~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~  289 (368)
T 1fch_A          232 EYDKAVDCFTAALSVRPN----------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSRY  289 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHH
Confidence            455666666666665432                1346778899999999999999999999998776      678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGE-----YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d-----~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ++|.++...|++++|+.+|++++++.....+     .+....++.++|.+|..+|++++|...++++++.+.+
T Consensus       290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  362 (368)
T 1fch_A          290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT  362 (368)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence            9999999999999999999999999654321     1223789999999999999999999999999887753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.20  E-value=1.3e-10  Score=86.83  Aligned_cols=134  Identities=12%  Similarity=0.071  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCC-----hHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-----KKEELLSRLKTGKNFLRNQDLEKAFTEF  155 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~g~~~~A~~~~  155 (245)
                      ....+.+.+.......+.+.++..|.+++...+.....   ....++     .+.....+.++|.+|..+|++++|+.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR---EKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT---SCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            34566777777777778888899999998874321000   000011     3445678889999999999999999999


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHcCCHH
Q 025965          156 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLE  229 (245)
Q Consensus       156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~-~a~~~la~~y~~~g~~~  229 (245)
                      ++++++.|.      ...+++.+|.++..+|++++|+..|++++++      +|... .+...++.+....++.+
T Consensus        87 ~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           87 SEVLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999887      7889999999999999999999999999999      77766 56777777776655443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.19  E-value=3.2e-10  Score=89.46  Aligned_cols=140  Identities=14%  Similarity=0.064  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +.+.+.......+.+.++..|.+.+...|.           .+.  ...+++.+|.+|+..|++++|+..|+++++..|+
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~   73 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPF-----------GPY--SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT   73 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------STT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------ChH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            344455555566778888888888876654           221  2346778899999999999999999999998876


Q ss_pred             CCChHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHcCCcchHH--------------
Q 025965          165 VKDPIEEKKAARGLGASLQR------------------QGKYREAIKYHSMVLQISEREGEYSGST--------------  212 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~------------------~g~~~~Ai~~~~~al~~~~~~~d~~~~~--------------  212 (245)
                      ...   ...+++.+|.++..                  +|++++|+..|+++++....   .+...              
T Consensus        74 ~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~  147 (225)
T 2yhc_A           74 HPN---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN---SQYTTDATKRLVFLKDRLA  147 (225)
T ss_dssp             CTT---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT---CTTHHHHHHHHHHHHHHHH
T ss_pred             CCc---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC---ChhHHHHHHHHHHHHHHHH
Confidence            332   34577888888775                  67999999999999887332   22111              


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .....+|.+|...|++++|+..|+++++...
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  178 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYP  178 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence            2236789999999999999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.19  E-value=1.1e-11  Score=109.02  Aligned_cols=100  Identities=16%  Similarity=0.185  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      +..+..+|..+...|++++|+..|++|+++.+.      ...++.++|.++..+|+|++|+.++++++++      +|..
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~   73 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKY   73 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence            334455688888899999999999999998877      6888999999999999999999999999988      7778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.+++++|.+|..+|++++|.++|+++++...
T Consensus        74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p  105 (477)
T 1wao_1           74 IKGYYRRAASNMALGKFRAALRDYETVVKVKP  105 (477)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88999999999999999999999999988643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=1.3e-10  Score=98.57  Aligned_cols=97  Identities=23%  Similarity=0.198  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ....+|.++...|++++|...|+++++..|+      ...++.++|.++...|++++|+..|++++++      +|....
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~  204 (388)
T 1w3b_A          137 VRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLD  204 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHH
Confidence            4556677888888888888888888777665      5677788888888888888888888888877      677777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++.++|.++...|++++|...|+++++..
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~  233 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLS  233 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            88888888888888888888888887654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.19  E-value=1.1e-10  Score=95.80  Aligned_cols=105  Identities=10%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch--
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--  210 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~--  210 (245)
                      ..+..+|.++...|++++|+..++++++..+.      ...++.++|.++...|++++|+.++++++++.....+..+  
T Consensus       207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  280 (327)
T 3cv0_A          207 QLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA  280 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc
Confidence            46778899999999999999999999998776      6778899999999999999999999999998433211111  


Q ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 ----STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ----~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                          ...++.++|.+|...|++++|...++++++.++
T Consensus       281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA  317 (327)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred             hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence                788999999999999999999999999888765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.18  E-value=3.9e-10  Score=84.03  Aligned_cols=114  Identities=13%  Similarity=0.068  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      ....+.+.+.......+.+.++..|.+++...|.-...   + ..+..+..+.++.++|.++..+|+|++|+..|++|++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---E-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---S-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---h-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34567777888888889999999999999998762110   0 1122234566889999999999999999999999999


Q ss_pred             H-------HHhCCChHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          161 L-------AQNVKDPIEEKKAA----RGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       161 l-------~~~~~d~~~~~~a~----~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      +       .|+      ...++    +++|.++..+|++++|+..|++++++...
T Consensus        86 l~n~~~e~~pd------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           86 YFNRRGELNQD------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHHHHCCTTST------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCCCc------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            9       665      67777    99999999999999999999999999544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.18  E-value=2.5e-10  Score=80.74  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Q 025965           86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  165 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  165 (245)
                      ...+.......+.+.++..+.+++...+.                ....+..+|.++...|++++|+..++++++..+. 
T Consensus        16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-   78 (131)
T 2vyi_A           16 KTEGNEQMKVENFEAAVHFYGKAIELNPA----------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-   78 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-
Confidence            33333333444566666777777765543                1346778899999999999999999999998776 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCH
Q 025965          166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL  228 (245)
Q Consensus       166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~  228 (245)
                           ...++..+|.++...|++++|+.+++++++.      .|....++..+|.++..+|++
T Consensus        79 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 -----YSKAYGRMGLALSSLNKHVEAVAYYKKALEL------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTTC
T ss_pred             -----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHhcC
Confidence                 5778999999999999999999999999998      677778999999999998875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.18  E-value=3.9e-10  Score=89.53  Aligned_cols=102  Identities=16%  Similarity=0.064  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ....+..+|.++...|++++|+.+++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+.
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~  207 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMADLLYKEREYVPARQYYDLFAQG------GGQ  207 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcC
Confidence            3456778899999999999999999999998765      5778899999999999999999999999876      566


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ...++..++.+|...|++++|..+++++++...+
T Consensus       208 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            6788999999999999999999999999987643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.18  E-value=2.2e-10  Score=91.88  Aligned_cols=126  Identities=17%  Similarity=0.100  Sum_probs=100.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.                ....+..+|...+..+++++|+..+++++++.|+      ...++.
T Consensus       123 ~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~  180 (272)
T 3u4t_A          123 NFPLAIQYMEKQIRPTTT----------------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN------IYIGYL  180 (272)
T ss_dssp             CHHHHHHHHGGGCCSSCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------chHHHH
Confidence            455566666666655332                2346777895555567999999999999998887      578889


Q ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          177 GLGASLQRQGK---YREAIKYHSMVLQISEREGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       177 ~lg~~~~~~g~---~~~Ai~~~~~al~~~~~~~d--~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      .+|.++...|+   +++|+..|++++++.+..++  ......++..+|.+|...|++++|.++|+++++..++
T Consensus       181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT  253 (272)
T ss_dssp             HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            99999999999   99999999999999765544  2335678999999999999999999999999987653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.18  E-value=2.1e-10  Score=76.53  Aligned_cols=84  Identities=26%  Similarity=0.428  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ....+..+|..+...|++++|+.+|+++++..+.      ...++.++|.++...|++++|+.++++++++      .|.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~   75 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCC
Confidence            4557778899999999999999999999998776      5778899999999999999999999999998      777


Q ss_pred             HHHHHHHHHHHHHHcC
Q 025965          211 STEAYGAIADCYTELG  226 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g  226 (245)
                      ...++.++|.++...|
T Consensus        76 ~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           76 NAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            7889999999988765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.16  E-value=7.4e-10  Score=98.84  Aligned_cols=105  Identities=18%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ..+..+|.+|...|++++|+..|+++++..++.+.... ...++..+|.++...|++++|+..++++++.      .|..
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~  549 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL------STND  549 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SSCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence            35667899999999999999999999998876543332 3678899999999999999999999999888      6767


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++..+|.+|...|++++|.++|+++++...
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            78999999999999999999999999988654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.16  E-value=2.9e-10  Score=80.93  Aligned_cols=115  Identities=13%  Similarity=0.160  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +...+.......+.+.++..+.+++...+.                ....+..+|.++...|++++|+.++++++++.+.
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            333333444444556666777777765543                1346778899999999999999999999998776


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  227 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~  227 (245)
                            ...++.++|.++...|++++|+.+++++++.      .|....++..++.++..+|+
T Consensus        83 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           83 ------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcC
Confidence                  6788999999999999999999999999998      77778899999999988764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.16  E-value=9.7e-10  Score=91.07  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      ....|..+...|++++|+..++++++..+.  ++.....++..+|.++...|++++|+..++++++.      .|..+.+
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~  308 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNA  308 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHH
Confidence            345699999999999999999999987654  44555677889999999999999999999999998      7777889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.++|.+|...|++++|..+|+++++..+
T Consensus       309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.16  E-value=2.8e-11  Score=106.33  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---------GKYREAIKYHSMVLQIS  202 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~---------g~~~~Ai~~~~~al~~~  202 (245)
                      ..++..+|.+|...|++++|+.+|++++++.++       ..++.++|.++...         |++++|+..|++++++ 
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-  208 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-  208 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-
Confidence            447788899999999999999999999987654       37899999999999         9999999999999999 


Q ss_pred             HHcCCcchHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhh
Q 025965          203 EREGEYSGSTEAYGAIADCYTEL--------GDLERAARFYDKYISRLE  243 (245)
Q Consensus       203 ~~~~d~~~~~~a~~~la~~y~~~--------g~~~~A~~~y~~al~~~~  243 (245)
                           +|....+++++|.+|...        |++++|..+|+++++...
T Consensus       209 -----~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          209 -----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             -----CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence                 788889999999999999        999999999999998643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.15  E-value=6.7e-10  Score=96.36  Aligned_cols=107  Identities=11%  Similarity=0.009  Sum_probs=94.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST  212 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~  212 (245)
                      ....-+..+|+|++|...+++++++....  .+.......+.++|.+|..+|+|++|+.++++++++.++.  .+.|..+
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            33445678899999999999999876543  3556688899999999999999999999999999999874  5688999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++++|.+|..+|++++|..+|++|+++.+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.14  E-value=2.6e-10  Score=97.08  Aligned_cols=139  Identities=15%  Similarity=0.120  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      .+...+.......+.+.++..|.+++...+...............+.....++++|.+|..+|++++|+.++++++++.+
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            45555555555567788888888888754321000000000123455677888999999999999999999999999887


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF  234 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~  234 (245)
                      .      ...+++++|.++..+|++++|+.+|++++++      .|....++..++.++..+++++++...
T Consensus       305 ~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          305 S------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             h------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6      7889999999999999999999999999999      777788999999999999998887653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.13  E-value=6.7e-10  Score=82.56  Aligned_cols=102  Identities=11%  Similarity=0.041  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 025965           78 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  157 (245)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  157 (245)
                      .+...+.+...+.......+.+.++..|.+++...|.                ....+..+|.++...|+|++|+..|++
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------------NVDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            3455566677777777777889999999999987764                244778899999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          158 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       158 al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ++++.|+      ...+++++|.++..+|++++|+..|++++++
T Consensus        96 al~l~P~------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           96 AFALGKN------DYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHSSS------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999998      7789999999999999999999999999998

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.12  E-value=9e-11  Score=107.61  Aligned_cols=99  Identities=19%  Similarity=0.170  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...++.+|.++..+|++++|+..|++++++.++      ...+++++|.++..+|++++|+..|++++++      +|..
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~  500 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDT------FPGE  500 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTC
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Confidence            346778899999999999999999999999988      7889999999999999999999999999999      8888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.+|..+|++++ +.+|+++++.-.
T Consensus       501 ~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P  531 (681)
T 2pzi_A          501 LAPKLALAATAELAGNTDE-HKFYQTVWSTND  531 (681)
T ss_dssp             SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence            8999999999999999999 999999998643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.11  E-value=1.4e-09  Score=87.10  Aligned_cols=129  Identities=14%  Similarity=0.032  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +...+.......+.+.++..+.+++...+.                ....+..+|.++...|++++|+.+|++++++.+.
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  109 (275)
T 1xnf_A           46 LYERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  109 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence            333344444445667777778888776553                1346778899999999999999999999998876


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                            ...++.++|.++...|++++|+.++++++++      .|.........+. +...|++++|...+++++...
T Consensus       110 ------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A          110 ------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD------DPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             ------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHS
T ss_pred             ------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhcC
Confidence                  5688999999999999999999999999988      4544444444443 356699999999998888754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.11  E-value=2.9e-10  Score=79.85  Aligned_cols=81  Identities=12%  Similarity=0.140  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH
Q 025965          150 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  229 (245)
Q Consensus       150 ~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~  229 (245)
                      +|+..|+++++..+.      ...++.++|.++...|++++|+.+|++++++      .|....+++++|.+|...|+++
T Consensus         3 ~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHH
Confidence            456666776666554      4566777777777777777777777777776      5656667777777777777777


Q ss_pred             HHHHHHHHHHHHh
Q 025965          230 RAARFYDKYISRL  242 (245)
Q Consensus       230 ~A~~~y~~al~~~  242 (245)
                      +|..+|+++++..
T Consensus        71 ~A~~~~~~al~~~   83 (115)
T 2kat_A           71 GARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            7777777777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.11  E-value=3.3e-10  Score=85.84  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH--HHHHHHHHHHHHHcC
Q 025965          149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEAYGAIADCYTELG  226 (245)
Q Consensus       149 ~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~--~~a~~~la~~y~~~g  226 (245)
                      .+|+..++++++..|+      ...++.++|.++...|++++|+..|+++++.      +|..  ..++.++|.++..+|
T Consensus        91 ~~a~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           91 SPELKRLEQELAANPD------NFELACELAVQYNQVGRDEEALELLWNILKV------NLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             CHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTTTTTHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CcccChHHHHHHHHHHHHHhC
Confidence            3467777777777766      6788999999999999999999999999887      5543  568999999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 025965          227 DLERAARFYDKYISRL  242 (245)
Q Consensus       227 ~~~~A~~~y~~al~~~  242 (245)
                      +.++|...|++++...
T Consensus       159 ~~~~A~~~y~~al~~~  174 (176)
T 2r5s_A          159 QGNAIASKYRRQLYSI  174 (176)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            9999999999998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=7.7e-10  Score=87.19  Aligned_cols=105  Identities=9%  Similarity=-0.052  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..++..|..++..|++++|+..|+++++..|.   ......++..+|.++...|+|++|+..|+++++.   ..+.+...
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~P~~~~~~   78 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNID   78 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCCcHH
Confidence            36778899999999999999999999987664   2224578999999999999999999999999987   22344456


Q ss_pred             HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTE------------------LGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~------------------~g~~~~A~~~y~~al~~~~  243 (245)
                      .+++.+|.+|..                  .|++++|...|+++++...
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P  127 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP  127 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence            789999999986                  5799999999999998654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.09  E-value=1.1e-09  Score=94.13  Aligned_cols=134  Identities=20%  Similarity=0.193  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965           82 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  161 (245)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  161 (245)
                      ...+...+.......+.+.++..|.+++...+.                ....+..+|.++...|++++|+..++++++.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            344445455555555677777788887765543                2457778899999999999999999999998


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH---HHH------------HHHHHHHHHcC
Q 025965          162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST---EAY------------GAIADCYTELG  226 (245)
Q Consensus       162 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~---~a~------------~~la~~y~~~g  226 (245)
                      .+.      ...++..+|.++..+|++++|+..|+++++.      .|...   .++            ..+|.+|...|
T Consensus        90 ~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  157 (450)
T 2y4t_A           90 KMD------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG  157 (450)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            877      6788999999999999999999999999876      45444   444            44477799999


Q ss_pred             CHHHHHHHHHHHHHHhh
Q 025965          227 DLERAARFYDKYISRLE  243 (245)
Q Consensus       227 ~~~~A~~~y~~al~~~~  243 (245)
                      ++++|..+|+++++...
T Consensus       158 ~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A          158 DYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             CHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHhCC
Confidence            99999999999987643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.09  E-value=6.4e-10  Score=83.09  Aligned_cols=111  Identities=15%  Similarity=0.078  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      +.+...+.......+.+.++..|.+++...+.                ....+..+|.+|...|++++|+.+|++++++.
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   75 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD   75 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34455555555556778888888888887654                24477889999999999999999999999998


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  221 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~  221 (245)
                      ++      ...++.++|.++..+|++++|+.+|++++++      .|....++.+.+..
T Consensus        76 p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           76 PK------YSKAWSRLGLARFDMADYKGAKEAYEKGIEA------EGNGGSDAMKRGLE  122 (164)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HSSSCCHHHHHHHH
T ss_pred             CC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCchHHHHHHHHH
Confidence            87      6889999999999999999999999999999      44444444444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.09  E-value=1.6e-09  Score=96.66  Aligned_cols=105  Identities=13%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH-
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS-  211 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~-  211 (245)
                      ..+..+|.+|...|++++|...|+++++..+.      ...++..+|.++.+.|++++|+..|+++++...+.+.+|.. 
T Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~  515 (597)
T 2xpi_A          442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW  515 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence            35667899999999999999999999987665      56778999999999999999999999999998776666664 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.+|...|++++|.+.|+++++...
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            78999999999999999999999999987643

