Citrus Sinensis ID: 025981

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSYV
Secondary Structure (PSIPRED)
ccEEEEEEccccEEEEEEEcccEEEEEccccHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEEcccEEEccccccHHHHHHHHHHcccccEEEEEcccccccccEEEEcccEEEEcccccHHHHHHHHHHHccEEEEEEEcccccEEEEEEEEcccEEEcccccHHHHHHHHHHcccccEEEEEEccccccEEEEEEEccEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcEccEccHHHHEEEccccEEEEccccHHHHHHHHHHHcccccEEEEcEccEccHHHHcEEcccEEEEEccccHHHHHHHHHHcccccEEEEEccccccHHHHEEEcccEEEEcccccHHHHHHHHHHHccEEEEccEccEccHHHcEEEccccEEEcccccHHHHHHHHHHHcccEEEccEcccEccHHHHEEEccccEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAEladvfpvvktsiggtriIGRLcagnknglllphtttDQELQHLRNSLPDQVVVQRIEERLSALgnciacndhvalthtdldRETEEMIADVLGVEVFRQTIAGNILVGSYcsfsnrgglvhphtsiedlDELSTllqvplvagtvnrgseviaagltvndwtafcgsdttaTELSVIESVFKLREAQPSALVDEMRKSLIDSYV
Flexible Loop (DISEMBL)
MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKlreaqpsalvdemrkslidsyv
Low Complexity Region (SEG)
MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSYV
Disordered region (IsUnstruct)
*****MFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLR********************
Disordered Region (DISOPRED)
MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQ****VDEMRKSLIDSYV
Disordered Region (DISEMBL)
********NSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSYV
Disordered Region (DISPRO)
MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q9M060	245	Eukaryotic translation in	yes	no	1.0	1.0	0.893	1e-131
O55135	245	Eukaryotic translation in	yes	no	0.991	0.991	0.748	1e-106
P56537	245	Eukaryotic translation in	yes	no	0.991	0.991	0.744	1e-106
Q3KRD8	245	Eukaryotic translation in	yes	no	0.991	0.991	0.744	1e-106
Q9TU47	245	Eukaryotic translation in	yes	no	0.991	0.991	0.740	1e-105
Q6GR45	245	Eukaryotic translation in	N/A	no	0.991	0.991	0.736	1e-104
Q12522	245	Eukaryotic translation in	yes	no	0.995	0.995	0.717	1e-104
Q59L13	245	Eukaryotic translation in	N/A	no	0.995	0.995	0.713	1e-103
Q6ZM19	245	Eukaryotic translation in	yes	no	0.991	0.991	0.728	1e-103
A4RSQ6	245	Eukaryotic translation in	yes	no	1.0	1.0	0.685	1e-102

>sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1

 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/245 (89%), Positives = 240/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRL FEN+CEVGVFSKLTNAYCLVAIGGSE+FYS FE+ELADV P+VKTSIGGTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LD+ETEE+IADVLGVEVFRQTIAGNILVGSYC+ SN+GG+VHPHTS+EDL+ELSTLLQVP
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWT+FCGSDTTATELSVI+S+FKLREAQPS++VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSL 240

Query: 241 IDSYV 245
           ID+YV
Sbjct: 241 IDTYV 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 207/243 (85%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FEN+CEVG F+KLTNAYCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EA+PS +   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query: 241 IDS 243
           IDS
Sbjct: 241 IDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Mus musculus (taxid: 10090)

>sp|P56537|IF6_HUMAN Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/243 (74%), Positives = 206/243 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FEN+CE+G F+KLTN YCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query: 241 IDS 243
           IDS
Sbjct: 241 IDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Homo sapiens (taxid: 9606)

>sp|Q3KRD8|IF6_RAT Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=2 SV=1

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/243 (74%), Positives = 206/243 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FEN+CEVG F+KLTN YCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EA+PS +   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query: 241 IDS 243
           IDS
Sbjct: 241 IDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9TU47|IF6_BOVIN Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/243 (74%), Positives = 205/243 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FEN+CE+G F+KLTN+YCLVAIGGSE+FYS FE ELA   PVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query: 241 IDS 243
           IDS
Sbjct: 241 IDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Bos taurus (taxid: 9913)

>sp|Q6GR45|IF6_XENLA Eukaryotic translation initiation factor 6 OS=Xenopus laevis GN=eif6 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/243 (73%), Positives = 206/243 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FEN+ E+G F+KLTN YCLVAIGGSE+FYS FE EL++  PVV  SI G RIIG
Sbjct: 1   MAVRASFENNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETIPVVHASIAGCRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+C GN++GL++P+ TTDQELQH+RNSLPD V +QR+EERLSALGN IACND+VAL H D
Sbjct: 61  RMCVGNRHGLMVPNNTTDQELQHMRNSLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE++ADVL VEVFRQTIA  +LVGSYC+FSN+GGL+HP TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTIAEQVLVGSYCAFSNQGGLLHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LV GTVNRGSEVIAAG+ VNDW AFCG DTT+TELSVIESVFKL +A PS +   MR SL
Sbjct: 181 LVTGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFKLSDAHPSTIATSMRDSL 240

Query: 241 IDS 243
           IDS
Sbjct: 241 IDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|Q12522|IF6_YEAST Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/244 (71%), Positives = 208/244 (85%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVP
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L++AQP ++   +R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240

Query: 241 IDSY 244
           I++Y
Sbjct: 241 IETY 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by the GTPase RIA1/EFL1 and by SDO1. Also required for pre-rRNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q59L13|IF6_CANAL Eukaryotic translation initiation factor 6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TIF6 PE=3 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/244 (71%), Positives = 208/244 (85%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATR  FENS EVGVFS LTN+YCLVA+GGSE+FYS FEAEL DV P+V T+I GTRI+G
Sbjct: 1   MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+ +GN+ GLL+P  TTDQEL HLRNSLPD + +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           ++RETEE+IADVLGVEVFRQTIAGN+LVGSYCS SN+GGLVHP TSI+D +ELS+LLQVP
Sbjct: 121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTSIQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGS V+ AG+ VNDW +  G DTTA ELSVIES+F+L++AQP A+   +R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDWLSVAGLDTTAPELSVIESIFRLQDAQPDAIGGNLRDTL 240

Query: 241 IDSY 244
           I++Y
Sbjct: 241 IETY 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6ZM19|IF6_DANRE Eukaryotic translation initiation factor 6 OS=Danio rerio GN=eif6 PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/243 (72%), Positives = 204/243 (83%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FE + E+G F+KLTN YCLVAIGGSE+FYS FE EL++  PV+  SI G RIIG
Sbjct: 1   MAVRASFEKNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETMPVIHASIAGCRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+C GN++GLL+P+ TTDQELQH+RN LPD V +QR+EERLSALGN IACND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE++AD L VEVFRQT+A  +LVGSYC+FSN+GGLVH  TSIED DELS+LLQVP
Sbjct: 121 LDRETEEILADTLKVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSVIESVF+L E QPSA+   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSL 240

Query: 241 IDS 243
           IDS
Sbjct: 241 IDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Danio rerio (taxid: 7955)

>sp|A4RSQ6|IF6_OSTLU Eukaryotic translation initiation factor 6 OS=Ostreococcus lucimarinus (strain CCE9901) GN=EIF6 PE=3 SV=2

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 168/245 (68%), Positives = 209/245 (85%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FENS E+GVF+ LTNAYCL A+GGSE+FYS FEAEL++  PV+K S+ GTR++G
Sbjct: 1   MAARHQFENSNEIGVFAALTNAYCLAAVGGSENFYSVFEAELSNEIPVIKASLAGTRLVG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RL  GNK+GLLLP + TDQE+ H+RNSLPD+V+VQR EERLSALGNC+ACNDHVAL H D
Sbjct: 61  RLSVGNKHGLLLPTSATDQEVMHIRNSLPDEVIVQRTEERLSALGNCVACNDHVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           +D+ETEE+IADVLGVEVFRQ++AGN+LVGS+C FSNRGG+VHP  S++++DELS+LLQVP
Sbjct: 121 IDQETEEIIADVLGVEVFRQSVAGNVLVGSFCKFSNRGGMVHPQASVQEVDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGT+NRGS+VI AGL VNDW AFCG DTT+TE+ VIES+++L  A  S  V ++R SL
Sbjct: 181 LVAGTINRGSDVIGAGLLVNDWIAFCGLDTTSTEIQVIESIYQLHGADSSGAVRDIRASL 240

Query: 241 IDSYV 245
           +D+ V
Sbjct: 241 LDTLV 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Ostreococcus lucimarinus (strain CCE9901) (taxid: 436017)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
255583438	245	translation initiation factor, putative	1.0	1.0	0.959	1e-135
356530991	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.959	1e-135
225438420	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.955	1e-135
356559971	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.959	1e-135
356576589	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.942	1e-133
255646745	245	unknown [Glycine max]	1.0	1.0	0.951	1e-133
118480999	245	unknown [Populus trichocarpa]	1.0	1.0	0.938	1e-133
224094250	245	predicted protein [Populus trichocarpa]	1.0	1.0	0.922	1e-132
224109868	245	predicted protein [Populus trichocarpa]	1.0	1.0	0.930	1e-131
357121765	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.918	1e-130

