Citrus Sinensis ID: 025974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEccccccccccccccHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEcccccHHHccccccEEEEEccccccccHHHHHHHHHHHHHcccccccccccccccEEccccccccEEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHcccccccccccccEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEcccccEcEEEEEEccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msesrsqsqnmasisplhtwsqrphhasftafsnnkgtnqyKKQFVFCCKKQEQEDDARTLNRFrieeqdddsrTKRREVMFQLAFTACSFPAIVSYALAAndwqlgagepngfksitafypqeassssVSVVITGlgpdftrmesfgKVEAFADTLVSGldrswrrppgvaaklidckaskgfYYIEYtlqnpgesRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Flexible Loop (DISEMBL)
msesrsqsqNMASisplhtwsqrPHHASFTAFSNNKGTNQYKKQFVFCCKKQeqeddartlnrfrieeqdddsrtkRREVMFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYpqeassssVSVVITGLGPDFTRMESFGKVEAFADTLVSgldrswrrppgvaaKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEeesekygsniekavasfrfi
Low Complexity Region (SEG)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered region (IsUnstruct)
*************************************TNQYKKQFVFCCK****************************EVMFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEA**SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVE********************
Disordered Region (DISOPRED)
***************PLHTW**********************************************************EVMFQLAFTACSFPAIVSYALAANDWQLGAG*PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVS****************IDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISEMBL)
*************ISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISPRO)
**************S*LHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q9S720	247	PsbP domain-containing pr	yes	no	0.910	0.902	0.548	5e-69

>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2

 Score =  260 bits (665), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 168/259 (64%), Gaps = 36/259 (13%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALA----------------------ANDWQL 106
           +D     KRR+VM Q+A +    P  +S A A                        DWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 107 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 166
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 167 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 226
           +P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 227 ESEKYGSNIEKAVASFRFI 245
           ES +  S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,766,744
Number of Sequences: 539616
Number of extensions: 3556024
Number of successful extensions: 7961
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7959
Number of HSP's gapped (non-prelim): 4
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
255539324	264	conserved hypothetical protein [Ricinus	0.910	0.844	0.600	5e-76
225457650	253	PREDICTED: psbP domain-containing protei	0.922	0.893	0.568	2e-73
449458059	257	PREDICTED: psbP domain-containing protei	0.706	0.673	0.678	8e-71
188509930	274	unknown predicted protein [Gossypioides	0.697	0.624	0.678	6e-70
147809819	247	hypothetical protein VITISV_030793 [Viti	0.893	0.886	0.556	2e-69
449522159	188	PREDICTED: psbP domain-containing protei	0.673	0.877	0.691	6e-69
224083366	193	predicted protein [Populus trichocarpa]	0.665	0.844	0.681	4e-68
21537211	247	thylakoid lumen protein, chloroplast pre	0.910	0.902	0.548	3e-67
18411110	247	PsbP domain-containing protein 3 [Arabid	0.910	0.902	0.548	3e-67
297839519	225	hypothetical protein ARALYDRAFT_476802 [	0.767	0.835	0.622	7e-67

>gi|255539324|ref|XP_002510727.1| conserved hypothetical protein [Ricinus communis] gi|223551428|gb|EEF52914.1| conserved hypothetical protein [Ricinus communis]

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/253 (60%), Positives = 181/253 (71%), Gaps = 30/253 (11%)

Query: 15  SPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDAR--TLNRFRIEEQDDD 72
           +PLH    +P+  +F + S +   N  +KQ + CC     ++D       RFR++E    
Sbjct: 20  TPLHLL--KPN-LNFLSASPSFRFNSCRKQHLPCCTNSFPDEDQHQPLFCRFRLQEP--- 73

Query: 73  SRTKRREVMFQLAFT-ACSFPAIVSYALA-------------------ANDWQLGAGEPN 112
               RRE +F +AFT   +FP ++S A A                     DW++GAGEPN
Sbjct: 74  --YGRREALFSVAFTTGFTFPGLISNAFAEIDDFRLYTDDANKFQISIPQDWRVGAGEPN 131

Query: 113 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 172
           GFKS+TAFYP+EAS SSVSVVITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+RPPGVA
Sbjct: 132 GFKSVTAFYPEEASGSSVSVVITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQRPPGVA 191

Query: 173 AKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYG 232
           AKLIDCKA+KG YYIEYTLQNPGE RKHLFSA+GMA NGWYNRLYTVTGQFVEEESE YG
Sbjct: 192 AKLIDCKATKGIYYIEYTLQNPGEGRKHLFSALGMAFNGWYNRLYTVTGQFVEEESENYG 251

Query: 233 SNIEKAVASFRFI 245
           S ++K V+SF+FI
Sbjct: 252 SKVQKVVSSFKFI 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457650|ref|XP_002273332.1| PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera] gi|297745601|emb|CBI40766.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/262 (56%), Positives = 181/262 (69%), Gaps = 36/262 (13%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFR 65
           MA   PL     R     F+A+S+ KG         KKQ V  CK + +E++  +   F 
Sbjct: 1   MALYFPLPL---RSGSCDFSAYSSKKGYGSRTGKCGKKQRVVFCKNENKEEEKTS---FG 54

Query: 66  IEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA----------------------AND 103
           I+EQ    R   REV+ Q+ F+  S  AIV  ALA                        D
Sbjct: 55  IKEQHGGGR---REVVLQMVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQD 111

Query: 104 WQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 163
           WQ+G+GEP+GFKS+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDR
Sbjct: 112 WQVGSGEPSGFKSVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDR 171

Query: 164 SWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 223
           SW+RPPG+AAKLIDC+A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ+
Sbjct: 172 SWQRPPGIAAKLIDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQY 231

Query: 224 VEEESEKYGSNIEKAVASFRFI 245
           +EEESEK+ S IEK VASFRFI
Sbjct: 232 LEEESEKFSSKIEKVVASFRFI 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458059|ref|XP_004146765.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 133/196 (67%), Positives = 151/196 (77%), Gaps = 23/196 (11%)

