Citrus Sinensis ID: 025989

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MAQTLTRAITALSIRSSRLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENTR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHccEEEEEEEEEEEEEcEEcHHHHHHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHEcccccccEEEEEcHHHHHHHcccccEEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
MAQTLTRAITALSIRSSRLSLLSSkrllstntttvtapsplpsllfsrraaaplshavglisplpstrfcqircranrsgnsaysplnsgsnfsdrpptemaplfpgcdyehwlivmdkpggegatkQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERyfgfgceldeetsnkleglpgvlfvlpdsyvdpenkdygaelfvngeivqrsperqrrvepqpqraqdrpryndrtRYVRRRENTR
Flexible Loop (DISEMBL)
MAQTLTRAITALSIRSSRLsllsskrllstntttvtapsplpsLLFSRRAAAPLSHAvglisplpsTRFCQIRCRANrsgnsaysplnsgsnfsdrPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGseeeakkkiynVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGeivqrsperqrrvepqpqraqdrpryndrtryvrrrentr
Low Complexity Region (SEG)
MAQTLTRAITAlsirssrlsllsskrllsTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIvqrsperqrrvepqpqraqDrpryndrtryvrrrentr
Disordered region (IsUnstruct)
*******************************************LLFSRRAAAPLSHAVGLISPLPSTRFCQIRCR***************************PLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEI**************************************
Disordered Region (DISOPRED)
*********TALSIRSSRLSLLSS*****************************************************************************APLFPGCDYEHWLIVMDKP*****TKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEI**************************************
Disordered Region (DISEMBL)
MAQTLTRAITALSIRSSRLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQR********************YNDRTRY********
Disordered Region (DISPRO)
**********ALSIRSSRLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRS*****************PPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQ******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQTLTRAITALSIRSSRLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q38732	230	DAG protein, chloroplasti	N/A	no	0.538	0.573	0.510	1e-34
Q9LKA5	395	Uncharacterized protein A	no	no	0.489	0.303	0.532	2e-31

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 94/139 (67%), Gaps = 7/139 (5%)

Query: 104 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGF 163
           + PGCDY HWLIVM+ P     T++QMID Y+ TLA V+GS EEAKK +Y  S   Y GF
Sbjct: 80  MLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 139

Query: 164 GCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQ 223
            C + EETS K +GLPGVL+VLPDSY+D +NKDYG + +VNGEI+   P +    +P+  
Sbjct: 140 QCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEII---PCQYPTYQPKQS 196

Query: 224 RAQDRPRYNDRTRYVRRRE 242
           R+    +Y  +  YVR+R+
Sbjct: 197 RSS---KYKSKA-YVRQRD 211

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.
Antirrhinum majus (taxid: 4151)

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 89/122 (72%), Gaps = 2/122 (1%)

Query: 92  NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKK 151
           N+S+RPP E   L  GCD+EHWL+V++ P GE  T+ ++ID YIKTLAQ+VGSE+EA+ K
Sbjct: 80  NWSNRPPKETI-LLDGCDFEHWLVVVEPPQGE-PTRDEIIDSYIKTLAQIVGSEDEARMK 137

Query: 152 IYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRS 211
           IY+VS   Y+ FG  + E+ S+KL+ L  V +VLPDSY+D  NKDYG E F++G+ V   
Sbjct: 138 IYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYD 197

Query: 212 PE 213
           P+
Sbjct: 198 PK 199

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
255584289	248	DAG protein, chloroplast precursor, puta	0.971	0.959	0.807	1e-108
118487925	241	unknown [Populus trichocarpa]	0.979	0.995	0.764	1e-102
224102209	241	predicted protein [Populus trichocarpa]	0.975	0.991	0.769	1e-100
225433215	233	PREDICTED: DAG protein, chloroplastic [V	0.934	0.982	0.762	1e-100
449432522	243	PREDICTED: DAG protein, chloroplastic-li	0.971	0.979	0.743	6e-99
297823137	219	hypothetical protein ARALYDRAFT_482286 [	0.730	0.817	0.938	2e-95
15226108	219	protein differentiation and greening-lik	0.730	0.817	0.933	5e-95
388494872	217	unknown [Medicago truncatula]	0.755	0.852	0.870	8e-95
225438029	227	PREDICTED: DAG protein, chloroplastic-li	0.885	0.955	0.725	1e-94
2246378	198	plastid protein [Arabidopsis thaliana]	0.730	0.904	0.933	2e-94

>gi|255584289|ref|XP_002532881.1| DAG protein, chloroplast precursor, putative [Ricinus communis] gi|223527366|gb|EEF29510.1| DAG protein, chloroplast precursor, putative [Ricinus communis]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 213/255 (83%), Gaps = 17/255 (6%)