>gi|255583438|ref|XP_002532478.1| translation initiation factor, putative [Ricinus communis] gi|223527803|gb|EEF29902.1| translation initiation factor, putative [Ricinus communis]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/245 (95%), Positives = 240/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYS FE+ELADV PVVKTSI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSAFESELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPD VVVQRIEERLSALGNCIACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDNVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LD+ETEEMIADVLGVEVFRQTIAGNILVGSYC+ SNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDKETEEMIADVLGVEVFRQTIAGNILVGSYCALSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWTAFCGSDTTATELSVIESVFKLREAQPSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           IDSYV
Sbjct: 241 IDSYV 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530991|ref|XP_003534062.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356530993|ref|XP_003534063.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/245 (95%), Positives = 241/245 (98%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRL FEN+CEVGVFSKLTNAYCLVAIGGSESFYS FEAELADV PVVKTSIGGTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEEMIADVLGVEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWTAFCGSDTTATELSVIESVFKLREAQPSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           ID+YV
Sbjct: 241 IDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438420|ref|XP_002276166.1| PREDICTED: eukaryotic translation initiation factor 6-2 isoform 1 [Vitis vinifera] gi|147840016|emb|CAN77181.1| hypothetical protein VITISV_038707 [Vitis vinifera] gi|296082575|emb|CBI21580.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/245 (95%), Positives = 240/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRL FENSCEVGVFSKLTNAYCLVAIGGSESFYS FE+ELADV PVVKTSIGGTRIIG
Sbjct: 1   MATRLQFENSCEVGVFSKLTNAYCLVAIGGSESFYSVFESELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNK GLLLPHTTTDQELQHLRNSLPDQVVVQRIEE+LSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKKGLLLPHTTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEEM+ADVLGVEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDRETEEMVADVLGVEVFRQTIAGNILVGSYCTFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWTAFCGSDTTATELSVIESVFKLREAQPSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           IDSYV
Sbjct: 241 IDSYV 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559971|ref|XP_003548269.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356559973|ref|XP_003548270.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/245 (95%), Positives = 241/245 (98%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRL FEN+CEVGVFSKLTNAYCLVAIGGSESFYS FEAELA V PVVKTSIGGTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELAGVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEEMIADVLGVEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWTAFCGSDTTATELSVIESVFKLREAQPSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           ID+YV
Sbjct: 241 IDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576589|ref|XP_003556413.1| PREDICTED: eukaryotic translation initiation factor 6-2-like [Glycine max]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/245 (94%), Positives = 239/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRL FEN+CEVGVFSKLTNAYCLVAIGGSE+FYS FEAELADV PVVKTSIGGTRI+G
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLC GNKNGLLLPHT TDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD
Sbjct: 61  RLCVGNKNGLLLPHTITDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LD+ETEEMIADVLGVEVFRQT+AGNILVGSYC FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDKETEEMIADVLGVEVFRQTVAGNILVGSYCVFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWTAFCGSDTTATELSVIESVFKLREAQPSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           ID+YV
Sbjct: 241 IDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646745|gb|ACU23846.1| unknown [Glycine max]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/245 (95%), Positives = 239/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRL FEN+CEVGVFSKLTN YCLVAIGGSESFYS FEAELADV PVVKTSIGGTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNTYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEEMIADVLGVEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDEL TLLQVP
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELFTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWTAFCGSDTTATELSVIESVFKLREAQPSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           ID+YV
Sbjct: 241 IDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118480999|gb|ABK92453.1| unknown [Populus trichocarpa]

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/245 (93%), Positives = 240/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA+RL FEN+CEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADV PVVKTSI GTRIIG
Sbjct: 1   MASRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+E+LSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE+IADVLGVEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVI AG+TVNDWTAFCGSDTTATELSVIESVFKLREA+PSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIGAGITVNDWTAFCGSDTTATELSVIESVFKLREARPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           IDSYV
Sbjct: 241 IDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094250|ref|XP_002310109.1| predicted protein [Populus trichocarpa] gi|118489313|gb|ABK96461.1| unknown [Populus trichocarpa x Populus deltoides] gi|222853012|gb|EEE90559.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/245 (92%), Positives = 240/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATRLMFENSCEVGVFSKLTNAYCLVAIGGSE+FYSTFEAEL DV PVVKTSIGG+RIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSTFEAELGDVIPVVKTSIGGSRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNG+LLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGN +ACNDHVALTHTD
Sbjct: 61  RLCAGNKNGILLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNGVACNDHVALTHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LD+ETEEMI+DVLGVEVFRQT+AGN+LVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDKETEEMISDVLGVEVFRQTVAGNVLVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGT+NRGSEVIAAGLTVNDW AFCG+DTTATELSVIESVFKLREAQP+A+V+EMR SL
Sbjct: 181 LVAGTINRGSEVIAAGLTVNDWAAFCGADTTATELSVIESVFKLREAQPNAIVNEMRNSL 240

Query: 241 IDSYV 245
           IDSYV
Sbjct: 241 IDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109868|ref|XP_002315337.1| predicted protein [Populus trichocarpa] gi|222864377|gb|EEF01508.1| predicted protein [Populus trichocarpa]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/245 (93%), Positives = 238/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA+RL FEN+CEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADV PVVKTSI GTRIIG
Sbjct: 1   MASRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLCAGNKNGLL+PHTTTDQ L HLRNSLPDQVVVQRI+E+LSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQGLGHLRNSLPDQVVVQRIDEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE+IADVLGVEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVI AG+TVNDWTAFCGSDTTATELSVIESVFKLREA+PSA+VDEMRKSL
Sbjct: 181 LVAGTVNRGSEVIGAGITVNDWTAFCGSDTTATELSVIESVFKLREARPSAIVDEMRKSL 240

Query: 241 IDSYV 245
           IDSYV
Sbjct: 241 IDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121765|ref|XP_003562588.1| PREDICTED: eukaryotic translation initiation factor 6-2-like [Brachypodium distachyon]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/245 (91%), Positives = 238/245 (97%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATR+ FEN+CEVGVFSKLTNAYCLVAIGGSE+FYSTFE+ELADV PVVKTSIGGTRIIG
Sbjct: 1   MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFESELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RLC GNKNGLLLPHTTTDQELQHLRN LPDQVVVQRI+ERLSALGNCI+CNDHVALTH D
Sbjct: 61  RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCISCNDHVALTHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LD+ TEE+IADVLGVEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVP
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGSYCTFSNRGGLVHPHTSIEDLDELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGSEVIAAG+TVNDWTAFCGSDTTATELSVIESVFKLRE QP+A+VD+MRKSL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREGQPTAIVDDMRKSL 240

Query: 241 IDSYV 245
           IDSYV
Sbjct: 241 IDSYV 245

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2078921	245	eIF6A "AT3G55620" [Arabidopsis	1.0	1.0	0.893	1.1e-117
MGI|MGI:1196288	245	Eif6 "eukaryotic translation i	0.991	0.991	0.748	2.9e-96
UNIPROTKB|P56537	245	EIF6 "Eukaryotic translation i	0.991	0.991	0.744	4.7e-96
RGD|1305373	245	Eif6 "eukaryotic translation i	0.991	0.991	0.744	7.6e-96
UNIPROTKB|Q9TU47	245	EIF6 "Eukaryotic translation i	0.991	0.991	0.740	2.6e-95
UNIPROTKB|E2R1S5	242	EIF6 "Eukaryotic translation i	0.987	1.0	0.739	1.8e-94
CGD|CAL0001603	245	orf19.1815 [Candida albicans (	0.995	0.995	0.713	3.4e-93
SGD|S000006220	245	TIF6 "Constituent of 66S pre-r	0.995	0.995	0.717	5.5e-93
ZFIN|ZDB-GENE-031118-110	245	eif6 "eukaryotic translation i	0.991	0.991	0.728	5.5e-93
UNIPROTKB|F1NGL6	242	EIF6 "Eukaryotic translation i	0.987	1.0	0.735	7e-93

TAIR|locus:2078921 eIF6A "AT3G55620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 219/245 (89%), Positives = 240/245 (97%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MATRL FEN+CEVGVFSKLTNAYCLVAIGGSE+FYS FE+ELADV P+VKTSIGGTRIIG
Sbjct:     1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             RLCAGNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VAL HTD
Sbjct:    61 RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LD+ETEE+IADVLGVEVFRQTIAGNILVGSYC+ SN+GG+VHPHTS+EDL+ELSTLLQVP
Sbjct:   121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVIAAG+TVNDWT+FCGSDTTATELSVI+S+FKLREAQPS++VDEMRKSL
Sbjct:   181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSL 240

Query:   241 IDSYV 245
             ID+YV
Sbjct:   241 IDTYV 245

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

MGI|MGI:1196288 Eif6 "eukaryotic translation initiation factor 6" [Mus musculus (taxid:10090)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 182/243 (74%), Positives = 207/243 (85%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MA R  FEN+CEVG F+KLTNAYCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EA+PS +   MR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query:   241 IDS 243
             IDS
Sbjct:   241 IDS 243

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005638 "lamin filament" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005882 "intermediate filament" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

UNIPROTKB|P56537 EIF6 "Eukaryotic translation initiation factor 6" [Homo sapiens (taxid:9606)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 181/243 (74%), Positives = 206/243 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MA R  FEN+CE+G F+KLTN YCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query:   241 IDS 243
             IDS
Sbjct:   241 IDS 243

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1305373 Eif6 "eukaryotic translation initiation factor 6" [Rattus norvegicus (taxid:10116)]

 Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
 Identities = 181/243 (74%), Positives = 206/243 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MA R  FEN+CEVG F+KLTN YCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EA+PS +   MR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query:   241 IDS 243
             IDS
Sbjct:   241 IDS 243

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

UNIPROTKB|Q9TU47 EIF6 "Eukaryotic translation initiation factor 6" [Bos taurus (taxid:9913)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 180/243 (74%), Positives = 205/243 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MA R  FEN+CE+G F+KLTN+YCLVAIGGSE+FYS FE ELA   PVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVP
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query:   241 IDS 243
             IDS
Sbjct:   241 IDS 243