Query: 73  SRTKRREVMFQLAFTACSFPAIVSYALA---------------AN--------DWQLGAG 109
           S   RRE+M  + FTA SF  + S ALA               AN        DWQ+G G
Sbjct: 62  SGVNRREIMLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNG 121

Query: 110 EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP 169
           EPNGFKS+TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPP
Sbjct: 122 EPNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPP 181

Query: 170 GVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESE 229
           GVAAKLIDC++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE
Sbjct: 182 GVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESE 241

Query: 230 KYGSNIEKAVASFRFI 245
            Y S IEK V SF FI
Sbjct: 242 SYSSKIEKVVNSFAFI 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509930|gb|ACD56619.1| unknown predicted protein [Gossypioides kirkii]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 135/199 (67%), Positives = 153/199 (76%), Gaps = 28/199 (14%)

Query: 67  EEQDDD---SRTKRREVMFQLAFTACSFP-AIVSYALAA--------------------- 101
           E ++DD   + T+RR+ + Q    A SFP  I+S A+A                      
Sbjct: 46  EMKEDDGHATSTRRRQFILQAPLIAFSFPQLIMSTAIAVAEIDVPQDFRVYTDEQNKFKI 105

Query: 102 ---NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLV 158
               DWQ+GAGEPN FKSITAFYP+E ++S+VSV ITGLGPDFTRMESFGKV+AFADTLV
Sbjct: 106 FIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLV 165

Query: 159 SGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT 218
           SGLDRSW+RPPGVAAKLIDCKA+ GFYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYT
Sbjct: 166 SGLDRSWQRPPGVAAKLIDCKAANGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYT 225

Query: 219 VTGQFVEEESEKYGSNIEK 237
           VTGQFVEEE+EKYGS IEK
Sbjct: 226 VTGQFVEEEAEKYGSRIEK 244

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809819|emb|CAN64877.1| hypothetical protein VITISV_030793 [Vitis vinifera]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/255 (55%), Positives = 174/255 (68%), Gaps = 36/255 (14%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFR 65
           MA   PL     R     F+A+S+ KG         KKQ V  CK + +E++  +   F 
Sbjct: 1   MALYFPLPL---RSGSCDFSAYSSKKGCGSRTGKCGKKQRVVFCKNENKEEEKTS---FG 54

Query: 66  IEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA----------------------AND 103
           I+EQ    R   REV+ Q+ F+  S  AIV  ALA                        D
Sbjct: 55  IKEQHGGGR---REVVLQIVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQD 111

Query: 104 WQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 163
           WQ+G+GEP+GFKS+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDR
Sbjct: 112 WQVGSGEPSGFKSVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDR 171

Query: 164 SWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 223
           SW+RPPG+AAKLIDC+A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ+
Sbjct: 172 SWQRPPGIAAKLIDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQY 231

Query: 224 VEEESEKYGSNIEKA 238
           +EEESEK+ S IEK 
Sbjct: 232 LEEESEKFSSKIEKV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522159|ref|XP_004168095.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 130/188 (69%), Positives = 147/188 (78%), Gaps = 23/188 (12%)

Query: 81  MFQLAFTACSFPAIVSYALA---------------AN--------DWQLGAGEPNGFKSI 117
           M  + FTA SF  +VS ALA               AN        DWQ+G GEPNGFKS+
Sbjct: 1   MLGIGFTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 60

Query: 118 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 177
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 61  TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 120

Query: 178 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 237
           C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 121 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 180

Query: 238 AVASFRFI 245
            V SF FI
Sbjct: 181 VVNSFAFI 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083366|ref|XP_002306998.1| predicted protein [Populus trichocarpa] gi|222856447|gb|EEE93994.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 146/185 (78%), Gaps = 22/185 (11%)

Query: 75  TKRREVMFQLAFTACSFPAIVSYALAAND----------------------WQLGAGEPN 112
           TKRRE +F + FTA +FPAI S ALAA                        WQ+GAGEP+
Sbjct: 2   TKRREALFNMVFTAFTFPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPS 61

Query: 113 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 172
           G+KS+TAFYP+EAS+SSVSVVITGLGPDFTR+ESFGKV+AFA+TLV GLDRSW+RPPGVA
Sbjct: 62  GYKSVTAFYPEEASNSSVSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQRPPGVA 121

Query: 173 AKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYG 232
           AKLID KA+ G YYIEYTLQNPGESR+HL SA+G+  NGWYNRLYTVTGQFV+EESEK+G
Sbjct: 122 AKLIDSKAANGLYYIEYTLQNPGESRRHLLSALGVTFNGWYNRLYTVTGQFVDEESEKFG 181

Query: 233 SNIEK 237
           + I K
Sbjct: 182 TEIRK 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 168/259 (64%), Gaps = 36/259 (13%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALA----------------------ANDWQL 106
           +D     KRR+VM Q+A +    P  +S A A                        DWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 107 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 166
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 167 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 226
           +P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 227 ESEKYGSNIEKAVASFRFI 245
           ES +  S I+K V SFRFI
Sbjct: 229 ESSEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411110|ref|NP_565131.1| PsbP domain-containing protein 3 [Arabidopsis thaliana] gi|18203439|sp|Q9S720.2|PPD3_ARATH RecName: Full=PsbP domain-containing protein 3, chloroplastic; AltName: Full=OEC23-like protein 2; Flags: Precursor gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana] gi|110742837|dbj|BAE99317.1| hypothetical protein [Arabidopsis thaliana] gi|332197723|gb|AEE35844.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 168/259 (64%), Gaps = 36/259 (13%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALA----------------------ANDWQL 106
           +D     KRR+VM Q+A +    P  +S A A                        DWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 107 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 166
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 167 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 226
           +P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 227 ESEKYGSNIEKAVASFRFI 245
           ES +  S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839519|ref|XP_002887641.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata] gi|297333482|gb|EFH63900.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 152/212 (71%), Gaps = 24/212 (11%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA--------------AN 102
           D+    + RI  +D     KRRE M Q+A +    P  VS A A              AN
Sbjct: 15  DSSNEEQHRISSRDHVG-IKRREAMLQIASSVFFLPLAVSPAFAETNASEAFRVYTDEAN 73

