Citrus Sinensis ID: 025985

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVEKKRPPRVLRRVQSAEW
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccccHHHHHHEccccccccccccHHcccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
MTVDGILRNvyntttasttdatLLDAQITLvdtnsnlianendqngavsagamkSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAgavedsaggddmdVKAFANVTERlsggvyafdqpaaaspfqveGAIVGFGngvevvggrgkrgrvmlepLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVpvvekkrpprvlrrvQSAEW
Flexible Loop (DISEMBL)
mtvdgilrnvyntttasttdatlLDAQITLVDTNSNLIanendqngavsagamksvDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVggrgkrgrvmlepldkaaqqrqRRMIKNResaarsrerkqAYQVELESLAVRLEEENEQLLKEKAERTKERykqlmekvvpvvekkrpprvlrrvqsaew
Low Complexity Region (SEG)
MTVDGILRNVYNtttasttdatlldaQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIvgfgngvevvggrgkrgrvMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRleeeneqllkekaeRTKERYKQLMekvvpvvekkrpprvlrrvQSAEW
Disordered region (IsUnstruct)
****GILRNVYNTTTASTTDATLLDAQITLVDTNSNLIA****************VDDVWREIV******************EDFLAK************MDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRG************************************************************************************************
Disordered Region (DISOPRED)
MTVDGILRNVYNT*********************************************VW*************************LAKAG************************************************************************************************YQVELESLAVRLEEEN************************************RVQS***
Disordered Region (DISEMBL)
MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDK************************AYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVEKKRPPRVLRRVQSAEW
Disordered Region (DISPRO)
*TVDGILRNVYNTTTA**************************************SVDDVWREIVS**************MTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEV************E**DK****************ARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVEKKR*******V*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVPVVEKKRPPRVLRRVQSAEW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
P42777	270	G-box-binding factor 4 OS	no	no	0.734	0.666	0.641	6e-54
Q9LES3	297	ABSCISIC ACID-INSENSITIVE	no	no	0.722	0.595	0.360	4e-20
Q9C5Q2	262	ABSCISIC ACID-INSENSITIVE	no	no	0.697	0.652	0.372	1e-15
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.8	0.443	0.296	1e-14
Q9M7Q5	392	ABSCISIC ACID-INSENSITIVE	no	no	0.4	0.25	0.452	4e-13
Q9M7Q4	416	ABSCISIC ACID-INSENSITIVE	no	no	0.346	0.204	0.471	5e-12
Q9M7Q3	454	ABSCISIC ACID-INSENSITIVE	no	no	0.269	0.145	0.448	7e-12
Q9M7Q2	431	ABSCISIC ACID-INSENSITIVE	no	no	0.404	0.229	0.442	7e-12
Q6ZDF3	318	bZIP transcription factor	no	no	0.477	0.367	0.354	2e-11
Q8RYD6	331	ABSCISIC ACID-INSENSITIVE	no	no	0.775	0.574	0.314	8e-09

>sp|P42777|GBF4_ARATH G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1

 Score =  210 bits (535), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 127/198 (64%), Positives = 145/198 (73%), Gaps = 18/198 (9%)

Query: 54  KSVDDVWREIVSGEKKE--MKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTE 111
           KSVDDVW+EIVSGE+K   MKEE  +++MTLEDFLAKA    D    D++DVK     TE
Sbjct: 85  KSVDDVWKEIVSGEQKTIMMKEEEPEDIMTLEDFLAKAEM--DEGASDEIDVKI---PTE 139

Query: 112 RLSG-GVYAFDQPAA-ASPFQ-VEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQR 168
           RL+  G Y FD P    S FQ VEG++   G GV     RGKRGRVM+E +DKAA QRQ+
Sbjct: 140 RLNNDGSYTFDFPMQRHSSFQMVEGSM---GGGV----TRGKRGRVMMEAMDKAAAQRQK 192

Query: 169 RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVV 228
           RMIKNRESAARSRERKQAYQVELE+LA +LEEENEQLLKE  E TKERYK+LME ++PV 
Sbjct: 193 RMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEVLIPVD 252

Query: 229 EKKRPP-RVLRRVQSAEW 245
           EK RPP R L R  S EW
Sbjct: 253 EKPRPPSRPLSRSHSLEW 270

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LES3|AI5L2_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 112/222 (50%), Gaps = 45/222 (20%)

Query: 54  KSVDDVWREIV------SGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMD----- 102
           K+VD+VW++I       S  ++  K+  + EM TLED L KAG V ++  G + D     
Sbjct: 91  KTVDEVWKDIQQNKNGGSAHERRDKQPTLGEM-TLEDLLLKAGVVTETIPGSNHDGPVGG 149

Query: 103 ------VKAFANVTERLSGGVY----AFDQPAAASPFQV--------EGAIVGFGNGVEV 144
                      N+T+      Y    +  QP A  P+ V        + +++G  +  + 
Sbjct: 150 GSAGSGAGLGQNITQVGPWIQYHQLPSMPQPQAFMPYPVSDMQAMVSQSSLMGGLSDTQT 209

Query: 145 VGGRGKRGRVML-EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENE 203
            G    R RV   E ++K  ++RQ+RMIKNRESAARSR RKQAY  ELE    RLEEENE
Sbjct: 210 PG----RKRVASGEVVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENE 265

Query: 204 QLLKEKAERTKERYKQLMEKVVPVVEKKRPPRVLRRVQSAEW 245
           +L K+K           +EK++P V    P R LRR  SA +
Sbjct: 266 RLRKQKE----------VEKILPSVPPPDPKRQLRRTSSAPF 297

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q2|AI5L3_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana GN=DPBF4 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 98/204 (48%), Gaps = 33/204 (16%)

Query: 54  KSVDDVWREIVSGEK-------KEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAF 106
           K+VD+VWR+I   +           K+  + E+ TLED L +AG V ++       V   
Sbjct: 76  KTVDEVWRDIQQDKNGNGTSTTTTHKQPTLGEI-TLEDLLLRAGVVTET-------VVPQ 127

Query: 107 ANVTERLSGGVYA--FDQPAAASPFQVEGA-----IVGFGNGVEVVGGRGKRGRVMLEPL 159
            NV    S G +     QP     F          +V  G   +     G R RV  E +
Sbjct: 128 ENVVNIASNGQWVEYHHQPQQQQGFMTYPVCEMQDMVMMGGLSDTPQAPG-RKRVAGEIV 186

Query: 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQ 219
           +K  ++RQ+RMIKNRESAARSR RKQAY  ELE    RLEEENE+L      R KE    
Sbjct: 187 EKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKL-----RRLKE---- 237

Query: 220 LMEKVVPVVEKKRPPRVLRRVQSA 243
            +EK++P      P   LRR  SA
Sbjct: 238 -VEKILPSEPPPDPKWKLRRTNSA 260

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 122/300 (40%), Gaps = 104/300 (34%)

Query: 34  NSNLIANEND--QNGAVSAGAM---KSVDDVWREIV------------------------ 64
           N   IANE+   + G+++  A    K+VD+VW EI                         
Sbjct: 130 NKRGIANESSLPRQGSLTLPAPLCRKTVDEVWSEIHRGGGSGNGGDSNGRSSSSNGQNNA 189

Query: 65  -SGEKKEMKEEAIDEMMTLEDFLAKAGAVED----------------------------- 94
            +G +   ++    EM TLEDFL KAG V +                             
Sbjct: 190 QNGGETAARQPTFGEM-TLEDFLVKAGVVREHPTNPKPNPNPNQNQNPSSVIPAAAQQQL 248

Query: 95  ----------SAGGDDMDVKAFANVTERLSGGVYAFDQPAAA------------------ 126
                     S  G  M V   +   +R  GG Y    P  A                  
Sbjct: 249 YGVFQGTGDPSFPGQAMGVGDPSGYAKRTGGGGYQQAPPVQAGVCYGGGVGFGAGGQQMG 308