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|E2R1S5 EIF6 "Eukaryotic translation initiation factor 6" [Canis lupus familiaris (taxid:9615)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 179/242 (73%), Positives = 203/242 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MA R  FEN+CE+G F+KLTN YCLVAIGGSE+FYS FE ELAD  PVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LDRETEE++ADVL VEVFRQT+A  +LVGSY  FSN+GGLVHP TSIED DELS+LLQVP
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query:   241 ID 242
             ID
Sbjct:   241 ID 242

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

CGD|CAL0001603 orf19.1815 [Candida albicans (taxid:5476)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 174/244 (71%), Positives = 208/244 (85%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MATR  FENS EVGVFS LTN+YCLVA+GGSE+FYS FEAEL DV P+V T+I GTRI+G
Sbjct:     1 MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+ +GN+ GLL+P  TTDQEL HLRNSLPD + +QR+EERLSALGN I CND+VAL H D
Sbjct:    61 RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             ++RETEE+IADVLGVEVFRQTIAGN+LVGSYCS SN+GGLVHP TSI+D +ELS+LLQVP
Sbjct:   121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTSIQDQEELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGS V+ AG+ VNDW +  G DTTA ELSVIES+F+L++AQP A+   +R +L
Sbjct:   181 LVAGTVNRGSSVVGAGMVVNDWLSVAGLDTTAPELSVIESIFRLQDAQPDAIGGNLRDTL 240

Query:   241 IDSY 244
             I++Y
Sbjct:   241 IETY 244

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

SGD|S000006220 TIF6 "Constituent of 66S pre-ribosomal particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 175/244 (71%), Positives = 208/244 (85%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIG
Sbjct:     1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct:    61 RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVP
Sbjct:   121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L++AQP ++   +R +L
Sbjct:   181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240

Query:   241 IDSY 244
             I++Y
Sbjct:   241 IETY 244

GO:0043023 "ribosomal large subunit binding" evidence=IEA;IDA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA;IMP;IPI

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA;IGI

GO:0006364 "rRNA processing" evidence=IGI

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-031118-110 eif6 "eukaryotic translation initiation factor 6" [Danio rerio (taxid:7955)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 177/243 (72%), Positives = 204/243 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MA R  FE + E+G F+KLTN YCLVAIGGSE+FYS FE EL++  PV+  SI G RIIG
Sbjct:     1 MAVRASFEKNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETMPVIHASIAGCRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+C GN++GLL+P+ TTDQELQH+RN LPD V +QR+EERLSALGN IACND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LDRETEE++AD L VEVFRQT+A  +LVGSYC+FSN+GGLVH  TSIED DELS+LLQVP
Sbjct:   121 LDRETEEILADTLKVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSVIESVF+L E QPSA+   MR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSL 240

Query:   241 IDS 243
             IDS
Sbjct:   241 IDS 243

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|F1NGL6 EIF6 "Eukaryotic translation initiation factor 6" [Gallus gallus (taxid:9031)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 178/242 (73%), Positives = 201/242 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
             MA R  FEN+ E G F+KLTNAYCLVAIGGSE+FYS FE EL    PVV  SI G RIIG
Sbjct:     1 MAVRASFENNNEQGCFAKLTNAYCLVAIGGSENFYSVFEGELFGTIPVVHASIAGCRIIG 60

Query:    61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
             R+C GN++GLL+P +TTDQELQH+RNSLPD V +QR+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPSSTTDQELQHIRNSLPDSVRIQRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
             LDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GG+VHP TSIED DELS+LLQVP
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGIVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
             LVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSVIES+FKL EAQPS +   MR SL
Sbjct:   181 LVAGTVNRGSEVIGAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSL 240

Query:   241 ID 242
             ID
Sbjct:   241 ID 242

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O58264	IF6_PYRHO	No assigned EC number	0.3652	0.8734	0.9427	yes	no
B6YWY2	IF6_THEON	No assigned EC number	0.3607	0.8734	0.9385	yes	no
P56538	IF6_DROME	No assigned EC number	0.7107	0.9877	0.9877	yes	no
P56537	IF6_HUMAN	No assigned EC number	0.7448	0.9918	0.9918	yes	no
Q5ASA6	IF6_EMENI	No assigned EC number	0.7032	0.9959	0.9878	yes	no
Q9TU47	IF6_BOVIN	No assigned EC number	0.7407	0.9918	0.9918	yes	no
O55135	IF6_MOUSE	No assigned EC number	0.7489	0.9918	0.9918	yes	no
Q9UYI6	IF6_PYRAB	No assigned EC number	0.3660	0.8938	0.9647	yes	no
Q2UTN7	IF6_ASPOR	No assigned EC number	0.6869	0.9959	0.9878	yes	no
Q8TIN4	IF6_METAC	No assigned EC number	0.3411	0.8408	0.9449	yes	no
Q8PYQ3	IF6_METMA	No assigned EC number	0.3598	0.8448	0.9452	yes	no
Q5JGT4	IF6_PYRKO	No assigned EC number	0.3590	0.8734	0.9344	yes	no
A7ANL7	IF6_BABBO	No assigned EC number	0.5783	1.0	0.9839	N/A	no
A4RSQ6	IF6_OSTLU	No assigned EC number	0.6857	1.0	1.0	yes	no
B9PVB9	IF6_TOXGO	No assigned EC number	0.6680	0.9918	0.9759	N/A	no
A9A305	IF6_NITMS	No assigned EC number	0.3349	0.8326	0.9230	yes	no
Q9M060	IF62_ARATH	No assigned EC number	0.8938	1.0	1.0	yes	no
B8MDN4	IF6_TALSN	No assigned EC number	0.6829	0.9959	0.9878	N/A	no
Q551M2	IF6_DICDI	No assigned EC number	0.7292	0.9346	0.9385	yes	no
C9SV08	IF6_VERA1	No assigned EC number	0.6897	0.9959	0.9918	N/A	no
A2BN57	IF6_HYPBU	No assigned EC number	0.3628	0.9102	0.9911	yes	no
Q6ZM19	IF6_DANRE	No assigned EC number	0.7283	0.9918	0.9918	yes	no
Q7S2W6	IF6_NEUCR	No assigned EC number	0.7020	0.9959	0.9918	N/A	no
Q8SS47	IF6_ENCCU	No assigned EC number	0.4734	0.9795	0.9958	yes	no
Q3ITD5	IF6_NATPD	No assigned EC number	0.3665	0.8693	0.9638	yes	no
Q59L13	IF6_CANAL	No assigned EC number	0.7131	0.9959	0.9959	N/A	no
Q6GR45	IF6_XENLA	No assigned EC number	0.7366	0.9918	0.9918	N/A	no
D1ZG64	IF6_SORMK	No assigned EC number	0.7020	0.9959	0.9918	N/A	no
Q245F2	IF6_TETTS	No assigned EC number	0.6556	0.9836	0.9836	N/A	no
O81920	IF6_BETVU	No assigned EC number	0.8756	0.7877	1.0	N/A	no
O62106	IF6_CAEEL	No assigned EC number	0.5894	1.0	0.9959	yes	no
C5A7H2	IF6_THEGJ	No assigned EC number	0.3607	0.8734	0.9385	yes	no
Q4E097	IF61_TRYCC	No assigned EC number	0.6081	0.9877	0.9758	N/A	no
A1RXF3	IF6_THEPD	No assigned EC number	0.3127	0.8408	0.9237	yes	no
B8GEU6	IF6_METPE	No assigned EC number	0.3039	0.9020	1.0	yes	no
A7I9I6	IF6_METB6	No assigned EC number	0.3318	0.8734	0.9727	yes	no
Q2NGQ7	IF6_METST	No assigned EC number	0.3524	0.9061	0.9910	yes	no
Q8U3S8	IF6_PYRFU	No assigned EC number	0.3698	0.8734	0.9427	yes	no
B0EMY3	IF6_ENTDS	No assigned EC number	0.6177	0.9142	0.9372	N/A	no
Q3KRD8	IF6_RAT	No assigned EC number	0.7448	0.9918	0.9918	yes	no
Q12522	IF6_YEAST	No assigned EC number	0.7172	0.9959	0.9959	yes	no
Q9YD27	IF6_AERPE	No assigned EC number	0.3594	0.8734	0.9184	yes	no
Q46FA1	IF6_METBF	No assigned EC number	0.3457	0.8448	0.9452	yes	no
O94476	IF6_SCHPO	No assigned EC number	0.7131	0.9918	0.9959	yes	no
Q98RM8	IF6_GUITH	No assigned EC number	0.3632	0.9102	0.9780	yes	no
O27648	IF6_METTH	No assigned EC number	0.3171	0.9061	1.0	yes	no
Q12ZJ5	IF6_METBU	No assigned EC number	0.3504	0.8367	0.9447	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
PTZ00136	247	PTZ00136, PTZ00136, eukaryotic translation initiat	1e-157
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	1e-124
smart00654	200	smart00654, eIF6, translation initiation factor 6	1e-115
pfam01912	197	pfam01912, eIF-6, eIF-6 family	1e-108
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	4e-97
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	3e-83
PRK04046	222	PRK04046, PRK04046, translation initiation factor	4e-64

>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like protein; Provisional

 Score =  436 bits (1122), Expect = e-157
 Identities = 178/246 (72%), Positives = 207/246 (84%), Gaps = 2/246 (0%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FENS ++GVFSKLTN+YCLVA+GGSE+FYS FE+ELA   PVV T+IGGTR+IG
Sbjct: 1   MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           RL  GN+ GLL+P   TDQELQHLRNSLPD V VQR+EERLSALGNCIACND+VAL H D
Sbjct: 61  RLTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRETEE+I DVLGVEVFR TIAGN+LVG+YC F+N+GGLVHP TS++++DELS+LLQVP
Sbjct: 121 LDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQ--PSALVDEMRK 238
           LVAGTVNRGS+VI AGL VNDW AFCG DTTATE+SVIE +FKLR A       + ++R 
Sbjct: 181 LVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS 240