Query: 103 ---------DWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF 153
                    DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAF
Sbjct: 74  KFEISIPQEDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAF 133

Query: 154 ADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWY 213
           A+TLVSGLDRSW++P GV AKLID ++SKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWY
Sbjct: 134 AETLVSGLDRSWQKPAGVTAKLIDSRSSKGFYYIEYTLQNPGEARKHLYSAIGMATNGWY 193

Query: 214 NRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 245
           NRLYTVTGQF +EES +  S I+K V SFRFI
Sbjct: 194 NRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	0.583	0.578	0.804	6.8e-65

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 115/143 (80%), Positives = 129/143 (90%)

Query:   103 DWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD 162
             DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLD
Sbjct:   105 DWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLD 164

Query:   163 RSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQ 222
             RSW++P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQ
Sbjct:   165 RSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQ 224

Query:   223 FVEEESEKYGSNIEKAVASFRFI 245
             F +EES +  S I+K V SFRFI
Sbjct:   225 FTDEESAEQSSKIQKTVKSFRFI 247

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S720	PPD3_ARATH	No assigned EC number	0.5482	0.9102	0.9028	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam01789	163	pfam01789, PsbP, PsbP	3e-07

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 126 SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG-LDRSWRRPPGV--AAKLIDCKA-- 180
           S  +VSVVI+ +    + +E  G  E   + L+ G L      P G    A+L++     
Sbjct: 47  SDENVSVVISPVDKKKS-LEDLGSPEEVGERLLRGVLA-----PEGSGREAELLEASERE 100

Query: 181 --SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 238
              K +Y +EY ++      +H  + +     G   +LYT+  Q  E+   K     E+ 
Sbjct: 101 VDGKTYYDLEYLVRLADGGDRHELATVT-VDRG---KLYTLAAQTNEKRWFKVKKLFERV 156

Query: 239 VASFRF 244
           V SF  
Sbjct: 157 VDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.97
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.95
PLN03152	241	hypothetical protein; Provisional	99.93
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.37
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	95.05
COG5435	147	Uncharacterized conserved protein [Function unknow	82.16

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=1.6e-37  Score=281.77  Aligned_cols=134  Identities=19%  Similarity=0.347  Sum_probs=118.2

Q ss_pred             cCcc--cccccCCcceeEEEecCCCCCCceEEEEEecCCC-CccccccCCChHHHHHHHhhccccCC---CCCCCCceEE
Q 025974          102 NDWQ--LGAGEPNGFKSITAFYPQEASSSSVSVVITGLGP-DFTRMESFGKVEAFADTLVSGLDRSW---RRPPGVAAKL  175 (245)
Q Consensus       102 ~~W~--~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~-DftsL~sfG~p~eVae~Lv~~v~rs~---~appg~~AkL  175 (245)
                      .||+  .+.|.|..|||++      +.+|||||+|++++. ++++|++||+|+||||+|+++++.+.   +.+.|++++|
T Consensus       125 ~GWi~V~~~G~DVvFrD~I------e~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeL  198 (286)
T PLN00059        125 QNWIQVRGAGADIFFRDPV------VLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANI  198 (286)
T ss_pred             CCCeEeccCCCceEEeccC------ccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEE
Confidence            8999  4778898999987      999999999999974 46899999999999999999987321   1224799999


Q ss_pred             Eeceec-----cceEEEEEEEeCCC----------------CCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHH
Q 025974          176 IDCKAS-----KGFYYIEYTLQNPG----------------ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN  234 (245)
Q Consensus       176 IdA~~r-----k~YY~lEYtvq~P~----------------~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~  234 (245)
                      |+|.+|     +.||+|||++++|+                ++.||++|+|+|.|    ||||||++|+||+||+|+++.
T Consensus       199 VsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~n----GkLYTL~~qtpE~RW~kvk~~  274 (286)
T PLN00059        199 LSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEN----DRLYSIRLQTPEKVFLEEEKD  274 (286)
T ss_pred             EEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeC----CEEEEEEcCCcHHHHHHHHHH
Confidence            999999     56999999999972                23899999999988    599999999999999999999


Q ss_pred             HHHHhcceeeC
Q 025974          235 IEKAVASFRFI  245 (245)
Q Consensus       235 f~~vVdSF~v~  245 (245)
                      |++|++||+|+
T Consensus       275 f~~V~dSF~V~  285 (286)
T PLN00059        275 LRRVMDSFRVE  285 (286)
T ss_pred             HHHHHhheeec
Confidence            99999999985

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3.1e-33  Score=252.63  Aligned_cols=131  Identities=20%  Similarity=0.269  Sum_probs=107.9

Q ss_pred             cCcc---c--ccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHH----HHHHHhhccccCC-C----C
Q 025974          102 NDWQ---L--GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEA----FADTLVSGLDRSW-R----R  167 (245)
Q Consensus       102 ~~W~---~--~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~e----Vae~Lv~~v~rs~-~----a  167 (245)
                      ++|+   +  ..|++..|+|.+      +.++||||+|+|+  |+++|++||+|+|    |++.|.+.+.... .    .
T Consensus       106 ~~W~~~ke~~~~G~dv~f~D~~------~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf  177 (260)
T PLN00042        106 SKWNPSKEREFPGQVLRFEDNF------DATSNLSVMVTPT--DKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGF  177 (260)
T ss_pred             CCCccccccccCCceEEeeccc------cccccEEEEEecC--CcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCc
Confidence            8997   2  236666777765      8999999999988  4579999999999    7878887764221 0    0