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.09  E-value=6.9e-10  Score=97.56  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISE  203 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~----------g~~~~Ai~~~~~al~~~~  203 (245)
                      .+..+|.++...|++++|+..|+++++..+...+.......+.++|.++...          |++++|+.+|+++++.  
T Consensus       380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--  457 (537)
T 3fp2_A          380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--  457 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--
Confidence            5566788888889999999999998888887665555555567788888888          8999999999999888  


Q ss_pred             HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                          .|....++.++|.+|...|++++|.++|+++++...
T Consensus       458 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  493 (537)
T 3fp2_A          458 ----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR  493 (537)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             ----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                677778999999999999999999999999998754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.3e-09  Score=94.96  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ...+..+...|..++..|++++|+..|+++++..|+       ..++.++|.++...|++++|+..++++++.      .
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~   69 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEMSTKALEL------K   69 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------C
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------C
Confidence            446778889999999999999999999999998753       678999999999999999999999999998      7


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          209 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      |....++..+|.+|..+|++++|...|+++++..
T Consensus        70 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  103 (514)
T 2gw1_A           70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG  103 (514)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            8888999999999999999999999999998654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.07  E-value=7.1e-10  Score=80.98  Aligned_cols=101  Identities=10%  Similarity=-0.044  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      ..+.+...+.......+.+.++..|.+++...|.                ....+..+|.++...|++++|+..|+++++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----------------DARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3344455555555556777888888888876654                234677889999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 025965          161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~  203 (245)
                      +.|+      ...++.++|.++..+|++++|+..|++++++..
T Consensus        81 ~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           81 MDIN------EPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9887      677899999999999999999999999999844

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.06  E-value=1.1e-09  Score=96.16  Aligned_cols=100  Identities=22%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+..+|.++...|++++|+..+++++++.+.      ...++.++|.++...|++++|+..++++++.      .|..
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~  377 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLK------FPTL  377 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Confidence            345677889999999999999999999888776      4567888999999999999999999999888      6666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++|.+|...|++++|..+|+++++...
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            77888999999999999999999999887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.06  E-value=1e-09  Score=94.38  Aligned_cols=100  Identities=21%  Similarity=0.239  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      .....++.+|..+...|++++|+..|+++++..+.      ...++..+|.++...|++++|+..|+++++.      .|
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p   91 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIQL------KM   91 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence            35667788899999999999999999999988776      6888999999999999999999999999998      77


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ....++..+|.+|...|++++|..+|+++++.
T Consensus        92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  123 (450)
T 2y4t_A           92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS  123 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            77899999999999999999999999999864

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.05  E-value=1.2e-09  Score=89.94  Aligned_cols=121  Identities=16%  Similarity=0.116  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025965           95 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTG--KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  172 (245)
Q Consensus        95 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~  172 (245)
                      .++.+.++..+.+++...+.            +    ....+..|  ..+...|++++|+..|+++++..|.      ..
T Consensus       143 ~g~~~~A~~~l~~~~~~~p~------------~----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~~  200 (291)
T 3mkr_A          143 LDRLDLARKELKKMQDQDED------------A----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TL  200 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT------------C----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------CH
T ss_pred             CCCHHHHHHHHHHHHhhCcC------------c----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------cH
Confidence            34566777777777665442            1    11122122  2333458899999999999988766      67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhh
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER-AARFYDKYISRLE  243 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~-A~~~y~~al~~~~  243 (245)
                      .+++++|.++..+|++++|+..++++++.      +|..+.++.++|.++...|+.++ +..+++++++.-.
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDK------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            78999999999999999999999999998      88889999999999999999976 5688899887644

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.05  E-value=6.5e-10  Score=91.15  Aligned_cols=129  Identities=12%  Similarity=0.085  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA------  158 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a------  158 (245)
                      +...........+.+.++..|++++...|.                ...+++.+|.++...|++++|+..++++      
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~  183 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD  183 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence            344444444455667777777777776654                1235566677777777777776655554      


Q ss_pred             ----------------------------HHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          159 ----------------------------LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       159 ----------------------------l~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                                                  ++..|+      ...++.++|.++...|++++|+..|+++++.      +|+
T Consensus       184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~  251 (287)
T 3qou_A          184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQVGRNEEALELLFGHLRX------DLT  251 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccc
Confidence                                        333333      4567788888888888888888888888887      555


Q ss_pred             H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          211 S--TEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       211 ~--~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .  ..++.++|.+|..+|+.++|...|++++..
T Consensus       252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          252 AADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            5  678888888888888888888888888764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.04  E-value=1.1e-10  Score=98.09  Aligned_cols=149  Identities=9%  Similarity=0.042  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCcccccc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIV-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  161 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  161 (245)
                      ..+...+.......+.+.++..|.+++...+............ ........+++++|.+|..+|+|++|+.++++++++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444444444444466777778888887655411000000000 000011136788999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 025965          162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YTELGDLERAARFYDKYIS  240 (245)
Q Consensus       162 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~-y~~~g~~~~A~~~y~~al~  240 (245)
                      .++      ...+++++|.++..+|+|++|+.+|++++++      +|....++.+++.+ ....++.+++...|.+++.
T Consensus       260 ~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l------~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          260 EEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKY------APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             CTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            887      7889999999999999999999999999988      77788899999988 4556778889999999887


Q ss_pred             Hhh
Q 025965          241 RLE  243 (245)
Q Consensus       241 ~~~  243 (245)
                      ...
T Consensus       328 ~~p  330 (338)
T 2if4_A          328 GKD  330 (338)
T ss_dssp             ---
T ss_pred             CCC
Confidence            653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.03  E-value=6.7e-10  Score=96.91  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~---~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+..+|.++...|++++|+..++++++..+...+......++.++|.++..   .|++++|+.+++++++.      .|.
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~  447 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------DPR  447 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------Ccc
Confidence            566789999999999999999999999988754433334588999999999   99999999999999998      677


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++..+|.+|...|++++|..+|+++++...
T Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            788999999999999999999999999998654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.03  E-value=7.6e-10  Score=81.75  Aligned_cols=100  Identities=9%  Similarity=-0.019  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 025965           81 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  160 (245)
Q Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  160 (245)
                      ..+.+...+.......+.+.++..|.+++...|.                ....+..+|.++...|++++|+..|+++++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3344555555566666778888888888876654                234667889999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 025965          161 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  202 (245)
Q Consensus       161 l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~  202 (245)
                      +.|+      ...+++++|.++..+|++++|+..|++++++.
T Consensus        84 l~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           84 MDIX------EPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            9887      67889999999999999999999999999984

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.03  E-value=8.9e-10  Score=95.58  Aligned_cols=137  Identities=9%  Similarity=-0.010  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH--H
Q 025965           93 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI--E  170 (245)
Q Consensus        93 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~--~  170 (245)
                      ...++.+.+++.|+++++..+...       ........+..+.++|.+|..+|++++|..++++++++.+...++.  .
T Consensus        62 ~~~G~~~eAl~~~~kAl~~~~~~~-------~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~  134 (472)
T 4g1t_A           62 HLKGQNEAALECLRKAEELIQQEH-------ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE  134 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHS-------GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence            334467788888888887654310       0011223455777899999999999999999999999999865432  2


Q ss_pred             HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHh
Q 025965          171 EKKAARGLGASLQRQ--GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT---ELGDLERAARFYDKYISRL  242 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~--g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~---~~g~~~~A~~~y~~al~~~  242 (245)
                      .+.++.++|.++...  ++|++|+.+|++++++      +|..+.++.++|.++.   ..++.++|++.|+++++.-
T Consensus       135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK------KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence            456777888777664  5799999999999999      7877888888888754   5677889999999998764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=4.9e-09  Score=84.51  Aligned_cols=94  Identities=18%  Similarity=0.291  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISE  203 (245)
Q Consensus       132 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~  203 (245)
                      ..++..+|.+|..    .+++++|+.+|+++++.  .      ...++.++|.++..    .+++++|+.+|+++++.  
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--  143 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--K------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--  143 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--C------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--
Confidence            3467778888888    88999999888888775  1      46778888988888    88999999999888765  


Q ss_pred             HcCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          204 REGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       204 ~~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                          .  ...++.++|.+|..    .+++++|..+|+++++.
T Consensus       144 ----~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          144 ----N--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             ----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ----C--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence                2  35678888998888    88999999999888765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.00  E-value=2.8e-10  Score=100.07  Aligned_cols=112  Identities=20%  Similarity=0.231  Sum_probs=91.7

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..|.+++...+.                ...++..+|.+|..+|++++|+..+++++++.+.      ...+++
T Consensus        21 ~~~~A~~~~~~Al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~   78 (477)
T 1wao_1           21 DYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYY   78 (477)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            455666667777776553                2457788999999999999999999999998776      678999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC--YTELGDLERAARFYD  236 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~--y~~~g~~~~A~~~y~  236 (245)
                      ++|.++..+|++++|+.+|++++++      .|....++.+++.+  +...|++++|++.++
T Consensus        79 ~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           79 RRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999998      66666788888888  888999999999988

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.00  E-value=1.3e-08  Score=88.18  Aligned_cols=131  Identities=13%  Similarity=0.070  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-
Q 025965           87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-  165 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-  165 (245)
                      +.+.+.......+.++..+++++.....        ..-.+....+.++.++|.+|..+|+|++|+.++++++++.... 
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~--------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l  363 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSE--------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF  363 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSC--------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccC--------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence            3333444444445555566666554322        1124566778888999999999999999999999999998874 


Q ss_pred             -CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHc
Q 025965          166 -KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       166 -~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la~~y~~~  225 (245)
                       .++...+..++++|.+|..+|+|++|+.+|++|+++.+..  .|.|....++.+++.+..++
T Consensus       364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence             4667788899999999999999999999999999999975  46788888999999887654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.00  E-value=4.2e-09  Score=84.93  Aligned_cols=93  Identities=17%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 025965          133 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       133 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~  204 (245)
                      .++..+|.+|..    .+++++|+.+|+++++..        ...++.++|.++..    .+++++|+.+|+++++.   
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---  107 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---  107 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence            445566777777    777777777777776541        35566777777777    77777777777777654   


Q ss_pred             cCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          205 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       205 ~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                           +.+.++.++|.+|..    .|++++|.++|+++++.
T Consensus       108 -----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A          108 -----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             -----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             -----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence                 135667777777777    77777777777777653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.99  E-value=8e-09  Score=72.15  Aligned_cols=102  Identities=26%  Similarity=0.426  Sum_probs=82.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+..++++++..+.      ...++.
T Consensus        24 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~   81 (125)
T 1na0_A           24 DYDEAIEYYQKALELDPN----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWY   81 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHH
Confidence            445555566666654432                1236677899999999999999999999987665      467788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  226 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g  226 (245)
                      .+|.++...|++++|+.+++++++.      .|....++.++|.++...|
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           82 NLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999988      7777889999999987654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.98  E-value=2.9e-09  Score=73.08  Aligned_cols=66  Identities=12%  Similarity=0.143  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ...++.++|.++..+|+|++|+.+|++++++      +|....++.++|.+|..+|++++|..+|+++++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4566778888888888888888888888887      67677788888888888888888888888888764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=3e-09  Score=80.46  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI------------  201 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~------------  201 (245)
                      ..+..|..+...|++++|+..|+++++..|+      ...++.++|.++...|++++|+..++++++.            
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~   81 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK   81 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence            3556688888888888888888888888887      7788888888888888888888877665322            


Q ss_pred             ---HHHcCC-------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          202 ---SEREGE-------------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       202 ---~~~~~d-------------~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                         ....+.             +|....+++++|.++...|++++|...|+++++.-
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  138 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN  138 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence               111111             45667899999999999999999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.97  E-value=1.3e-08  Score=71.82  Aligned_cols=112  Identities=15%  Similarity=0.185  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CChHH
Q 025965           92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIE  170 (245)
Q Consensus        92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~  170 (245)
                      .....+.+.++..+.+++...+.                ....+..+|.++...|++++|+.+++++++..+.. .+...
T Consensus        14 ~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A           14 AYKKKDFDTALKHYDKAKELDPT----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence            33334566666777777765543                13467788999999999999999999999999874 34444


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  226 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g  226 (245)
                      ...++.++|.++...|++++|+.+|+++++.      .+. ......++.+....+
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCC-HHHHHHHHHHHHHHH
Confidence            4888999999999999999999999999987      442 566777777766543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.96  E-value=5.1e-09  Score=75.18  Aligned_cols=116  Identities=18%  Similarity=0.180  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Q 025965           86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  165 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  165 (245)
                      ...+.......+.+.++..|.+++...+.                ....+..+|.++...|++++|+..+++++++.+. 
T Consensus        13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-   75 (137)
T 3q49_B           13 KEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-   75 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-
Confidence            33344444445667777788888876653                1347778899999999999999999999999887 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965          166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  224 (245)
Q Consensus       166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~  224 (245)
                           ...++.++|.++...|++++|+.+|++++++....... ........+..+...
T Consensus        76 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           76 -----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN-FGDDIPSALRIAKKK  128 (137)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CTTHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH-HHHHHHHHHHHHHHH
Confidence                 77899999999999999999999999999996542211 133444555555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.95  E-value=6.6e-09  Score=71.91  Aligned_cols=109  Identities=12%  Similarity=0.144  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Q 025965           86 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  165 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  165 (245)
                      ...+.......+.+.++..+.+++...+.                ....+..+|.++...|++++|+..++++++..+. 
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-   70 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-   70 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-
Confidence            33334444444566677777777776543                1346778899999999999999999999998776 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 025965          166 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  222 (245)
Q Consensus       166 ~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y  222 (245)
                           ...++.++|.++...|++++|+.+++++++.      .|....++..++.+.
T Consensus        71 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           71 -----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH------EANNPQLKEGLQNME  116 (118)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHhh
Confidence                 6778999999999999999999999999887      677777888887764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.94  E-value=1.2e-09  Score=74.24  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=72.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~-a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      +..|..+...|++++|+..|+++++..+.      ... ++.++|.++..+|++++|+.+|++++++      +|....+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~   71 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL------NPDSPAL   71 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHH
Confidence            45689999999999999999999998776      567 8999999999999999999999999998      6666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +.+        +.+++|..+|++++...
T Consensus        72 ~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           72 QAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             HHH--------HHHHHHHHHHCCTTHHH
T ss_pred             HHH--------HHHHHHHHHHHHHhccC
Confidence            533        45677777777766543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.94  E-value=5.7e-09  Score=71.58  Aligned_cols=85  Identities=15%  Similarity=0.249  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...++.+|.+|...|++++|+.+|++++++.|+      ...++.++|.++...|++++|+..|++++++....++.   
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~---   77 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ---   77 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch---
Confidence            446778899999999999999999999999887      67789999999999999999999999999997765553   


Q ss_pred             HHHHHHHHHHHHHcC
Q 025965          212 TEAYGAIADCYTELG  226 (245)
Q Consensus       212 ~~a~~~la~~y~~~g  226 (245)
                       .....+...+...+
T Consensus        78 -~~~~~l~~~l~~~~   91 (100)
T 3ma5_A           78 -KDLSELQDAKLKAE   91 (100)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHcc
Confidence             33344444444433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=5.8e-09  Score=85.44  Aligned_cols=66  Identities=9%  Similarity=-0.028  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ....+.+|.++...|++++|+..|+++++..|+..    ...++.++|.++...|+.++|+..|++++..
T Consensus       219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~----~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA----DGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            44677889999999999999999999999887611    2678999999999999999999999999765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.93  E-value=1.2e-08  Score=83.83  Aligned_cols=99  Identities=14%  Similarity=0.079  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG--ASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg--~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ..+..+|.++..+|++++|...++++++..|+      ........+  ..+...|++++|+..|+++++.      .|.
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------~p~  198 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDED------ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK------CSP  198 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------SCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------CCC
Confidence            36677899999999999999999999987654      111111112  2233458999999999999988      677


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+.+++++|.++..+|++++|...|+++++.-.
T Consensus       199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            788999999999999999999999999998654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.92  E-value=5.6e-09  Score=73.51  Aligned_cols=67  Identities=15%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +....++..+|.+|..+|++++|+.++++++++.|+      ...++.++|.++...|++++|+..++++++.
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            446678889999999999999999999999999887      6889999999999999999999999999988

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.91  E-value=3.1e-08  Score=85.87  Aligned_cols=113  Identities=15%  Similarity=-0.025  Sum_probs=89.4

Q ss_pred             HHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHH
Q 025965           99 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAAR  176 (245)
Q Consensus        99 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~a~~  176 (245)
                      +.++..|++++.....        ..-.+....+.++.++|.+|..+|+|++|..++++++++....  .++...+..++
T Consensus       315 ~eA~~~~~~~L~i~~~--------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          315 SELLEICELSQEKMSS--------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHHHHHHHHHHHHHTT--------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhC--------ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            4445555555554332        1124566788889999999999999999999999999998874  46777889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHH
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIA  219 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~--~d~~~~~~a~~~la  219 (245)
                      ++|.+|..+|+|++|+.+|++|+++.+..  .|.|.......+|.
T Consensus       387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            99999999999999999999999999874  45666666666553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.91  E-value=1.1e-08  Score=79.91  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHc
Q 025965          134 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       134 ~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      +.+.+|.+|..    .+++++|+.+|+++.+..+    ......+++++|.+|..    .+++++|+.+|+++++.    
T Consensus        87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----  158 (212)
T 3rjv_A           87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSE----SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL----  158 (212)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT----SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC----CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----
Confidence            55566777666    6677777777777665322    22256777777777777    66777777777776542    