Query: 239 SLIDSY 244
           SLID+ 
Sbjct: 241 SLIDTL 246

Length = 247

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score =  351 bits (904), Expect = e-124
 Identities = 139/222 (62%), Positives = 162/222 (72%), Gaps = 2/222 (0%)

Query: 2   ATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGR 61
           A RL FE S  +GVF+K TN+YCLV  GG E+F S FE EL    PVV+T+IGG+R++G 
Sbjct: 1   AIRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEEL--GVPVVRTTIGGSRLVGS 58

Query: 62  LCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDL 121
           L  GN NGLLLPHTTTDQELQH+RNSLPD+V V R++E LSALGN I CNDH AL H DL
Sbjct: 59  LTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDL 118

Query: 122 DRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPL 181
            +E EE+I DVLGVEVFR TIAG   VGS    +N+GGLVHP TS E+L+ELS L +VP+
Sbjct: 119 SKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPV 178

Query: 182 VAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFK 223
           VAGTVN GS+ + AGL  N   A  GSDTT  ELS IE    
Sbjct: 179 VAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score =  326 bits (839), Expect = e-115
 Identities = 140/202 (69%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 3   TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRL 62
            RL FE S  +GV+ KLTN+YCLV +GG E+FYS  E  L    PVV TSIGG+R+IGRL
Sbjct: 1   DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRL 58

Query: 63  CAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLD 122
             GN NGLL+P+TTTDQELQHLRNSLPD V VQR+EERL+ALGN I CNDH AL   DL 
Sbjct: 59  TVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLS 118

Query: 123 RETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV 182
           +ETEE+I+DVLGVEVFR TIAGNI VGSYC  +N+GGLVHP TS E+L ELS LL VPLV
Sbjct: 119 KETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLV 178

Query: 183 AGTVNRGSEVIAAGLTVNDWTA 204
           AGTVN GSEV+ AGL  ND  A
Sbjct: 179 AGTVNFGSEVVGAGLVANDNGA 200

Length = 200

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score =  310 bits (798), Expect = e-108
 Identities = 119/201 (59%), Positives = 142/201 (70%), Gaps = 4/201 (1%)

Query: 4   RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLC 63
           RL  E S  +GVF++ TN Y LV  G SE FYS  E EL  V  VV+TSI G+R++G L 
Sbjct: 1   RLSIEGSPNIGVFARATNDYALVPPGLSEEFYSVIEEEL-GV-EVVETSIAGSRLVGSLT 58

Query: 64  AGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDR 123
            GN NGLL+P T TD+EL HL+ SL   V V+R+EE+L+ALGN I  ND  AL H DL R
Sbjct: 59  VGNSNGLLVPSTATDEELDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDLSR 116

Query: 124 ETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA 183
           ETEE+IADVLGVEVFR TIAGN  VGS    +N+GGLVHP  + E+L+ELS LL VP+ A
Sbjct: 117 ETEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPVDA 176

Query: 184 GTVNRGSEVIAAGLTVNDWTA 204
           GTVNRGS ++ AGL  ND  A
Sbjct: 177 GTVNRGSPLVGAGLVANDKGA 197

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score =  282 bits (724), Expect = 4e-97
 Identities = 108/224 (48%), Positives = 133/224 (59%), Gaps = 4/224 (1%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           M  RL FE S  +GV++K T +Y LV  G  E F       L    PVV+T+I G+R++G
Sbjct: 2   MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGV--PVVETTIAGSRLVG 59

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
            L AGN NGLL+P+   D+EL+ L+N     V V  +  +L+ALGN I  ND  AL H D
Sbjct: 60  ALTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPD 117

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           L  E E+ I DVLGVEV R TIAG   VGS    +N+GGLVHP TS E+L+ELS L  VP
Sbjct: 118 LSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVP 177

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           +  GTVN GS  + AGL  N   A  G DTT  EL+ IE     
Sbjct: 178 VDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221

Length = 222

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score =  247 bits (632), Expect = 3e-83
 Identities = 123/222 (55%), Positives = 154/222 (69%), Gaps = 7/222 (3%)

Query: 4   RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLC 63
           R  F  + E+GV++K+T  Y LV + GSE+FYS FE EL    PV+ T+I G+ ++G L 
Sbjct: 1   RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGALT 58

Query: 64  AGNKNGLLLPHTTTDQELQHLRNSLPDQVV-VQRIEERLSALGNCIACNDHVALTHTDLD 122
            GN  GLL+     DQ L H  +SLPD +V VQRIEERL+ALGN I CND+ AL   +LD
Sbjct: 59  VGNSRGLLVS----DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPELD 114

Query: 123 RETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV 182
           R+TEE+I+DVLGVEVFR TIAG I VGSY   +NRGGLVHP TS+++ +ELS+LL V LV
Sbjct: 115 RDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELV 174

Query: 183 AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           AGTVNRG+ V+ A +  N   A  G DTT  ELS+IE    L
Sbjct: 175 AGTVNRGTTVVGACMVANSKGAVVGLDTTGPELSIIEEALGL 216

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score =  198 bits (507), Expect = 4e-64
 Identities = 94/226 (41%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           M  RL    S  +GV+++ T+ Y LV     E      E  L  V  VV+T+I G+ ++G
Sbjct: 1   MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETL-GV-EVVETTIAGSSLVG 58

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
            L AGN NG+L+P    D+EL+ L+ +L   + V+ +  +L+ALGN I  ND  AL H +
Sbjct: 59  SLAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPE 116

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           L  E  ++I D LGVEV R TIAG   VGS    +N+GGLVHP  + E+L  L  L +V 
Sbjct: 117 LSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVE 176

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226
           +  GTVN GS ++ +GL  N   A  GSDTT  EL  IE      E
Sbjct: 177 VDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	99.97
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	99.96
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	99.78

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=1.7e-84  Score=580.87  Aligned_cols=245  Identities=72%  Similarity=1.150  Sum_probs=241.1

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus         1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (247)
T PTZ00136          1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE   80 (247)
T ss_pred             CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||++||++++|+++++|++|+||||+|||++|||||++++++++.|+|+|||||+|++|||+++|||++++||+|+|
T Consensus        81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~L  160 (247)
T PTZ00136         81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGL  160 (247)
T ss_pred             HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc--CCCchhHHHHHH
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE--AQPSALVDEMRK  238 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~--~~~~~~~~~~~~  238 (245)
                      |||+++++|+++|+++||||+.+||+|+|+++||||++|||||++|||+||++|+++||++||++.  .++..+..+||+
T Consensus       161 VhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~  240 (247)
T PTZ00136        161 VHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS  240 (247)
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccCCchhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998  556778899999


Q ss_pred             HhhhhcC
Q 025981          239 SLIDSYV  245 (245)
Q Consensus       239 ~~~~~~~  245 (245)
                      +|||+|.
T Consensus       241 ~~~~~~~  247 (247)
T PTZ00136        241 SLIDTLA  247 (247)
T ss_pred             HHHHhhC
Confidence            9999974

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-79  Score=534.35  Aligned_cols=220  Identities=49%  Similarity=0.704  Sum_probs=217.7

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+|+|+  +|+++|+|+||++||+|++|||||+|||+.++|+|
T Consensus         2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E   79 (222)
T COG1976           2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE   79 (222)
T ss_pred             ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence            8899999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||+  +.+++|.++++|+||+||.|+||||+||+||++++++.|.|+|+|||||+|++|||.++|||+++.||||+|
T Consensus        80 l~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~L  157 (222)
T COG1976          80 LRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGL  157 (222)
T ss_pred             HHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcce
Confidence            999998  678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL  224 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v  224 (245)
                      |||.++++|+++|+++|+|++..||+|+|+++||+|+||||||++||.+||+|||.|||++|++
T Consensus       158 vhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~aLg~  221 (222)
T COG1976         158 VHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF  221 (222)
T ss_pred             eCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999984

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.4e-79  Score=526.35  Aligned_cols=245  Identities=80%  Similarity=1.222  Sum_probs=242.8

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+||++||+|+++||.||||..+.+++||+.||++|++.+|+++|+|+|+++||+||+||+||||||+.+||||
T Consensus         1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE   80 (245)
T KOG3185|consen    1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE   80 (245)
T ss_pred             CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      |+|||++|||.+.++|+++|++|+||.|+|||++||||||+++++++.|+|+|+|||+|.+||+.++|||||+.+|+|++
T Consensus        81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~l  160 (245)
T KOG3185|consen   81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGL  160 (245)
T ss_pred             HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHh
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL  240 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~  240 (245)
                      |||.++-|++++|+++|+||+..||+|+|+..+|+|+++|||-+++|.+||..|+.+||.+|++.+++|+.+..+||++|
T Consensus       161 Vhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiFkL~~aqp~~i~~~~R~~l  240 (245)
T KOG3185|consen  161 VHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIFKLNEAQPSSISSELRDTL  240 (245)
T ss_pred             ecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHHhhcccCchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcC
Q 025981          241 IDSYV  245 (245)
Q Consensus       241 ~~~~~  245 (245)
                      ||++.
T Consensus       241 id~~~  245 (245)
T KOG3185|consen  241 IDSYV  245 (245)
T ss_pred             HHhcC
Confidence            99874