Q ss_pred             CCCC--ceEEEeceec----cceEEEEEEEeCCC--CCceeEEEEEEeecCCccceEEEEeccccchhhHHH-HHHHHHH
Q 025974          168 PPGV--AAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKA  238 (245)
Q Consensus       168 ppg~--~AkLIdA~~r----k~YY~lEYtvq~P~--~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kv-k~~f~~v  238 (245)
                      .|++  +|+||++++|    ++||+|||.+++|+  +..||+|++|+|.+    ||||||++|+||+||.|+ ++.|+.|
T Consensus       178 ~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~----GkLYtl~aqa~EkRW~K~~~k~l~~v  253 (260)
T PLN00042        178 DANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSD----GKLYICKAQAGDKRWFKGARKFVEGA  253 (260)
T ss_pred             CcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEEC----CEEEEEEecCchhhhhHHHHHHHHHH
Confidence            1332  7899999999    67999999999996  35799999999976    599999999999999998 6689999


Q ss_pred             hcceee
Q 025974          239 VASFRF  244 (245)
Q Consensus       239 VdSF~v  244 (245)
                      ++||+|
T Consensus       254 ~~SFsV  259 (260)
T PLN00042        254 ASSFSV  259 (260)
T ss_pred             Hhceec
Confidence            999997

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=4.3e-32  Score=245.27  Aligned_cols=114  Identities=14%  Similarity=0.160  Sum_probs=102.6

Q ss_pred             EecCCCCCCceEEEEEecCC-----CCccccccCCChHHHHHHHhhccccCCCCCCCCceEEEeceec----cceEEEEE
Q 025974          119 AFYPQEASSSSVSVVITGLG-----PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEY  189 (245)
Q Consensus       119 AF~P~~~~~eNVSVVITpv~-----~DftsL~sfG~p~eVae~Lv~~v~rs~~appg~~AkLIdA~~r----k~YY~lEY  189 (245)
                      .|..  +.++||||||+||+     +| ++|++||+|++|+++|.+.++    .++++.++||||.+|    ++||+|||
T Consensus       141 ~F~D--~~dgnVSVIVSPV~r~t~k~~-~sIeDlGsPeeVl~~Lg~~v~----g~~~~~~eLLeAs~re~dGktYY~~E~  213 (263)
T PLN00067        141 KFED--EKQGKVQVVASPLIRLTNKPN-ATIEEIGSPEKLIASLGPFVT----GNSYDPDELLETSVEKIGDQTYYKYVL  213 (263)
T ss_pred             EEeC--CCCCCEEEEEecccccccCCC-CChHHccCHHHHHHHhhHHhh----cCCCCCcceEEeeeEeeCCeEEEEEEE
Confidence            4543  55889999999984     45 699999999999999999987    568999999999999    67999999


Q ss_pred             EEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceee
Q 025974          190 TLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  244 (245)
Q Consensus       190 tvq~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v  244 (245)
                      .+..+++ .||+|+++++.+    |||||+++|+||+||.|+++.|++|++||+|
T Consensus       214 ~tp~a~~-gRHnLataTV~~----GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        214 ETPFALT-GSHNLAKATAKG----NTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             EecCCCC-CceEEEEEEEEC----CEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            9999985 799999988865    5999999999999999999999999999986

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.97  E-value=4e-32  Score=227.88  Aligned_cols=132  Identities=32%  Similarity=0.502  Sum_probs=112.6

Q ss_pred             cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCCCCceEEEeceec
Q 025974          102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS  181 (245)
Q Consensus       102 ~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~appg~~AkLIdA~~r  181 (245)
                      +||....+  .|  ..+.|.++...++||+|+|+|++.+| +|++||+|++||++|++.++++  ...++.++||++.+|
T Consensus        39 ~gW~~~~~--~G--~~v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~va~~l~~~~~~~--~~~~~~a~li~a~~~  111 (175)
T PF01789_consen   39 SGWEEVDV--SG--ADVVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEEVAERLLNGELAS--PGSGREAELISASER  111 (175)
T ss_dssp             TTEEEEES--TT--EEEEEEETTETTSEEEEEEEE-STS--SGGGG-SHHHHHHHHHHHCCCH--CTSSEEEEEEEEEEE
T ss_pred             CCCeecCC--CC--eEEEEECcccccceEEEEEEecCCcC-chhhcCCHHHHHHHHhhhhccc--ccCCcceEEEEeeee
Confidence            89975444  34  34578999999999999999999997 9999999999999999998733  112399999999999


Q ss_pred             ----cceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceee
Q 025974          182 ----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  244 (245)
Q Consensus       182 ----k~YY~lEYtvq~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v  244 (245)
                          +.||+|||+++.|++..||+++++++.+    ||||||++|+||+||+|+++.|++|++||+|
T Consensus       112 ~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~----g~lY~l~~~a~e~~w~k~~~~l~~iv~SF~v  174 (175)
T PF01789_consen  112 EVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKN----GKLYTLTAQAPESRWDKVEPKLRKIVDSFRV  174 (175)
T ss_dssp             EETTEEEEEEEEEEEETTEEEEEEEEEEEEET----TEEEEEEEEEEHHHHHTCHHHHHHHHHC-EE
T ss_pred             ecCCccEEEEEEEeccCCCcccEEEEEEEEEC----CEEEEEEEEcCHHHHHHHHHHHHHHHhcEEe
Confidence                4699999999999866899999999975    5999999999999999999999999999997

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.95  E-value=9e-28  Score=217.56  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=95.3

Q ss_pred             CCCceEEEEEecCC------CCccccccCCChHHHHHHHhhccccCCCCCCCCceEEEeceec----cceEEEEEEEeCC
Q 025974          125 ASSSSVSVVITGLG------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNP  194 (245)
Q Consensus       125 ~~~eNVSVVITpv~------~DftsL~sfG~p~eVae~Lv~~v~rs~~appg~~AkLIdA~~r----k~YY~lEYtvq~P  194 (245)
                      ..++||+|+|+|++      .+.++|++||+|++|++.|.+.++    .++.+.++||++.++    ++||.|||     
T Consensus       145 ~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~----g~~~~e~eLl~a~~re~dGktYY~~E~-----  215 (262)
T PLN00066        145 DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELI----GEPVEEGKVLSMEVAEHSGRTYYQFEL-----  215 (262)
T ss_pred             CCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhc----CCCccccceeEeeeeecCCcEEEEEEE-----
Confidence            57899999999996      244799999999999999999876    557789999999998    67999999     