Q ss_pred             CCcchHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 025965          206 GEYSGSTEAYGAIADCYTEL-G-----DLERAARFYDKYISR  241 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~-g-----~~~~A~~~y~~al~~  241 (245)
                         ++.+.+++++|.+|..- |     ++++|..+|+++++.
T Consensus       159 ---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          159 ---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             ---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence               34556677777777654 3     677777777777654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-08  Score=73.80  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025965           89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  168 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~  168 (245)
                      +.......+.+.++..|.+++...+.             .......+..+|.+|...|++++|+..+++++++.+.    
T Consensus        35 a~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----   97 (148)
T 2dba_A           35 GNELFKCGDYGGALAAYTQALGLDAT-------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----   97 (148)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHTSCCC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC----
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc----
Confidence            33333344566666777777765442             2223567788999999999999999999999998776    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  223 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~  223 (245)
                        ...++.++|.++...|++++|+.+|++++++      .|....++..++.+..
T Consensus        98 --~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           98 --DVKALYRRSQALEKLGRLDQAVLDLQRCVSL------EPKNKVFQEALRNISG  144 (148)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHC
T ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHh
Confidence              5788999999999999999999999999998      6666777777776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.88  E-value=2.9e-08  Score=72.29  Aligned_cols=88  Identities=17%  Similarity=0.153  Sum_probs=78.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +|..|...+..++|+.+|++|.+.  .      ...+++++|.+|..    .+|+++|+.+|+++.+.        +.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--------g~~~   94 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--N------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQD   94 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--C------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--------CCHH
Confidence            799999999999999999999875  2      57889999999999    89999999999999753        3467


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                      +++++|.+|..    .+|+++|.++|+++.+.
T Consensus        95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            89999999999    99999999999999875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.88  E-value=2.4e-08  Score=69.79  Aligned_cols=70  Identities=26%  Similarity=0.394  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      ...++.+|.+|...|++++|+.+|++++++.+.      ...++.++|.++...|++++|+..|++++++....++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            347778899999999999999999999998887      6778999999999999999999999999999665444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.87  E-value=4.6e-08  Score=69.28  Aligned_cols=110  Identities=16%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHH
Q 025965           92 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE  171 (245)
Q Consensus        92 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~  171 (245)
                      .....+.+.++..+.+.+...+.           .+  ....+++.+|.++...|++++|+..|+++++..|+..   ..
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~p~-----------~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~   75 (129)
T 2xev_A           12 ALKNGKYDDASQLFLSFLELYPN-----------GV--YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KA   75 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSS-----------ST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---TH
T ss_pred             HHHhCCHHHHHHHHHHHHHHCCC-----------Cc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---cc
Confidence            33344566666777777776553           11  1234677889999999999999999999999877621   13


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  223 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~  223 (245)
                      ..++..+|.++..+|++++|+.+|+++++.      .|....+......+-.
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ------YPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCChHHHHHHHHHHH
Confidence            778999999999999999999999999988      4544444444444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.87  E-value=4.2e-09  Score=74.98  Aligned_cols=87  Identities=11%  Similarity=-0.010  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 025965           93 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  172 (245)
Q Consensus        93 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~  172 (245)
                      ....+.+.++..+.+++...|.                ...+++.+|.++...|++++|+..|++++++.|+      ..
T Consensus        28 ~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~   85 (121)
T 1hxi_A           28 LKLANLAEAALAFEAVCQKEPE----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DI   85 (121)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Confidence            3344566777778888876654                2447778899999999999999999999999988      77


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .++.++|.++...|++++|+..+++++++
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           86 AVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999887

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.86  E-value=4.6e-09  Score=78.09  Aligned_cols=88  Identities=14%  Similarity=0.194  Sum_probs=73.9

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhCC
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL----------EKAFTEFKAALELAQNVK  166 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~l~~~~~  166 (245)
                      ..+.++..+.+++...|.                ....+.++|.++...+++          ++|+..|++|+++.|+  
T Consensus        17 ~feeA~~~~~~Ai~l~P~----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--   78 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--
Confidence            566777778888887765                244777788898888765          5999999999999999  


Q ss_pred             ChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          167 DPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       167 d~~~~~~a~~~lg~~~~~~g-----------~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                          ...+++++|.+|..+|           ++++|+.+|++|+++      +|...
T Consensus        79 ----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l------~P~~~  125 (158)
T 1zu2_A           79 ----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE------QPDNT  125 (158)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------CTTCH
T ss_pred             ----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh------CCCCH
Confidence                8999999999999885           899999999999999      67644

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.86  E-value=1.8e-08  Score=66.78  Aligned_cols=67  Identities=28%  Similarity=0.481  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++..+|.++...|++++|+.+|+++++.      .|....++.++|.+|...|++++|..+++++++...
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            5678899999999999999999999999998      677788999999999999999999999999998643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.85  E-value=2.7e-09  Score=80.43  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=77.0

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 025965          142 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  221 (245)
Q Consensus       142 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~  221 (245)
                      +...|++++|+..++++++..+.      ...++..+|.++...|++++|+.+|++++++      .|....++.++|.+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~   87 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQL------RGENAELYAALATV   87 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HCSCHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHH
Confidence            34568999999999999998776      6788999999999999999999999999998      66678899999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHHHhh
Q 025965          222 -YTELGDL--ERAARFYDKYISRLE  243 (245)
Q Consensus       222 -y~~~g~~--~~A~~~y~~al~~~~  243 (245)
                       |...|++  ++|..+++++++...
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p  112 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDS  112 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCC
Confidence             8899999  999999999998643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.84  E-value=1.2e-08  Score=70.22  Aligned_cols=67  Identities=21%  Similarity=0.312  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++.++|.++...|+|++|+..|++++++      .|..+.++.++|.+|..+|++++|+.+|+++++...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            3567889999999999999999999999998      777789999999999999999999999999987643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.84  E-value=3.8e-09  Score=86.30  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +...+.......+.+.++..|.+++...+.                ....+.++|.+|...|++++|+..+++++++.++
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~   70 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            334444555555777888888888887654                2447778999999999999999999999998776


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~  205 (245)
                            ...+++++|.++..+|++++|+.+|++++++....
T Consensus        71 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           71 ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence                  67899999999999999999999999999986643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.80  E-value=3.8e-08  Score=76.85  Aligned_cols=113  Identities=14%  Similarity=-0.015  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHhCCChHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ----DLEKAFTEFKAALELAQNVKDPIEE  171 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~l~~~~~d~~~~  171 (245)
                      .+.+.++..|.++.+.-.                  ..+.+.+|.+|.. +    ++++|+.+|+++.+.  .      .
T Consensus        32 ~~~~~A~~~~~~a~~~g~------------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g------~   84 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQGD------------------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G------S   84 (212)
T ss_dssp             TCHHHHHHHHHHHHHTTC------------------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T------C
T ss_pred             CCHHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C------C
Confidence            356677778888876321                  2377788999998 7    999999999999664  5      5


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYS--GSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       172 ~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~~d~~--~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                      ..+++++|.+|..    .+++++|+.+|+++++.      .+  ..+.+++++|.+|..    .+++++|..+|+++++.
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            7899999999998    99999999999999999      55  568899999999999    99999999999999876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.76  E-value=1.1e-07  Score=65.66  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ..++.+|..++..++|..|+.+|++|++..+.-.. ......++..+|.++.++|++++|+.++++++++      .|..
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l------~P~~   79 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------DPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Confidence            35778999999999999999999999998764321 2335678899999999999999999999999999      7877


Q ss_pred             HHHHHHHH
Q 025965          212 TEAYGAIA  219 (245)
Q Consensus       212 ~~a~~~la  219 (245)
                      ..+..|++
T Consensus        80 ~~~~~n~~   87 (104)
T 2v5f_A           80 QRANGNLK   87 (104)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhHH
Confidence            77888876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=4e-08  Score=80.99  Aligned_cols=96  Identities=16%  Similarity=0.101  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ++...|..+...|++++|...|++|++..+.      ....+...+..... .|++++|+..|+++++.      .|..+
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~------~p~~~  203 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIP  203 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcH
Confidence            4455566666666666666666666654432      12233333333322 57777777777777776      55667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .++.++|..+...|++++|...|++++..
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            78888888888888888888888888874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.75  E-value=1.2e-07  Score=77.18  Aligned_cols=101  Identities=10%  Similarity=-0.010  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-ST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~  212 (245)
                      ..+.+|.+++..+++++|+.+++++..    ..++.....+++++|.++...|++++|+.+|++++.-    ..+|. ..
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~  208 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACAR  208 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccH
Confidence            778899999999999999999986644    2344445678999999999999999999999998732    11154 77


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+.+++|.++..+|+.++|...|++++..-
T Consensus       209 da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          209 AIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            899999999999999999999999998753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.73  E-value=2.8e-08  Score=81.88  Aligned_cols=100  Identities=9%  Similarity=-0.012  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~-a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      ....+...|..+...|++++|...|++++++.+.      ... ++.++|..+.+.|++++|+..|+++++.      .|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~p  165 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRMIFKKARED------AR  165 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS------TT
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CC
Confidence            4445556666666666666666666666654332      122 5556666666666666666666666554      33


Q ss_pred             hHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHh
Q 025965          210 GSTEAYGAIADCYT-ELGDLERAARFYDKYISRL  242 (245)
Q Consensus       210 ~~~~a~~~la~~y~-~~g~~~~A~~~y~~al~~~  242 (245)
                      .....+...+.... ..|++++|...|+++++..
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~  199 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY  199 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33344444443322 2566666666666666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.67  E-value=2.8e-07  Score=63.65  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d-~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.-++.+|..++..|+|..|+.+|++|++....... ......++.++|.+|..+|++++|..+++++++.-.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            345788999999999999999999999998764321 345778999999999999999999999999997643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.64  E-value=1.4e-07  Score=63.82  Aligned_cols=62  Identities=24%  Similarity=0.271  Sum_probs=57.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~-a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+.|..+...|++++|+..|+++++.      .|.... ++.++|.+|...|++++|..+|+++++...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            56788999999999999999999998      777788 999999999999999999999999998754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.58  E-value=5.4e-07  Score=78.94  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHc
Q 025965          133 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  205 (245)
Q Consensus       133 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~  205 (245)
                      .+.+.+|.+|...|   ++++|+.+|+++.+.  .      ...+++++|.++..    .+++++|+.+|+++++.    
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----  396 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----  396 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----
Confidence            35677888888866   789999999998875  2      46788999999999    89999999999998763    


Q ss_pred             CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Q 025965          206 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL  242 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~~  242 (245)
                          +.+.+++++|.+|..    .+|+++|..+|+++++.-
T Consensus       397 ----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          397 ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence                236789999999998    899999999999998864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.47  E-value=3e-07  Score=62.71  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++..+|.++...|++++|+.+++++++.      .+....++.++|.+|...|++++|..+++++++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            345678999999999999999999999998      666778999999999999999999999999998643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.44  E-value=2.3e-06  Score=74.95  Aligned_cols=95  Identities=20%  Similarity=0.277  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 025965          131 ELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS  202 (245)
Q Consensus       131 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~  202 (245)
                      ...+.+.+|..|..    .+++++|+.+|+++.+.  .      ...+++++|.+|..    .+++++|+.+|+++.+. 
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  144 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-  144 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence            55667788999988    88999999999998763  2      45778889999988    88999999999998653 


Q ss_pred             HHcCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          203 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       203 ~~~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                             +.+.+++++|.+|..    .+++++|.++|+++++.
T Consensus       145 -------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          145 -------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence                   346788999999988    88999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.44  E-value=1e-06  Score=79.08  Aligned_cols=116  Identities=9%  Similarity=0.018  Sum_probs=101.1

Q ss_pred             HHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHhCCCh
Q 025965           99 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDP  168 (245)
Q Consensus        99 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~~~d~  168 (245)
                      +.++..+.+++...|.                ...++..++.+....|+          +++|++.++++++..|+    
T Consensus        46 eeal~~~~~~l~~nP~----------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK----  105 (567)
T 1dce_A           46 ESVLELTSQILGANPD----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----  105 (567)
T ss_dssp             HHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----
Confidence            5556677777776654                24577888888888888          99999999999999988    


Q ss_pred             HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHh
Q 025965          169 IEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRL  242 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g--~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~~  242 (245)
                        ...++.+.+.+....+  +++++++.+.+++++      ++....++.+.+.+....| .++++.++++++|+.-
T Consensus       106 --~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          106 --SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             --CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             --CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence              8889999999999999  779999999999999      8888999999999999999 9999999999988753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.41  E-value=1.2e-06  Score=78.58  Aligned_cols=119  Identities=8%  Similarity=-0.024  Sum_probs=101.8

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      .+.++..+.+++...|.                ...++..++++....+  ++++|++.+.+++++.++      ...++
T Consensus        89 ~~~eL~~~~~~l~~~pK----------------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW  146 (567)
T 1dce_A           89 VKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCW  146 (567)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccHH
Confidence            45566667777765554                3557888899999999  679999999999999988      88899


Q ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHH
Q 025965          176 RGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYIS  240 (245)
Q Consensus       176 ~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~--------------g~~~~A~~~y~~al~  240 (245)
                      .+.|.+....| .++++++++.++++.      ++....++++.|.++..+              +.+++|.+++++|+.
T Consensus       147 ~~R~~~l~~l~~~~~~el~~~~~~I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          147 DYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHH------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence            99999999999 999999999999988      888899999999999885              568999999999998


Q ss_pred             Hhhc
Q 025965          241 RLES  244 (245)
Q Consensus       241 ~~~~  244 (245)
                      ...+
T Consensus       221 ~~P~  224 (567)
T 1dce_A          221 TDPN  224 (567)
T ss_dssp             HCSS
T ss_pred             hCCC
Confidence            6543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.33  E-value=2.3e-05  Score=58.06  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ...+.......+..|.|+.|+.....++.+.++..+   +......+..+|.+++..++|.+|..+|++||+..+.....
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            445556677888899999999999999999876555   66788899999999999999999999999999887743211


Q ss_pred             -------------------chHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          209 -------------------SGSTEAYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       209 -------------------~~~~~a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                                         +...+..+.+|.||.++|++++|+...+.
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                               22346788999999999999999987653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.32  E-value=2.1e-06  Score=75.97  Aligned_cols=98  Identities=15%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----------------------------
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----------------------------  184 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----------------------------  184 (245)
                      ..+...|..+...|++++|...|++++++.+.  ++   ..++.++|..+.+                            
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--Cc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence            35556677777778888888888877765332  11   1234444444444                            


Q ss_pred             -------cCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          185 -------QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       185 -------~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                             .|++++|...|+++++.      .|..+.++.+++..+...|+.++|...|++++..
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHH------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence                   45555555555555544      3444555566666666666666666666666553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.31  E-value=1.9e-06  Score=74.99  Aligned_cols=89  Identities=12%  Similarity=0.060  Sum_probs=54.7

Q ss_pred             HHHHHHHH-H--HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHc
Q 025965          134 SRLKTGKN-F--LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQISERE  205 (245)
Q Consensus       134 ~~~~~g~~-~--~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-----~~~~Ai~~~~~al~~~~~~  205 (245)
                      +.+.+|.+ +  ...+++++|+.+|+++.+.  .      ...+.+++|.+|. .|     ++++|+.+|+++.      
T Consensus       250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa------  314 (452)
T 3e4b_A          250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV------  314 (452)
T ss_dssp             HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT------
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh------
Confidence            44555665 3  3456667777777666532  1      3556667776665 44     6777777777664      


Q ss_pred             CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 025965          206 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYIS  240 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~  240 (245)
                         ++.+.+++++|.+|..    ..|+++|..+|+++.+
T Consensus       315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence               2235667777777665    3377777777777664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.27  E-value=1.2e-06  Score=71.37  Aligned_cols=95  Identities=11%  Similarity=-0.057  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ..+..+..+...|+|++|.+.+...+...+.      .. +.+.+|.++.+.++|++|+.+++++...    .+......
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~  172 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSE------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGA  172 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHH
Confidence            4445588999999999999999887653333      44 8899999999999999999999876443    11112356


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      +++++|.++..+|++++|..+|++++
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            89999999999999999999999997

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.26  E-value=8.9e-06  Score=67.21  Aligned_cols=117  Identities=5%  Similarity=-0.107  Sum_probs=100.1

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      .+.++..+.+++...|.                ...+.+..|.+....+  ++++++..+.+++...|+      ...+.
T Consensus        49 s~~aL~~t~~~L~~nP~----------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW  106 (306)
T 3dra_A           49 SERALHITELGINELAS----------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIW  106 (306)
T ss_dssp             SHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHH
T ss_pred             CHHHHHHHHHHHHHCcH----------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHH
Confidence            34566667777776654                2457888899999999  999999999999999888      67778


Q ss_pred             HHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHh
Q 025965          176 RGLGASL----QRQ---GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--RAARFYDKYISRL  242 (245)
Q Consensus       176 ~~lg~~~----~~~---g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~--~A~~~y~~al~~~  242 (245)
                      +..+.+.    ...   +++++++..+.++++.      +|....++++.+.+....|.++  ++.++++++++.-
T Consensus       107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A          107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            8888888    666   8999999999999998      8888999999999999999998  9999999998753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.19  E-value=3e-06  Score=74.88  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          133 LSRLKTGKNFLR-------NQDLE-------KAFTEFKAALE-LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  197 (245)
Q Consensus       133 ~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~  197 (245)
                      ..++..|..+..       .|+++       +|...|++|++ +.|+      ....+..+|..+...|++++|...|++
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------~~~l~~~~~~~~~~~g~~~~A~~~~~~  346 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NMLLYFAYADYEESRMKYEKVHSIYNR  346 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            356666777775       79987       89999999986 5555      577888999999999999999999999