Query: 127 -----SPFQVEGAIVGFGN--------GVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKN 173
                SP   +G  +G G         GV++ G RG++ RV+  P++K  ++RQRRMIKN
Sbjct: 309 MVGPLSPVSSDG--LGHGQVDNIGGQYGVDMGGLRGRK-RVVDGPVEKVVERRQRRMIKN 365

Query: 174 RESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVEKKRP 233
           RESAARSR RKQAY VELE+   +L+EEN QL    AE  ++R +Q  E +    + K P
Sbjct: 366 RESAARSRARKQAYTVELEAELNQLKEENAQLKHALAELERKRKQQYFESLKSRAQPKLP 425

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana GN=ABF1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 8/106 (7%)

Query: 142 VEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEE 201
           V  V GRG+R    LE   K  ++RQ+RMIKNRESAARSR RKQAY +ELE+    L+  
Sbjct: 293 VPYVFGRGRRSNTGLE---KVVERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLV 349

Query: 202 NEQLLKEKAERTKERYKQLME--KVVPVVEKKRPPRVLRRVQSAEW 245
           N+ L K++AE  K    +L E  K  P++ K+   + LRR  +  W
Sbjct: 350 NQDLQKKQAEIMKTHNSELKEFSKQPPLLAKR---QCLRRTLTGPW 392

Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 2/87 (2%)

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYK 218
           ++K  ++RQRRMIKNRESAARSR RKQAY VELE+   +L+EEN++L +++A R  E  K
Sbjct: 332 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQA-RIMEMQK 390

Query: 219 QLMEKVVPVVEKKRPPRVLRRVQSAEW 245
               ++  +++   P + LRR +S  W
Sbjct: 391 NQETEMRNLLQGG-PKKKLRRTESGPW 416

Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q3|AI5L6_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 57/87 (65%)

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYK 218
           L+K  ++RQ+RMIKNRESAARSR RKQAY +ELE+   +L+E NE+L K++ E  +++  
Sbjct: 368 LEKVIERRQKRMIKNRESAARSRARKQAYTMELEAEIAQLKELNEELQKKQVEIMEKQKN 427

Query: 219 QLMEKVVPVVEKKRPPRVLRRVQSAEW 245
           QL+E +          + LRR  +  W
Sbjct: 428 QLLEPLRQPWGMGCKRQCLRRTLTGPW 454

Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q2|AI5L7_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 7 OS=Arabidopsis thaliana GN=ABF4 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 5/104 (4%)

Query: 142 VEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEE 201
           V  V  RG+R    LE   K  ++RQRRMIKNRESAARSR RKQAY +ELE+   +L++ 
Sbjct: 333 VPYVLNRGRRSNTGLE---KVIERRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKT 389

Query: 202 NEQLLKEKAERTKERYKQLMEKVVPVVEKKRPPRVLRRVQSAEW 245
           N++L K++AE  + +  +L E        KR  + LRR  +  W
Sbjct: 390 NQELQKKQAEMVEMQKNELKETSKRPWGSKR--QCLRRTLTGPW 431

Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZDF3|TRAB1_ORYSJ bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica GN=TRAB1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 76/161 (47%), Gaps = 44/161 (27%)

Query: 94  DSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGR 153
           DSAG  D D+ +                 P A  P+  EG I G  +G  V         
Sbjct: 193 DSAGKGDGDLSS-----------------PMAPVPYPFEGVIRGRRSGGNV--------- 226

Query: 154 VMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLK---EKA 210
                 +K  ++RQRRMIKNRESAARSR RKQAY +ELE+   +L+E+N +L K   E  
Sbjct: 227 ------EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEIM 280

Query: 211 ERTKERYKQLMEKVV------PVVEKKRPPRVLRRVQSAEW 245
           E  K  + ++ +  V      P  +KK   R LRR  +  W
Sbjct: 281 EMQKNFFPEMQKNQVLEAVNNPYGQKK---RCLRRTLTGPW 318

Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RYD6|AI5L1_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Arabidopsis thaliana GN=DPBF2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 36/226 (15%)

Query: 54  KSVDDVWREIVSGEKKE--------------MKEEAIDEMMTLEDFLAKAGAVED----- 94
           K+VD+VW EI +G ++                +++ + E+ TLEDFL KAG V++     
Sbjct: 108 KTVDEVWLEIQNGVQQHPPSSNSGQNSAENIRRQQTLGEI-TLEDFLVKAGVVQEPLKTT 166

Query: 95  -----SAGGDDMDVKAFANVTERLSGG----VYAFDQPAAASPFQVEGAIVGFGNGVEVV 145
                S  G + +     +   + + G    VY+ ++P  +   +    + G G   + +
Sbjct: 167 MRMSSSDFGYNPEFGVGLHCQNQNNYGDNRSVYSENRPFYSVLGESSSCMTGNGRSNQYL 226

Query: 146 GG----RGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEE 201
            G    R K+ R++  P +   ++RQRRMIKNRESAARSR R+QAY VELE     L EE
Sbjct: 227 TGLDAFRIKK-RIIDGPPEILMERRQRRMIKNRESAARSRARRQAYTVELELELNNLTEE 285

Query: 202 NEQLLKEKAERTKERYKQLMEKVVPVVEKKRPPRV--LRRVQSAEW 245
           N +L +   E  K+R ++++ +   V ++K   ++  +RR+ SA W
Sbjct: 286 NTKLKEIVEENEKKRRQEIISRSKQVTKEKSGDKLRKIRRMASAGW 331

Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
225460656	275	PREDICTED: G-box-binding factor 4 [Vitis	0.955	0.850	0.670	2e-83
449497099	301	PREDICTED: G-box-binding factor 4-like [	0.951	0.774	0.622	7e-74
449446409	314	PREDICTED: G-box-binding factor 4-like [	0.951	0.742	0.588	4e-72
224085121	314	predicted protein [Populus trichocarpa]	0.963	0.751	0.636	1e-68
21554353	315	unknown [Arabidopsis thaliana]	0.951	0.739	0.557	1e-64
15240086	315	basic leucine zipper transcription facto	0.951	0.739	0.553	2e-64
296081185	165	unnamed protein product [Vitis vinifera]	0.665	0.987	0.75	7e-63
297791457	308	hypothetical protein ARALYDRAFT_494588 [	0.959	0.762	0.539	5e-61
207999344	314	basic-leucine zipper [Humulus lupulus]	0.971	0.757	0.631	2e-60
312283399	323	unnamed protein product [Thellungiella h	0.971	0.736	0.551	6e-59

>gi|225460656|ref|XP_002266826.1| PREDICTED: G-box-binding factor 4 [Vitis vinifera]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/249 (67%), Positives = 205/249 (82%), Gaps = 15/249 (6%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVW 60
           MTVDG+LRNVY  + A  +++TL+DA+ITLVD+ +  +A   +  GA +A   K+VDDVW
Sbjct: 38  MTVDGLLRNVY--SAAPPSESTLVDAEITLVDSGTGAMA---ELEGAPAA---KTVDDVW 89

Query: 61  REIVSGE--KKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVY 118
           REIV+G   ++E KEE  D+MMTLEDFLAKAGAVE+   G+D DVK    VT+RLSGG++
Sbjct: 90  REIVAGGGGRRECKEEVEDDMMTLEDFLAKAGAVEEE--GEDRDVK-VPLVTQRLSGGIF 146

Query: 119 AFDQ--PAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRES 176
           AFD   P+  +P QVEG+++GFGNG+E+VGGRGKR   +LEPLDKAAQQ+QRRMIKNRES
Sbjct: 147 AFDPVPPSPITPAQVEGSVIGFGNGMEIVGGRGKRRAPVLEPLDKAAQQKQRRMIKNRES 206