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=4.7e-74  Score=499.95  Aligned_cols=199  Identities=53%  Similarity=0.811  Sum_probs=173.2

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHH
Q 025981            3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQ   82 (245)
Q Consensus         3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~   82 (245)
                      +|++|+|||+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||||||++++|+|++
T Consensus         1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~   78 (199)
T PF01912_consen    1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE   78 (199)
T ss_dssp             -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred             CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence            58999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 025981           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH  162 (245)
Q Consensus        83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~  162 (245)
                      +||+++| +++|+++++|+||+||+|+|||++|+|||+++++++|.|+|+|||||+|++||+.++|||++|+||+|+|||
T Consensus        79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~Lvh  157 (199)
T PF01912_consen   79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVH  157 (199)
T ss_dssp             HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-
T ss_pred             HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEEC
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceE
Q 025981          163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTA  204 (245)
Q Consensus       163 p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~ga  204 (245)
                      |+++++|+++|+++|+||+.+||||+|+++||+|++||||||
T Consensus       158 P~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~  199 (199)
T PF01912_consen  158 PDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA  199 (199)
T ss_dssp             TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred             CCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence            999999999999999999999999999999999999999997

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=4.3e-65  Score=450.85  Aligned_cols=222  Identities=42%  Similarity=0.612  Sum_probs=218.9

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||+|+++||+|||+|++++++.++.|++.|+  +++++++|+||+++|+|++||+||+|+|+.++++|
T Consensus         1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e   78 (222)
T PRK04046          1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE   78 (222)
T ss_pred             CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence            8999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++|++.|  +++|.+++.+++++||++++||++|++||+++++.++.|+|+|||+|.+.+|++.++||+++++||+|+|
T Consensus        79 ~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~l  156 (222)
T PRK04046         79 LELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGL  156 (222)
T ss_pred             HHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEE
Confidence            99999997  6899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  226 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~  226 (245)
                      |||+++++|+++|++.|+||+.+||+|+|.++||||++|||||++|||+||++|+++||++||+.+
T Consensus       157 v~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~l~~~~  222 (222)
T PRK04046        157 VHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE  222 (222)
T ss_pred             ECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999853

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=7e-65  Score=449.08  Aligned_cols=219  Identities=63%  Similarity=0.945  Sum_probs=211.5

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHH
Q 025981            3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQ   82 (245)
Q Consensus         3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~   82 (245)
                      +|++|+|+|+||+|+++||+|||+|++.++++.+.|+|+|+  +++++++|+||++||+|++||++|+|||+.++|+|++
T Consensus         2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~   79 (220)
T cd00527           2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ   79 (220)
T ss_pred             eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence            69999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 025981           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH  162 (245)
Q Consensus        83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~  162 (245)
                      +||+.|+.++.+.+...+.+++||++++||++||+||.++++.++.|+|+|+|+|++.+|++.+.+|+++++||+|+|||
T Consensus        80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~Lvh  159 (220)
T cd00527          80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVH  159 (220)
T ss_pred             HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEEC
Confidence            99999876666655555555999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhC
Q 025981          163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFK  223 (245)
Q Consensus       163 p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~  223 (245)
                      |+++++|++.|+++||||+.+||+|+|.++|||+++|||||++|||+||++|+++||++||
T Consensus       160 P~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie~~l~  220 (220)
T cd00527         160 PKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG  220 (220)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=8.5e-63  Score=434.49  Aligned_cols=215  Identities=56%  Similarity=0.887  Sum_probs=211.7

Q ss_pred             eeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHH
Q 025981            4 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQH   83 (245)
Q Consensus         4 r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~   83 (245)
                      |++|+|||+||+|+++||+|||+|++.++++.+.|+|+|+  +++++++|+||++||+|+++|++|+|||+..++++++.
T Consensus         1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~   78 (215)
T TIGR00323         1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS   78 (215)
T ss_pred             CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence            6899999999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCC
Q 025981           84 LRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP  163 (245)
Q Consensus        84 l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p  163 (245)
                      |++.    ++|.+++++.+++||++++||++|++||.++++.++.|+|.|||+|++.+|++..++|+++++||+|+||||
T Consensus        79 l~e~----l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP  154 (215)
T TIGR00323        79 LPDS----LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHP  154 (215)
T ss_pred             hHhh----cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECC
Confidence            9986    678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981          164 HTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL  224 (245)
Q Consensus       164 ~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v  224 (245)
                      +++++|++.|+|+|||++.+||+|+|.++|||+++|||||++|||+||++|+++||++||+
T Consensus       155 ~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~l~~  215 (215)
T TIGR00323       155 QTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEALGL  215 (215)
T ss_pred             CCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999985

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=7.5e-61  Score=418.09  Aligned_cols=200  Identities=70%  Similarity=1.064  Sum_probs=197.7

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHH
Q 025981            3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQ   82 (245)
Q Consensus         3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~   82 (245)
                      .|++|+|||+||+|+++||+|||+|++.+++.++.|++.|+  +++++|+|++++++|+|++||+||+|||+.++|+|++
T Consensus         1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~   78 (200)
T smart00654        1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ   78 (200)
T ss_pred             CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence            38999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 025981           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH  162 (245)
Q Consensus        83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~  162 (245)
                      +|+++|+++++|.+++.+++|+||+++|||++||+||+++++.+|.|+|+||||++++||+|.++|||.+++||+|+|||
T Consensus        79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~  158 (200)
T smart00654       79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVH  158 (200)
T ss_pred             HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceE
Q 025981          163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTA  204 (245)
Q Consensus       163 p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~ga  204 (245)
                      |+++++|+++|+++|++|+..||||+|+++||+|++||||||
T Consensus       159 ~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~  200 (200)
T smart00654      159 PDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA  200 (200)
T ss_pred             CCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence            999999999999999999999999999999999999999996

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=1.1e-45  Score=322.79  Aligned_cols=173  Identities=20%  Similarity=0.220  Sum_probs=167.6

Q ss_pred             EEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHH
Q 025981           50 KTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEM  128 (245)
Q Consensus        50 ~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~  128 (245)
                      +++|+||++||+|+++|++|+|||+.++++|+++|++.|+  ++|.++. .+++++||++++||++||+||.++++..+.
T Consensus         2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~   79 (200)
T smart00654        2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQH   79 (200)
T ss_pred             eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHH
Confidence            6899999999999999999999999999999999999986  7787766 999999999999999999999999999999


Q ss_pred             HHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEE
Q 025981          129 IADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFC  206 (245)
Q Consensus       129 I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galv  206 (245)
                      |++.|+  ++|.+.+.. .+.+|+++++||+|+|+||+++++|+++|+++||||+.+||+ +|.++|||+++|||||++|
T Consensus        80 i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv  157 (200)
T smart00654       80 LRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLV  157 (200)
T ss_pred             HHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEE
Confidence            999997  999998887 999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhhCCcc
Q 025981          207 GSDTTATELSVIESVFKLRE  226 (245)
Q Consensus       207 g~~tT~~El~~Ie~~l~v~~  226 (245)
                      ||+||++|+++||++||++.
T Consensus       158 ~~~tt~~El~~ie~~l~v~~  177 (200)
T smart00654      158 HPDTSEEELKELSELLGVPL  177 (200)
T ss_pred             CCCCCHHHHHHHHHHhCCCc
Confidence            99999999999999999985

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=2.5e-45  Score=324.54  Aligned_cols=175  Identities=18%  Similarity=0.205  Sum_probs=168.1

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+||++||+|+++|++|+|+|+..+++..+.|++.|+.+++++++++.+| ++|.|++||+||+|||+.++++|
T Consensus        44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e  122 (220)
T cd00527          44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA  122 (220)
T ss_pred             cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence            78999999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCe
Q 025981           81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI-AGNILVGSYCSFSNRG  158 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G  158 (245)
                      +++|++.|+.  +|.+.+ .+.+++||+++|||++||+||+++++.++.|+|+||||+.++|+ +|+++|||.+++||+|
T Consensus       123 ~~~i~~~L~v--~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG  200 (220)
T cd00527         123 EEIIEDVLGV--EVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKG  200 (220)
T ss_pred             HHHHHHhcCC--cEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCE
Confidence            9999999865  455544 56999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             eeeCCCCCHHHHHHHhhhcC
Q 025981          159 GLVHPHTSIEDLDELSTLLQ  178 (245)
Q Consensus       159 ~LV~p~~~~eEl~~l~~~l~  178 (245)
                      +||||+++++|+++|+++|+
T Consensus       201 ~lvg~~tt~~El~~ie~~l~  220 (220)
T cd00527         201 AVVGSDTTGPELSRIEDALG  220 (220)
T ss_pred             EEECCCCCHHHHHHHHHHhC
Confidence            99999999999999999986

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=6.2e-45  Score=321.06  Aligned_cols=172  Identities=19%  Similarity=0.218  Sum_probs=165.9

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||+|+++||+|||+|++.+++..+.|+|.|+  +++++|+|   +++|.|++||+||+|||+.++++|
T Consensus        42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e  116 (215)
T TIGR00323        42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT  116 (215)
T ss_pred             cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence            7899999999999999999999999999999999999999999  99999999   999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCe
Q 025981           81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI-AGNILVGSYCSFSNRG  158 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G  158 (245)
                      +++|++.|+  ++|.+++ .+.+++|+++++||++|||||+++++.++.|+|+||||+.++|| +|.++|||.+++||+|
T Consensus       117 ~~~i~~~L~--v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G  194 (215)
T TIGR00323       117 EELISDVLG--VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKG  194 (215)
T ss_pred             HHHHHHhcC--CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCE
Confidence            999999986  5666666 89999999999999999999999999999999999999999999 5999999999999999