Q ss_pred             HHHHHHHcCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          198 VLQISEREGEYSGS-TEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       198 al~~~~~~~d~~~~-~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ++++      .|.. ..++.+.|..+...|++++|...|+++++.
T Consensus       347 al~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          347 LLAI------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             HHHS------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhCc------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9987      4443 357888888888888888888888888753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.19  E-value=2.4e-05  Score=75.72  Aligned_cols=96  Identities=13%  Similarity=0.170  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER--------  204 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~--------  204 (245)
                      ..++.+|.++...|++++|+..|.+|     +      ....+..+|.++.+.|+|++|+++|..|.+..+.        
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----d------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----D------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc-----C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence            36778899999999999999999886     2      4667788999999999999999999887644311        


Q ss_pred             -----cC---------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          205 -----EG---------EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       205 -----~~---------d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                           .+         +.+.. ..+.++|..+...|+|++|..+|+++-.
T Consensus      1175 faYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~n 1223 (1630)
T 1xi4_A         1175 FALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSN 1223 (1630)
T ss_pred             HHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhH
Confidence                 00         11222 3466799999999999999999988743

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.19  E-value=9e-06  Score=59.75  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g---~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ...+.+++|+++.+.+   +.++++..+++.++.     +.| ...++++++|..|.++|+|++|..+++++++.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3455666666666666   455667666666654     113 45666677777777777777777777766664

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.19  E-value=3.5e-06  Score=73.31  Aligned_cols=59  Identities=7%  Similarity=0.102  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----GKYREAIKYHSMV  198 (245)
Q Consensus       134 ~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~----g~~~~Ai~~~~~a  198 (245)
                      +.+.+|.+|...|   ++++|+.+|+++.+..+.      .+..++++|.+|...    +++++|+.+|+++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a  243 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLGTPDEKTAQALLEKI  243 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            5556677777777   777777777776654333      233334444444333    3444555544444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.19  E-value=8e-06  Score=55.11  Aligned_cols=65  Identities=14%  Similarity=-0.033  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          172 KKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~---~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ...+..+|.+++..++   .++|...+++++++      +|....+...+|..+...|+|++|+.+|+++++..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4567788888876666   79999999999999      89999999999999999999999999999988643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.08  E-value=5.3e-06  Score=60.11  Aligned_cols=78  Identities=26%  Similarity=0.335  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-
Q 025965          146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  224 (245)
Q Consensus       146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~-  224 (245)
                      +++++|+.+|+++.+..    +    ..+.  +|.+|...+..++|+.+|+++.+.        +.+.+++++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~g----~----~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN----E----MFGC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT----C----TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcCC----C----Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcC
Confidence            47899999999997643    2    2223  999999999999999999999754        346899999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHHH
Q 025965          225 ---LGDLERAARFYDKYISR  241 (245)
Q Consensus       225 ---~g~~~~A~~~y~~al~~  241 (245)
                         .+|+++|.++|+++.+.
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHcC
Confidence               89999999999999864

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.07  E-value=8.6e-05  Score=61.89  Aligned_cols=101  Identities=6%  Similarity=-0.069  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCc
Q 025965          132 LLSRLKTGKNFLRNQD--LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~--~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      ..++...+.+....++  +++++..+.++++..+.      ...+..+.+.+....|. ++++++++.++++.      +
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~------~  175 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR------N  175 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH------C
Confidence            4477888999999884  89999999999999888      88899999999999999 69999999999998      8


Q ss_pred             chHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHhhc
Q 025965          209 SGSTEAYGAIADCYTEL--------------GDLERAARFYDKYISRLES  244 (245)
Q Consensus       209 ~~~~~a~~~la~~y~~~--------------g~~~~A~~~y~~al~~~~~  244 (245)
                      |.+..++++.+.+....              +.++++++++++++....+
T Consensus       176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~  225 (331)
T 3dss_A          176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN  225 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence            98899999999999887              4589999999999987654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.06  E-value=3.7e-05  Score=51.80  Aligned_cols=62  Identities=13%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       134 ~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .+...|.+++..++   .++|...+++++++.|+      ...+...+|..++..|+|++|+.+++++++.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45556777766665   79999999999999999      8999999999999999999999999998876

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.05  E-value=2.4e-05  Score=64.62  Aligned_cols=98  Identities=8%  Similarity=-0.036  Sum_probs=85.8

Q ss_pred             HHHHHHHHH----HHC---CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q 025965          134 SRLKTGKNF----LRN---QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--EAIKYHSMVLQISER  204 (245)
Q Consensus       134 ~~~~~g~~~----~~~---g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~--~Ai~~~~~al~~~~~  204 (245)
                      ++..++.+.    ...   +++++++..+.++++..++      ...+..+.+.+....|+++  ++++++.++++.   
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---  175 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---  175 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence            566667777    666   7899999999999998888      7888999999999999998  999999999988   


Q ss_pred             cCCcchHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHhh
Q 025965          205 EGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISRLE  243 (245)
Q Consensus       205 ~~d~~~~~~a~~~la~~y~~~g~------~~~A~~~y~~al~~~~  243 (245)
                         ++.+..++++.+.+....|.      +++++++++++|..-.
T Consensus       176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p  217 (306)
T 3dra_A          176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP  217 (306)
T ss_dssp             ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS
T ss_pred             ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC
Confidence               88888999999999998887      9999999999987643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.02  E-value=0.00019  Score=59.77  Aligned_cols=99  Identities=8%  Similarity=-0.006  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVL  199 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g--~~~~Ai~~~~~al  199 (245)
                      ..++...+.+....++          +++++..+..++...|+      ...+.++.+.+....+  ++++++..+.+++
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l  137 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFL  137 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence            3456666777666554          68899999999998887      7888999999999999  4999999999999


Q ss_pred             HHHHHcCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Q 025965          200 QISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISRL  242 (245)
Q Consensus       200 ~~~~~~~d~~~~~~a~~~la~~y~~~g~-~~~A~~~y~~al~~~  242 (245)
                      +.      +|.+..++.+.+.+....|. ++++.++++++++.-
T Consensus       138 ~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~  175 (331)
T 3dss_A          138 EA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  175 (331)
T ss_dssp             HH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             Hh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence            99      88889999999999999999 699999999999854

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.93  E-value=0.00013  Score=70.77  Aligned_cols=93  Identities=17%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-------------CChHH--------HHHHHHHHHHHHHHcCCHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------------KDPIE--------EKKAARGLGASLQRQGKYREAI  192 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------------~d~~~--------~~~a~~~lg~~~~~~g~~~~Ai  192 (245)
                      .+...|..+...|+|++|++++..|++..+..             +....        ....+.++|..+...|+|++|+
T Consensus      1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A         1136 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            55668999999999999999998877544221             11111        1123567999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          193 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       193 ~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .+|.++              ..|..+|.+|..+|++++|++.+++|.+
T Consensus      1216 ~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1216 LLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            999985              3678899999999999999999998854

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.90  E-value=0.00012  Score=53.83  Aligned_cols=76  Identities=18%  Similarity=0.200  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          133 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       133 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      .+.+..|+++...+   +.++++..++..++..    ++.....+++++|..+++.|+|++|..++++++++      +|
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i------eP  102 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EP  102 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CC
Confidence            36777799999888   6669999999988865    12237889999999999999999999999999999      78


Q ss_pred             hHHHHHHHH
Q 025965          210 GSTEAYGAI  218 (245)
Q Consensus       210 ~~~~a~~~l  218 (245)
                      +...+....
T Consensus       103 ~n~QA~~Lk  111 (152)
T 1pc2_A          103 QNNQAKELE  111 (152)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            666655443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.88  E-value=3.3e-05  Score=64.81  Aligned_cols=117  Identities=9%  Similarity=-0.010  Sum_probs=99.5

Q ss_pred             HHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           98 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        98 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      .+.++..+.+++...|.                ...+...++.+....| ++++++..+.+++...++      ...+.+
T Consensus        70 se~AL~lt~~~L~~nP~----------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~  127 (349)
T 3q7a_A           70 SERALELTEIIVRMNPA----------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWH  127 (349)
T ss_dssp             SHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHH
T ss_pred             CHHHHHHHHHHHHhCch----------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHH
Confidence            34566667777776654                2447888899999999 599999999999998888      788899


Q ss_pred             HHHHHHHHc-C-CHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHh
Q 025965          177 GLGASLQRQ-G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--------RAARFYDKYISRL  242 (245)
Q Consensus       177 ~lg~~~~~~-g-~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~--------~A~~~y~~al~~~  242 (245)
                      ..+.+.... + +++++++.+.++++.      +|.+..++...+.+....|.++        +++++++++++.-
T Consensus       128 hR~wlL~~l~~~~~~~EL~~~~k~L~~------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d  197 (349)
T 3q7a_A          128 HRLLLLDRISPQDPVSEIEYIHGSLLP------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD  197 (349)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHTSS------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence            999999888 8 999999999999887      8888899999999999988887        9999999998753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.84  E-value=0.00074  Score=56.82  Aligned_cols=64  Identities=16%  Similarity=0.024  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+.++..+|..+...|++++|+.++++|+.+      ++. ..+|..+|.++...|++++|.+.|++|+..
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            5667788888888889999999999999999      454 567888999999999999999999999976

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.83  E-value=0.0022  Score=54.58  Aligned_cols=110  Identities=5%  Similarity=-0.101  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcchHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~-~d~~~~~  212 (245)
                      ....+|..|+..|+|.+|...+.+.++..+...|.....+.+..-...|...+++.++-..+.+|....... .+....+
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            344779999999999999999999999988888888899999999999999999999999999998887665 3333456


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYT-ELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~-~~g~~~~A~~~y~~al~~~~  243 (245)
                      .....-|..+. ..++|..|..+|-++.+.+.
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            66666788888 89999999999988876553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.79  E-value=9.5e-05  Score=60.05  Aligned_cols=85  Identities=14%  Similarity=0.052  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHHH
Q 025965          148 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----GKYREAIKYHSMVLQISEREGEYSGS-TEAYGAIADC  221 (245)
Q Consensus       148 ~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~-----g~~~~Ai~~~~~al~~~~~~~d~~~~-~~a~~~la~~  221 (245)
                      ...|....++|+++.|+    .....++..+|..|...     |+.++|..+|++|+++      .|+. ..+++..|..
T Consensus       179 l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------nP~~~id~~v~YA~~  248 (301)
T 3u64_A          179 VHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------CSAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------CCTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------CCCCCchHHHHHHHH
Confidence            45677778888887765    33466899999999994     9999999999999999      7864 8899999999


Q ss_pred             HHH-cCCHHHHHHHHHHHHHHh
Q 025965          222 YTE-LGDLERAARFYDKYISRL  242 (245)
Q Consensus       222 y~~-~g~~~~A~~~y~~al~~~  242 (245)
                      +.. .|+++.|..+++++++.-
T Consensus       249 l~~~~gd~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          249 LCIPLNNRAGFDEALDRALAID  270 (301)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHCC
T ss_pred             HHHhcCCHHHHHHHHHHHHcCC
Confidence            887 599999999999998753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.75  E-value=5e-05  Score=63.71  Aligned_cols=100  Identities=10%  Similarity=-0.041  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRN-Q-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--------EAIKYHSMVLQI  201 (245)
Q Consensus       132 ~~~~~~~g~~~~~~-g-~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~--------~Ai~~~~~al~~  201 (245)
                      ..++..++.+.... + +++++++.+.++++..++      ...+....+.+....|.++        ++++++.++++.
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            44677788888887 7 899999999999988777      7788888888888888888        999999999998


Q ss_pred             HHHcCCcchHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHhh
Q 025965          202 SEREGEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISRLE  243 (245)
Q Consensus       202 ~~~~~d~~~~~~a~~~la~~y~~~g~-------~~~A~~~y~~al~~~~  243 (245)
                            ++.+..++++.+.+....+.       ++++++++++++..-.
T Consensus       197 ------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P  239 (349)
T 3q7a_A          197 ------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP  239 (349)
T ss_dssp             ------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             ------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence                  88889999999999999987       7999999999998654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.67  E-value=0.0008  Score=49.84  Aligned_cols=89  Identities=10%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHH-------------------HHHHHHHHHHHHHHcCC
Q 025965          127 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-------------------EKKAARGLGASLQRQGK  187 (245)
Q Consensus       127 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~-------------------~~~a~~~lg~~~~~~g~  187 (245)
                      ....++.++...|..++..++|..|...|++|+.+.+.+.....                   ..+..+.++.|+...++
T Consensus        58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~  137 (167)
T 3ffl_A           58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ  137 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence            45567778888999999999999999999999998885432221                   23677899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 025965          188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  222 (245)
Q Consensus       188 ~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y  222 (245)
                      +++|+..++..   .    .....+.....||.+|
T Consensus       138 ~~~Ai~~Le~I---p----~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          138 DKDAIAILDGI---P----SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHHHTS---C----GGGCCHHHHHHHHHHC
T ss_pred             HHHHHHHHhcC---C----chhcCHHHHHHHHHHh
Confidence            99999987652   1    1223445556667665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.62  E-value=0.00084  Score=55.26  Aligned_cols=122  Identities=10%  Similarity=-0.007  Sum_probs=78.7

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..+.+.+...+.              .....+....+.++..+|+++.|...+++..+..++.-..........
T Consensus       115 ~~eeAL~~l~~~i~~~~~--------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L  180 (310)
T 3mv2_B          115 DLDKSLETCVEGIDNDEA--------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL  180 (310)
T ss_dssp             CHHHHHHHHHHHHTSSCS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCC--------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence            556666666655543320              123445666799999999999999999988665440000000222233


Q ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          177 GLGASLQRQG--KYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       177 ~lg~~~~~~g--~~~~Ai~~~~~al~~~~~~~d~~~--~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .-|++....|  ++.+|+..|++..+.      .|.  ....+++   ++..+|++++|...++..++.
T Consensus       181 aea~v~l~~g~~~~q~A~~~f~El~~~------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          181 AESYIKFATNKETATSNFYYYEELSQT------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHHHHHHTCSTTTHHHHHHHHHHTT------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHh------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence            3344466666  999999999996543      333  3344454   899999999999999876654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.57  E-value=0.0005  Score=56.61  Aligned_cols=99  Identities=7%  Similarity=-0.032  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch---
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG---  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~---  210 (245)
                      ....+|.++...|++++|+..+.+.+...+    .....++..-++.++..+|+.+.|.+.+++..+.      +++   
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~------~~d~~~  171 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA------IEDTVS  171 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------Cccccc
Confidence            345789999999999999999999866442    1126777888899999999999999999997666      441   


Q ss_pred             -HHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHHh
Q 025965          211 -STEAYGAIADC--YTELG--DLERAARFYDKYISRL  242 (245)
Q Consensus       211 -~~~a~~~la~~--y~~~g--~~~~A~~~y~~al~~~  242 (245)
                       .-....+++.+  ....|  ++++|...|++..+.+
T Consensus       172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~  208 (310)
T 3mv2_B          172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF  208 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence             22334444444  55556  9999999999987654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.54  E-value=7.7e-05  Score=64.38  Aligned_cols=93  Identities=11%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-------H
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS--E-------R  204 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~--~-------~  204 (245)
                      .+..+|..++..|+|++|..+|.++              ..+..+|.++.++|+|++|++.++++....  +       .
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            7778899999999999999999875              356788999999999999999999883220  0       0


Q ss_pred             cC---------Cc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          205 EG---------EY-SGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       205 ~~---------d~-~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .+         .. ...++-...+..+|.+.|.+++|+.++++++.
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~  235 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG  235 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence            00         00 00111122355789999999999999998864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.45  E-value=5.2e-05  Score=65.45  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      .++.++|..+...|+|++|..+|.++              ..+..+|.++..+|++++|.+.|.++.
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~  175 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN  175 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence            37889999999999999999999875              357789999999999999999999884

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.23  E-value=0.00028  Score=57.29  Aligned_cols=74  Identities=15%  Similarity=0.005  Sum_probs=63.1

Q ss_pred             ccccCChHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHHHHHH-cCCHHHHHHH
Q 025965          122 EVIVDPKKEELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQR-QGKYREAIKY  194 (245)
Q Consensus       122 ~~~~~~~~~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~d~~~~-~~a~~~lg~~~~~-~g~~~~Ai~~  194 (245)
                      .+..+|+-....++..+|..|...     |+.++|..+|++|+++.|+      . ...++..|..+.. +|++++|..+
T Consensus       189 AleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~------~~id~~v~YA~~l~~~~gd~~~a~~~  262 (301)
T 3u64_A          189 ACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA------HDPDHHITYADALCIPLNNRAGFDEA  262 (301)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT------TCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC------CCchHHHHHHHHHHHhcCCHHHHHHH
Confidence            344567766667778889999996     9999999999999999986      4 6778888998888 5999999999


Q ss_pred             HHHHHHH
Q 025965          195 HSMVLQI  201 (245)
Q Consensus       195 ~~~al~~  201 (245)
                      +++++..
T Consensus       263 L~kAL~a  269 (301)
T 3u64_A          263 LDRALAI  269 (301)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHcC
Confidence            9999987

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.15  E-value=0.0014  Score=55.20  Aligned_cols=105  Identities=11%  Similarity=0.018  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHH
Q 025965          131 ELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---G-KYREAIKYHSMVLQISE  203 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~---g-~~~~Ai~~~~~al~~~~  203 (245)
                      .++.++..|..+...++   ..+|+..|++|+++.|+      .+.++..++.++...   + ..........++++...
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            46667777888776655   47899999999999998      677777666666421   1 11233344445555333