Query: 177 AARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVEKKRPPRV 236
           AARSRERKQAYQVELES AVRLEEENEQLLKEKAER+KER KQLMEK++PVVE+++P RV
Sbjct: 207 AARSRERKQAYQVELESSAVRLEEENEQLLKEKAERSKERLKQLMEKIIPVVERRKPARV 266

Query: 237 LRRVQSAEW 245
           LRRV+S EW
Sbjct: 267 LRRVRSMEW 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497099|ref|XP_004160311.1| PREDICTED: G-box-binding factor 4-like [Cucumis sativus]

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 160/257 (62%), Positives = 195/257 (75%), Gaps = 24/257 (9%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD---TNSNLIANENDQNGAVSAGAMKSVD 57
           MTVDG+L N +++    T  + LLDAQITLVD   TNS+ + + N  + +V A   K+VD
Sbjct: 57  MTVDGLLPNAFDSN--PTESSILLDAQITLVDPTTTNSSAVIDSNHNSSSV-APPPKTVD 113

Query: 58  DVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGV 117
           DVWREIVSGE+KE+KEE  +E++TLEDFL K+GAV         DVK F   TERLSGG+
Sbjct: 114 DVWREIVSGERKELKEEVANEIITLEDFLMKSGAVPVE------DVK-FPQ-TERLSGGI 165

Query: 118 YAFDQPAAASPFQ----VEGAIVGFGNGVEVVGGRGKRGR-----VMLEPLDKAAQQRQR 168
           ++FD P  ++ FQ    +EG+I+GF NGV+++G  G  GR       LEPLDKAA+QRQR
Sbjct: 166 FSFD-PIPSTTFQALDKIEGSIIGFANGVDLIGSGGSGGRGKRGRAALEPLDKAAEQRQR 224

Query: 169 RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVV 228
           RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL+EKAERTKER KQLM+KV+PVV
Sbjct: 225 RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLREKAERTKERLKQLMDKVIPVV 284

Query: 229 EKKRPPRVLRRVQSAEW 245
           EK+RP RV+RRV S +W
Sbjct: 285 EKRRPQRVIRRVNSMQW 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446409|ref|XP_004140964.1| PREDICTED: G-box-binding factor 4-like [Cucumis sativus]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 159/270 (58%), Positives = 195/270 (72%), Gaps = 37/270 (13%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDT----------------NSNLIANENDQ 44
           MTVDG+L N +++    T  + LLDAQITLVD+                NS+ + + N  
Sbjct: 57  MTVDGLLPNAFDSNP--TESSILLDAQITLVDSPNPSSLHIDTTTPTTTNSSAVIDSNHN 114

Query: 45  NGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVK 104
           + +V A   K+VDDVWREIVSGE+KE+KEE  +E++TLEDFL K+GAV         DVK
Sbjct: 115 SSSV-APPPKTVDDVWREIVSGERKELKEEVANEIITLEDFLMKSGAVPVE------DVK 167

Query: 105 AFANVTERLSGGVYAFDQPAAASPFQ----VEGAIVGFGNGVEVVGGRGKRGR-----VM 155
            F   TERLSGG+++FD P  ++ FQ    +EG+I+GF NGV+++G  G  GR       
Sbjct: 168 -FPQ-TERLSGGIFSFD-PIPSTTFQALDKIEGSIIGFANGVDLIGSGGSGGRGKRGRAA 224

Query: 156 LEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215
           LEPLDKAA+QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL+EKAERTKE
Sbjct: 225 LEPLDKAAEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLREKAERTKE 284

Query: 216 RYKQLMEKVVPVVEKKRPPRVLRRVQSAEW 245
           R KQLM+KV+PVVEK+RP RV+RRV S +W
Sbjct: 285 RLKQLMDKVIPVVEKRRPQRVIRRVNSMQW 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085121|ref|XP_002307500.1| predicted protein [Populus trichocarpa] gi|222856949|gb|EEE94496.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 170/267 (63%), Positives = 192/267 (71%), Gaps = 31/267 (11%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGA-------VSAGAM 53
           MTVDGILRNVY    + +T++TLL AQITL++T +       + NG        V     
Sbjct: 57  MTVDGILRNVY---ASPSTESTLLGAQITLMETPNPPPPPPIETNGTDNQDMSVVIPQET 113

Query: 54  KSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERL 113
           K+ DD+WREIV+G +KEMK+E  DEMMTLEDFLAKAGAV D  G D  DVK      ERL
Sbjct: 114 KTADDIWREIVAG-RKEMKDEP-DEMMTLEDFLAKAGAV-DVVGEDGDDVKMPQ--PERL 168

Query: 114 SGGVYAFDQPAAASPFQV----EGAIVGFGNGVEV-----------VGGRGKRGRVMLEP 158
           SGG+YAFD P   S FQV    EG+IVGFGNGVEV            G   +   V++EP
Sbjct: 169 SGGLYAFD-PVPPSAFQVLDKVEGSIVGFGNGVEVELVAGSGGGGGGGRGKRGRTVVMEP 227

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYK 218
           LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK ERTKER+K
Sbjct: 228 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKEERTKERFK 287

Query: 219 QLMEKVVPVVEKKRPPRVLRRVQSAEW 245
           QLMEKV+PVVEK+RP RVLRRV S +W
Sbjct: 288 QLMEKVIPVVEKRRPRRVLRRVNSLQW 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554353|gb|AAM63460.1| unknown [Arabidopsis thaliana]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 150/269 (55%), Positives = 187/269 (69%), Gaps = 36/269 (13%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD-----------TNSNLIANENDQNGAVS 49
           MTV+GIL + + +   + T+++LLDA I L+D           T S+++   +   G  +
Sbjct: 59  MTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITTTTASDVV---DHGGGTET 115

Query: 50  AGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVED----SAGGDDMDVKA 105
               KSVD+VWRE+VSGE K MKEE  +E+MTLEDFLAKA AVED    +A  +D+DVK 
Sbjct: 116 TRGGKSVDEVWREMVSGEGKGMKEETSEEIMTLEDFLAKA-AVEDETAVTASAEDLDVKI 174

Query: 106 FANVTERLSGGVYAFDQPAAA-SPFQ----VEGAIVGFGNGVEVVGG--RGKRGRVMLEP 158
              VT       Y FD  A   +PFQ    VEG+IV FGNG++V GG  RGKR RVM+EP
Sbjct: 175 --PVTN------YGFDHSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGARGKRARVMVEP 226

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYK 218
           LDKAA QRQRRMIKNRESAARSRERKQAYQVELE+LA +LEEENE L KE  ++ KERY+
Sbjct: 227 LDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQ 286

Query: 219 QLMEKVVPVVE--KKRPPRVLRRVQSAEW 245
           +LME V+PVVE  K++PPR LRR++S EW
Sbjct: 287 KLMEFVIPVVEKPKQQPPRFLRRIRSLEW 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240086|ref|NP_199221.1| basic leucine zipper transcription factor [Arabidopsis thaliana] gi|9758567|dbj|BAB09068.1| unnamed protein product [Arabidopsis thaliana] gi|18175622|gb|AAL59898.1| unknown protein [Arabidopsis thaliana] gi|20465651|gb|AAM20294.1| unknown protein [Arabidopsis thaliana] gi|28317385|tpe|CAD29862.1| TPA: basic leucine zipper transcription factor [Arabidopsis thaliana] gi|332007673|gb|AED95056.1| basic leucine zipper transcription factor [Arabidopsis thaliana]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/269 (55%), Positives = 187/269 (69%), Gaps = 36/269 (13%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD-----------TNSNLIANENDQNGAVS 49
           MTV+GIL + + +   + T+++LLDA I L+D           T S+++   +   G  +
Sbjct: 59  MTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITTTTASDVV---DHGGGTET 115

Query: 50  AGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVED----SAGGDDMDVKA 105
               KSVD++WRE+VSGE K MKEE  +E+MTLEDFLAKA AVED    +A  +D+DVK 
Sbjct: 116 TRGGKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKA-AVEDETAVTASAEDLDVKI 174