Q ss_pred             CCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceeeC
Q 025974          195 GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  245 (245)
Q Consensus       195 ~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v~  245 (245)
                         .||+|++|+|.+    ||||||++|+||+||.|+++.|+.|++||+|+
T Consensus       216 ---~rH~LasaTV~~----GrLYt~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        216 ---PPHTLVTATAAG----NRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             ---eCceEEEEEEEC----CEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence               289999999986    59999999999999999999999999999985

>PLN03152 hypothetical protein; Provisional

Probab=99.93  E-value=3.4e-26  Score=203.91  Aligned_cols=103  Identities=20%  Similarity=0.343  Sum_probs=86.4

Q ss_pred             CCCCceEEEEEecCC-------CCccccccCCChHHHHHHHhhccccCCCCCCC---CceEEEecee-c--cceEEEEEE
Q 025974          124 EASSSSVSVVITGLG-------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPG---VAAKLIDCKA-S--KGFYYIEYT  190 (245)
Q Consensus       124 ~~~~eNVSVVITpv~-------~DftsL~sfG~p~eVae~Lv~~v~rs~~appg---~~AkLIdA~~-r--k~YY~lEYt  190 (245)
                      ...+|||||+|+|++       .+ ++|.+||+|+|||+.|+.         +|   +.++.++.++ .  |+||+|||.
T Consensus       126 ~D~sEnVSVVIspv~~LK~tfle~-kDLtDLGsp~EVgkv~vP---------~g~~~~saR~iel~~E~dGKtYY~lEy~  195 (241)
T PLN03152        126 PDGSEVLSVVIRPSNQLKITFLEA-KDITDLGSLKEAAKIFVP---------GGATLYSARTIKVKEEEGIRTYYFYEFG  195 (241)
T ss_pred             CCCCceEEEEEecCcccccccccc-CChhHcCCHHHHHHhhCC---------CcccccccceeeeeeecCCceeEEEEEE
Confidence            345899999999997       55 899999999999977753         22   1344444332 2  789999999


Q ss_pred             EeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceeeC
Q 025974          191 LQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  245 (245)
Q Consensus       191 vq~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v~  245 (245)
                      ++     .||++++|+|.+    |||||+++|++|+||+|++++|+++++||+|+
T Consensus       196 v~-----~RH~LaTVaVsr----GKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        196 RD-----EQHVALVATVNS----GKAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             eC-----CcEEEEEEEEcC----CeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            86     599999999987    59999999999999999999999999999986

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.37  E-value=0.0046  Score=49.29  Aligned_cols=114  Identities=16%  Similarity=0.212  Sum_probs=74.2

Q ss_pred             ccee--EEEecCCCC--CCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCCCCceEEEeceec----cce
Q 025974          113 GFKS--ITAFYPQEA--SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGF  184 (245)
Q Consensus       113 g~k~--V~AF~P~~~--~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~appg~~AkLIdA~~r----k~Y  184 (245)
                      |++|  +.+|-++..  ...|+.|.-.+++++       .+.++..++.++.+-+     --..-++++.+.-    ..-
T Consensus         9 ~~~D~t~nv~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~-----~l~~~~~~~~~~~~l~~~~a   76 (130)
T PF08786_consen    9 GWQDRTMNVLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRK-----QLPGFQLVERQPITLGGRPA   76 (130)
T ss_dssp             TSEE--BEEEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHC-----CSTT-EEEEEEEEEETTEEE
T ss_pred             cceeceEEEEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHh-----hCCCcEEEeeEEEEeCCCCe
Confidence            4444  345544433  356666666677776       3678888888887631     1223344443333    368


Q ss_pred             EEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcce
Q 025974          185 YYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF  242 (245)
Q Consensus       185 Y~lEYtvq~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF  242 (245)
                      +.+||+...++. .-|-.-++.+-. |  +++|+||..++..-.+..+..++.+++||
T Consensus        77 ~~l~~~~~~~g~-~v~Q~q~~~~~~-~--~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   77 RELEYSFRSGGQ-PVYQRQAAVLLP-G--RRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEEEEEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             EEEEEEEeeCCE-EEEEEEEEEEEC-C--CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            999999998885 566666655433 2  59999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=95.05  E-value=0.69  Score=40.35  Aligned_cols=129  Identities=16%  Similarity=0.117  Sum_probs=85.4

Q ss_pred             cCccc-ccccCCcceeEEEecCC-CCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCCCCceEEEece
Q 025974          102 NDWQL-GAGEPNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCK  179 (245)
Q Consensus       102 ~~W~~-~~G~~sg~k~V~AF~P~-~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~appg~~AkLIdA~  179 (245)
                      .||+. ........-.+++.-.. +.-..|+-|++..+..||       +|+|+.+.=-..+.    .-||-+  .+++.
T Consensus        39 ~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~~----~l~g~~--~~~~s  105 (175)
T PF10738_consen   39 PGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADAQ----NLPGFR--ELDGS  105 (175)
T ss_pred             cCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhHh----hCcCcc--cccCC
Confidence            89994 55556566677766552 233789999999998887       46666553322221    224444  33332


Q ss_pred             ec--c--ceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceee
Q 025974          180 AS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  244 (245)
Q Consensus       180 ~r--k--~YY~lEYtvq~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v  244 (245)
                      .-  .  .-+.+|.+-..++- +||...-+.|.-++-.--|..||+++.+..-....+..+.|++.|+|
T Consensus       106 ~~~~~GfpS~~i~GtY~~~g~-~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~I  173 (175)
T PF10738_consen  106 PSDFSGFPSSQIEGTYDKDGM-RLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTI  173 (175)
T ss_pred             ccccCCCceeEEEEEEeeCCE-EeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence            22  2  25788866666663 67776664444434334677899999999999999999999999997