Q ss_pred             HcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          204 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       204 ~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .....+..+.++..+|..+...|++++|..++++|+..
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L  306 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL  306 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            33445677888999999999899999999999999986

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.03  E-value=0.0032  Score=44.53  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYRE---AIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~---Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+.+++|+++.+..+..+   +|..++..++-     +.| ..-++++.+|..+.++|+|++|..+.+..++.
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4556667777766666555   55555554332     113 45667777777777777777777777777664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.032  Score=48.26  Aligned_cols=113  Identities=10%  Similarity=0.002  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      ..+.....++.+|...|++.+|.........-.....+.....+.+......+...+||.+|...++++..........+
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            34556677899999999999999998886654444556667778888888899999999999999999865444443333


Q ss_pred             -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          210 -GSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       210 -~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                       .....+...|..+...++|.+|..+|..+.+.+
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence             456677888999999999999999999988754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.006  Score=52.61  Aligned_cols=106  Identities=9%  Similarity=0.048  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +...+|..|...|++++|.+.|.++.......+.   ....+.+.-.++...+|+..+..+..++-.+....+|......
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            4556799999999999999999998886655443   4455666667788889999999999999888777776555556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ....-|..+...++|..|..+|-.++..+
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            66667888899999999999998876654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.91  E-value=0.065  Score=45.49  Aligned_cols=120  Identities=15%  Similarity=0.101  Sum_probs=89.2

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-CChHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAA  175 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~~~~a~  175 (245)
                      +...++..+.+.....+.          .++...-...+......|...+++.++.+.+.+|......+ .++...+...
T Consensus       114 ~y~~a~~~i~~l~~~~~~----------~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          114 LYTEALALGAQLLRELKK----------LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             CHHHHHHHHHHHHHHHTT----------SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhc----------cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            556665666655555544          24556666777778999999999999999999999999887 7888888888


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 025965          176 RGLGASLQ-RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  227 (245)
Q Consensus       176 ~~lg~~~~-~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~  227 (245)
                      ..-|..+. ..++|.+|-.+|-++.+-+...++ +....+...++.+-...++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~-~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDS-VKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhccccccc-HHHHHHHHHHHHHHHHcCC
Confidence            88999999 899999999999999877664442 3333344445555444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.56  E-value=0.015  Score=41.00  Aligned_cols=73  Identities=16%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          134 SRLKTGKNFLRNQDLEK---AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~---A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      +.+..|+++....+...   ++..++..+.-    .++.....+++.+|..+++.|+|++|..+++..|++      .|+
T Consensus        37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~------eP~  106 (126)
T 1nzn_A           37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EPQ  106 (126)
T ss_dssp             HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------CCC
Confidence            56667888887777665   66666664432    224467889999999999999999999999999999      776


Q ss_pred             HHHHHH
Q 025965          211 STEAYG  216 (245)
Q Consensus       211 ~~~a~~  216 (245)
                      +..+..
T Consensus       107 n~QA~~  112 (126)
T 1nzn_A          107 NNQAKE  112 (126)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            555543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.88  E-value=0.023  Score=49.87  Aligned_cols=79  Identities=11%  Similarity=0.090  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .+..+|........++.|..+|.+|..+.|.      .+..++.+|.+....|+.-+|+-+|.+++-.      ....+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~~------~~Pf~~  221 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV------KFPFPA  221 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS------SBCCHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHhc------CCCChh
Confidence            4557899999999999999999999999999      8888999999999999999999999998754      333455


Q ss_pred             HHHHHHHHHHH
Q 025965          214 AYGAIADCYTE  224 (245)
Q Consensus       214 a~~~la~~y~~  224 (245)
                      +..|+...+..
T Consensus       222 a~~nL~~~f~~  232 (497)
T 1ya0_A          222 ASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            56666655543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.73  E-value=0.12  Score=36.76  Aligned_cols=64  Identities=16%  Similarity=0.147  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          173 KAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       173 ~a~~~lg~~~~~~g~~---~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+..++++++.+..+.   .++|..++..++.     +....-++++.+|..+.++|+|++|..+.+..++.
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4455555555555443   2455555554432     12245566666777777777777777766666553

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.64  E-value=0.12  Score=37.10  Aligned_cols=65  Identities=14%  Similarity=0.111  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYR---EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~---~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+.+++++++.+..+..   ++|..++..++-     +....-++++.+|..+.++|+|++|..+.+..++.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            444555566665555443   345555554332     11135556666666677777777777666666653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.60  E-value=0.46  Score=40.10  Aligned_cols=107  Identities=13%  Similarity=0.084  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----CCCh-H----------HHHHHHHHHHHHHHHcCCHHHHHHH
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----VKDP-I----------EEKKAARGLGASLQRQGKYREAIKY  194 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----~~d~-~----------~~~~a~~~lg~~~~~~g~~~~Ai~~  194 (245)
                      ........|......|+.+.|.+.+.+|+.++..     ..+. .          ....+...++..+...|++++|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4444555566666789999999999999987642     1111 1          1223455778888999999999999


Q ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          195 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       195 ~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +..++..      +|..-.++..+-.++...|+..+|...|+++-+.+.
T Consensus       194 l~~~~~~------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~  236 (388)
T 2ff4_A          194 LEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  236 (388)
T ss_dssp             HHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999888      787777899999999999999999999999887654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.32  E-value=0.19  Score=35.62  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          134 SRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~---~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      +.++.|++.....+.   .+++..++..+...     +.....+++.+|..+++.|+|++|..+.+..++.      .|+
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~------eP~  110 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------ERN  110 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------CTT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCC
Confidence            566667777766654   35666776655432     3336789999999999999999999999999988      776


Q ss_pred             HHHHHH
Q 025965          211 STEAYG  216 (245)
Q Consensus       211 ~~~a~~  216 (245)
                      +..+..
T Consensus       111 N~QA~~  116 (134)
T 3o48_A          111 NKQVGA  116 (134)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.96  E-value=1.6  Score=37.57  Aligned_cols=84  Identities=14%  Similarity=0.032  Sum_probs=69.4

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      .+.......++.....|...+|+.+|...++++.... ....++......+...|..+...++|.+|-.+|..+.+.+..
T Consensus       171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            4566677788888999999999999999999987544 444566667788888999999999999999999999988776


Q ss_pred             cCCcc
Q 025965          205 EGEYS  209 (245)
Q Consensus       205 ~~d~~  209 (245)
                      .+|..
T Consensus       251 ~~d~~  255 (445)
T 4b4t_P          251 KSDEA  255 (445)
T ss_dssp             HSCHH
T ss_pred             cCCHH
Confidence            66543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.95  E-value=0.22  Score=35.76  Aligned_cols=71  Identities=11%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          134 SRLKTGKNFLRNQDLE---KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~---~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      +.++.|++.....+.+   +++..++..+..     ++.....+++.++..+++.|+|++|..+.+..|++      .|+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~------eP~  109 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------ERN  109 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT------CCC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------CCC
Confidence            5666778877776655   566666665542     12236788999999999999999999999999998      776


Q ss_pred             HHHHH
Q 025965          211 STEAY  215 (245)
Q Consensus       211 ~~~a~  215 (245)
                      +..+.
T Consensus       110 n~QA~  114 (144)
T 1y8m_A          110 NKQVG  114 (144)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            55543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.94  E-value=0.088  Score=46.15  Aligned_cols=63  Identities=17%  Similarity=0.222  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      ..++..+|...+-...++.|..+|.+|+.+      .|.....|+.+|.++...|+.-+|..+|-+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            456788999999999999999999999999      888889999999999999999999999999875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.67  E-value=0.11  Score=47.31  Aligned_cols=82  Identities=11%  Similarity=0.021  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 025965          149 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI-KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  227 (245)
Q Consensus       149 ~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai-~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~  227 (245)
                      +.....|++++...+.      ....+...+......|+.++|. ..|.+|+..      .|.....+...+......|+
T Consensus       326 ~Rv~~~Ye~aL~~~p~------~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~------~P~s~~Lwl~~a~~ee~~~~  393 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCF------APEIWFNMANYQGEKNTDSTVITKYLKLGQQC------IPNSAVLAFSLSEQYELNTK  393 (679)
T ss_dssp             HHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCC
Confidence            3455679999998887      6777888888888999999997 999999887      56556678888999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 025965          228 LERAARFYDKYISRL  242 (245)
Q Consensus       228 ~~~A~~~y~~al~~~  242 (245)
                      +++|.+.|+++++.+
T Consensus       394 ~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          394 IPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999863

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.36  Score=44.47  Aligned_cols=58  Identities=17%  Similarity=0.163  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          174 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       174 a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                      .+.--+..+...|+|+-|++..++|...      .|....+++.|+.+|..+||++.|.-..+.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~------aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTEL------ALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhc------CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            4455567778899999999999999999      888899999999999999999999876654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.03  E-value=0.46  Score=41.62  Aligned_cols=97  Identities=9%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      .+..+-..|...|+.++|...+++..+.  .+..   ....++.+=..+.+.|+.++|.+.|++-.    +.|-.|+ ..
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~G~~Pd-~~  176 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQP---RLRSYGPALFGFCRKGDADKAYEVDAHMV----ESEVVPE-EP  176 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTCCCC-HH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---ccceehHHHHHHHHCCCHHHHHHHHHHHH----hcCCCCC-HH
Confidence            4444566778889999999999886542  1111   24456777778899999999999998853    2344454 45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .|..+-.+|.+.|+.++|.+.+++.-+
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            788899999999999999999988654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.95  E-value=0.48  Score=43.20  Aligned_cols=96  Identities=13%  Similarity=0.028  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      +...+....+.|+.+.|...|.+|++..+...     ...+...+......+ +++.|...|+++++.+      +....
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~------p~~~~  505 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYF------ATDGE  505 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH------TTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCchH
Confidence            33334444455666666666666665422111     112222333333333 3666666666666652      22223


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      .+...+......|+.++|...|++++..
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            3334444455556666666666666543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.21  E-value=0.24  Score=42.51  Aligned_cols=70  Identities=17%  Similarity=0.019  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...+...+|..+.+.|++++|.+.|.+.......   .....+.+..+-+++...+|+..+..+++++-....
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~  199 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE  199 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            4557888999999999999999999998776543   234567888899999999999999999999977654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.58  E-value=5.3  Score=36.25  Aligned_cols=98  Identities=10%  Similarity=-0.032  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHhCCChHHHHHH---------HHHHHHHHHHcCCHHHHHHHHH--
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAA------LELAQNVKDPIEEKKA---------ARGLGASLQRQGKYREAIKYHS--  196 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~a------l~l~~~~~d~~~~~~a---------~~~lg~~~~~~g~~~~Ai~~~~--  196 (245)
                      .+..+|..+...++++.|...|.++      ..++...++.......         +.....++...|++++|++.|.  
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence            5567899999999999999988764      3344444444432222         1123345666888888888775  


Q ss_pred             ----HHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCCHHHH
Q 025965          197 ----MVLQISEREGEYS-GSTEAYGAIADCYTELGDLERA  231 (245)
Q Consensus       197 ----~al~~~~~~~d~~-~~~~a~~~la~~y~~~g~~~~A  231 (245)
                          +|+.++++.+... .........+.-....|+.+.|
T Consensus       763 ~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          763 QRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             TCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             CChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence                4677777665422 1445555666666667765433

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.57  E-value=3.3  Score=30.86  Aligned_cols=93  Identities=13%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH----------c
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL--QISER----------E  205 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al--~~~~~----------~  205 (245)
                      ++...+..|.|..+.-...+       ++    .+.+.+.-..++...++|..|+...++.+  ++-+.          .
T Consensus        39 ~~I~LyyngEY~R~Lf~L~~-------lN----T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff  107 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLHK-------LN----TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF  107 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-------CC----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred             hhhhhhhcchHhHHHHHHHh-------cc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence            47778888998887765543       11    23445556778999999999999999987  22100          0


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          206 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       206 ~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      -|..+.---+..+|......|+.++|+.+|......
T Consensus       108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            111223334667899999999999999999887653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.79  E-value=0.21  Score=43.79  Aligned_cols=110  Identities=9%  Similarity=-0.040  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHH----------HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFT----------EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~----------~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +..+++.+..+-..|+......          .+..+++-+.--.|....+..++-+=..|...+.|++|..+..++. .
T Consensus       181 ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-f  259 (523)
T 4b4t_S          181 AKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-Y  259 (523)
T ss_dssp             ----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-S
T ss_pred             HHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-C
Confidence            3455555666666666554321          2233333322234555666777778888999999999999999873 2


Q ss_pred             HHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       202 ~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+....+...+..++.+|+++.-.++|.+|.+++..|+...
T Consensus       260 P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          260 PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            22222233456778889999999999999999999988654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.39  E-value=1.7  Score=31.59  Aligned_cols=93  Identities=13%  Similarity=0.064  Sum_probs=67.2

Q ss_pred             HHCCCH------HHHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          143 LRNQDL------EKAFTEFKAALELAQNVKDPIE--EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       143 ~~~g~~------~~A~~~~~~al~l~~~~~d~~~--~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      -..|++      ++-.+.|++|+...|-.+....  ....+...+.. ...+|.++|-..|+.++++      ....+..
T Consensus        24 E~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------hKkFAKi   96 (161)
T 4h7y_A           24 EKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------CKKFAFV   96 (161)
T ss_dssp             HHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------CTTBHHH
T ss_pred             HHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------hHHHHHH
Confidence            333777      7778889999886654332111  23334445544 5668999999999999987      2223777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +...|.--..+|+.++|.+.+.+|+...
T Consensus        97 wi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           97 HISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            8888888889999999999999998754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.28  E-value=2.9  Score=36.30  Aligned_cols=102  Identities=7%  Similarity=-0.140  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChH----------------------------------HHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----------------------------------EEKKAARGLG  179 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~----------------------------------~~~~a~~~lg  179 (245)
                      .++..+......|+.++|...|++|+.. |....-.                                  .....+...+
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~  293 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL  293 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence            4555677788899999999999999987 5422100                                  0011222333


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhh
Q 025965          180 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  243 (245)
Q Consensus       180 ~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g-~~~~A~~~y~~al~~~~  243 (245)
                      ....+.++.+.|...|.+| +.      .+.....+...|..-...+ +.+.|...|+.+++.+.
T Consensus       294 ~~~~r~~~~~~AR~i~~~A-~~------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          294 NYVLKKRGLELFRKLFIEL-GN------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHCHHHHHHHHHHH-TT------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHcCCHHHHHHHHHHh-hC------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            3344566677777777776 21      1112344544555544444 68999999998887553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.27  E-value=0.81  Score=42.14  Aligned_cols=59  Identities=17%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      .+...+......|+|+.|+...++|...+|.      .-.++..|+.+|..+|+|+.|+-.++-.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3444577777899999999999999999998      8899999999999999999999877653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.78  E-value=1.8  Score=36.37  Aligned_cols=72  Identities=11%  Similarity=-0.015  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCcch
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSG  210 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~-~~~d~~~  210 (245)
                      .+...++..+...|++++|+....+++...|-      ...++..+-.++...|+..+|+..|++.-+... +.|-+|+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~------~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            34445677888999999999999999888775      556777888899999999999999999877554 4566554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.85  E-value=8.5  Score=31.37  Aligned_cols=100  Identities=12%  Similarity=0.003  Sum_probs=67.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCC-cchHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREGE-YSGSTE  213 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~-~~Ai~~~~~al~~~~~~~d-~~~~~~  213 (245)
                      +.-+..+...|++..|.+...-.++.+...+.+.. ......+..++.....- .+=.++.+++++-..+.++ ..+.+.
T Consensus        57 ~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~  135 (312)
T 2wpv_A           57 SQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPY  135 (312)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHH
T ss_pred             HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHH
Confidence            34466677778888888876666666666443332 22344455555443211 1235677788888887765 457788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYD  236 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~  236 (245)
                      .|..+|..|.+-|++.+|..+|-
T Consensus       136 LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          136 LHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHH
Confidence            99999999999999999999883

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.82  E-value=1.7  Score=28.20  Aligned_cols=38  Identities=16%  Similarity=0.286  Sum_probs=27.5

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      +|....+..+...|.-.-..|+|++|+..|..++++.-
T Consensus        10 ~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll   47 (86)
T 4a5x_A           10 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLL   47 (86)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            56666677777777777778888888888888777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.05  E-value=13  Score=33.59  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=27.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          156 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      +.|+++++.+.+    ...+..+|..+...++++.|...|.++
T Consensus       669 ~~A~~~~~~~~~----~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          669 TLARDLLTDESA----EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCc----HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            334444444443    345678999999999999999999874

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.13  E-value=2.9  Score=40.46  Aligned_cols=101  Identities=14%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH-----------------HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALE-----------------LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  197 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~-----------------l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~  197 (245)
                      .+.+|.++...|++++|..+|++|-.                 +.+...........|..+...+-..+.++.++...+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            46789999999999999999987631                 1111111111234567788888899999999999999


Q ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 025965          198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  236 (245)
Q Consensus       198 al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~  236 (245)
                      ||+... .++.......+.++=..+...|+|++|.....
T Consensus       925 Ai~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          925 ADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            987632 12222234467777788889999999976653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.83  E-value=10  Score=28.15  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=47.2

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHcCCcchHHH---
Q 025965          143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI------SEREGEYSGSTE---  213 (245)
Q Consensus       143 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~------~~~~~d~~~~~~---  213 (245)
                      ...|+++.|.+..++.       .    ....+..+|.....+|+++-|...|.++-++      +.-.|+......   
T Consensus        16 L~lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~   84 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQN   84 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence            3457777776665432       1    2445777888888888888888888764222      112232211110   