Query: 1   MAQTLTRAITALSIRSSRLSLLSSKRLLSTNTTTVT----------APSPLPSLLFSRRA 50
           MAQTL R+ T    R    SLL  KRLLST TTT T           P   PSLLF+RR+
Sbjct: 1   MAQTLARSFT----RHLTFSLLLPKRLLSTITTTTTTATTSTTSIICPPLPPSLLFTRRS 56

Query: 51  AAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDY 110
             PLSHAV  I P   TRF  IRCR NR+GNSAYSPLNSGSNFSDRPP EMAPLFPGCDY
Sbjct: 57  LLPLSHAVHSIKP---TRFTSIRCRVNRAGNSAYSPLNSGSNFSDRPPNEMAPLFPGCDY 113

Query: 111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEE 170
           EHWLIVMDKPGGEGATKQQMIDCYI+TLA+VVGSEEEAKKKIYNVSCERYFGFGCE+DEE
Sbjct: 114 EHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEE 173

Query: 171 TSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPR 230
           TSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRA DRPR
Sbjct: 174 TSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRANDRPR 233

Query: 231 YNDRTRYVRRRENTR 245
           YNDRTRYVRRREN R
Sbjct: 234 YNDRTRYVRRRENMR 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487925|gb|ABK95784.1| unknown [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/246 (76%), Positives = 206/246 (83%), Gaps = 6/246 (2%)

Query: 1   MAQTLTRAITALSIRSSRLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGL 60
           M  TL R+   L+ R   L +L  KRLLST   ++T P  LP++L  R++   LSHA+  
Sbjct: 1   MTPTLVRS---LATRHLSLCVLLPKRLLST--FSITHPPSLPTVLPCRQSLPSLSHALQS 55

Query: 61  ISPLPS-TRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDK 119
           I+   + TRF  IRCR NR+GNS YSPLNSGSNFSDRPP EMAPLFPGCDYEHWLIVMDK
Sbjct: 56  INKTTNPTRFTSIRCRVNRAGNSGYSPLNSGSNFSDRPPNEMAPLFPGCDYEHWLIVMDK 115

Query: 120 PGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLP 179
           PGGEGATKQQMIDCYI+TL++VVGSEEEAK KIYNVSCERYFGFGCE+DEETSNKLEGLP
Sbjct: 116 PGGEGATKQQMIDCYIQTLSKVVGSEEEAKNKIYNVSCERYFGFGCEIDEETSNKLEGLP 175

Query: 180 GVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVR 239
           GVLFVLPDSYVDPE KDYGAELFVNGEIVQR PERQ+RVEPQPQRA DRPRYNDRTRYVR
Sbjct: 176 GVLFVLPDSYVDPEYKDYGAELFVNGEIVQRPPERQKRVEPQPQRANDRPRYNDRTRYVR 235

Query: 240 RRENTR 245
           RREN R
Sbjct: 236 RRENMR 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102209|ref|XP_002312591.1| predicted protein [Populus trichocarpa] gi|222852411|gb|EEE89958.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/247 (76%), Positives = 204/247 (82%), Gaps = 8/247 (3%)

Query: 1   MAQTLTRAITALSIRSSRLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGL 60
           M  TL R++T    R   L +L  KRLLST + T   PSP P+LL  +   + LSH +  
Sbjct: 1   MTPTLARSLTT---RHLNLCVLLPKRLLSTISIT-HLPSP-PTLLCGQSLPS-LSHNLQS 54

Query: 61  ISPL--PSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMD 118
           I+    P+ RF  IRCR NR+GNS YSPLNSGSNFSDRPP EMAPLFPGCDYEHWLIVMD
Sbjct: 55  INKTTSPAARFTSIRCRVNRAGNSGYSPLNSGSNFSDRPPNEMAPLFPGCDYEHWLIVMD 114

Query: 119 KPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGL 178
           KPGGEGATKQQMIDCYI+TLA+VVGSEEEAK KIYNVSCERYFGFGCE+DEETSNKLEGL
Sbjct: 115 KPGGEGATKQQMIDCYIETLAKVVGSEEEAKTKIYNVSCERYFGFGCEIDEETSNKLEGL 174

Query: 179 PGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYV 238
           PGVLFVLPDSYVDPE KDYGAELFVNGEIVQR PERQRRVEPQPQRA DRPRYNDRTRYV
Sbjct: 175 PGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRPPERQRRVEPQPQRANDRPRYNDRTRYV 234

Query: 239 RRRENTR 245
           RRREN R
Sbjct: 235 RRRENMR 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433215|ref|XP_002285392.1| PREDICTED: DAG protein, chloroplastic [Vitis vinifera] gi|147779193|emb|CAN67991.1| hypothetical protein VITISV_023920 [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 202/240 (84%), Gaps = 11/240 (4%)

Query: 8   AITALSIRSSRLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISP--LP 65
           A  A +I ++   L+ SKR +S+ +         P LL +RR +   S A+ ++SP    
Sbjct: 3   AAVAPAINTTMSPLVLSKRFVSSTSH--------PRLLLTRRPSVQFSRALRVVSPGSAG 54