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=82.16  E-value=15  Score=31.82  Aligned_cols=120  Identities=17%  Similarity=0.278  Sum_probs=74.2

Q ss_pred             CCccee--EEEecCCCCCCceEEEEEe--cCCCCccccccCCChHHHHHHHhhccccCCCCCCCCceEEEe-ceec-cce
Q 025974          111 PNGFKS--ITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID-CKAS-KGF  184 (245)
Q Consensus       111 ~sg~k~--V~AF~P~~~~~eNVSVVIT--pv~~DftsL~sfG~p~eVae~Lv~~v~rs~~appg~~AkLId-A~~r-k~Y  184 (245)
                      +.+++|  |-+|--+.....-+|.+||  ++++| .      +-.++.++.|..+-+   .=||-+.+=-. ..-- .--
T Consensus        14 P~~w~DrSvNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k---~Lpgy~~~~~~e~~v~~~aa   83 (147)
T COG5435          14 PAAWQDRSVNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRK---QLPGYELHHRREIEVGGAAA   83 (147)
T ss_pred             cchhccceEEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHh---hCCCeEEeeccccccCcccc
Confidence            445555  4456555555667777777  45444 2      346677777776531   11332222111 0000 235


Q ss_pred             EEEEEEEeCC-CCCceeEEEE-EEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceee
Q 025974          185 YYIEYTLQNP-GESRKHLFSA-IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  244 (245)
Q Consensus       185 Y~lEYtvq~P-~~~~RH~la~-Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v  244 (245)
                      -.+||.-+.| .++ |-.... +.+.++   .++-+||+.++-.--++-+.....+|.||..
T Consensus        84 ~~~~y~w~~~~~~~-r~v~q~~~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          84 PLLDYQWTSPEGEQ-RRVQQRQVFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             ceeEEEeecCCCCC-ceEEEEEeecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence            6677777775 443 444333 455554   6999999999999999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	1e-18
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	9e-14
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	4e-07

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 79.5 bits (195), Expect = 1e-18
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 11/146 (7%)

Query: 102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 161
           N W     +         F        ++SV+I+ +  D T +   G         +  +
Sbjct: 30  NGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLGTATDVGYRFMKTV 88

Query: 162 DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLY 217
           +          A+LI+ +A     + +Y +EY +       +H  +++         +L 
Sbjct: 89  ND--ASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRG----KLI 142

Query: 218 TVTGQFVEEESEKYGSNIEKAVASFR 243
           T      E+  +   S  +   +SF 
Sbjct: 143 TFDLSTAEDRWDTVKSLFDTVASSFH 168

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 66.0 bits (160), Expect = 9e-14
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 161
             W     E         F+    ++ +VSVV+  +    + +E  G  E   D L+  +
Sbjct: 24  RGWVQVQVEDPVDVV---FHDIIETTENVSVVVNTVASTKS-LEELGSPEEVGDRLLRNI 79

Query: 162 DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWY 213
                   G ++ LI   +     K +Y +EY +  PG      ++H  S+I ++     
Sbjct: 80  IA--PSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRG--- 134

Query: 214 NRLYTVTGQFVEEESEKYGSNIEKAVASFR 243
            ++YT++    EE   K     +  V+SF 
Sbjct: 135 -KVYTLSVSAPEERWPKVEDQFKTIVSSFT 163

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 24/152 (15%)

Query: 110 EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW---- 165
           E      +  F     ++S+V V IT    D   +  FG  E F   +   L R      
Sbjct: 30  EVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSITDFGSPEQFLSQVDYLLGRQAYSGK 87

Query: 166 -------RRPPGVAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGW 212
                         A +++   +    K +YY+    +     E  KH      +     
Sbjct: 88  TDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDG-- 145

Query: 213 YNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 243
             +LY    Q  ++   K     +E    SF 
Sbjct: 146 --KLYICKAQAGDKRWFKGAKKFVENTATSFS 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.97
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.93
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.95
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	97.25
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	96.29

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.97  E-value=1.2e-29  Score=208.57  Aligned_cols=132  Identities=25%  Similarity=0.427  Sum_probs=114.9

Q ss_pred             cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCC--CCceEEEece
Q 025974          102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDCK  179 (245)
Q Consensus       102 ~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~app--g~~AkLIdA~  179 (245)
                      ++|...... .  ...+.|.|+....+||+|+|+|+++ +++|++||+|++||+.|++...    ++|  ++.++||++.
T Consensus        24 ~~W~~~~~~-~--g~~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~----~~~~~~~~~~l~~a~   95 (165)
T 2xb3_A           24 RGWVQVQVE-D--PVDVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNII----APSESGRSSALIAAT   95 (165)
T ss_dssp             TTEEEECCC-T--TEEEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTT----SCTTSSCEEEEEEEE
T ss_pred             CCCeEecCC-C--CceEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhh----cCCCCCcceEEEEee
Confidence            799964431 1  2467899998889999999999987 4799999999999999999865    444  7999999999


Q ss_pred             ec----cceEEEEEEEeCCC----CCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceeeC
Q 025974          180 AS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  245 (245)
Q Consensus       180 ~r----k~YY~lEYtvq~P~----~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v~  245 (245)
                      +|    +.||+|||+++.|+    +..||+|+++++.+    ||||||++|+||++|+|+++.|++|++||+|+
T Consensus        96 ~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~----g~lY~l~~sape~~w~~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A           96 SQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEET----TEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred             eeecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC----CEEEEEEEecCHHHhHHHHHHHHHHHhhEEeC
Confidence            98    56999999999998    35899999999974    59999999999999999999999999999986

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.93  E-value=3.5e-31  Score=220.43  Aligned_cols=135  Identities=16%  Similarity=0.248  Sum_probs=118.5

Q ss_pred             cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCC--CCceEEEece
Q 025974          102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDCK  179 (245)
Q Consensus       102 ~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~app--g~~AkLIdA~  179 (245)
                      +||...++..++....++|.++...++||+|+|+|++.+ ++|++||+|++||++|++.+.    ++|  ++.++||++.
T Consensus        30 ~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~~~----~~~~~~~~a~li~a~  104 (170)
T 2lnj_A           30 NGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKTVN----DASQGDRQAELINAE  104 (170)
Confidence            899965544333345678999999999999999999886 799999999999999999865    444  8999999999