Q ss_pred             eeeCCCCCHHHHHHHhhhcCc
Q 025981          159 GLVHPHTSIEDLDELSTLLQV  179 (245)
Q Consensus       159 ~LV~p~~~~eEl~~l~~~l~V  179 (245)
                      +||||+++++|+++|+++|+.
T Consensus       195 ~lv~~~tt~~El~~ie~~l~~  215 (215)
T TIGR00323       195 AVVGLDTTGPELSIIEEALGL  215 (215)
T ss_pred             EEECCCCCHHHHHHHHHHhCc
Confidence            999999999999999999873

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=1.2e-43  Score=314.11  Aligned_cols=175  Identities=23%  Similarity=0.296  Sum_probs=169.1

Q ss_pred             EEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEE-EEecCCCCceeeEEEeeCceEEEecCCChhHH
Q 025981           48 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVV-QRIEERLSALGNCIACNDHVALTHTDLDRETE  126 (245)
Q Consensus        48 vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v-~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~  126 (245)
                      +++++|+||+.||+++++|++++|+|+.++++|+++|++.|.  +++ +..-.+.+++|+|+++||+++++||+++++..
T Consensus         2 i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~   79 (222)
T PRK04046          2 IRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEEL   79 (222)
T ss_pred             cEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHH
Confidence            689999999999999999999999999999999999999984  555 44568999999999999999999999999999


Q ss_pred             HHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEE
Q 025981          127 EMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFC  206 (245)
Q Consensus       127 ~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galv  206 (245)
                      +.|+|.|||+|+++++ +++++|+++++||+|+|+||.++++|++.|++.|||++.++|+ .|.+++||+++||||||+|
T Consensus        80 ~~l~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv  157 (222)
T PRK04046         80 ELLKEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLV  157 (222)
T ss_pred             HHHHHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEE
Confidence            9999999999999999 9999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhhCCcc
Q 025981          207 GSDTTATELSVIESVFKLRE  226 (245)
Q Consensus       207 g~~tT~~El~~Ie~~l~v~~  226 (245)
                      ||++|++|+++|+++||++.
T Consensus       158 ~p~~t~~ei~~i~~~l~v~~  177 (222)
T PRK04046        158 HPDATDEELKFLEDLFKVEV  177 (222)
T ss_pred             CCCCCHHHHHHHHHHhCCce
Confidence            99999999999999999985

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=246.42  Aligned_cols=127  Identities=14%  Similarity=0.250  Sum_probs=124.1

Q ss_pred             eCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhh
Q 025981            8 ENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNS   87 (245)
Q Consensus         8 ~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~   87 (245)
                      ..-+.||+|+++||+|||+||++++++.+.|+++|+  ||+++++|+|+++||++++|                      
T Consensus        99 ~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~----------------------  154 (247)
T PTZ00136         99 ERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLG--VEVFRTTIAGNVLVGTYCVF----------------------  154 (247)
T ss_pred             CccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCCceEEEEEEE----------------------
Confidence            456899999999999999999999999999999999  99999999999999999999                      


Q ss_pred             CCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec-CceeeeeEEEEcCCeeeeCCCCC
Q 025981           88 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIA-GNILVGSYCSFSNRGGLVHPHTS  166 (245)
Q Consensus        88 l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~LV~p~~~  166 (245)
                                             ||++|||||+++++..+.|+|+||||++++||+ |+++|||.+++||+|++|||+++
T Consensus       155 -----------------------Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT  211 (247)
T PTZ00136        155 -----------------------TNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTT  211 (247)
T ss_pred             -----------------------eCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCC
Confidence                                   999999999999999999999999999999995 99999999999999999999999


Q ss_pred             HHHHHHHhhhcCcce
Q 025981          167 IEDLDELSTLLQVPL  181 (245)
Q Consensus       167 ~eEl~~l~~~l~V~v  181 (245)
                      ++|+++|+++|+++.
T Consensus       212 ~~El~~Ie~~l~v~~  226 (247)
T PTZ00136        212 ATEISVIERIFKLRR  226 (247)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999999987

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=99.97  E-value=5.3e-31  Score=229.92  Aligned_cols=127  Identities=27%  Similarity=0.414  Sum_probs=109.5

Q ss_pred             CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe--------------------
Q 025981           99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG--------------------  158 (245)
Q Consensus        99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G--------------------  158 (245)
                      .+++++|+|+++||++||+||+++++..+.|++.|+||+++++|+|+++||+|+++|+||                    
T Consensus         6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~   85 (199)
T PF01912_consen    6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP   85 (199)
T ss_dssp             TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred             eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence            588999999999999999999999999999999999999999999999999999997777                    


Q ss_pred             ------------------------eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHH
Q 025981          159 ------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATE  214 (245)
Q Consensus       159 ------------------------~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~E  214 (245)
                                              +++||+.++++.+.|+|+|||++.++|+ +|.+.|||..++||+|++|||++|++|
T Consensus        86 ~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~ti-a~~~~VGs~~v~tn~G~LvhP~~s~eE  164 (199)
T PF01912_consen   86 DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTI-AGIKTVGSAAVATNKGGLVHPDASEEE  164 (199)
T ss_dssp             TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--B-TTBS-CCCSEEE-SSEEEE-TT--HHH
T ss_pred             CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEe-cCcccceeeEEEeCcEEEECCCCCHHH
Confidence                                    8888888888888999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHhhCCcc
Q 025981          215 LSVIESVFKLRE  226 (245)
Q Consensus       215 l~~Ie~~l~v~~  226 (245)
                      +++++++|+++.
T Consensus       165 l~~l~~~l~v~~  176 (199)
T PF01912_consen  165 LEELEELLGVPV  176 (199)
T ss_dssp             HHHHHHHHTSSE
T ss_pred             HHHHHHHhCCce
Confidence            999999999986

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.7e-29  Score=220.02  Aligned_cols=127  Identities=29%  Similarity=0.431  Sum_probs=123.6

Q ss_pred             CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe--------------------
Q 025981           99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG--------------------  158 (245)
Q Consensus        99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G--------------------  158 (245)
                      ++.+.||+|+.++|+||++||+++++.++.|+|+|+|||++++|+|+++||+++++|+||                    
T Consensus         9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~   88 (222)
T COG1976           9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG   88 (222)
T ss_pred             cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence            689999999999999999999999999999999999999999999999999999997666                    


Q ss_pred             -----------------------eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHH
Q 025981          159 -----------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATEL  215 (245)
Q Consensus       159 -----------------------~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El  215 (245)
                                             +|+||+.+++..|.++|.|||++.+||+ +|.+.|||..++|++|+||||+||++|+
T Consensus        89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El  167 (222)
T COG1976          89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL  167 (222)
T ss_pred             ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence                                   9999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhhCCcc
Q 025981          216 SVIESVFKLRE  226 (245)
Q Consensus       216 ~~Ie~~l~v~~  226 (245)
                      +++++.|||+.
T Consensus       168 e~Lse~f~V~v  178 (222)
T COG1976         168 EELSELFGVPV  178 (222)
T ss_pred             HHHHHHhCeeE
Confidence            99999999986

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=9.9e-19  Score=152.11  Aligned_cols=128  Identities=20%  Similarity=0.284  Sum_probs=125.6

Q ss_pred             CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 025981           99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL  176 (245)
Q Consensus        99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~  176 (245)
                      ++++.+|.|...++.||+|.-.-++......+..|+  +|++.++|+|++++|++|++|.+|+|||..++|+|++.|++.
T Consensus         8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS   87 (245)
T KOG3185|consen    8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS   87 (245)
T ss_pred             cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence            678999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981          177 LQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  226 (245)
Q Consensus       177 l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~  226 (245)
                      |.-++..-+|.....++|+.+.|||+-|+|||+...+.-+.|.|+||++.
T Consensus        88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV  137 (245)
T KOG3185|consen   88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV  137 (245)
T ss_pred             CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence            99999999999999999999999999999999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
3j2i_B	245	Structure Of Late Pre-60s Ribosomal Subunits With N		1e-105
1g62_A	224	Crystal Structure Of S.Cerevisiae Eif6 Length = 224		4e-99
4a18_J	248	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-94
4adx_I	222	The Cryo-Em Structure Of The Archaeal 50s Ribosomal		4e-23
1g61_A	228	Crystal Structure Of M.Jannaschii Eif6 Length = 228		8e-23

>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 245

Iteration: 1
 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/244 (71%), Positives = 208/244 (85%)
Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVP
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           LVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L++AQP ++   +R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240
Query: 241 IDSY 244
           I++Y
Sbjct: 241 IETY 244

>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 Length = 224

Iteration: 1
 Score =  357 bits (915), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 168/224 (75%), Positives = 193/224 (86%)
Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVP
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           LVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 248

Iteration: 1
 Score =  342 bits (877), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 197/241 (81%)
Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FENS ++GVF KLT+AYCLV++G SE+FYS FE+EL    PV+ TSIGGTRI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63
Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+  GNKNGLL+P+T  D EL+++RNSLPD V V+RIEE+LSALGNC+  ND+VAL H D
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123
Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRE+EE+IAD LGVEVFR TIA N+LVG+YC  +NRGGLVHP  S+E+LDEL+ LLQ+P
Sbjct: 124 LDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIP 183
Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           L AGT+NRGS+VI AGL VNDW AFCG DTT+TE+SV+E++FKL E +   + +EMRK  
Sbjct: 184 LCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243
Query: 241 I 241
           +
Sbjct: 244 V 244