Query: 106 FANVTERLSGGVYAFDQPAAA-SPFQ----VEGAIVGFGNGVEVVGG--RGKRGRVMLEP 158
              VT       Y FD  A   +PFQ    VEG+IV FGNG++V GG  RGKR RVM+EP
Sbjct: 175 --PVTN------YGFDHSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGARGKRARVMVEP 226

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYK 218
           LDKAA QRQRRMIKNRESAARSRERKQAYQVELE+LA +LEEENE L KE  ++ KERY+
Sbjct: 227 LDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQ 286

Query: 219 QLMEKVVPVVE--KKRPPRVLRRVQSAEW 245
           +LME V+PVVE  K++PPR LRR++S EW
Sbjct: 287 KLMEFVIPVVEKPKQQPPRFLRRIRSLEW 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081185|emb|CBI18211.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 147/168 (87%), Gaps = 5/168 (2%)

Query: 80  MTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQ--PAAASPFQVEGAIVG 137
           MTLEDFLAKAGAVE+   G+D DVK    VT+RLSGG++AFD   P+  +P QVEG+++G
Sbjct: 1   MTLEDFLAKAGAVEEE--GEDRDVKV-PLVTQRLSGGIFAFDPVPPSPITPAQVEGSVIG 57

Query: 138 FGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVR 197
           FGNG+E+VGGRGKR   +LEPLDKAAQQ+QRRMIKNRESAARSRERKQAYQVELES AVR
Sbjct: 58  FGNGMEIVGGRGKRRAPVLEPLDKAAQQKQRRMIKNRESAARSRERKQAYQVELESSAVR 117

Query: 198 LEEENEQLLKEKAERTKERYKQLMEKVVPVVEKKRPPRVLRRVQSAEW 245
           LEEENEQLLKEKAER+KER KQLMEK++PVVE+++P RVLRRV+S EW
Sbjct: 118 LEEENEQLLKEKAERSKERLKQLMEKIIPVVERRKPARVLRRVRSMEW 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791457|ref|XP_002863613.1| hypothetical protein ARALYDRAFT_494588 [Arabidopsis lyrata subsp. lyrata] gi|297309448|gb|EFH39872.1| hypothetical protein ARALYDRAFT_494588 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 144/267 (53%), Positives = 183/267 (68%), Gaps = 32/267 (11%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD----------TNSNLIANENDQNGAVSA 50
           MTV+GIL + + +   + T+++LLDA ITL+D          T S+++  ++D  G  + 
Sbjct: 51  MTVEGILHDTFASDPPAPTESSLLDASITLMDASPAPMEITTTVSDVV--DHDGGGTETT 108

Query: 51  GAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVT 110
              KSVD+VWRE+VSG  K MKEE  +E+MTLEDFLAKA   +++A  +D+DVK      
Sbjct: 109 RGGKSVDEVWREMVSGVGKGMKEETQEEIMTLEDFLAKAAVEDETATAEDLDVKIPPTTN 168

Query: 111 ERLSGGVYAFDQPAAA-SPFQ----VEGAIVGFGNGVEVVGGRG------KRGRVMLEPL 159
                  Y FD  A   +PFQ    VEG+IV FGNG++V GG G      KR RVM+EPL
Sbjct: 169 -------YGFDYSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGGSGGVRGKRARVMVEPL 221

Query: 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQ 219
           DKAA QRQRRMIKNRESAARSRERKQAYQVELE+LA +LEEENE L KE  E+ KERY++
Sbjct: 222 DKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEEKRKERYQK 281

Query: 220 LMEKVVPVVE--KKRPPRVLRRVQSAE 244
           LME V+PVVE  K++PPR LRR++S E
Sbjct: 282 LMEFVIPVVEKPKQQPPRFLRRIRSLE 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|207999344|emb|CAQ53097.1| basic-leucine zipper [Humulus lupulus]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/263 (63%), Positives = 197/263 (74%), Gaps = 25/263 (9%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNS-----NLIANENDQN-GAV-SAGAM 53
           MTVDG LRNVY+ T A+  ++TLLDAQITL+D               D N G++ S+ A 
Sbjct: 59  MTVDGFLRNVYDATPAA--ESTLLDAQITLIDPTPIASVSAAAVATGDLNSGSIGSSSAP 116

Query: 54  KSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFL-AKAGAVEDSAGGDDMDVKAF-ANVTE 111
           K+VD+VWREI+SG++KE KEE  D +MTLEDFL AK G     A  ++ DVK+  A +TE
Sbjct: 117 KTVDEVWREIISGDRKECKEEEQDMVMTLEDFLLAKTGI----ASVEEEDVKSLPAPLTE 172

Query: 112 RLSGGVYAFDQPAAASPFQ----VEGAIVGFGNGVEVVGGRGKRGRVM-----LEPLDKA 162
            LS G+++FD     SP Q    VEG+I+GFGNGVEV+GG G  GR       LEPLDKA
Sbjct: 173 SLSSGLFSFDS-IPPSPLQALDNVEGSIIGFGNGVEVIGGGGAGGRGKRGRNVLEPLDKA 231

Query: 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222
           AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEEN++LLKEKAERTKER+KQLME
Sbjct: 232 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENDRLLKEKAERTKERFKQLME 291

Query: 223 KVVPVVEKKRPPRVLRRVQSAEW 245
           KV+PV EK+RPPRVLRRV+S +W
Sbjct: 292 KVIPVEEKRRPPRVLRRVRSLQW 314

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283399|dbj|BAJ34565.1| unnamed protein product [Thellungiella halophila]

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 149/270 (55%), Positives = 180/270 (66%), Gaps = 32/270 (11%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNS-----NLIANENDQNGAVSAGAMKS 55
           MTV+GIL + +  +    TD++LL+A ITL+DT S       +++ +   G  +    KS
Sbjct: 61  MTVEGILHDAF-ASDPPATDSSLLEASITLMDTPSAPMEITTVSDLDRGGGGGTETRGKS 119

Query: 56  VDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGA-----VEDSAGG--DDMDVKAFAN 108
           VD+VWR+IVSGE K MKEE  +E+MTLEDFLAKA       V  + GG  DDMDVK    
Sbjct: 120 VDEVWRDIVSGEGKGMKEETQEEIMTLEDFLAKAAGGDSATVVGNGGGESDDMDVKI--- 176

Query: 109 VTERLSGGVYAFDQPAAA-SPFQ----VEGAIVGFGNGVEVVGGRGKRGR-------VML 156
             ERL    Y FD  A   +PFQ    VEG+IV FGNG++V GG    G        VM+
Sbjct: 177 PPERLD---YGFDHSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGRGGGGARGKRARVMV 233

Query: 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKER 216
           EPLDKAA QRQRRMIKNRESAARSRERKQAYQVELESLA +LEEENE L KE  E+ KER
Sbjct: 234 EPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELESLAAKLEEENETLSKEIEEKRKER 293

Query: 217 YKQLMEKVVPVVEK-KRPPRVLRRVQSAEW 245
           YK+LME V+PV EK ++ PR LRR++S EW
Sbjct: 294 YKKLMEFVIPVAEKPQQQPRFLRRIRSLEW 323

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2172507	315	AT5G44080 [Arabidopsis thalian	0.865	0.673	0.437	9.5e-34
TAIR|locus:2024224	270	GBF4 "G-box binding factor 4"	0.669	0.607	0.516	2.9e-32
TAIR|locus:2049425	442	ABI5 "ABA INSENSITIVE 5" [Arab	0.146	0.081	0.75	1.3e-12
UNIPROTKB|Q8RZ35	388	P0489B03.11 "Putative ABA resp	0.138	0.087	0.764	2.2e-12
TAIR|locus:2103665	297	AREB3 "ABA-responsive element	0.146	0.121	0.694	6.1e-12
TAIR|locus:2118969	454	ABF3 "AT4G34000" [Arabidopsis	0.142	0.077	0.714	5.7e-11
UNIPROTKB|Q6ZDF3	318	TRAB1 "bZIP transcription fact	0.142	0.110	0.714	5.9e-11
TAIR|locus:2063275	262	EEL "AT2G41070" [Arabidopsis t	0.146	0.137	0.694	9.4e-10
TAIR|locus:2076018	331	DPBF2 "AT3G44460" [Arabidopsis	0.142	0.105	0.714	2.5e-09