Q ss_pred             ------HHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          214 ------AYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       214 ------a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                            -+..-..++..+||.+++.+.|.+
T Consensus        85 iA~~~g~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           85 IAQTREDFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  011223445667777777776654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=84.19  E-value=3.5  Score=35.95  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965          147 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  226 (245)
Q Consensus       147 ~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g  226 (245)
                      +.++|.+.|++..+.  .+..   ...+++.+-..+.+.|+.++|...+++..    +.|-.|+ ..+|..+=..|...|
T Consensus        85 ~l~~A~~lf~~M~~~--G~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~~Pd-~~tyn~lI~~~~~~g  154 (501)
T 4g26_A           85 GLSRGFDIFKQMIVD--KVVP---NEATFTNGARLAVAKDDPEMAFDMVKQMK----AFGIQPR-LRSYGPALFGFCRKG  154 (501)
T ss_dssp             HHHHHHHHHHHHHHT--TCCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCC-HHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHh--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCc-cceehHHHHHHHHCC
Confidence            356777777765431  1111   24467778888999999999999998843    2343443 457888888999999


Q ss_pred             CHHHHHHHHHHHHH
Q 025965          227 DLERAARFYDKYIS  240 (245)
Q Consensus       227 ~~~~A~~~y~~al~  240 (245)
                      +.++|.+.+++..+
T Consensus       155 ~~~~A~~l~~~M~~  168 (501)
T 4g26_A          155 DADKAYEVDAHMVE  168 (501)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=83.75  E-value=3.7  Score=29.84  Aligned_cols=84  Identities=10%  Similarity=0.047  Sum_probs=62.8

Q ss_pred             hhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 025965          103 ESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL  182 (245)
Q Consensus       103 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~  182 (245)
                      +.|++++...|..      .  .......++.+...+.. ...+|.++|.+.|+.++.+.+.   .   +..+...+..-
T Consensus        40 d~YerAia~~Pp~------k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk---F---AKiwi~~AqFE  104 (161)
T 4h7y_A           40 GRYSQAIEALPPD------K--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK---F---AFVHISFAQFE  104 (161)
T ss_dssp             HHHHHHHHHSCGG------G--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT---B---HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcc------c--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH---H---HHHHHHHHHHH
Confidence            4566777766653      0  13455566666666654 5558999999999999987222   2   77777888888


Q ss_pred             HHcCCHHHHHHHHHHHHHH
Q 025965          183 QRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       183 ~~~g~~~~Ai~~~~~al~~  201 (245)
                      .++|+.+.|...+.+|+.+
T Consensus       105 iRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A          105 LSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHT
T ss_pred             HHcccHHHHHHHHHHHhcc
Confidence            9999999999999999987

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=83.64  E-value=5.1  Score=26.23  Aligned_cols=27  Identities=30%  Similarity=0.348  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +...+..+...|+|++||+..++|..+
T Consensus        18 ~~RrAe~ll~~gkydeAIech~kAa~y   44 (97)
T 2crb_A           18 QSRRADRLLAAGKYEEAISCHRKATTY   44 (97)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            334455555555555555555555444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=82.18  E-value=20  Score=34.38  Aligned_cols=99  Identities=17%  Similarity=0.109  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ-NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .+..+=..|...|+.++|...+.+..+... ....   ....|+-+=..+.+.|+.++|.+.|++-    .+.|-.|+ .
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM----~~~G~~PD-v  200 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---TLDMYNAVMLGWARQGAFKELVYVLFMV----KDAGLTPD-L  200 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---CHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHTTCCCC-H
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHH----HHcCCCCc-H
Confidence            445556778888999999999977544321 1110   2456777888899999999999999884    33555564 4


Q ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 025965          213 EAYGAIADCYTELGD-LERAARFYDKYIS  240 (245)
Q Consensus       213 ~a~~~la~~y~~~g~-~~~A~~~y~~al~  240 (245)
                      .+|+.+=.++.+.|+ .++|.+.+++..+
T Consensus       201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          201 LSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            567777778888887 5788898888765

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.05  E-value=3.6  Score=26.91  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.+..+...+..+...|.||+|+++.+++...+.
T Consensus        13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~   46 (97)
T 2crb_A           13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   46 (97)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4566777889999999999999999999987764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=82.01  E-value=4.3  Score=35.24  Aligned_cols=90  Identities=12%  Similarity=-0.004  Sum_probs=51.3

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       136 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      ...+....+.++.+.|...|++| . .+..  .   ...+...+......+ +++.|...|+.+++.+   ++.+   ..
T Consensus       290 ~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~--~---~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~~~---~~  356 (493)
T 2uy1_A          290 INHLNYVLKKRGLELFRKLFIEL-G-NEGV--G---PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PDST---LL  356 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHH-T-TSCC--C---HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TTCH---HH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-h-CCCC--C---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CCCH---HH
Confidence            33344444567888898889888 2 2211  1   123333344444444 6999999999998762   2233   22


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          215 YGAIADCYTELGDLERAARFYDKY  238 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~a  238 (245)
                      +...+......|+.++|...|+++
T Consensus       357 ~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          357 KEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            333344455666666666666553

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.01  E-value=14  Score=27.58  Aligned_cols=70  Identities=20%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHh----------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALE--LAQN----------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL  199 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~----------~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al  199 (245)
                      +.+.++.+.+|...++|.+|+...++.++  +.++          .-|+......+..+|..+...|+-+|||.++..+.
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            44677788999999999999999998872  1111          12333344557789999999999999999999876


Q ss_pred             HH
Q 025965          200 QI  201 (245)
Q Consensus       200 ~~  201 (245)
                      ..
T Consensus       142 ~~  143 (242)
T 3kae_A          142 GK  143 (242)
T ss_dssp             HH
T ss_pred             CC
Confidence            54

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.84  E-value=18  Score=30.28  Aligned_cols=103  Identities=8%  Similarity=0.042  Sum_probs=70.9

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q 025965          140 KNFLRNQDLEKAFTEFKAALELAQNV-----------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  208 (245)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~al~l~~~~-----------~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~  208 (245)
                      .+.....++++|.++.++........           .+......+...++..|...|+.++|..+.+++-......++.
T Consensus        84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~  163 (393)
T 4b4t_O           84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI  163 (393)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence            44556678899988887653322110           0111234456678888999999999999999998887776553


Q ss_pred             c--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          209 S--GSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       209 ~--~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +  .....|...+..|...+++..+..+.-.++..+
T Consensus       164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            3  345556667888889999988877766666543

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=81.43  E-value=1.6  Score=27.78  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=12.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQ  200 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~  200 (245)
                      ..+|.-+...|+|+.|+.+|+.+++
T Consensus        16 ~k~ARe~Al~GnYdta~~yY~g~~~   40 (78)
T 2rpa_A           16 VKLAREYALLGNYDSAMVYYQGVLD   40 (78)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHH
Confidence            3444445555555555555555443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=81.39  E-value=3.8  Score=26.29  Aligned_cols=31  Identities=13%  Similarity=0.141  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          171 EKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       171 ~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      .+..+...|.-.-..|+|++|+.+|.++++.
T Consensus        18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           18 MARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444666777777777777777777777654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.46  E-value=23  Score=29.14  Aligned_cols=100  Identities=13%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCC-cchHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREGE-YSGST  212 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~-~~Ai~~~~~al~~~~~~~d-~~~~~  212 (245)
                      ++.-+..+...|++..|.+...-.++.+...+-+.. ......+..++.....- .+=..+.+++++-..+.++ ..+.+
T Consensus        58 L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp  136 (336)
T 3lpz_A           58 LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDP  136 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCH
T ss_pred             HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCH
Confidence            334455666667777776665555555554322111 12333444454443321 1225566777877777654 45678


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH
Q 025965          213 EAYGAIADCYTELGDLERAARFY  235 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y  235 (245)
                      ..+..+|..|.+-+++.+|..++
T Consensus       137 ~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          137 ELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHH
Confidence            89999999999999999998887

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=80.19  E-value=3.5  Score=26.16  Aligned_cols=34  Identities=9%  Similarity=0.276  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      .+.....+|+-|...|+|+.|+.+|+.+++....
T Consensus        11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k   44 (78)
T 2rpa_A           11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQMNK   44 (78)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            3556677899999999999999999999886654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.001
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.001
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
                   ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEA 365

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGD 227
           ++I           +AY  + +   E+ D
Sbjct: 366 IRI------SPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 14/115 (12%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
            P   +    L           + +A   +  AL L     D +        L    + Q
Sbjct: 267 QPHFPDAYCNL--ANALKEKGSVAEAEDCYNTALRLCPTHADSL------NNLANIKREQ 318

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 240
           G   EA++ +   L++      +     A+  +A    + G L+ A   Y + I 
Sbjct: 319 GNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
           L     + G +  A ++   + +          +T     ++  + +   L+R+A F   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 238 YIS 240
            I 
Sbjct: 59  AIK 61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 185
           DP   +    L  G      +  ++A   +  AL L+ N             L      Q
Sbjct: 199 DPNFLDAYINL--GNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQ 250

Query: 186 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
           G    AI  +   +++           +AY  +A+   E G +  A   Y+  +
Sbjct: 251 GLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 12/87 (13%)

Query: 136 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 195
           ++      +  D E A            +             L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTG------VLLLLSSIHFQCRRLDRSAHFS 56

Query: 196 SMVLQISEREGEYSGSTEAYGAIADCY 222
           ++ ++            EAY  + + Y
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVY 77

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (105), Expect = 3e-06
 Identities = 16/107 (14%), Positives = 37/107 (34%)

Query: 139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 198
            +  +   + E A    +   E A++++   +  +    L     + G+  +A +     
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317

Query: 199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 245
           L+++ R G  S       A+A    +L  L            R+  +
Sbjct: 318 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 143 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 202
           + + + ++A    K ALE             A   LG  L  +G+   ++       Q++
Sbjct: 23  INDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81

Query: 203 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 239
            +   +  +  +    ++     G L+ A    +K  
Sbjct: 82  RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 118

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 221
            +++++     +            G   EA +   + L+     G +     A   + + 
Sbjct: 2   IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEV 60

Query: 222 YTELGDLERAARFYDKYIS 240
               G+L R+     +   
Sbjct: 61  LHCKGELTRSLALMQQTEQ 79

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 19/167 (11%), Positives = 42/167 (25%), Gaps = 14/167 (8%)

Query: 75  ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 134
               R  LQ + +++   +       K+E    + ++    + +         K     +
Sbjct: 29  VWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQA-----KNRANPN 83

Query: 135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 194
           R +   N     +    F   +   EL       +  +  +  LG    +Q      +K 
Sbjct: 84  RSEVQANLSLFLEAASGFYT-QLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP 142

Query: 195 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 241
            S                     + D         +A  +Y      
Sbjct: 143 QSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 9e-05
 Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 8/86 (9%)

Query: 155 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 214
           +    +  +   +P+ +       G    ++G    A+      +Q            EA
Sbjct: 4   YDKGYQFEEE--NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEA 55

Query: 215 YGAIADCYTELGDLERAARFYDKYIS 240
           +  +     E      A     + + 
Sbjct: 56  WQYLGTTQAENEQELLAISALRRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 173 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-----STEAYGAIADCYTELGD 227
           ++   LG S    G +REA+++    L +  +     G     S   +  +    + LG 
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300

Query: 228 LERAARFYDKYISRLE 243
            +       + +S L 
Sbjct: 301 SDAYGAADARDLSTLL 316

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 205
            D  KA   ++ A E     +      K            G+Y EA   +S +++ S   
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 206 GEYSGS-TEAYGAIADCYTELGDLERAARFYDKYIS 240
                S  + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 7/66 (10%), Positives = 16/66 (24%)

Query: 178 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 237
                + + +   A           ++ G    +   Y     C+   G+   A    + 
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 238 YISRLE 243
            I    
Sbjct: 103 AIQIFT 108

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 6/76 (7%)

Query: 169 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE------REGEYSGSTEAYGAIADCY 222
           +     A          G+Y EA       ++IS                  +  +A+  
Sbjct: 6   VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65

Query: 223 TELGDLERAARFYDKY 238
             L   + A    DK 
Sbjct: 66  AGLRSFDEALHSADKA 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.6
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.46
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.45
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.41
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.29
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.29
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.28
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.21
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.21
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.18
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.13
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.1
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.94
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.9
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.88
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.19
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.06
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.94
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.76
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.67
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.64
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.4
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.3
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.19
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.86
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.19
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.31

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.3e-15  Score=105.77  Aligned_cols=99  Identities=16%  Similarity=0.245  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..+...|..++..|+|++|+..|+++++..|.      ...++.++|.++..+|++++|+..+.+++++      +|..+
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~   71 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPDWG   71 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------chhhhhcccccccccccccccchhhhhHHHh------ccchh
Confidence            34567899999999999999999999999998      8899999999999999999999999999999      88889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|+++|.+|..+|++++|+.+|+++++...
T Consensus        72 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p  102 (117)
T d1elwa_          72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999997654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2e-15  Score=115.18  Aligned_cols=99  Identities=11%  Similarity=0.063  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      ..+...|..++..|+|++|+.+|++|+++.|.      .+.++.++|.+|...|+|++|+.+|++|+++      +|...
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------~p~~~   72 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQSV   72 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh------CCCcH
Confidence            35667899999999999999999999999888      7899999999999999999999999999998      88889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|+++|.+|..+|++++|..+|+++++...
T Consensus        73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999998654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.60  E-value=3.4e-14  Score=104.73  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      .++..+..|..++..|+|++|+..|++|+++.++..+      ....+.++.++|.++..+|+|++|+..+.+++++..+
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            4455556699999999999999999999999998765      2345678999999999999999999999999999887


Q ss_pred             cCC-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          205 EGE-----YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       205 ~~d-----~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ..+     .+....+++++|.+|..+|++++|+.+|++++++.++
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            543     2345668999999999999999999999999998753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=9.3e-15  Score=115.52  Aligned_cols=104  Identities=15%  Similarity=0.024  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  207 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d  207 (245)
                      ++..+..++.+|.+|...|++++|+..|++++++.|+      .+.+++++|.++..+|++++|+..|++++++      
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------  100 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------  100 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHH------
Confidence            4557788899999999999999999999999999888      7889999999999999999999999999999      


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          208 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       208 ~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +|..+.++.++|.+|..+|++++|.++|+++++...
T Consensus       101 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  136 (259)
T d1xnfa_         101 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  136 (259)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence            788888999999999999999999999999998654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.1e-13  Score=111.97  Aligned_cols=148  Identities=14%  Similarity=0.098  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      ..+.+.......+.+.++..|.++++....          .++....+..+..+|.+|..+|++++|+..|++++++.+.
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~----------~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~  109 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH  109 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhh
Confidence            333333333334677788888888887655          3566667788889999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          165 VKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~-~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .++......++.++|.++.. .|++++|+.+|++++++.+..++.+....++.++|.+|..+|+|++|.++|++++...
T Consensus       110 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence            99999999999999999866 6999999999999999999988888888899999999999999999999999998764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-14  Score=107.17  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      .++..+...|..|+..|+|++|+..|++++++.|+      ...++.++|.++..+|++++|+..|++++++      +|
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------~p   75 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DK   75 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHH------cc
Confidence            45667778899999999999999999999999998      8999999999999999999999999999999      89


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ....++.++|.+|..+|++++|..+|++++..-.
T Consensus        76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p  109 (159)
T d1a17a_          76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP  109 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999999998643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-14  Score=110.21  Aligned_cols=133  Identities=14%  Similarity=0.051  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 025965           84 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  163 (245)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  163 (245)
                      ++.+++.......+.+.+++.|.+..                ++.   ...++++|.+|..+|++++|+..|++|+++.|
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~----------------~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp   67 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ----------------DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRDK   67 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----------------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC----------------CCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh
Confidence            45555555555555666666554321                121   23678899999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHcCCHHHHHH
Q 025965          164 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----------EYSGSTEAYGAIADCYTELGDLERAAR  233 (245)
Q Consensus       164 ~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~----------d~~~~~~a~~~la~~y~~~g~~~~A~~  233 (245)
                      +      .+.++.++|.++..+|+|++|+..|++++...+...          .......+++++|.+|..+|++++|.+
T Consensus        68 ~------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          68 H------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             h------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            8      899999999999999999999999999987633211          122456889999999999999999999


Q ss_pred             HHHHHHHH
Q 025965          234 FYDKYISR  241 (245)
Q Consensus       234 ~y~~al~~  241 (245)
                      .++++++.
T Consensus       142 ~l~~A~~~  149 (192)
T d1hh8a_         142 QLALATSM  149 (192)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99999864

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.6e-14  Score=100.12  Aligned_cols=105  Identities=19%  Similarity=0.374  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-cc
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YS  209 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d-~~  209 (245)
                      ++.....+|..++..|+|++|+.+|++++++.|+      ...++.++|.++..+|+|++|+..+++++++...... ..
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            4556778899999999999999999999999887      7889999999999999999999999999999776543 34


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+.+|..+|.++..++++++|+++|++++..
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            56789999999999999999999999999865

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.8e-14  Score=106.04  Aligned_cols=110  Identities=13%  Similarity=0.159  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  198 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~a  198 (245)
                      ....+..+...|..++..|+|++|+..|++|+++.+....         ......++.++|.+|..+|+|++|+.+++++
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            3445666778899999999999999999999998775433         2234566889999999999999999999999