>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6 Length = 222

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 5/227 (2%)
Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           M  R+    +  +GV+  +T++  L+     E F       L     V+K SI G+ + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58
Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
            L  GN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+    
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPL 115
Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V 
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVE 175
Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREA 227
              GTVN G  +I A    N      G +TT  EL+ IE      E 
Sbjct: 176 ADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222

>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 Length = 228

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 13/231 (5%)
Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEA-ELADVFPV--VKTSIGGTR 57
           M  R  F     +GV +  T    L+ I     F    +  E+++V     ++T+IGG+ 
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPI-----FLDKDDVNEVSEVLETKCLQTNIGGSS 57
Query: 58  IIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHV 114
           ++G L   NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  
Sbjct: 58  LVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKG 117
Query: 115 ALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELS 174
           AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L 
Sbjct: 118 ALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLK 176
Query: 175 TLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           +L +V  +  GT N+G+  + A +  N   A  G DTT  EL +IE    L
Sbjct: 177 SLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	1e-116
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	1e-109
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	1e-102
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	1e-100

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score =  330 bits (847), Expect = e-116
 Identities = 158/243 (65%), Positives = 198/243 (81%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MA R  FENS ++GVF KLT+AYCLV++G SE+FYS FE+EL    PV+ TSIGGTRI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+  GNKNGLL+P+T  D EL+++RNSLPD V V+RIEE+LSALGNC+  ND+VAL H D
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           LDRE+EE+IAD LGVEVFR TIA N+LVG+YC  +NRGGLVHP  S+E+LDEL+ LLQ+P
Sbjct: 124 LDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIP 183

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240
           L AGT+NRGS+VI AGL VNDW AFCG DTT+TE+SV+E++FKL E +   + +EMRK  
Sbjct: 184 LCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243

Query: 241 IDS 243
           + +
Sbjct: 244 VMN 246

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score =  313 bits (803), Expect = e-109
 Identities = 168/224 (75%), Positives = 193/224 (86%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVP
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           LVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score =  295 bits (756), Expect = e-102
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           M  R+    +  +GV+  +T++  L+     E F       L     V+K SI G+ + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
            L  GN NG ++ +   D+E+  L  +  +     RI ER +A+GN +  ND+ A+    
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPL 115

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V 
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVE 175

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREA 227
              GTVN G  +I A    N      G +TT  EL+ IE      E 
Sbjct: 176 ADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score =  289 bits (742), Expect = e-100
 Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           M  R  F     +GV +  T    L+ I   +   +     L      ++T+IGG+ ++G
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALT 117
            L   NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL 
Sbjct: 61  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 120

Query: 118 HTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL 177
             +L  + ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L +L 
Sbjct: 121 SPELK-DFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF 179

Query: 178 QVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           +V  +  GT N+G+  + A +  N   A  G DTT  EL +IE    L
Sbjct: 180 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	99.97
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	99.95

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=6.8e-87  Score=595.58  Aligned_cols=244  Identities=65%  Similarity=1.074  Sum_probs=224.4

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus         4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   83 (248)
T 4a18_J            4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE   83 (248)
T ss_dssp             CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred             ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||++||++++|+++++|+||+||||+|||++|||||++++++++.|+|+|||||+|++|||+++|||++++||+|+|
T Consensus        84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~L  163 (248)
T 4a18_J           84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGL  163 (248)
T ss_dssp             HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEE
T ss_pred             HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHh
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL  240 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~  240 (245)
                      |||.++++|+++|+++|+||+.+||+|+|+++||||++||||||+|||+||++|+++||++||+++++++++..+||++|
T Consensus       164 Vhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~  243 (248)
T 4a18_J          164 VHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF  243 (248)
T ss_dssp             ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHHTTCC---------------
T ss_pred             ECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             hhhc
Q 025981          241 IDSY  244 (245)
Q Consensus       241 ~~~~  244 (245)
                      ||+|
T Consensus       244 ~~~~  247 (248)
T 4a18_J          244 VMNL  247 (248)
T ss_dssp             ----
T ss_pred             Hhhc
Confidence            9987

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=4.5e-82  Score=557.84  Aligned_cols=224  Identities=75%  Similarity=1.153  Sum_probs=222.9

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus         1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (224)
T 1g62_A            1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||++||++++|+++++|++|+|||++|||++|||||++++++++.|+|+|||||+|++|||+++|||++++||+|+|
T Consensus        81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~L  160 (224)
T 1g62_A           81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL  160 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred             HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL  224 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v  224 (245)
                      |||+++++|+++|+++|+||+.+||+|+|.++||||++|||||++|||+||++|+++||++||+
T Consensus       161 VhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~f~v  224 (224)
T 1g62_A          161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999999986

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.4e-72  Score=497.34  Aligned_cols=221  Identities=33%  Similarity=0.494  Sum_probs=218.1

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus         1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e   78 (222)
T 4adx_I            1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE   78 (222)
T ss_pred             CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||+.   +++|.++++|++++||+++|||++|||||++++++++.|+|+|||+|++.+|++.++||+++++||+|+|
T Consensus        79 ~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~l  155 (222)
T 4adx_I           79 IDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGAL  155 (222)
T ss_pred             HHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEE
Confidence            9999983   7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  226 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~  226 (245)
                      |||+++++|+++|+++|+||+.+||+|+|+++||||++|||||++|||+||++||++||++||+.+
T Consensus       156 VhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~f~~~~  221 (222)
T 4adx_I          156 LNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE  221 (222)
T ss_pred             ECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999865

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=9.3e-72  Score=493.75  Aligned_cols=221  Identities=34%  Similarity=0.466  Sum_probs=219.0

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus         3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e   80 (228)
T 1g61_A            3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   80 (228)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence            8999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhC---CCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCC
Q 025981           81 LQHLRNSL---PDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNR  157 (245)
Q Consensus        81 l~~l~~~l---~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~  157 (245)
                      +++||++|   |++++|+++++|++++||+++|||++|||||++ ++.++.|+|+|+|+|++.+|++..++|++++++|+
T Consensus        81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~  159 (228)
T 1g61_A           81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK  159 (228)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred             HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceEEEEeCCccceeeEEEEecc
Confidence            99999998   789999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             eeeeCCCCCHHHHHHHhhhcCcc-eeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981          158 GGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL  224 (245)
Q Consensus       158 G~LV~p~~~~eEl~~l~~~l~V~-v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v  224 (245)
                      |+||||+++++|+++|+++|||| +.+||+|+|+++||||++|||||++|||+||++|+++||++||+
T Consensus       160 G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          160 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL  227 (228)
T ss_dssp             EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             eEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence            99999999999999999999999 99999999999999999999999999999999999999999997

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=5.3e-40  Score=289.70  Aligned_cols=172  Identities=22%  Similarity=0.252  Sum_probs=162.7

Q ss_pred             ceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHH
Q 025981            2 ATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQEL   81 (245)
Q Consensus         2 ~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El   81 (245)
                      +.|++|+||++||+|++.|++++|||++.+++..+.|++ ++  +++.+++ ++++.+|.|+++|+||+|||+.++++|+
T Consensus        46 ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~--v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~  121 (222)
T 4adx_I           46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AG--VEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDAL  121 (222)
T ss_pred             EEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cC--CeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHH
Confidence            478999999999999999999999999999999999999 57  9999999 9999999999999999999999999999


Q ss_pred             HHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec-CceeeeeEEEEcCCee
Q 025981           82 QHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIA-GNILVGSYCSFSNRGG  159 (245)
Q Consensus        82 ~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~  159 (245)
                      +.|++.|+  ++|.+.. .+++++||++++||++|||||+++++..+.|+|+||||+.++|++ |+++|||.+++||+|+
T Consensus       122 e~I~d~L~--VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~  199 (222)
T 4adx_I          122 QVIGDVLE--VDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGV  199 (222)
T ss_pred             HHHHHhhC--ccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEE
Confidence            99999985  5554432 469999999999999999999999999999999999999999997 9999999999999999


Q ss_pred             eeCCCCCHHHHHHHhhhcCc
Q 025981          160 LVHPHTSIEDLDELSTLLQV  179 (245)
Q Consensus       160 LV~p~~~~eEl~~l~~~l~V  179 (245)
                      +|||+++++|+++|+++|+.
T Consensus       200 lvg~~TT~~El~~ie~~f~~  219 (222)
T 4adx_I          200 LVGEETTGPELARIEEALGF  219 (222)
T ss_pred             EECCCCCHHHHHHHHHHhcc
Confidence            99999999999999999984

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=2.9e-37  Score=273.18  Aligned_cols=172  Identities=20%  Similarity=0.207  Sum_probs=159.5

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhc---CC--CcEEEEeecCceeEeEEeeeeCCeEEecCCCC
Q 025981            3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELA---DV--FPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTT   77 (245)
Q Consensus         3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~---~~--v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~   77 (245)
                      .|.+|+||++||+|++.|++++|||++.+++.++.|++.|+   +.  ++++++   +++.+|.++++|+||+|||+-. 
T Consensus        49 v~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~---~~~alGnli~~Nd~galV~~el-  124 (228)
T 1g61_A           49 LQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPEL-  124 (228)
T ss_dssp             EECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGG-
T ss_pred             EEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcC---CCcceEEEEEecCccEEeCHHH-
Confidence            58899999999999999999999999999999999999984   22  556765   9999999999999999999966 


Q ss_pred             HHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCc-eEEEeec-CceeeeeEEEEc
Q 025981           78 DQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIA-GNILVGSYCSFS  155 (245)
Q Consensus        78 d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVe-V~~~tIa-g~~lVGs~~v~N  155 (245)
                      ++..+.|++.|+.++.++++.++.++.||.+++| ++|||||+++++..+.|+|+|||| +.++|++ |+++|||.+++|
T Consensus       125 ~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN-~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaN  203 (228)
T 1g61_A          125 KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTN-KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIAN  203 (228)
T ss_dssp             GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECS-SEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEEC
T ss_pred             HHHHHHHHHhcCCceEEEEeCCccceeeEEEEec-ceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEE
Confidence            5555677778777777888999999999999999 999999999999999999999999 9999999 999999999999