TAIR|locus:2172507 AT5G44080 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 105/240 (43%), Positives = 130/240 (54%)

Query:     1 MTVDGILRNVYNXXXXXXXXXXXXXXQITLVDTN------SNLIANEN-DQNGAV-SAGA 52
             MTV+GIL + +                I L+D +      +   A++  D  G   +   
Sbjct:    59 MTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITTTTASDVVDHGGGTETTRG 118

Query:    53 MKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVED----SAGGDDMDVKAFAN 108
              KSVD++WRE+VSGE K MKEE  +E+MTLEDFLAKA AVED    +A  +D+DVK    
Sbjct:   119 GKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKA-AVEDETAVTASAEDLDVKI--P 175

Query:   109 VTERLSGGVYAFDQPAAA-SPFQ----VEGAIXXXXXXXXXXXXXXXXXXX--MLEPLDK 161
             VT       Y FD  A   +PFQ    VEG+I                     M+EPLDK
Sbjct:   176 VTN------YGFDHSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGARGKRARVMVEPLDK 229

Query:   162 AAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRXXXXXXXXXXXXXXRTKERYKQLM 221
             AA QRQRRMIKNRESAARSRERKQAYQVELE+LA +              + KERY++LM
Sbjct:   230 AAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQKLM 289

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2024224 GBF4 "G-box binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 95/184 (51%), Positives = 114/184 (61%)

Query:    43 DQNGAVSAGAMKSVDDVWREIVSGEKKE--MKEEAIDEMMTLEDFLAKAGAVEDSAGGDD 100
             D+N +V+ G  KSVDDVW+EIVSGE+K   MKEE  +++MTLEDFLAKA    D    D+
Sbjct:    77 DRN-SVNNG--KSVDDVWKEIVSGEQKTIMMKEEEPEDIMTLEDFLAKAEM--DEGASDE 131

Query:   101 MDVKAFANVTERLSG-GVYAFDQPAAA-SPFQ-VEGAIXXXXXXXXXXXXXXXXXXXMLE 157
             +DVK     TERL+  G Y FD P    S FQ VEG++                   M+E
Sbjct:   132 IDVKI---PTERLNNDGSYTFDFPMQRHSSFQMVEGSMGGGVTRGKRGRV-------MME 181

Query:   158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRXXXXXXXXXXXXXXRTKERY 217
              +DKAA QRQ+RMIKNRESAARSRERKQAYQVELE+LA +               TKERY
Sbjct:   182 AMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERY 241

Query:   218 KQLM 221
             K+LM
Sbjct:   242 KKLM 245

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2049425 ABI5 "ABA INSENSITIVE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query:   158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             P++K  ++RQRRMIKNRESAARSR RKQAY VELE+
Sbjct:   350 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEA 385

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048316 "seed development" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IEP;RCA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB|Q8RZ35 P0489B03.11 "Putative ABA response element binding factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 129 (50.5 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query:   160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             +K  ++RQRRMIKNRESAARSR RKQAY VELE+
Sbjct:   299 EKTVERRQRRMIKNRESAARSRARKQAYTVELEA 332

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2103665 AREB3 "ABA-responsive element binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query:   157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELE 192
             E ++K  ++RQ+RMIKNRESAARSR RKQAY  ELE
Sbjct:   219 EVVEKTVERRQKRMIKNRESAARSRARKQAYTHELE 254

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2118969 ABF3 "AT4G34000" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
 Identities = 25/35 (71%), Positives = 31/35 (88%)

Query:   159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             L+K  ++RQ+RMIKNRESAARSR RKQAY +ELE+
Sbjct:   368 LEKVIERRQKRMIKNRESAARSRARKQAYTMELEA 402

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

UNIPROTKB|Q6ZDF3 TRAB1 "bZIP transcription factor TRAB1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 127 (49.8 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
 Identities = 25/35 (71%), Positives = 31/35 (88%)

Query:   159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             ++K  ++RQRRMIKNRESAARSR RKQAY +ELE+
Sbjct:   226 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEA 260

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2063275 EEL "AT2G41070" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query:   157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELE 192
             E ++K  ++RQ+RMIKNRESAARSR RKQAY  ELE
Sbjct:   184 EIVEKTVERRQKRMIKNRESAARSRARKQAYTHELE 219

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2076018 DPBF2 "AT3G44460" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
 Identities = 25/35 (71%), Positives = 29/35 (82%)

Query:   158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELE 192
             P +   ++RQRRMIKNRESAARSR R+QAY VELE
Sbjct:   242 PPEILMERRQRRMIKNRESAARSRARRQAYTVELE 276

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0033613 "activating transcription factor binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
smart00338	65	smart00338, BRLZ, basic region leucin zipper	1e-11
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-10
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	4e-07

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKER 216
           ++R+RR  +NRE+A RSRERK+A   ELE    +LE ENE+L KE     +E 
Sbjct: 4   EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRREL 56

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 33/59 (55%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEK 223
           +R+RR  KNRE+A RSR RK+AY  ELE     LE EN+ L  E     KE  K   E 
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215
            + R RR  +N E+A RSRE+K+  + ELE     LEEEN QL ++  +  KE
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
smart00338	65	BRLZ basic region leucin zipper.	99.3
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.23
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.22
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.12
KOG3584	348	consensus cAMP response element binding protein an	99.08
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	98.86
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.84
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	97.91
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.32
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.31
KOG4571	294	consensus Activating transcription factor 4 [Trans	96.99
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	95.95
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	95.77
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	89.72
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	87.64
PRK00888	105	ftsB cell division protein FtsB; Reviewed	82.97
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.73
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	81.58
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	80.3

>smart00338 BRLZ basic region leucin zipper

Probab=99.30  E-value=1.9e-11  Score=88.80  Aligned_cols=57  Identities=46%  Similarity=0.559  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQL  220 (245)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l  220 (245)
                      ++++.+|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|.. +...|
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~-e~~~l   59 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRR-ELEKL   59 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            5688999999999999999999999999999999999999999999999886 34433

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.23  E-value=2.9e-11  Score=119.05  Aligned_cols=58  Identities=47%  Similarity=0.564  Sum_probs=55.5

Q ss_pred             cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE  215 (245)
Q Consensus       158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~  215 (245)
                      .+|.++-||+.|||||||||+.||+|||+|+..||.++..|..||+.|++++..|+++
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q  331 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQ  331 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999874

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.22  E-value=8.2e-11  Score=85.38  Aligned_cols=57  Identities=46%  Similarity=0.592  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQL  220 (245)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l  220 (245)
                      ..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|.. ++..|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~-~~~~L   59 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKK-EIQSL   59 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            5678999999999999999999999999999999999999999999998886 34444

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.12  E-value=3.6e-10  Score=79.95  Aligned_cols=51  Identities=49%  Similarity=0.634  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      ++++.+|. +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|.+
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56677787 9999999999999999999999999999999999999998875

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.08  E-value=2e-10  Score=106.55  Aligned_cols=58  Identities=31%  Similarity=0.481  Sum_probs=53.6

Q ss_pred             ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      ...|+...||+-|+.||||.|+.||+|||+|+.+||.+|.-||..|..|-.++..|+.
T Consensus       283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe  340 (348)
T KOG3584|consen  283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE  340 (348)
T ss_pred             ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence            3467788999999999999999999999999999999999999999999999888764