Query: 66  STRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 125
           S+RF  +RCR NRSG+S YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA
Sbjct: 55  SSRFTPVRCRVNRSGDS-YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 113

Query: 126 TKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVL 185
           TKQQMIDCYI+TLA+VVGSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVL
Sbjct: 114 TKQQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVL 173

Query: 186 PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENTR 245
           PDSYVDPE KDYGAELFVNGEIVQRSPERQRRVEP PQRAQDRPRYND+TRYVRRREN R
Sbjct: 174 PDSYVDPEYKDYGAELFVNGEIVQRSPERQRRVEPAPQRAQDRPRYNDKTRYVRRRENMR 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432522|ref|XP_004134048.1| PREDICTED: DAG protein, chloroplastic-like [Cucumis sativus] gi|449517983|ref|XP_004166023.1| PREDICTED: DAG protein, chloroplastic-like [Cucumis sativus]

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 183/246 (74%), Positives = 208/246 (84%), Gaps = 8/246 (3%)

Query: 1   MAQTLTRAITALSIRSS--RLSLLSSKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAV 58
           M  +L RA+T+ S+ +S  RLS+L   R L ++++T+T P+   S    RR+   LSHAV
Sbjct: 1   MGLSLLRAMTSASVSTSAARLSIL--PRRLFSSSSTLTHPTSPSSFTLRRRSLPLLSHAV 58

Query: 59  GLISPLPST-RFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVM 117
             I   PST RF  +RC ++R GNS+YSPLNS SNF++RPPTEMAPLFPGCDYEHWLIVM
Sbjct: 59  RSI---PSTSRFDSLRCFSSRPGNSSYSPLNSNSNFNERPPTEMAPLFPGCDYEHWLIVM 115

Query: 118 DKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEG 177
           DKPGGEGATKQQMIDCYI+TLA++VGSEEEAKK+IYNVSCERYFGFGCELDEETSNKLEG
Sbjct: 116 DKPGGEGATKQQMIDCYIQTLAKIVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEG 175

Query: 178 LPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRY 237
           LPGVLFVLPDSYVDPE KDYGAEL VNGEIVQRSPERQRRV+PQPQRA DRP+Y DRTRY
Sbjct: 176 LPGVLFVLPDSYVDPEYKDYGAELLVNGEIVQRSPERQRRVQPQPQRANDRPKYTDRTRY 235

Query: 238 VRRREN 243
           VRRREN
Sbjct: 236 VRRREN 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823137|ref|XP_002879451.1| hypothetical protein ARALYDRAFT_482286 [Arabidopsis lyrata subsp. lyrata] gi|297325290|gb|EFH55710.1| hypothetical protein ARALYDRAFT_482286 [Arabidopsis lyrata subsp. lyrata]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/180 (93%), Positives = 173/180 (96%), Gaps = 1/180 (0%)

Query: 66  STRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 125
           STRF  IRC ANRSG SAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA
Sbjct: 41  STRFFSIRCGANRSG-SAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 99

Query: 126 TKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVL 185
           TKQQMIDCYI+TLA+VVGSEEEAKK+IYNVSCERY GFGCE+DEETS KLEGLPGVLFVL
Sbjct: 100 TKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVL 159

Query: 186 PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENTR 245
           PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRY RRRENTR
Sbjct: 160 PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYSRRRENTR 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226108|ref|NP_180901.1| protein differentiation and greening-like 1 [Arabidopsis thaliana] gi|17933285|gb|AAL48226.1|AF446351_1 At2g33430/F4P9.20 [Arabidopsis thaliana] gi|2459425|gb|AAB80660.1| plastid protein [Arabidopsis thaliana] gi|20453405|gb|AAM19941.1| At2g33430/F4P9.20 [Arabidopsis thaliana] gi|110736869|dbj|BAF00392.1| plastid protein [Arabidopsis thaliana] gi|330253739|gb|AEC08833.1| protein differentiation and greening-like 1 [Arabidopsis thaliana]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 168/180 (93%), Positives = 172/180 (95%), Gaps = 1/180 (0%)

Query: 66  STRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 125
           STRF  IRC ANRSG S YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA
Sbjct: 41  STRFFSIRCGANRSG-STYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 99

Query: 126 TKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVL 185
           TKQQMIDCYI+TLA+VVGSEEEAKK+IYNVSCERY GFGCE+DEETS KLEGLPGVLFVL
Sbjct: 100 TKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVL 159

Query: 186 PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENTR 245
           PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRY RRRENTR
Sbjct: 160 PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYSRRRENTR 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494872|gb|AFK35502.1| unknown [Medicago truncatula]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 162/186 (87%), Positives = 177/186 (95%), Gaps = 1/186 (0%)