Q ss_pred             CCeeeeCCCCCHHHHHHHhhhcCc
Q 025981          156 NRGGLVHPHTSIEDLDELSTLLQV  179 (245)
Q Consensus       156 n~G~LV~p~~~~eEl~~l~~~l~V  179 (245)
                      |+|++|||+++++|+++|+++|++
T Consensus       204 n~G~lvg~~TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          204 SKGAVVGGDTTGPELLIIEDALGL  227 (228)
T ss_dssp             SSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCCHHHHHHHHHHhcc
Confidence            999999999999999999999986

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=99.97  E-value=3.6e-32  Score=239.87  Aligned_cols=125  Identities=17%  Similarity=0.261  Sum_probs=122.0

Q ss_pred             eCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhh
Q 025981            8 ENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNS   87 (245)
Q Consensus         8 ~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~   87 (245)
                      ..-++||+|+++||+||||||++++++++.|+++|+  ||+++++|+|+++||++++||+                    
T Consensus        99 ~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn--------------------  156 (224)
T 1g62_A           99 ERLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSN--------------------  156 (224)
T ss_dssp             CCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECS--------------------
T ss_pred             CcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCcceEEEEEEEeC--------------------
Confidence            356899999999999999999999999999999999  9999999999999999999995                    


Q ss_pred             CCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCeeeeCCCCC
Q 025981           88 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHTS  166 (245)
Q Consensus        88 l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LV~p~~~  166 (245)
                                               ++|||||+++++..+.|+|+||||+.++|| +|+++|||.+++||+|+||||+++
T Consensus       157 -------------------------~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT  211 (224)
T 1g62_A          157 -------------------------QGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTT  211 (224)
T ss_dssp             -------------------------SCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCC
T ss_pred             -------------------------cEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCC
Confidence                                     999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHhhhcCc
Q 025981          167 IEDLDELSTLLQV  179 (245)
Q Consensus       167 ~eEl~~l~~~l~V  179 (245)
                      ++|+++|+++|++
T Consensus       212 ~~El~~Ie~~f~v  224 (224)
T 1g62_A          212 APELSVIESIFRL  224 (224)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCc
Confidence            9999999999986

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=99.95  E-value=1.1e-27  Score=213.98  Aligned_cols=128  Identities=15%  Similarity=0.193  Sum_probs=124.3

Q ss_pred             CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 025981           99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL  176 (245)
Q Consensus        99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~  176 (245)
                      ++++.+|+|+.+||+|||+||+.+++..+.+++.|+  +|+++++|+|+++||+++++|+||+|||+.++|+|++.|++.
T Consensus        11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~   90 (248)
T 4a18_J           11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS   90 (248)
T ss_dssp             TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence            689999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981          177 LQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  226 (245)
Q Consensus       177 l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~  226 (245)
                      |+-.+...++....+++|+.++|||++|++||+.+.+..+.|+|+||++.
T Consensus        91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV  140 (248)
T 4a18_J           91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEV  140 (248)
T ss_dssp             SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEE
T ss_pred             CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcE
Confidence            87666679999999999999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	1e-119
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	1e-110

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  338 bits (868), Expect = e-119
 Identities = 168/224 (75%), Positives = 193/224 (86%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120
           R+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVP
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           LVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  313 bits (804), Expect = e-110
 Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60
           M  R  F     +GV +  T    L+ I   +   +     L      ++T+IGG+ ++G
Sbjct: 1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 58

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALT 117
            L   NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL 
Sbjct: 59  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 118

Query: 118 HTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL 177
             +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L +L 
Sbjct: 119 SPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF 177

Query: 178 QVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224
           +V  +  GT N+G+  + A +  N   A  G DTT  EL +IE    L
Sbjct: 178 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	99.95
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	99.95

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-82  Score=558.27  Aligned_cols=224  Identities=75%  Similarity=1.153  Sum_probs=222.7

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+++|+.++|+++|+|+||++||+|++||+||+|||++++|+|
T Consensus         1 M~~r~~f~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~E   80 (224)
T d1g62a_           1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||+++|++++|+++++|+||+||+|+|||++|+|||+++++++|.|+|+|||||+|++|||.++|||++++||+|+|
T Consensus        81 l~~L~~~l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~tiag~~~VGs~~v~tn~G~L  160 (224)
T d1g62a_          81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL  160 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred             HHHHHhhCCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEEecCccceeeEEEEcCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981          161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL  224 (245)
Q Consensus       161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v  224 (245)
                      +||+++++|+++|+++|+||+..||||+|+++||||++||||||+||.+||++||.|||++||+
T Consensus       161 vhP~~t~~E~~~l~~~l~V~~~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~~~~l  224 (224)
T d1g62a_         161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred             ecCCCCHHHHHHHHHHhCCCcccceeeCCCCCceeEEEEcCceEEEcCCCCcHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999985

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.1e-80  Score=544.74  Aligned_cols=221  Identities=34%  Similarity=0.477  Sum_probs=216.8

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981            1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||||||++++|+|
T Consensus         1 Mi~r~~~~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~--v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   78 (225)
T d1g61a_           1 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   78 (225)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCC---CeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCC
Q 025981           81 LQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNR  157 (245)
Q Consensus        81 l~~l~~~l~~---~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~  157 (245)
                      +++||++||+   +++|+++++|+||+||+|+|||++|+|||++ +++.|.|+|+|||||+|++|||.++|||++++||+
T Consensus        79 l~~l~~~l~~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l-~e~~e~I~dvL~Vev~r~~iag~~~VGs~~v~tn~  157 (225)
T d1g61a_          79 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK  157 (225)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred             HHHHHhhcccccCCceEEEeCCcccccccEEEEcCcceEecccc-chHHHHHHHhhCceEEEEEeCCcccceeEEEEecc
Confidence            9999999975   5999999999999999999999999999999 57899999999999999999999999999999999


Q ss_pred             eeeeCCCCCHHHHHHHhhhcCcc-eeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981          158 GGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL  224 (245)
Q Consensus       158 G~LV~p~~~~eEl~~l~~~l~V~-v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v  224 (245)
                      |+|+||+++++|+++|+++|||| +..||||+|+++||||++||||||+||.+||++||.|||++||+
T Consensus       158 G~LvhP~~s~~E~~~l~~~l~V~~v~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~a~~l  225 (225)
T d1g61a_         158 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL  225 (225)
T ss_dssp             EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcccccceeCCCCCceeEEEEcCceEEEcCCCchHHHHHHHHHhCC
Confidence            99999999999999999999999 57899999999999999999999999999999999999999985

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.3e-29  Score=216.86  Aligned_cols=128  Identities=20%  Similarity=0.258  Sum_probs=124.1

Q ss_pred             CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 025981           99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL  176 (245)
Q Consensus        99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~  176 (245)
                      ++++++|+|+.+||+||++||+.+++..+.+++.|+  +|+++++|+|++++|+++++|+||+|||..++|+|+++|++.
T Consensus         8 ~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~   87 (224)
T d1g62a_           8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhh
Confidence            689999999999999999999999999999999998  999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981          177 LQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  226 (245)
Q Consensus       177 l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~  226 (245)
                      ++-.+....+..+.+++|+.|+|||+||++||+.+.+..+.|+|+||++.
T Consensus        88 l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev  137 (224)
T d1g62a_          88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV  137 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred             CCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceE
Confidence            97666779999999999999999999999999999999999999999986

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=5.1e-29  Score=217.56  Aligned_cols=125  Identities=20%  Similarity=0.346  Sum_probs=115.9

Q ss_pred             CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe--------------------
Q 025981           99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG--------------------  158 (245)
Q Consensus        99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G--------------------  158 (245)
                      ++.+++|+|+.+||++|++||+++++..+.|++.|++|+++++|+|++++|+++++|+||                    
T Consensus         8 ~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~   87 (225)
T d1g61a_           8 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK   87 (225)
T ss_dssp             TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcc
Confidence            689999999999999999999999999999999999999999999999999999998888                    


Q ss_pred             ----------------------------eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCC
Q 025981          159 ----------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDT  210 (245)
Q Consensus       159 ----------------------------~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~t  210 (245)
                                                  ++|||+.+ ++.+.|+++|||++.++++ +|...|||..++|++|+++||++
T Consensus        88 ~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~-e~~e~I~dvL~Vev~r~~i-ag~~~VGs~~v~tn~G~LvhP~~  165 (225)
T d1g61a_          88 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDSLNVEVEIGTI-AELPTVGSNAVVTNKGCLTHPLV  165 (225)
T ss_dssp             HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGG-GGHHHHHHHHCSEEEECCB-TTBSCTTTSEEECSSEEEECTTC
T ss_pred             cccCCceEEEeCCcccccccEEEEcCcceEeccccc-hHHHHHHHhhCceEEEEEe-CCcccceeEEEEeccceEECCCC
Confidence                                        55666663 3455567889999999998 99999999999999999999999


Q ss_pred             CHHHHHHHHHhhCCc
Q 025981          211 TATELSVIESVFKLR  225 (245)
Q Consensus       211 T~~El~~Ie~~l~v~  225 (245)
                      |.+|++.|++.|+++
T Consensus       166 s~~E~~~l~~~l~V~  180 (225)
T d1g61a_         166 EDDELEFLKSLFKVE  180 (225)
T ss_dssp             CHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999999998