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=98.86  E-value=1.3e-08  Score=92.51  Aligned_cols=67  Identities=37%  Similarity=0.392  Sum_probs=60.1

Q ss_pred             CCCCCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          148 RGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE  215 (245)
Q Consensus       148 ~~~r~r~~~~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~  215 (245)
                      .++|||-..+++.- +||-+||+.|||+.|+-+|.|||+++.++|.++..|.+||+.|+.++..|+.+
T Consensus        53 ~~~rKr~RL~HLS~-EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~  119 (292)
T KOG4005|consen   53 QPKRKRRRLDHLSW-EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI  119 (292)
T ss_pred             chHHHHHhhcccCH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56787777777765 88999999999999999999999999999999999999999999998888754

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.84  E-value=3.6e-09  Score=102.94  Aligned_cols=59  Identities=32%  Similarity=0.398  Sum_probs=54.3

Q ss_pred             ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE  215 (245)
Q Consensus       157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~  215 (245)
                      ...++.+.||-||+|+|.+||+.||+|||+|++.||.+|....+||.+|++++++|+..
T Consensus       243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~  301 (472)
T KOG0709|consen  243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELS  301 (472)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhc
Confidence            34677888999999999999999999999999999999999999999999999998753

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=97.91  E-value=7.6e-07  Score=69.20  Aligned_cols=57  Identities=35%  Similarity=0.347  Sum_probs=48.0

Q ss_pred             cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      ..+....|..||..|||.+|+.||.||..++.+||.++..|+.+...|..++..+.+
T Consensus        23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~   79 (92)
T PF03131_consen   23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQ   79 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667799999999999999999999999999999998888777777776665553

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.32  E-value=0.0012  Score=61.17  Aligned_cols=57  Identities=30%  Similarity=0.404  Sum_probs=45.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 025985          168 RRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK---ERYKQLMEKV  224 (245)
Q Consensus       168 rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~---~~~~~l~~~~  224 (245)
                      |...+||+.|.+||+||-.++..||.+|..|.-+|..|-..+..|++   ++.+.+++.+
T Consensus       209 Rkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi  268 (279)
T KOG0837|consen  209 RKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHI  268 (279)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33468999999999999999999999999999999998888777663   2334444444

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.31  E-value=0.00093  Score=61.28  Aligned_cols=63  Identities=25%  Similarity=0.398  Sum_probs=53.3

Q ss_pred             CCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          153 RVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE  215 (245)
Q Consensus       153 r~~~~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~  215 (245)
                      +....+.+++..+=..|..+|=++|++||.+.|.-..+...+|..|+.||+.|+.++++|+++
T Consensus       182 ~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e  244 (269)
T KOG3119|consen  182 SKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE  244 (269)
T ss_pred             ccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455666666666666779999999999999999999999999999999999999999873

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=96.99  E-value=0.0037  Score=58.52  Aligned_cols=62  Identities=32%  Similarity=0.412  Sum_probs=49.5

Q ss_pred             HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Q 025985          163 AQQRQRRM-IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE--RYKQLMEKV  224 (245)
Q Consensus       163 ~~rr~rR~-ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~--~~~~l~~~~  224 (245)
                      .+++.+|+ +.|..+|.|=|.||++-.+.|+-+...|+.+|++|+.+.++|.++  .+++||..+
T Consensus       224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~  288 (294)
T KOG4571|consen  224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV  288 (294)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444 456667999999999999999999999999999999999999753  456666654

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=95.95  E-value=0.011  Score=60.02  Aligned_cols=48  Identities=38%  Similarity=0.474  Sum_probs=41.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAER  212 (245)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l  212 (245)
                      |-.||.=|||.+|++||+||=..|..||..|..|..|-++|+++..++
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~  537 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDEL  537 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345777899999999999999999999999999998888877765544

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=95.77  E-value=0.11  Score=43.99  Aligned_cols=54  Identities=26%  Similarity=0.357  Sum_probs=38.8

Q ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERT  213 (245)
Q Consensus       160 d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~  213 (245)
                      +....|.+||-.|||==|+-||-|.=..-.+||.+-..|..+.+.|+.+++.+.
T Consensus        48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~  101 (135)
T KOG4196|consen   48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR  101 (135)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445577788889999999999999998888888655555544444444444443

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=89.72  E-value=0.021  Score=54.92  Aligned_cols=66  Identities=20%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             cccHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985          158 PLDKAAQQRQRRMIKNRESAAR---SRERKQAYQVELESLAVRLE-EENEQLLKEKAERTKERYKQLMEKV  224 (245)
Q Consensus       158 ~~d~~~~rr~rR~ikNReSA~r---SR~RKkay~~eLE~~v~~Le-~EN~~L~~~~~~l~~~~~~~l~~~~  224 (245)
                      ...+.+.++..|+.+|+..|+.   ||.+++.++.+|+.+|+.|+ .+|..|..++..|.. +++.++..+
T Consensus       147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn-e~~~l~~~l  216 (395)
T KOG1414|consen  147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN-EADHLEKEL  216 (395)
T ss_pred             CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc-HHHHHHHHH
Confidence            3446688999999999999999   99999999999999999999 999999988887764 444444444

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=87.64  E-value=9.5  Score=30.22  Aligned_cols=65  Identities=26%  Similarity=0.378  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 025985          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVE  229 (245)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~~~~~~  229 (245)
                      .+.+..|-++.-+.+.+.+..|.+-+..|..++..|..+...|...+..+.  .|...|+.++|..|
T Consensus        58 n~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~--~Y~~fL~~v~~~~~  122 (126)
T PF13863_consen   58 NEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK--KYEEFLEKVVPKSP  122 (126)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccc
Confidence            344455555666667777788888889999999999999999999999886  58889999886543

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=82.97  E-value=6.4  Score=31.54  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          181 RERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       181 R~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      ....++.+.+++.++..|+.+|..|+.++..|+.
T Consensus        29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3556677889999999999999999999999875

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.73  E-value=12  Score=27.02  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHH
Q 025985          182 ERKQAYQVELESLAVRLEEENEQLLKEKAER-T-KERYKQLME  222 (245)
Q Consensus       182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l-~-~~~~~~l~~  222 (245)
                      ...+..+.+|+.++..|+.+|..|+.++..| . .....++..
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR   62 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR   62 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4456678899999999999999999999998 3 333344444

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=81.58  E-value=2.6  Score=31.17  Aligned_cols=25  Identities=32%  Similarity=0.263  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          189 VELESLAVRLEEENEQLLKEKAERT  213 (245)
Q Consensus       189 ~eLE~~v~~Le~EN~~L~~~~~~l~  213 (245)
                      +-|..++..|++.|.+|..++.-|+
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk   41 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLK   41 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555544333

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=80.30  E-value=3.1  Score=34.59  Aligned_cols=27  Identities=30%  Similarity=0.251  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          184 KQAYQVELESLAVRLEEENEQLLKEKA  210 (245)
Q Consensus       184 Kkay~~eLE~~v~~Le~EN~~L~~~~~  210 (245)
                      |..-+++|+.++.+|+-||..|++++.
T Consensus         1 k~~t~EeLaaeL~kLqmENk~LKkkl~   27 (118)
T PF05812_consen    1 KDMTMEELAAELQKLQMENKALKKKLR   27 (118)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445689999999999999999999875

; PDB: 2OA5_B 2H3R_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	5e-13
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	9e-10
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	9e-09
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	9e-09
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	4e-08
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	2e-07
2wt7_B	90	Transcription factor MAFB; transcription, transcri	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	7e-06
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	7e-05
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	2e-04
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	4e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 60.9 bits (148), Expect = 5e-13
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQ 219
           +R+ R++KNRE+A  SR +K+ Y   LE+    LE +N+  L E+ +  K+ Y  
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKT-LIEELKALKDLYSH 54