Query: 61  ISPLPSTRFCQIRCRANRSGNSAYSPLNSG-SNFSDRPPTEMAPLFPGCDYEHWLIVMDK 119
           ++P  S RF  ++CR NR+GNS YSPLNSG SNFS+RPPT+MAPLFPGCDYEHWLIVMDK
Sbjct: 32  VTPSSSFRFTTVQCRVNRAGNSTYSPLNSGNSNFSERPPTDMAPLFPGCDYEHWLIVMDK 91

Query: 120 PGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLP 179
           PGGEGA+KQQMIDCY++TLA+V+GSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLEGLP
Sbjct: 92  PGGEGASKQQMIDCYVQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLP 151

Query: 180 GVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVR 239
           GVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQ+RVEPQPQR QDRPRYNDRTRYVR
Sbjct: 152 GVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQKRVEPQPQRHQDRPRYNDRTRYVR 211

Query: 240 RRENTR 245
           R+ENTR
Sbjct: 212 RKENTR 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438029|ref|XP_002271431.1| PREDICTED: DAG protein, chloroplastic-like [Vitis vinifera]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/244 (72%), Positives = 195/244 (79%), Gaps = 27/244 (11%)

Query: 12  LSIRSSRLSLLS----------SKRLLSTNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLI 61
           +++RSS  SLL+          SKR LS+   ++  P P+P   +    A PLS      
Sbjct: 1   MALRSSSQSLLTLRSTPPLSSLSKRFLSS---SLQQPRPVPVRFW---PAIPLS------ 48

Query: 62  SPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPG 121
                +R  Q+R R NR+G S YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPG
Sbjct: 49  -----SRLNQVRFRVNRAGKSGYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPG 103

Query: 122 GEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGV 181
           GEGATK QMIDCYI+TLA+VVGSEEEAKKKIYNVSCERYFGFGCE+DEETSNKLE LPGV
Sbjct: 104 GEGATKHQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEDLPGV 163

Query: 182 LFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRR 241
           LFVLPDSYVDPENKDYGAELFVNGEIVQRSPE+QRRVEPQPQ  +DRP+YNDRTRYVRRR
Sbjct: 164 LFVLPDSYVDPENKDYGAELFVNGEIVQRSPEQQRRVEPQPQTGRDRPKYNDRTRYVRRR 223

Query: 242 ENTR 245
           EN R
Sbjct: 224 ENMR 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2246378|emb|CAB06698.1| plastid protein [Arabidopsis thaliana]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/180 (93%), Positives = 172/180 (95%), Gaps = 1/180 (0%)

Query: 66  STRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 125
           STRF  IRC ANRSG S YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA
Sbjct: 20  STRFFSIRCGANRSG-STYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 78

Query: 126 TKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVL 185
           TKQQMIDCYI+TLA+VVGSEEEAKK+IYNVSCERY GFGCE+DEETS KLEGLPGVLFVL
Sbjct: 79  TKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVL 138

Query: 186 PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENTR 245
           PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRY RRRENTR
Sbjct: 139 PDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYSRRRENTR 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.714	0.754	0.780	2.5e-72
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.702	0.751	0.788	1.4e-71
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.575	0.643	0.922	3e-69
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.706	0.709	0.486	9.2e-36
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.497	0.525	0.551	4.7e-32
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.681	0.422	0.458	8.8e-31
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.685	0.449	0.426	1.3e-27
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.444	0.260	0.477	1.9e-22
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.506	0.645	0.437	2.6e-22
TAIR|locus:2156344	723	MORF4 "AT5G44780" [Arabidopsis	0.591	0.200	0.346	1.6e-16

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 139/178 (78%), Positives = 153/178 (85%)

Query:    30 TNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNS 89
             + +  V +PSPLPS L SRR +  + HAVG I  L  TRF  IR R +RSG S YSPL S
Sbjct:    19 STSNAVASPSPLPSHLISRRFSPTIFHAVGYIPAL--TRFTTIRTRMDRSGGS-YSPLKS 75

Query:    90 GSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAK 149
             GSNFSDRPPTEMAPLFPGCDYEHWLIVM+KPGGE A KQQMIDCY++TLA++VGSEEEA+
Sbjct:    76 GSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEAR 135

Query:   150 KKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEI 207
             KKIYNVSCERYFGFGCE+DEETSNKLEGLPGVLFVLPDSYVDPE KDYGAELFVNGE+
Sbjct:   136 KKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEV 193

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 138/175 (78%), Positives = 150/175 (85%)

Query:    33 TTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNSGSN 92
             +T  A +P PS + SRR+    SHAVG IS L   RF  IR R +RSG S YSPL SGSN
Sbjct:    19 STSGATTPSPSYILSRRSTPVFSHAVGFISSL--NRFTTIRTRMDRSGGS-YSPLKSGSN 75

Query:    93 FSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKI 152
             FSDR PTEMAPLFPGCDYEHWLIVMDKPGGE ATKQQMIDCY++TLA+++GSEEEAKKKI
Sbjct:    76 FSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKI 135