Q ss_pred             ec----cceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceeeC
Q 025974          180 AS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  245 (245)
Q Consensus       180 ~r----k~YY~lEYtvq~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v~  245 (245)
                      +|    +.||++||+++.|+...||.|+++++.+    ||||||++|+||++|+|.++.|++|++||+|+
T Consensus       105 ~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~----gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          105 ARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNR----GKLITFDLSTAEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            98    5699999999999445899999988864    59999999999999999999999999999985

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.95  E-value=1.5e-27  Score=202.06  Aligned_cols=136  Identities=21%  Similarity=0.279  Sum_probs=101.4

Q ss_pred             cCccccc-ccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCC-----C------
Q 025974          102 NDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRP-----P------  169 (245)
Q Consensus       102 ~~W~~~~-G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~ap-----p------  169 (245)
                      ++|.... -...|  -.+.|..+...++||+|+|+|++.  ++|++||+|++|++.+...+.+..++|     +      
T Consensus        23 ~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~~~--~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~   98 (177)
T 1v2b_A           23 SKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPTDK--KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDA   98 (177)
T ss_dssp             TTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEECSC--SSGGGGCSHHHHHHHTGGGC------------------C
T ss_pred             CCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCCCC--CChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCc
Confidence            6898211 11122  235666667889999999999954  799999999996444433332222232     2      


Q ss_pred             CCceEEEeceec----cceEEEEEEEeCCCC--CceeEEEEEEeecCCccceEEEEeccccchhhHHH-HHHHHHHhcce
Q 025974          170 GVAAKLIDCKAS----KGFYYIEYTLQNPGE--SRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVASF  242 (245)
Q Consensus       170 g~~AkLIdA~~r----k~YY~lEYtvq~P~~--~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kv-k~~f~~vVdSF  242 (245)
                      ++.++||+|.+|    +.||+|||.++.|+.  ..||+|++++|.+    ||||||++|+||+||+|. ++.|++|++||
T Consensus        99 ~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~----gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF  174 (177)
T 1v2b_A           99 VAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGDKRWFKGAKKFVENTATSF  174 (177)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEGGGCSTTTTHHHHHHHHTC
T ss_pred             ccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEEC----CEEEEEEEecCHHHhhhhHHHHHHHHHhhe
Confidence            388999999999    569999999999972  4799999999975    599999999999999995 99999999999


Q ss_pred             eeC
Q 025974          243 RFI  245 (245)
Q Consensus       243 ~v~  245 (245)
                      +|.
T Consensus       175 ~v~  177 (177)
T 1v2b_A          175 SLA  177 (177)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            983

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=97.25  E-value=0.0037  Score=50.35  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=74.2

Q ss_pred             EEEecCCC-CCC--ceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCCC-CceEEEeceec-cceEEEEEEE
Q 025974          117 ITAFYPQE-ASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG-VAAKLIDCKAS-KGFYYIEYTL  191 (245)
Q Consensus       117 V~AF~P~~-~~~--eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~appg-~~AkLIdA~~r-k~YY~lEYtv  191 (245)
                      +.+|+++. ...  .|+.|...++++|       .+.++..+.-++.+-+   .-|+ +...+-...-+ ..--.+||+-
T Consensus        24 ~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~---~l~~y~~~~~~~~~l~g~~a~~~e~~~   93 (148)
T 1tu1_A           24 INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEK---QLPGFKLHKRWDINIHGHAAVLLDYQW   93 (148)
T ss_dssp             BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHH---HSTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHh---hCcCcEEeeeEeEEEcCCcEEEEEEEE
Confidence            45555443 222  5666666677766       3566666665555421   1122 11111111112 2457888888


Q ss_pred             eCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceee
Q 025974          192 QNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  244 (245)
Q Consensus       192 q~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v  244 (245)
                      ..++. .+|-+-++.+-. +   ++|.||..++...|+..+..++.|++||++
T Consensus        94 ~~~g~-~~~Q~q~~~~~~-~---~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~  141 (148)
T 1tu1_A           94 QREGR-DLMLRQVFIERR-P---AVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (148)
T ss_dssp             EETTE-EEEEEEEEECCS-S---SEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             ccCCE-EEEEEEEEEEEC-C---eEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence            87774 799998866643 2   999999999999999999999999999985

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=96.29  E-value=0.11  Score=43.66  Aligned_cols=139  Identities=12%  Similarity=0.136  Sum_probs=90.5

Q ss_pred             cccchhhhHhHh------cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhcccc
Q 025974           90 SFPAIVSYALAA------NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR  163 (245)
Q Consensus        90 ~~p~~~~~a~Ae------~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~r  163 (245)
                      .||+.+-.|+.-      .||+......+ +=-+..=.|++.=..||-|.+..++.|+     |   ++.-..|-+.+. 
T Consensus         8 ~~ps~~fp~~p~~~v~~P~gWe~~~~~~~-~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~-   77 (161)
T 3lyd_A            8 RYPSTEFPALTGFTVPIPETWQPDPTMGT-QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRAT-   77 (161)
T ss_dssp             EESCSSSCCCCEEEEECCTTEEECTTSSS-SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHT-
T ss_pred             eCCccccCCCceeeccCCCCceEcCCCCc-eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHh-
Confidence            455444444432      89997655444 3222222223334789999999998885     1   444334433221 