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 52.3 bits (126), Expect = 9e-10
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215
           +R++ + +NR +A+RSR++++ +   LE  A  L   N QL  E      E
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 49.7 bits (119), Expect = 9e-09
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERY--KQLME 222
           ++ ++M +N+ +A R R++K+A Q  L      LE++NE L +      KE    K L+E
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61

Query: 223 KV 224
           +V
Sbjct: 62  EV 63

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 49.7 bits (119), Expect = 9e-09
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224
           + +R+ ++NR +A++SR+RK      LE     L+ +N +L        ++   QL +KV
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ-VAQLKQKV 59

Query: 225 V 225
           +
Sbjct: 60  M 60

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYK 218
           ++R+ R  +N+ +AA+ R R++     L++   +LE+E   L  E A   KE+ K
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 31/67 (46%)

Query: 150 KRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209
            +    L   +    +++RR +KNR  AA  R ++   + ELE     L++E E+L  E 
Sbjct: 22  NQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASEN 81

Query: 210 AERTKER 216
           A    E 
Sbjct: 82  ASMKLEL 88

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 45.0 bits (106), Expect = 8e-07
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 156 LEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215
               +    +++RR +KNR  A   R ++   +  LE+   +L ++ EQL +E +   +E
Sbjct: 18  FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARE 77

Query: 216 R 216
           R
Sbjct: 78  R 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 76/244 (31%)

Query: 6   ILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVS 65
           +L NV N       +A  L  +I L+ T    + +       +SA            I  
Sbjct: 249 VLLNVQNAKAW---NAFNLSCKI-LLTTRFKQVTD------FLSAATTT-------HISL 291

Query: 66  GEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAA 125
                      DE+ +L                                      D P  
Sbjct: 292 DHHSMTLTP--DEVKSL-----------------------LLKYL-----DCRPQDLPRE 321

Query: 126 A---SPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRE 182
               +P ++  +I+      E +    + G    +        +   +I++  +     E
Sbjct: 322 VLTTNPRRL--SIIA-----ESI----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 183 RKQAYQVELESLAVRLEEEN--EQLLK----EKAERTKERYKQLMEKVVP--VVEKKRPP 234
            ++ +    + L+V     +    LL     +  +        ++ K+    +VEK+   
Sbjct: 371 YRKMF----DRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYSLVEKQPKE 423

Query: 235 RVLR 238
             + 
Sbjct: 424 STIS 427

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 14/59 (23%), Positives = 33/59 (55%)

Query: 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215
           + +DK + + + R  +N  +  +SR++ +   +E +   + L  ENE+L K+  + ++E
Sbjct: 7   KTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 14/58 (24%), Positives = 32/58 (55%)

Query: 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215
            +DK + + + R  +N  +  +SR++ +   +E +   + L  ENE+L K+  + ++E
Sbjct: 8   TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 154 VMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKA 210
           ++ E  D AA +R R    N E+A RSR RK     +LE     L  +N  L  E A
Sbjct: 2   IVPESSDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 54

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQ 219
           +   +   +R  +NR +    R+RK+ +   LE+  V L+E +     E  ++ +++ +Q
Sbjct: 3   NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLEN-DQLRQKVRQ 61

Query: 220 LME 222
           L E
Sbjct: 62  LEE 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.59
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.39
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.32
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.23
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.15
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.91
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.71
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.67
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.39
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.32
2wt7_B	90	Transcription factor MAFB; transcription, transcri	97.84
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	96.61
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	95.68
3m48_A	33	General control protein GCN4; leucine zipper, synt	91.67
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	91.21
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	91.13
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	89.91
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	88.51
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	88.1
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	87.41
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	87.05
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	86.11
1uo4_A	34	General control protein GCN4; four helix bundle, c	85.96
2bni_A	34	General control protein GCN4; four helix bundle, a	85.86
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	85.19
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	84.81
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	84.55
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	84.53
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	84.29
2hy6_A	34	General control protein GCN4; protein design, para	83.7
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	82.7

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.59  E-value=1.9e-15  Score=107.36  Aligned_cols=50  Identities=36%  Similarity=0.542  Sum_probs=47.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      |+++||++||+||++||.|||+|+++||.+|..|+.||..|+.++..|.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998764

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.39  E-value=1.5e-12  Score=94.14  Aligned_cols=58  Identities=28%  Similarity=0.339  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME  222 (245)
Q Consensus       164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~  222 (245)
                      +||++|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|.. ++.+|..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~-e~~~Lk~   58 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK-EKEKLEF   58 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            479999999999999999999999999999999999999999999998875 4444443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.32  E-value=7.5e-12  Score=89.71  Aligned_cols=59  Identities=29%  Similarity=0.363  Sum_probs=52.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV  224 (245)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~  224 (245)
                      ||++|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|.. +..+|-..+
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~-e~~~Lk~~l   59 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN-EVAQLKQLL   59 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            58899999999999999999999999999999999999999999999886 455554443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.23  E-value=2.1e-11  Score=88.63  Aligned_cols=44  Identities=36%  Similarity=0.336  Sum_probs=41.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          171 IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       171 ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+||+||+|||.||++|+.+||.+|..|+.+|..|..++..|++
T Consensus        15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~   58 (63)
T 2dgc_A           15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34999999999999999999999999999999999999998875

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.15  E-value=1e-10  Score=84.05  Aligned_cols=50  Identities=26%  Similarity=0.357  Sum_probs=46.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          166 RQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE  215 (245)
Q Consensus       166 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~  215 (245)
                      +.+|..+||++|++||.||++|+.+||.+|..|+.+|..|..++..|..+
T Consensus         2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e   51 (62)
T 1jnm_A            2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ   51 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999999999988763

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.91  E-value=4.3e-09  Score=76.19  Aligned_cols=50  Identities=30%  Similarity=0.409  Sum_probs=43.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      |+.+++.+||.+|+|||.||++++.+|+.++..|+.+|..|+.++..|..
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~   51 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK   51 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999999999999999999999999999999999999999986

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.71  E-value=5e-08  Score=73.76  Aligned_cols=63  Identities=22%  Similarity=0.340  Sum_probs=52.2

Q ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME  222 (245)
Q Consensus       159 ~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~  222 (245)
                      +|+.++.-..|..+|.++|++||.+++....+++.++..|+.||..|+.++..|.+ ++..|-.
T Consensus         9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~-E~~~Lr~   71 (78)
T 1gu4_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-ELSTLRN   71 (78)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred             cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            34555555666788999999999999999999999999999999999999998876 4444443

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.67  E-value=9.9e-08  Score=73.48  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=54.1

Q ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985          159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV  224 (245)
Q Consensus       159 ~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~  224 (245)
                      +|+.+++-..|..+|.++|++||.+++....+++.++..|+.||..|+.+++.|.+ +...|-..+
T Consensus         9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~-E~~~Lr~ll   73 (87)
T 1hjb_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-ELSTLRNLF   73 (87)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            35555666677788999999999999999999999999999999999999999886 455554444

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.39  E-value=1.3e-06  Score=64.81  Aligned_cols=48  Identities=25%  Similarity=0.284  Sum_probs=42.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          167 QRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       167 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+|+..||.|++..|.||++|+.+||.+|..|+.+|..|..++..|+.
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~   57 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ   57 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999999999999999999888777777766654

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.32  E-value=8.5e-08  Score=76.45  Aligned_cols=58  Identities=29%  Similarity=0.345  Sum_probs=47.0

Q ss_pred             ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      ...+....|.+||..|||.+|+.||.||.+.+.+||.++..|..+.+.|..++..+.+
T Consensus        29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~   86 (107)
T 3a5t_A           29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL   86 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred             CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999997776666666666665555543

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=97.84  E-value=0.0001  Score=57.07  Aligned_cols=57  Identities=25%  Similarity=0.282  Sum_probs=49.7