Query:   153 YNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEI 207
             YNVSCERYFGFGCE+DEETSNKLEGLPGVLF+LPDSYVD ENKDYGAELFVNGEI
Sbjct:   136 YNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFVNGEI 190

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 131/142 (92%), Positives = 135/142 (95%)

Query:    66 STRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 125
             STRF  IRC ANRSG S YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA
Sbjct:    41 STRFFSIRCGANRSG-STYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGA 99

Query:   126 TKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVL 185
             TKQQMIDCYI+TLA+VVGSEEEAKK+IYNVSCERY GFGCE+DEETS KLEGLPGVLFVL
Sbjct:   100 TKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVL 159

Query:   186 PDSYVDPENKDYGAELFVNGEI 207
             PDSYVDPENKDYGAELFVNGEI
Sbjct:   160 PDSYVDPENKDYGAELFVNGEI 181

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 87/179 (48%), Positives = 113/179 (63%)

Query:    30 TNTTTVTAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNS 89
             T +++ +  S  P+L    R A PL   V   S   S   C I  R   SG S YSPLN 
Sbjct:    17 TLSSSTSYSSSFPTLSSRSRFAMPLIEKVS--SSRTSLGPCYISTRPKTSG-SGYSPLND 73

Query:    90 GS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEA 148
              S N+S+RPP E   L  GCDYEHWLIVM+    +  T+++MI+ Y+KTL  V+G +EEA
Sbjct:    74 PSPNWSNRPPKETI-LLDGCDYEHWLIVMEFTDPK-PTEEEMINSYVKTLTSVLGWQEEA 131

Query:   149 KKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEI 207
             KKKIY+V    Y GFG  + EE S K++ LPGVL+VLPDSY+D  NKDYG +L+V G++
Sbjct:   132 KKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKV 190

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/127 (55%), Positives = 87/127 (68%)

Query:    81 NSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQ 140
             +S YS   S SN  ++  T M    PGCDY HWLIVM+ P     ++ QMID Y+ TLA 
Sbjct:    63 DSDYSSKRSNSN--EQRETIM---LPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLAT 117

Query:   141 VVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAE 200
             V+GS EEAKK +Y  S   Y GF C +DEETS K +GLPGVL+VLPDSY+D +NKDYG +
Sbjct:   118 VLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGD 177

Query:   201 LFVNGEI 207
              ++NGEI
Sbjct:   178 KYINGEI 184

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 83/181 (45%), Positives = 112/181 (61%)

Query:    38 PSPLPSLLFSRRAA--APL--SHAVGLIS---PLPSTRFCQIR----CRANRSGNSAYSP 86
             P+   S LF+R  A  APL  S A  L+S   PL +      R         S  +  S 
Sbjct:    14 PAKSLSFLFTRSFASSAPLAKSPASSLLSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSS 73

Query:    87 LNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSE 145
             LN  + N+S+RPP E   L  GCD+EHWL+V++ P GE  T+ ++ID YIKTLAQ+VGSE
Sbjct:    74 LNDPNPNWSNRPPKETI-LLDGCDFEHWLVVVEPPQGE-PTRDEIIDSYIKTLAQIVGSE 131

Query:   146 EEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNG 205
             +EA+ KIY+VS   Y+ FG  + E+ S+KL+ L  V +VLPDSY+D  NKDYG E F++G
Sbjct:   132 DEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDG 191

Query:   206 E 206
             +
Sbjct:   192 K 192

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 75/176 (42%), Positives = 104/176 (59%)

Query:    36 TAPSPLPSLLFSRRAAAPLSHAVGLISPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSD 95
             T+ SP      S   +APL+ A  L  P   +R   +     RS ++A S    G ++  
Sbjct:    16 TSASPFLRPAASASRSAPLA-AAPLPPPHQVSR-PWLPAAGFRS-SAAASAAARGDDYGR 72

Query:    96 RPPTE-MAP---LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKK 151
             R   E ++P   LF GCDY HWLI M+ P  +  T+++MI+ Y++TLA+VVGS EEAKK+
Sbjct:    73 RDVDEKISPDEILFEGCDYNHWLITMEFPDPK-PTREEMIETYLQTLAKVVGSYEEAKKR 131

Query:   152 IYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEI 207
             +Y  S   Y GF   + EE S K  GLPGV+F+LPDSY+ PE K+YG + + NG I
Sbjct:   132 MYAFSTTTYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVI 187

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 53/111 (47%), Positives = 72/111 (64%)

Query:    99 TEMAPLFPGCDYEHWLIVMDKPGGEGA-TKQQMIDCYIKTLAQVVG-SEEEAKKKIYNVS 156
             TE   LF GCDY HWLI MD    E   + ++M+  Y +T AQ +G S EEAK+++Y  S
Sbjct:    76 TEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACS 135

Query:   157 CERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEI 207
                Y GF   + E+ S K + LPGV+F+LPDSY+DP+NK+YG + + NG I
Sbjct:   136 TTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENGVI 186