Q ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          199 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       199 l~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      |++      +|..+.+++++|.+|..+|++++|..+|+++++.-+
T Consensus        89 l~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P  127 (170)
T d1p5qa1          89 LEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  127 (170)
T ss_dssp             HHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             hhc------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            999      888999999999999999999999999999998754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.55  E-value=1.4e-14  Score=100.85  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ..+..|..+...|++++|+..|++++...|+      ...++.++|.++...|++++|+.+|++++++      +|....
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~   85 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIA   85 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccc------cchhhhhhhhhhhhhhhHHHhhccccccccc------cccccc
Confidence            3467899999999999999999999999988      7899999999999999999999999999999      898999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGDLERAARFYDKYI  239 (245)
Q Consensus       214 a~~~la~~y~~~g~~~~A~~~y~~al  239 (245)
                      ++.++|.+|...|++++|.+++++.|
T Consensus        86 a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          86 VHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.51  E-value=1.3e-13  Score=101.21  Aligned_cols=110  Identities=21%  Similarity=0.240  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          128 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------IEEKKAARGLGASLQRQGKYREAIKYHSM  197 (245)
Q Consensus       128 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~----------~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~  197 (245)
                      ....+..+...|..++..|+|.+|+..|++|+++.+...+.          .....++.|+|.++..+|+|++|+.++.+
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            34556677789999999999999999999999877654321          11345688999999999999999999999


Q ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          198 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       198 al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++++      +|....+|+++|.+|..+|++++|..+|++++++.+
T Consensus        93 al~~------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          93 VLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             cccc------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999      888899999999999999999999999999998754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.6e-13  Score=109.59  Aligned_cols=121  Identities=18%  Similarity=0.168  Sum_probs=102.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      ....++..+.+++...+.              ......+..+|.++...|++++|+..+++++...|+      ...++.
T Consensus       151 ~~~~a~~~~~~al~~~p~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~  210 (323)
T d1fcha_         151 LFLEVKELFLAAVRLDPT--------------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWN  210 (323)
T ss_dssp             HHHHHHHHHHHHHHHSTT--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhc--------------ccccccchhhHHHHHHHHHHhhhhcccccccccccc------cccchh
Confidence            344455566666654432              112346677899999999999999999999998887      678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++|.++..+|++++|+..|++++++      +|..+.+++++|.+|..+|++++|+.+|+++++..+
T Consensus       211 ~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  271 (323)
T d1fcha_         211 KLGATLANGNQSEEAVAAYRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  271 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccchhHHHHHHHHHHH------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999998      788889999999999999999999999999999754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.46  E-value=5.6e-13  Score=99.27  Aligned_cols=108  Identities=11%  Similarity=0.100  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 025965          130 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  200 (245)
Q Consensus       130 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~  200 (245)
                      ..+..+...|..++..|+|.+|+..|++|+.+.+....         ......++.|+|.++..+|+|++|+.+++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            45667778899999999999999999999987754332         222445688999999999999999999999999


Q ss_pred             HHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          201 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       201 ~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +      +|....+++++|.+|..+|++++|..+|+++++.-+
T Consensus        93 l------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          93 L------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             H------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             c------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9      888999999999999999999999999999997643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.4e-13  Score=98.25  Aligned_cols=159  Identities=19%  Similarity=0.209  Sum_probs=122.2

Q ss_pred             hchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHH
Q 025965           71 GGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEK  150 (245)
Q Consensus        71 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  150 (245)
                      |-+....+-.....+++.+.......+.+.++..|.+++...+......... ...........+.++|.+|..+|+|++
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-AQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH-HhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            3344445555666888888889988999999999999999876532211111 001122344566689999999999999


Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHH
Q 025965          151 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  230 (245)
Q Consensus       151 A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~  230 (245)
                      |+.++++++++.|+      ...++.++|.++..+|+|++|+..|++++++      +|....+...++.+....++..+
T Consensus        81 A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          81 AIESCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             HHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhcccc------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988      7899999999999999999999999999999      78888899999999887776665


Q ss_pred             HH-HHHHHHHHHh
Q 025965          231 AA-RFYDKYISRL  242 (245)
Q Consensus       231 A~-~~y~~al~~~  242 (245)
                      .. +.|.+.++..
T Consensus       149 ~e~~~~~~~f~~~  161 (170)
T d1p5qa1         149 REKKLYANMFERL  161 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            43 3355555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=2.8e-13  Score=99.43  Aligned_cols=139  Identities=16%  Similarity=0.167  Sum_probs=110.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 025965           76 RQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF  155 (245)
Q Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~  155 (245)
                      ..+......+.+++.........+.++..|.+++...+..................+..+.++|.+|+.+|++++|+.++
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            34445556788888888888889999999999998776532221111111122234556778999999999999999999


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 025965          156 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  226 (245)
Q Consensus       156 ~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g  226 (245)
                      ++++++.|.      ...+++++|.++..+|++++|+..|++++++      +|....+...++.+...++
T Consensus        91 ~~al~~~p~------~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          91 SKVLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHH
T ss_pred             hccccccch------hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHH
Confidence            999999888      7899999999999999999999999999999      8888888888888776553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=1.8e-12  Score=96.48  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----------d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      +......|..++..|+|++|+..|++++++.+...          -......++.++|.++..+|+|++|+.+|+++|++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            34455779999999999999999999998765321          12235667899999999999999999999999998


Q ss_pred             HHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          202 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       202 ~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                            +|..+.+|+++|.+|..+|++++|+.+|++++++-.
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence                  888999999999999999999999999999998753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.5e-13  Score=102.04  Aligned_cols=97  Identities=19%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ++..+.+.|..+...|+|++|+..|.++       .++  .+.+++++|.++..+|++++|+.+|++|+++      +|.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------dp~   68 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV-------QDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKH   68 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc-------CCC--CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH------hhh
Confidence            4456667899999999999999998763       222  3467899999999999999999999999999      899


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      .+.+|+++|.+|..+|++++|..+|++++...
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=4.4e-12  Score=102.33  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+..+...|.+|...|+|++|+..|++|+++....+++...+.++.++|.+|..+|++++|+++|++++++....++...
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            34466678999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTE-LGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~-~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++.++|.+|.. .|++++|+++|+++++..+
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999965 6999999999999998754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.41  E-value=1.9e-12  Score=96.36  Aligned_cols=158  Identities=16%  Similarity=0.157  Sum_probs=122.3

Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHH
Q 025965           73 LLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAF  152 (245)
Q Consensus        73 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  152 (245)
                      +....+-...+.+.+.+...........++..|.+++...+......... ...........+.++|.+|..+|++++|+
T Consensus         6 m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai   84 (168)
T d1kt1a1           6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-SKASESFLLAAFLNLAMCYLKLREYTKAV   84 (168)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-hhhcchhHHHHHHhHHHHHHHhhhcccch
Confidence            33344445556788888888888889999999999998865532211111 11223345566778999999999999999


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHH-HH
Q 025965          153 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE-RA  231 (245)
Q Consensus       153 ~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~-~A  231 (245)
                      .++++++++.|.      ...+++++|.++..+|+|++|+..|.+++++      +|....+...++.+....+++. +.
T Consensus        85 ~~~~~al~l~p~------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~~~e~~  152 (168)
T d1kt1a1          85 ECCDKALGLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQIFMCQKKAKEHNERD  152 (168)
T ss_dssp             HHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999888      7899999999999999999999999999998      7888889999999988777664 45


Q ss_pred             HHHHHHHHHHhh
Q 025965          232 ARFYDKYISRLE  243 (245)
Q Consensus       232 ~~~y~~al~~~~  243 (245)
                      .+.|.+..+.+.
T Consensus       153 kk~~~~~f~~~~  164 (168)
T d1kt1a1         153 RRTYANMFKKFA  164 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhh
Confidence            566666655543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-12  Score=91.89  Aligned_cols=113  Identities=12%  Similarity=0.152  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965           82 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  161 (245)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  161 (245)
                      ++++.+++.......+.+.++..|.+++...|.                ....+..+|.+|..+|++++|+..+++++++
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------------chhhhhcccccccccccccccchhhhhHHHh
Confidence            456778888888888999999999999987765                2457888899999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 025965          162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  222 (245)
Q Consensus       162 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y  222 (245)
                      .|+      ...++.++|.++..+|++++|+..|++++++      +|....++..++.+.
T Consensus        67 ~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          67 KPD------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH------EANNPQLKEGLQNME  115 (117)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHH
T ss_pred             ccc------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHh
Confidence            988      8889999999999999999999999999998      788888888887764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.4e-12  Score=85.79  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .++.+|.+++..|+|++|+.+|++|+++.+.... ......++.++|.++.++|++++|+.+|++++++      +|...
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l------~P~~~   80 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------DPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh------CcCCH
Confidence            5678999999999999999999999999986533 2235788999999999999999999999999999      89989


Q ss_pred             HHHHHHHHHHHHc
Q 025965          213 EAYGAIADCYTEL  225 (245)
Q Consensus       213 ~a~~~la~~y~~~  225 (245)
                      .++.|++.+...+
T Consensus        81 ~a~~Nl~~~~~~l   93 (95)
T d1tjca_          81 RANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998765543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.9e-12  Score=92.20  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965           82 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  161 (245)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  161 (245)
                      .+++..++.......+++.++..|.+++...|.                ....+.++|.++...|++++|+..|++++++
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~   73 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIEL   73 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchh----------------hhhhhhhhHHHHHhccccchHHHHHHHHHHH
Confidence            356778888888888899999999999997764                3557788999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 025965          162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT--ELGDLERAARFYDK  237 (245)
Q Consensus       162 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~--~~g~~~~A~~~y~~  237 (245)
                      .|+      ...++.++|.++..+|++++|+..+++++.+      +|....++..++.+..  ..+.+++|......
T Consensus        74 ~p~------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          74 DKK------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            988      8899999999999999999999999999999      7777777777776654  44456667654433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=2.5e-12  Score=95.65  Aligned_cols=135  Identities=16%  Similarity=0.123  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965           85 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      +.+.+.......+.+.++..|.+++...+.............-.+..+..+.++|.+|..+|++++|+..|++++++.|.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            33444444444566667777777776543321111111111223456677888999999999999999999999999887


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHH
Q 025965          165 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA  231 (245)
Q Consensus       165 ~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A  231 (245)
                            ...+++++|.++..+|+|++|+..|++++++      +|....++..++.++....+..++
T Consensus       110 ------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l------~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         110 ------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                  7899999999999999999999999999999      787788899999888777665554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.1e-12  Score=103.37  Aligned_cols=96  Identities=10%  Similarity=0.025  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHH
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  213 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~  213 (245)
                      ++..+|.++..+|++++|+..+++++++.|+      ...++.++|.++...|++++|+.++++++++      +|....
T Consensus       114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~------~p~n~~  181 (315)
T d2h6fa1         114 VWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNS  181 (315)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHhHHHHhhccHHHHHHHHhhhhhhhhc------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------CCccHH
Confidence            4444455555555555555555555555444      4444555555555555555555555555554      444444


Q ss_pred             HHHHHHHHHHHcCC------HHHHHHHHHHHHHH
Q 025965          214 AYGAIADCYTELGD------LERAARFYDKYISR  241 (245)
Q Consensus       214 a~~~la~~y~~~g~------~~~A~~~y~~al~~  241 (245)
                      +|+++|.++...+.      +++|++++.++++.
T Consensus       182 a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~  215 (315)
T d2h6fa1         182 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL  215 (315)
T ss_dssp             HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh
Confidence            55555555444443      34455555555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-12  Score=91.09  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          138 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       138 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g---~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      ++..+...+++++|.+.|++++.+.|.      ...+++++|.++.+.+   ++++|+..+++++..    ...+....+
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~   74 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHH
Confidence            456777888999999999999999998      8899999999997644   556799999998765    112344679


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ++++|.+|..+|++++|.++|+++++.-+
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence            99999999999999999999999998654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5e-12  Score=103.72  Aligned_cols=119  Identities=17%  Similarity=0.229  Sum_probs=98.6

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  176 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~  176 (245)
                      +.+.++..|.+++...|.                ...++..+|.++...|++++|+..+++++...+.      ....+.
T Consensus       252 ~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  309 (388)
T d1w3ba_         252 LIDLAIDTYRRAIELQPH----------------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLN  309 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSS----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhh
Confidence            445556666666654432                1335667899999999999999999999887776      677888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          177 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       177 ~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .+|.++...|++++|+.+|++++++      .|..+.++.++|.+|..+|++++|..+|+++++.-+
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTS------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999887      777889999999999999999999999999997643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=2.3e-12  Score=97.71  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 025965           82 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  161 (245)
Q Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  161 (245)
                      .+.+.+++..+...++.+.++..|.+++...|.                ....+.++|.+|...|++++|+.+|++|+++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~----------------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            356778888888888999999999999998765                2457888999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 025965          162 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  206 (245)
Q Consensus       162 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~  206 (245)
                      .|+      ...++.++|.++..+|+|++|+..|++++++.....
T Consensus        68 ~p~------~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          68 DGQ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            887      788999999999999999999999999999866533

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.5e-09  Score=87.46  Aligned_cols=138  Identities=11%  Similarity=-0.037  Sum_probs=121.1

Q ss_pred             HHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 025965           95 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  174 (245)
Q Consensus        95 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a  174 (245)
                      .++.+.++..+++++...+.           ++....+.++..+|.+|...|++++|+..|++++++.+..++......+
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~-----------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPP-----------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcC-----------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            34678888888888887765           5556667788889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISEREGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d--~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.++|.++...|++..|+..+.+++.+......  .+.....+..+|.++...|+++.|..++++++....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            999999999999999999999999999887644  345667788999999999999999999999987654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.6e-11  Score=96.76  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  214 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a  214 (245)
                      .+..|..++..|++++|+..|+++++..|+      ...++.++|.++...|++++|+..|.+++++      .|....+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~   89 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLEL------KPDNQTA   89 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhcc------ccccccc
Confidence            456899999999999999999999998888      7889999999999999999999999999999      7888899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          215 YGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       215 ~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.++|.+|...|++++|.+.+++++...+
T Consensus        90 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          90 LMALAVSFTNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             cccccccccccccccccccchhhHHHhcc
Confidence            99999999999999999999999987643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.21  E-value=5.9e-10  Score=81.35  Aligned_cols=135  Identities=11%  Similarity=0.049  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Q 025965           87 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  166 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  166 (245)
                      ..+......+..+.++..|.+++...+......    ........+.++.++|.+|..+|++++|+..+++++.+.+...
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~----~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE----AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhh----hcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            334445555578889999999998876521100    0122344567888999999999999999999999999998643


Q ss_pred             C-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHc
Q 025965          167 D-----PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTEL  225 (245)
Q Consensus       167 d-----~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~-~~~~a~~~la~~y~~~  225 (245)
                      +     ......+++++|.++..+|++++|+..|++++++.++..+.. ........++..+..+
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence            3     234566799999999999999999999999999998876543 3444444455544443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.5e-11  Score=96.88  Aligned_cols=94  Identities=14%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 025965          137 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  216 (245)
Q Consensus       137 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~  216 (245)
                      .+|..++..|+|++|+..|+++++..|+      ...++..+|.++...|++++|+.+|+++++.      +|..+.++.
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~   71 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------NPLLAEAYS   71 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Confidence            4689999999999999999999998877      6788999999999999999999999999998      788889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          217 AIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       217 ~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      ++|.+|..+|++++|...+..+.+..
T Consensus        72 ~l~~~~~~~g~~~~A~~~~~~~~~~~   97 (388)
T d1w3ba_          72 NLGNVYKERGQLQEAIEHYRHALRLK   97 (388)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhhccccccccccccccccc
Confidence            99999999999999999999988754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.6e-10  Score=89.28  Aligned_cols=127  Identities=14%  Similarity=0.040  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      .-+...+......++.+.++..|.+++...|.                ...++..+|.+|..+|++++|+..|++++++.
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  101 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD  101 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----------------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH
Confidence            34555566666666889999999999987764                24477889999999999999999999999998


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 025965          163 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  237 (245)
Q Consensus       163 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~  237 (245)
                      |+      ...++.++|.++..+|++++|+..|+++++.      .|........++.++...++.+.+......
T Consensus       102 p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (259)
T d1xnfa_         102 PT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  164 (259)
T ss_dssp             TT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hh------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh------ccccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            87      6778999999999999999999999999998      666666777778888877765555444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=2.8e-11  Score=87.70  Aligned_cols=90  Identities=19%  Similarity=0.201  Sum_probs=77.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          141 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       141 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~----------g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+.+.+.|++|+..|++++++.|+      .+.++.++|.++...          +.+++|+..|++++++      +|.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------~P~   73 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPK   73 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cch
Confidence            345567799999999999999999      899999999998854          5568999999999999      899


Q ss_pred             HHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHh
Q 025965          211 STEAYGAIADCYTELGD-----------LERAARFYDKYISRL  242 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~-----------~~~A~~~y~~al~~~  242 (245)
                      .+.+++++|.+|..+|+           +++|.++|+++++.-
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            99999999999988764           688888888888754

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.2e-10  Score=75.83  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d-~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.-++.+|.+++++|+|++|+.+|++|+++...... .+..+.++.++|.+|..+|++++|+.+|++++++-+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence            345679999999999999999999999999776432 345788999999999999999999999999998754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-10  Score=93.38  Aligned_cols=98  Identities=13%  Similarity=0.081  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcch
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ..++.++|.++...+.+++|+..+++|+++.|.      ...+++++|.++...| ++++|+.++++++++      +|.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~------~p~  110 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------QPK  110 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH------HHh
Confidence            334444455555555666666666666655555      5555555555555544 355555555555555      555