Q ss_pred             cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      ..+....|..||-.|||..|+-||.||-....+||.++..|..+-+.|+.++..+.+
T Consensus        20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~   76 (90)
T 2wt7_B           20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR   76 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667889999999999999999999999999999988888888888888877764

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=96.61  E-value=0.0041  Score=41.95  Aligned_cols=39  Identities=28%  Similarity=0.429  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025985          185 QAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVV  225 (245)
Q Consensus       185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~~  225 (245)
                      |+|+.+||.++..|+..|.+|..++..|..+  ++.+.+++
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~E--N~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNE--NQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHh
Confidence            6899999999999999999999999999753  44455443

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=95.68  E-value=0.0056  Score=47.50  Aligned_cols=37  Identities=19%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 025985          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELES  193 (245)
Q Consensus       157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~  193 (245)
                      ........+..||..|||..|++||+||-+.+.+|+.
T Consensus        54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            4455678899999999999999999999999888764

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=91.67  E-value=0.21  Score=32.08  Aligned_cols=27  Identities=30%  Similarity=0.207  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          188 QVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      +..||.+|+.|-.+|..|..++..|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            578999999999999999999997764

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=91.21  E-value=1.2  Score=31.71  Aligned_cols=40  Identities=25%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          171 IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKA  210 (245)
Q Consensus       171 ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~  210 (245)
                      -+||..+++||+|=+..++-.-.-...-.+||++|+--+.
T Consensus         7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~k   46 (63)
T 2c9l_Y            7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLK   46 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            4799999999999888777766655666788888876543

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=91.13  E-value=0.3  Score=31.50  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          187 YQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4789999999999999999999987664

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=89.91  E-value=0.43  Score=31.10  Aligned_cols=28  Identities=18%  Similarity=0.072  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          187 YQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4789999999999999999999997764

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=88.51  E-value=0.64  Score=29.93  Aligned_cols=28  Identities=14%  Similarity=-0.029  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          187 YQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .++.||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4789999999999999999999987664

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=88.10  E-value=0.47  Score=30.91  Aligned_cols=28  Identities=29%  Similarity=0.155  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          187 YQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+..||.+|+.|..+|..|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~   29 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEK   29 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678999999999999999999987764

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=87.41  E-value=4  Score=31.08  Aligned_cols=66  Identities=15%  Similarity=0.088  Sum_probs=34.0

Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          149 GKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQ--AYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       149 ~~r~r~~~~~~d~~~~rr~rR~ikNReSA~rSR~RKk--ay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      +|..|...+..-+.+.-..-+-++.++-.+..-.||+  ..+..-..++..|+++..++++.+.+|+.
T Consensus        12 ggsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           12 AGAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444444444444444444454555555555556665  34444455667777777777777776654

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=87.05  E-value=1.2  Score=28.49  Aligned_cols=27  Identities=7%  Similarity=0.013  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          188 QVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      +..||.+|+.|-.+|..|..++..|+.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            678999999999999999999987664

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=86.11  E-value=0.069  Score=41.34  Aligned_cols=30  Identities=30%  Similarity=0.224  Sum_probs=25.5

Q ss_pred             ccccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 025985          157 EPLDKAAQQRQRRMIKNRESAARSRERKQA  186 (245)
Q Consensus       157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKka  186 (245)
                      ........+..||.-|||..|++||+||-.
T Consensus        58 s~~Ql~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           58 TESQLALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            455667889999999999999999999854

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=85.96  E-value=1  Score=29.05  Aligned_cols=28  Identities=14%  Similarity=0.049  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          187 YQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678999999999999999999987664

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=85.86  E-value=1  Score=29.02  Aligned_cols=28  Identities=14%  Similarity=0.121  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          187 YQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            5688999999999999999999987664

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=85.19  E-value=3.4  Score=32.49  Aligned_cols=29  Identities=41%  Similarity=0.308  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          185 QAYQVELESLAVRLEEENEQLLKEKAERT  213 (245)
Q Consensus       185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~  213 (245)
                      -+.+.+|+.+|.+|..||..|+.+.+--.
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46788999999999999999999987433

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=84.81  E-value=1.9  Score=31.93  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          184 KQAYQVELESLAVRLEEENEQLLKEKAERTKE  215 (245)
Q Consensus       184 Kkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~  215 (245)
                      -.+||..|+.+...|..|+..|+.++..|.++
T Consensus        45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~   76 (80)
T 1nlw_A           45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999988763

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=84.55  E-value=1.5  Score=32.34  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          185 QAYQVELESLAVRLEEENEQLLKEKAERT  213 (245)
Q Consensus       185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~  213 (245)
                      -.|+..|+.++..|++||..|+.++.+..
T Consensus        49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~   77 (82)
T 1am9_A           49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            47999999999999999999999887544

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=84.53  E-value=1.7  Score=31.86  Aligned_cols=31  Identities=10%  Similarity=0.139  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          185 QAYQVELESLAVRLEEENEQLLKEKAERTKE  215 (245)
Q Consensus       185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~  215 (245)
                      -.|+..|+.++..|+.+...|+.++..|+++
T Consensus        46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~   76 (83)
T 1nkp_B           46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999998888763

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=84.29  E-value=2  Score=27.49  Aligned_cols=27  Identities=22%  Similarity=0.046  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          188 QVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      +..||.+|+.|-.+|..|..++..|+.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            678999999999999999999987664

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=83.70  E-value=1.5  Score=28.27  Aligned_cols=28  Identities=21%  Similarity=0.134  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          187 YQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      .+..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678999999999999999999987764

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=82.70  E-value=1.3  Score=33.14  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          185 QAYQVELESLAVRLEEENEQLLKE  208 (245)
Q Consensus       185 kay~~eLE~~v~~Le~EN~~L~~~  208 (245)
                      |+.|.+|+.++.+|+.||.-|+.-
T Consensus        21 Ke~I~EL~e~~~qLE~EN~~Lk~~   44 (78)
T 1dip_A           21 KEQIRELVEKNSQLERENTLLKTL   44 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667777777777777766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	0.003

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 181 RERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME--KVVPVVEKKRPP 234
           R+R +      E  A  LE   EQL +   ER KE +  +M+    + V  + RPP
Sbjct: 2   RQRTEELLRCNEQQAAELETCKEQLFQSNMER-KELHNTVMDLRGNIRVFCRIRPP 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	90.19
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	85.34
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	81.75
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	80.74

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.19  E-value=0.079  Score=37.83  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=26.6

Q ss_pred             cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025985          158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVE  190 (245)
Q Consensus       158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~e  190 (245)
                      ..-..-.+-.||.=||+.+|++||+||-...++
T Consensus        41 e~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          41 EYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            334566788899999999999999999876544

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=0.51  Score=31.34  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          186 AYQVELESLAVRLEEENEQLLKEKA  210 (245)
Q Consensus       186 ay~~eLE~~v~~Le~EN~~L~~~~~  210 (245)
                      .|+..|+.++..|++||..|+..+.
T Consensus        33 ~YI~~Lq~~~~~L~~e~~~L~~~~~   57 (61)
T d1uklc_          33 DYIKYLQQVNHKLRQENMVLKLANQ   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999988765

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=1.5  Score=30.52  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          185 QAYQVELESLAVRLEEENEQLLKEKAERTK  214 (245)
Q Consensus       185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~  214 (245)
                      -.|+..|+.++..|..+...|+.++..|.+
T Consensus        51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~   80 (88)
T d1nkpa_          51 TAYILSVQAEEQKLISEEDLLRKRREQLKH   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468888888888888888888888877765

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=1.2  Score=30.65  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985          185 QAYQVELESLAVRLEEENEQLLKEKAERT  213 (245)
Q Consensus       185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~  213 (245)
                      -.|+..|+.++..|+.+|..|+..+..++
T Consensus        49 ~~yI~~L~~~~~~L~~e~~~lk~~~~~~~   77 (80)
T d1am9a_          49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            35888888888888888888888877654