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 60/137 (43%), Positives = 86/137 (62%)

Query:    82 SAYSPL--NSGSNFSDRPP-TEM--AP-LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYI 135
             S  SP   NSGS  S+    +E+   P L  GCDY+HWL++M  P G   T+  ++  ++
Sbjct:    20 SPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKPPNGY-PTRNHIVQSFV 78

Query:   136 KTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSY-VDPEN 194
             +TLA  +GSEEEAK+ IY+VS + Y+ FGC + E  + K+  LP V +VLPDS+ VD +N
Sbjct:    79 ETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDN 138

Query:   195 KDYGA----ELFVNGEI 207
             + YG     E FV+GE+
Sbjct:   139 R-YGVFFAGEPFVDGEV 154

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2156344 MORF4 "AT5G44780" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 52/150 (34%), Positives = 80/150 (53%)

Query:    62 SPLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFP---GCDYEHWLIVMD 118
             +P+PS     +  + + + N + + L S + +   P T      P   GCD+ HWLI M+
Sbjct:    32 TPVPSLLPRSV-VKQSTAINRSPARLFSTTQYQYDPYTGEDSFMPDNEGCDFNHWLITMN 90

Query:   119 KPGGEGATKQQMIDCYIKTLAQVVG-SEEEAKKKIYNVSCERYFGFGCELDEETSNKLEG 177
              P     ++++MI  + +T A+ +  S EEAKKKIY +    Y GF   +      K   
Sbjct:    91 FPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQATMTIGEVEKFRD 150

Query:   178 LPGVLFVLPDSYVDPENKDYGAELFVNGEI 207
             LPGV +++PDSY+D ENK YG + + NG I
Sbjct:   151 LPGVQYIIPDSYIDVENKVYGGDKYENGVI 180

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	99.32

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.32  E-value=1.4e-12  Score=95.50  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=54.3

Q ss_pred             eEEEEecCCCCCCCCchhhHHHHHHHHHHhhCCh----hhhhcceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCC
Q 025989          112 HWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSE----EEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPD  187 (245)
Q Consensus       112 tYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~----eeAk~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPD  187 (245)
                      .|||.|+.....    +...+++.+++.+++.+.    ......++|+|+..|+||+|+|+++++++|+++|+|.+|.||
T Consensus         1 ~YIV~~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D   76 (82)
T PF05922_consen    1 RYIVVFKDDASA----ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD   76 (82)
T ss_dssp             EEEEEE-TTSTH----HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred             CEEEEECCCCCc----chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence            599999876431    223566666666554321    234567899999999999999999999999999999999999


Q ss_pred             CCCC
Q 025989          188 SYVD  191 (245)
Q Consensus       188 s~lk  191 (245)
                      ..++
T Consensus        77 ~~v~   80 (82)
T PF05922_consen   77 QVVS   80 (82)
T ss_dssp             CEEE
T ss_pred             ceEe
Confidence            8764

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 23/173 (13%), Positives = 43/173 (24%), Gaps = 52/173 (30%)

Query: 85  SPLNSGSNFSDRPP-------TEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKT 137
               S S+ S            E+  L     YE+ L+V+              +     
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-------------N----- 252

Query: 138 LAQVVGSEEEAKKKIYNVSCERYFGFGCEL-----DEETSNKLEGLPGVLFVLPDSYVDP 192
                         + N      F   C++      ++ ++ L         L D +   
Sbjct: 253 --------------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMT 297

Query: 193 ENKDYGAELFVN--GEIVQRSPERQRRVEPQ-----PQRAQDRPRYNDRTRYV 238
              D    L +       Q  P       P+      +  +D     D  ++V
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.43
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	98.98
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	98.98
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	98.27
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.05
3t41_A	471	Epidermin leader peptide processing serine protea;	97.85
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	97.5
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	97.08
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	94.72
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	85.43

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.43  E-value=7e-14  Score=110.82  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             eeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCCCCC
Q 025989          111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYV  190 (245)
Q Consensus       111 ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPDs~l  190 (245)
                      +.|||+|+....     ...+..|++||.+++++ +.+...++|+|++.|+||+|+|+++|+++|+++|+|++|.||+.+
T Consensus        38 ~~YIV~lk~~~~-----~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v  111 (114)
T 2w2n_P           38 GTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  111 (114)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CcEEEEECCCCC-----HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceE
Confidence            789999975432     23456788898888764 234567999999999999999999999999999999999999865


Q ss_pred             C
Q 025989          191 D  191 (245)
Q Consensus       191 k  191 (245)
                      +
T Consensus       112 ~  112 (114)
T 2w2n_P          112 F  112 (114)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=98.98  E-value=1.1e-09  Score=80.19  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=50.7