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ...+++++|.++..+|++++|+++++++++.
T Consensus       111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~  141 (315)
T d2h6fa1         111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQ  141 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             hhhHHHHHhHHHHhhccHHHHHHHHhhhhhh
Confidence            5555555555555555555555555555553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.1e-09  Score=88.29  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          131 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       131 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+......|.++...|++++|+..++++++..|. .+......++..+|.++..+|++++|+..|++++++....++.+.
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3444555799999999999999999999998765 344456778999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          211 STEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       211 ~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ...++.+++.++...|+++.|...+.+++....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            899999999999999999999999999987653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-09  Score=75.81  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  162 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  162 (245)
                      .+..+.+.......+.+.++..|.++++..|.                ...++.++|.+|..+|+|++|+..+++++++.
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   68 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG   68 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC
Confidence            35556677777777889999999999987664                24578889999999999999999999999999


Q ss_pred             HhCCCh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          163 QNVKDP-IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  201 (245)
Q Consensus       163 ~~~~d~-~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~  201 (245)
                      ++..+. ...+.++.++|.++..++++++|+.+|++++..
T Consensus        69 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            987654 446789999999999999999999999999876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.8e-09  Score=75.59  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhCCChH
Q 025965           93 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPI  169 (245)
Q Consensus        93 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~  169 (245)
                      ......+.+.+.|++++...|.                ...+.+++|.++...+   ++++|+..++++++..+.    .
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~----------------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~----~   69 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSV----------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----E   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCC----------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH----H
T ss_pred             cCHHHHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC----c
Confidence            3344667777889999997765                2347778899987654   455789899988764322    2


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 025965          170 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  224 (245)
Q Consensus       170 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~  224 (245)
                      ....+++++|.+|...|+|++|+.+|++++++      +|....+...++.+...
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~------~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHH
Confidence            24678999999999999999999999999999      89888888888776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1e-09  Score=94.92  Aligned_cols=96  Identities=13%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchH
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  211 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~  211 (245)
                      ...+..+|..+...|++++|...+++++...+        ..++.++|.++...|+|++|+.+|++|+++      .|..
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l------~P~~  185 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSN  185 (497)
T ss_dssp             -----------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTB
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCc
Confidence            44566789999999999999999999987665        357889999999999999999999999999      8888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 025965          212 TEAYGAIADCYTELGDLERAARFYDKYISR  241 (245)
Q Consensus       212 ~~a~~~la~~y~~~g~~~~A~~~y~~al~~  241 (245)
                      ..+|+++|.+|...|++.+|..+|.+++..
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            999999999999999999999999999864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.94  E-value=9.1e-10  Score=79.47  Aligned_cols=102  Identities=14%  Similarity=0.143  Sum_probs=82.6

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHhC
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN----------QDLEKAFTEFKAALELAQNV  165 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------g~~~~A~~~~~~al~l~~~~  165 (245)
                      ...+.++..|++++...|.                .+.++.++|.++...          +.+++|+..|++|+++.|+ 
T Consensus        11 ~~fe~A~~~~e~al~~~P~----------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-   73 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-   73 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             ccHHHHHHHHHHHHhhCCc----------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-
Confidence            3577888889999887775                244677778888744          4568999999999999998 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 025965          166 KDPIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  225 (245)
Q Consensus       166 ~d~~~~~~a~~~lg~~~~~~g~-----------~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~  225 (245)
                           ...+++++|.+|..+|+           |++|+.+|++++++      +|....++.+++.+....
T Consensus        74 -----~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l------~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          74 -----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE------QPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTHH
T ss_pred             -----hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc------CCCHHHHHHHHHHHHHHH
Confidence                 88899999999988764           78999999999999      888888888888775433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=2.4e-08  Score=74.38  Aligned_cols=109  Identities=13%  Similarity=0.057  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-----CC-----------hHHHHHHHHHHHHHHHHcCCHHHHH
Q 025965          129 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-----------PIEEKKAARGLGASLQRQGKYREAI  192 (245)
Q Consensus       129 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~d-----------~~~~~~a~~~lg~~~~~~g~~~~Ai  192 (245)
                      ..........|......|++++|...|.+|+.+++.-     .+           ......++.+++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3456677888999999999999999999999876521     11           1123467889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          193 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       193 ~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      .++++++.+      +|....+|.+++.+|...|++++|...|+++.+.+.
T Consensus        88 ~~~~~al~~------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          88 AELEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999999999      899999999999999999999999999999977653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.88  E-value=2.3e-09  Score=73.70  Aligned_cols=89  Identities=11%  Similarity=-0.012  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCh
Q 025965           89 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  168 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~  168 (245)
                      +......++...++..+.+++...|.                ...++..+|.++...|++++|+.+|++++++.|+    
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----   82 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----   82 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc----------------cchhhhhhhhhhhhhhhHHHhhcccccccccccc----
Confidence            33344445566777778888876654                2457788899999999999999999999999998    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 025965          169 IEEKKAARGLGASLQRQGKYREAIKYHSMVL  199 (245)
Q Consensus       169 ~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al  199 (245)
                        ...++.++|.++..+|++++|++.+++.|
T Consensus        83 --~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 --DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence              88999999999999999999999999975

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.9e-08  Score=84.71  Aligned_cols=82  Identities=11%  Similarity=0.056  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHH
Q 025965          133 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  212 (245)
Q Consensus       133 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~  212 (245)
                      .++.++|.++...|++++|+.+|++|+++.|+      .+.+++++|.++...|++.+|+.+|.+++..      ++..+
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~------~~~~~  220 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV------KFPFP  220 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS------SBCCH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCH
Confidence            46778899999999999999999999999999      8889999999999999999999999999988      67778


Q ss_pred             HHHHHHHHHHHHcC
Q 025965          213 EAYGAIADCYTELG  226 (245)
Q Consensus       213 ~a~~~la~~y~~~g  226 (245)
                      .++.|++.++....
T Consensus       221 ~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         221 AASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            89999998887544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=3.6e-08  Score=80.10  Aligned_cols=118  Identities=8%  Similarity=-0.056  Sum_probs=89.5

Q ss_pred             HHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 025965           97 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKA  174 (245)
Q Consensus        97 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~a  174 (245)
                      ..+.++..+.+++...|.              .  ...+..+|.++...+  ++++|+..+++++++.+.      ...+
T Consensus        88 ~~~~al~~~~~~l~~~pk--------------~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~------~~~~  145 (334)
T d1dcea1          88 LVKAELGFLESCLRVNPK--------------S--YGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHC  145 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTT--------------C--HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             HHHHHHHHHHHHHHhCCC--------------c--HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch------hhhh
Confidence            445555666666665443              1  234556677766655  589999999999998775      4444


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          175 -ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       175 -~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                       ...+|.++...+++++|+.+++++++.      +|....+++++|.++..+|++++|...++++++..
T Consensus       146 ~~~~~~~~~~~~~~~~~Al~~~~~~i~~------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~  208 (334)
T d1dcea1         146 WDYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL  208 (334)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred             hhhHHHHHHHhccccHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH
Confidence             457888999999999999999999988      88889999999999999999988766665555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=4.3e-08  Score=79.63  Aligned_cols=105  Identities=5%  Similarity=-0.208  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC------------ChHH------------HHHHHHHHHHHHHHcCC
Q 025965          132 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK------------DPIE------------EKKAARGLGASLQRQGK  187 (245)
Q Consensus       132 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------d~~~------------~~~a~~~lg~~~~~~g~  187 (245)
                      ..++.++|.++...|++++|...+++++.+.+...            +...            ...++.++|..+...|+
T Consensus       178 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  257 (334)
T d1dcea1         178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS  257 (334)
T ss_dssp             HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh
Confidence            33566667777777777666555444444433310            0000            00112246666777778


Q ss_pred             HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 025965          188 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  242 (245)
Q Consensus       188 ~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~  242 (245)
                      +++|+..+.++++.      +|....++..+|.+|...|++++|.++|+++++.-
T Consensus       258 ~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         258 ELESCKELQELEPE------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             HHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            88888888887766      88899999999999999999999999999999864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.19  E-value=3.2e-07  Score=72.36  Aligned_cols=121  Identities=10%  Similarity=-0.030  Sum_probs=87.5

Q ss_pred             HHHHHHHhhhhhhhcccccccCCCccccccCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 025965           96 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  175 (245)
Q Consensus        96 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~  175 (245)
                      ++.+.++..+++++...|.                .......+|.++...|++++|...+++++++.|+      ...+.
T Consensus        10 G~l~eAl~~l~~al~~~P~----------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------~~~~~   67 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPK----------------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YLPGA   67 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------GHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cHHHH
Confidence            4566677777777776664                2345666788888888888888888888888887      66777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          176 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       176 ~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..++.++...+..+++...+.+...     -..+.....+...+..+...|++++|...++++.+...
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~~-----~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAKV-----LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEEC-----CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhhc-----ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            7777777666655555443332211     12455667778889999999999999999999987653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.14  E-value=2.3e-06  Score=67.34  Aligned_cols=81  Identities=11%  Similarity=0.099  Sum_probs=71.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  218 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~l  218 (245)
                      +......|++++|+..++++++..|+      ...+...+|.++...|++++|+..+++++++      +|....++.++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l------~P~~~~~~~~l   70 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKL------FPEYLPGASQL   70 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CGGGHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCcHHHHHHH
Confidence            45567789999999999999999998      8999999999999999999999999999999      88888888888


Q ss_pred             HHHHHHcCCHHHH
Q 025965          219 ADCYTELGDLERA  231 (245)
Q Consensus       219 a~~y~~~g~~~~A  231 (245)
                      +.++...+..+++
T Consensus        71 ~~ll~a~~~~~~a   83 (264)
T d1zbpa1          71 RHLVKAAQARKDF   83 (264)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHH
Confidence            8887766555444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.09  E-value=3.1e-05  Score=53.89  Aligned_cols=89  Identities=18%  Similarity=0.172  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          135 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       135 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      .+.+|.  ....++++|+.+++++.+.  .      ...+.+.+|..|..    ..|+++|+.+|+++.+.        +
T Consensus        28 ~~~l~~--~~~~~~~~a~~~~~~aa~~--g------~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------g   89 (133)
T d1klxa_          28 CLSLVS--NSQINKQKLFQYLSKACEL--N------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------N   89 (133)
T ss_dssp             HHHHHT--CTTSCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------T
T ss_pred             hhhhcc--ccccCHHHHHHHHhhhhcc--c------chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--------C
Confidence            344443  3457899999999998653  2      46778899999886    56899999999998643        3


Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          211 STEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       211 ~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                      .+.+.+++|.+|..    ..|+++|..+|++|.+.
T Consensus        90 ~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          90 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            46788999999987    56899999999999764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.06  E-value=3.3e-05  Score=56.79  Aligned_cols=122  Identities=11%  Similarity=-0.072  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCCcc-cccc-----CChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 025965           83 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPED-EVIV-----DPKKEELLSRLKTGKNFLRNQDLEKAFTEFK  156 (245)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~  156 (245)
                      +.+...+......++.+.++..|.+++...+........ ....     .-......+...+|..+...|++++|+..++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            455566666666677888888899999886642110000 0000     0012344566788999999999999999999


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCcch
Q 025965          157 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSG  210 (245)
Q Consensus       157 ~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~-~~~d~~~  210 (245)
                      +++++.|.      ...++..++.++...|++.+|+..|+++.+... +.|-.|+
T Consensus        92 ~al~~~P~------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          92 ALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99999998      889999999999999999999999999987765 3566665

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.94  E-value=7.8e-05  Score=57.54  Aligned_cols=92  Identities=16%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcc
Q 025965          134 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYS  209 (245)
Q Consensus       134 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~Ai~~~~~al~~~~~~~d~~  209 (245)
                      +++.+|..++..+|+++|+.+|++|.+.    +    ...++.+||.+|..    ..++..|..+++++.+.        
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--------   67 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDL----K----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--------   67 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--------
Confidence            6788899999999999999999999653    2    35688999999987    77999999999997543        


Q ss_pred             hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          210 GSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       210 ~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                      +.+.+..++|..+..    .++.++|..+++++.+.
T Consensus        68 ~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~  103 (265)
T d1ouva_          68 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  103 (265)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            245677888888875    56889999999988753

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=0.00026  Score=48.24  Aligned_cols=67  Identities=15%  Similarity=0.110  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          172 KKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~---~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      ..+.++.|+++.+..+   .++|+..++++++.     ++....++++++|..|.++|+|++|..++++++++-.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP  104 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  104 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            4567777777776544   45788888877654     2234567899999999999999999999999988643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=0.00022  Score=56.46  Aligned_cols=90  Identities=17%  Similarity=0.108  Sum_probs=42.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 025965          139 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  217 (245)
Q Consensus       139 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~-~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~  217 (245)
                      +......|+++.|...|++++...+.      ....+...+... ...|+.+.|...|+++++.      .|.....+..
T Consensus       141 ~~~~~~~~~~~~ar~i~~~al~~~~~------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~------~p~~~~~w~~  208 (308)
T d2onda1         141 MKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLA  208 (308)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------hhhhHHHHHH
Confidence            44444445555555555555544333      122222333322 2234555555555555544      3333444444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Q 025965          218 IADCYTELGDLERAARFYDKYIS  240 (245)
Q Consensus       218 la~~y~~~g~~~~A~~~y~~al~  240 (245)
                      .+......|++++|...|++++.
T Consensus       209 y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         209 YIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            55555555555555555555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=0.00033  Score=47.71  Aligned_cols=75  Identities=12%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch
Q 025965          134 SRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  210 (245)
Q Consensus       134 ~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~  210 (245)
                      ..+..|++.....+   .++++..+++.+...+     .....+++++|..|++.|+|++|..++++++++      +|.
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-----~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i------eP~  105 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------ERN  105 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTT
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc------CCC
Confidence            55666777765544   4578888888776433     225689999999999999999999999999999      887


Q ss_pred             HHHHHHHHH
Q 025965          211 STEAYGAIA  219 (245)
Q Consensus       211 ~~~a~~~la  219 (245)
                      ...+....-
T Consensus       106 n~qA~~L~~  114 (124)
T d2pqrb1         106 NKQVGALKS  114 (124)
T ss_dssp             CHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            766655443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.40  E-value=0.00034  Score=53.80  Aligned_cols=62  Identities=24%  Similarity=0.336  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 025965          172 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  241 (245)
Q Consensus       172 ~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~----~g~~~~A~~~y~~al~~  241 (245)
                      +.+++++|..+...+|+++|+++|+++.+.        +...+++++|.+|..    ..++++|..+++++.+.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence            468899999999999999999999998543        346789999999997    77999999999988763

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.0029  Score=49.66  Aligned_cols=101  Identities=13%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             HHHHHHH-HHHCCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcch-HH
Q 025965          135 RLKTGKN-FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-ST  212 (245)
Q Consensus       135 ~~~~g~~-~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~-~~  212 (245)
                      +...|.. +...|+.+.|...|++++...+.      ....+...+......|++++|...|+++++..   ..++. ..
T Consensus       171 ~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~------~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~---~~~~~~~~  241 (308)
T d2onda1         171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---SLPPEKSG  241 (308)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS---SSCGGGCH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHHH
Confidence            3344554 34568999999999999998877      56777788888899999999999999998752   12222 23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 025965          213 EAYGAIADCYTELGDLERAARFYDKYISRLES  244 (245)
Q Consensus       213 ~a~~~la~~y~~~g~~~~A~~~y~~al~~~~~  244 (245)
                      ..+......-...|+.+.+.+.++++.+.+.+
T Consensus       242 ~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         242 EIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            34555555556789999999999999887753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.19  E-value=0.00038  Score=48.06  Aligned_cols=78  Identities=26%  Similarity=0.339  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-
Q 025965          146 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  224 (245)
Q Consensus       146 g~~~~A~~~~~~al~l~~~~~d~~~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~~~d~~~~~~a~~~la~~y~~-  224 (245)
                      .|+++|+.+|+++.+.    ++    ..++.++|.  ....++++|+.+++++.+.        +.+.+.+++|..|.. 
T Consensus         7 kd~~~A~~~~~kaa~~----g~----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--------g~~~a~~~Lg~~y~~g   68 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL----NE----MFGCLSLVS--NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG   68 (133)
T ss_dssp             HHHHHHHHHHHHHHHT----TC----TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHC----CC----hhhhhhhcc--ccccCHHHHHHHHhhhhcc--------cchhhhhhHHHhhhhc
Confidence            3788999999998753    22    344556654  3457899999999998643        346788999999986 


Q ss_pred             ---cCCHHHHHHHHHHHHHH
Q 025965          225 ---LGDLERAARFYDKYISR  241 (245)
Q Consensus       225 ---~g~~~~A~~~y~~al~~  241 (245)
                         ..|+++|.++|+++.+.
T Consensus        69 ~~~~~d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          69 KYVKKDLRKAAQYYSKACGL   88 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHHHHHhhhhcc
Confidence               66899999999999764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.86  E-value=0.52  Score=28.57  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 025965          175 ARGLGASLQRQGKYREAIKYHSMVLQISER  204 (245)
Q Consensus       175 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~~~  204 (245)
                      +...+.-+...|+|++||+++++|.....+
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            444555566666666666666666555443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.19  E-value=0.49  Score=28.66  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 025965          210 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  243 (245)
Q Consensus       210 ~~~~a~~~la~~y~~~g~~~~A~~~y~~al~~~~  243 (245)
                      +.+.-+...|.-+...|.||+|++++++|...+.
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            5667788889999999999999999999988764

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.31  E-value=0.74  Score=28.79  Aligned_cols=39  Identities=10%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 025965          126 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  164 (245)
Q Consensus       126 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  164 (245)
                      ++....+..+...|.-+...|+|++|+.+|.+|+++.-.
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            556667778888888888899999999999888876654