Q ss_pred             CCCCCCCCceEEEeceec--cceEEEEEEEeCCCCCceeE--EEEEEeecCCccceEEEE--eccccchhhHHHHHHHHH
Q 025974          164 SWRRPPGVAAKLIDCKAS--KGFYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIEK  237 (245)
Q Consensus       164 s~~appg~~AkLIdA~~r--k~YY~lEYtvq~P~~~~RH~--la~Vav~~nG~~grLYTl--taq~~E~rW~Kvk~~f~~  237 (245)
                         +-|+.+-.-..-.+.  ..-|.+||.-..|.- ..+.  +.++.|.++|   ..|.+  |++|.+..-+.+.+.|++
T Consensus        78 ---~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~---v~~vv~lt~T~~~~q~~~~~~d~q~  150 (161)
T 3lyd_A           78 ---QLPDYAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPH---AVDIIQLTATCAGDQTADYWDTFRL  150 (161)
T ss_dssp             ---TSTTCEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSS---CEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred             ---hCCCcEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCC---EEEEEEEEEEeccccchHHHHHHHH
Confidence               225655444444444  348999999988875 4563  5667888764   66666  999999999999999999


Q ss_pred             HhcceeeC
Q 025974          238 AVASFRFI  245 (245)
Q Consensus       238 vVdSF~v~  245 (245)
                      |++|++|.
T Consensus       151 iv~sl~v~  158 (161)
T 3lyd_A          151 MHADLTVQ  158 (161)
T ss_dssp             HHHTCEEE
T ss_pred             HhheeEec
Confidence            99999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-14

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 25/160 (15%)

Query: 102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 161
           + W     E      +  F     ++S+V V IT    D   +  FG  E F   +   L
Sbjct: 17  SKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSITDFGSPEQFLSQVDYLL 73

Query: 162 DRSW-----------RRPPGVAAKLIDCKAS----KGFYYIEYTLQNP--GESRKHLFSA 204
            R                    A +++   +    K +YY+    +     E  KH    
Sbjct: 74  GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVT 133

Query: 205 IGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 243
             +       +LY    Q  ++   K     +E    SF 
Sbjct: 134 ATV----NDGKLYICKAQAGDKRWFKGAKKFVENTATSFS 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.96
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	97.99

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.96  E-value=2.9e-29  Score=206.73  Aligned_cols=136  Identities=21%  Similarity=0.279  Sum_probs=107.3

Q ss_pred             cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCC-----------CCC
Q 025974          102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRR-----------PPG  170 (245)
Q Consensus       102 ~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~a-----------ppg  170 (245)
                      +||... .+..+....+.|.++....+||+|+|+|+  ++++|++||+|+++++.+...+.+.+..           .++
T Consensus        17 ~~W~~~-~~~~~~g~d~~f~d~~~~~~nv~V~v~p~--~~~sl~~~G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1v2ba_          17 SKWNPN-KEVEYPGQVLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAV   93 (171)
T ss_dssp             TTCEEC-CCCCSTTEEEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC------------------CC
T ss_pred             CCCcee-cccCCCCceEEEeccccCCceEEEEEecC--CCcchhhccChHHHHHHHHHHHhhhhhccccccccccccccc
Confidence            799632 12233334567889889999999999987  4679999999999999988777655433           247


Q ss_pred             CceEEEeceec----cceEEEEEEEeCCC--CCceeEEEEEEeecCCccceEEEEeccccchhhHHH-HHHHHHHhccee
Q 025974          171 VAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVASFR  243 (245)
Q Consensus       171 ~~AkLIdA~~r----k~YY~lEYtvq~P~--~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kv-k~~f~~vVdSF~  243 (245)
                      +.++|++|.++    +.||+|||+++.|+  +..||+|++++|.+    ||||||++|+||++|+|. +..|++|++||+
T Consensus        94 ~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~----grLYtl~~~~pe~~w~~~~~~~l~~~v~SF~  169 (171)
T d1v2ba_          94 AIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGDKRWFKGAKKFVENTATSFS  169 (171)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEGGGCSTTTTHHHHHHHHTCE
T ss_pred             ceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeC----CEEEEEEEecCHHHhhhhhHHHHHHHHhceE
Confidence            89999999999    46999999999984  45799999999976    599999999999999985 667999999999


Q ss_pred             e
Q 025974          244 F  244 (245)
Q Consensus       244 v  244 (245)
                      |
T Consensus       170 v  170 (171)
T d1v2ba_         170 L  170 (171)
T ss_dssp             E
T ss_pred             e
Confidence            8

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.99  E-value=2.5e-05  Score=60.33  Aligned_cols=106  Identities=12%  Similarity=0.116  Sum_probs=77.6

Q ss_pred             CCCCCC--ceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCCCCceEEEeceec----cceEEEEEEEeCCC
Q 025974          122 PQEASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPG  195 (245)
Q Consensus       122 P~~~~~--eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~appg~~AkLIdA~~r----k~YY~lEYtvq~P~  195 (245)
                      |+....  -|+.|...+++++       .+++++.++.+..+-+. .  |+  -++++.+.-    ..-+.+||+-..++
T Consensus        30 ~~~~~~~~~~lvIsr~~l~~~-------~~l~~~~~~~~~~l~~~-l--~~--~~~~~~~~~~l~g~pa~~~~~t~~~~~   97 (144)
T d1tu1a_          30 PASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ-L--PG--FKLHKRWDINIHGHAAVLLDYQWQREG   97 (144)
T ss_dssp             CCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH-S--TT--CEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred             cCCCCCcceEEEEEeecCCCC-------CCHHHHHHHHHHHHHhh-C--CC--cEEEeeEecccCCCcEEEEEEEEeeCC
Confidence            544433  4565555566555       47889999998887422 1  22  456664443    35889999999888


Q ss_pred             CCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceee
Q 025974          196 ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  244 (245)
Q Consensus       196 ~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v  244 (245)
                      . ..|-.-++.+ .+   +++|+||..++...++..++.++++++||+.
T Consensus        98 ~-~v~Q~q~~~~-~~---~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p  141 (144)
T d1tu1a_          98 R-DLMLRQVFIE-RR---PAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (144)
T ss_dssp             E-EEEEEEEEEC-CS---SSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             E-eEEEEEEEEE-eC---CCEEEEEEecCCcCCHHHHHHHHHHHHhCcc
Confidence            5 6788777555 34   4889999999999999999999999999974