Q ss_pred             eeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCCCCC
Q 025989          111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYV  190 (245)
Q Consensus       111 ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPDs~l  190 (245)
                      +.|||.+.....  .      +..+..+....      ..+++|+|++ |+||+|+|++++++.|+++|+|..|.||..+
T Consensus         9 ~~YIV~~k~~~~--~------~~~~~~~~~~~------g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v   73 (80)
T 3cnq_P            9 KKYIVGFKQGFK--S------CAKKEDVISEK------GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLY   73 (80)
T ss_dssp             CEEEEEECTTCC--S------HHHHHHHHHTT------TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEE
T ss_pred             CCEEEEECCCCC--h------HHHHHHHHHHc------CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEE
Confidence            689999975432  1      11122222222      3468999998 9999999999999999999999999999876


Q ss_pred             CC
Q 025989          191 DP  192 (245)
Q Consensus       191 k~  192 (245)
                      ++
T Consensus        74 ~~   75 (80)
T 3cnq_P           74 RA   75 (80)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=98.98  E-value=5.5e-10  Score=90.09  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             eeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCCCCC
Q 025989          111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYV  190 (245)
Q Consensus       111 ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPDs~l  190 (245)
                      ..|||.|.....     ...+..|.+++.+++... .....+.|+|++.|+||+|+|++++++.|+++|+|.+|.||..+
T Consensus        48 ~~YIV~~K~~~~-----~~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v  121 (124)
T 2qtw_A           48 GTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  121 (124)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CCEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence            789999975432     123445555555532100 01246899999999999999999999999999999999999865


Q ss_pred             C
Q 025989          191 D  191 (245)
Q Consensus       191 k  191 (245)
                      +
T Consensus       122 ~  122 (124)
T 2qtw_A          122 F  122 (124)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=98.27  E-value=5e-07  Score=90.70  Aligned_cols=102  Identities=20%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             eeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCCCCC
Q 025989          111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYV  190 (245)
Q Consensus       111 ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPDs~l  190 (245)
                      ..|||.|......     ...+.+.+++...+.. .....++.|+|++.|+||+++|+++++++|+++|+|.+|.||..+
T Consensus        76 g~YIV~lk~~~~~-----~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v  149 (692)
T 2p4e_P           76 GTYVVVLKEETHL-----SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  149 (692)
T ss_dssp             EEEEEEECTTCCH-----HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CcEEEEECCCCCH-----HHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccc
Confidence            4899999754321     2233333444332210 001246899999999999999999999999999999999999844


Q ss_pred             CC---------C----------cc-cCCCccee---eceeeeCCccccccC
Q 025989          191 DP---------E----------NK-DYGAELFV---NGEIVQRSPERQRRV  218 (245)
Q Consensus       191 k~---------~----------~k-dyG~d~~I---dggI~Pespsf~d~~  218 (245)
                      ..         +          .. .-|.++.|   |+||++.+|.|.+..
T Consensus       150 ~~~~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~  200 (692)
T 2p4e_P          150 FAQSIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV  200 (692)
T ss_dssp             EEC------------------------------------------------
T ss_pred             ccCCCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCce
Confidence            22         1          11 23556765   999999999998763

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.05  E-value=1.2e-05  Score=58.96  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             eeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEe-cccceeeeeecCHHHHHhhcCC--CCeEEEeCC
Q 025989          111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVS-CERYFGFGCELDEETSNKLEGL--PGVLFVLPD  187 (245)
Q Consensus       111 ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSY-t~sfnGFAArLTeEEAe~Lk~l--PGVVSVfPD  187 (245)
                      ..|||.|....   +  ...++.|..++...-       ..+.|.| .+.|+||+|.|++++++.|+..  |.|..|=+|
T Consensus         3 ~sYIV~lk~~~---~--~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D   70 (76)
T 1v5i_B            3 GKFIVIFKNDV---S--EDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (76)
T ss_dssp             EEEEEEECTTC---C--HHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ceEEEEECCCC---C--HHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence            67999996432   1  234566666665532       2478999 4899999999999999999999  889999998


Q ss_pred             CCCC
Q 025989          188 SYVD  191 (245)
Q Consensus       188 s~lk  191 (245)
                      ....
T Consensus        71 ~~v~   74 (76)
T 1v5i_B           71 HVAH   74 (76)
T ss_dssp             CEEE
T ss_pred             cEEe
Confidence            8653

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=97.85  E-value=6e-05  Score=70.26  Aligned_cols=95  Identities=6%  Similarity=0.061  Sum_probs=65.5

Q ss_pred             CCCCCCceeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEecccceeeeeecCHHHHHhhcC-CCCeE
Q 025989          104 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEG-LPGVL  182 (245)
Q Consensus       104 l~~gcd~ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSYt~sfnGFAArLTeEEAe~Lk~-lPGVV  182 (245)
                      .+.|-+.+.|||.+...           ....+.+.       ...-+++|.|. .++||+++|+++++++|++ +|+|.
T Consensus        38 ~~~~~~~~~yiv~~~~~-----------~~~~~~~~-------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~   98 (471)
T 3t41_A           38 YFQGSEELYYSVEYKNT-----------ATFNKLVK-------KKSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIK   98 (471)
T ss_dssp             -----CCEEEEEEESCH-----------HHHHHHHH-------HHTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEE
T ss_pred             eecCCCceEEEEEcCCH-----------HHHHHHHH-------hCCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCc
Confidence            45666778899964321           11112222       22345788885 4999999999999999999 99999


Q ss_pred             EEeCCCCCCCC------------------------------ccc-CCCccee---eceeeeCCcccccc
Q 025989          183 FVLPDSYVDPE------------------------------NKD-YGAELFV---NGEIVQRSPERQRR  217 (245)
Q Consensus       183 SVfPDs~lk~~------------------------------~kd-yG~d~~I---dggI~Pespsf~d~  217 (245)
                      +|.||..+.+.                              +.. -|.++.|   |+||++.+|.|.+.
T Consensus        99 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~  167 (471)
T 3t41_A           99 YINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNN  167 (471)
T ss_dssp             EEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTT
T ss_pred             EEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcC
Confidence            99999766541                              112 2667777   99999999999975

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=97.50  E-value=8.1e-05  Score=71.91  Aligned_cols=67  Identities=19%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             cceeEEecccceeeeeecCHHHHHhh-----------cCCCCeEEEeCCCCCCCC-------------------cc-cCC
Q 025989          150 KKIYNVSCERYFGFGCELDEETSNKL-----------EGLPGVLFVLPDSYVDPE-------------------NK-DYG  198 (245)
Q Consensus       150 ~sIlYSYt~sfnGFAArLTeEEAe~L-----------k~lPGVVSVfPDs~lk~~-------------------~k-dyG  198 (245)
                      .++.|.|+ .|+||+++|+++++++|           +++|+|.+|.||..+++.                   +. ..|
T Consensus        60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G  138 (539)
T 3afg_A           60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDG  138 (539)
T ss_dssp             CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCCC
T ss_pred             CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCCC
Confidence            45789996 69999999999999999           899999999999765431                   12 356


Q ss_pred             Cccee---eceeeeCCcccccc
Q 025989          199 AELFV---NGEIVQRSPERQRR  217 (245)
Q Consensus       199 ~d~~I---dggI~Pespsf~d~  217 (245)
                      .++.|   |+||...+|.|.++
T Consensus       139 ~gv~VaViDtGid~~Hpdl~~~  160 (539)
T 3afg_A          139 SGITIGIIDTGIDASHPDLQGK  160 (539)
T ss_dssp             TTCEEEEEESBCCTTSGGGTTT
T ss_pred             CCcEEEEEecCCCCCChHHhCC
Confidence            67777   99999999999876

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=97.08  E-value=0.00037  Score=64.07  Aligned_cols=67  Identities=16%  Similarity=0.072  Sum_probs=55.5

Q ss_pred             cceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCCCCCCC------------------------C------cccCCC
Q 025989          150 KKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDP------------------------E------NKDYGA  199 (245)
Q Consensus       150 ~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPDs~lk~------------------------~------~kdyG~  199 (245)
                      .++++.|.. ++||+++|+++++++|+++|+|..|.||..+++                        +      +..-|.
T Consensus        24 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~~G~  102 (395)
T 2z2z_A           24 GHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGS  102 (395)
T ss_dssp             CEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTCSSC
T ss_pred             CEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhcCCC
Confidence            457899975 999999999999999999999999999986532                        1      122566


Q ss_pred             c--cee---eceeeeCCcccccc
Q 025989          200 E--LFV---NGEIVQRSPERQRR  217 (245)
Q Consensus       200 d--~~I---dggI~Pespsf~d~  217 (245)
                      +  +.|   |+||.+.+|.|.+.
T Consensus       103 g~~v~VaViDtGid~~Hp~l~~~  125 (395)
T 2z2z_A          103 VSVIQVAVLDTGVDYDHPDLAAN  125 (395)
T ss_dssp             CTTCEEEEEESCBCTTCTTTGGG
T ss_pred             CCcEEEEEEcCCCCCCChhHhhc
Confidence            6  666   99999999999876

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=94.72  E-value=0.025  Score=40.01  Aligned_cols=42  Identities=19%  Similarity=0.071  Sum_probs=37.0

Q ss_pred             hhcceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCCCCC
Q 025989          148 AKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYV  190 (245)
Q Consensus       148 Ak~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPDs~l  190 (245)
                      ..-+++|.|. .++|++|.|+++.+++|++.|||..|-+|...
T Consensus        21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v   62 (65)
T 2z30_B           21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA   62 (65)
T ss_dssp             GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred             CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence            3456889985 69999999999999999999999999999754

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=85.43  E-value=0.16  Score=49.58  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=22.0

Q ss_pred             cccCCCccee---eceeeeCCcccccc
Q 025989          194 NKDYGAELFV---NGEIVQRSPERQRR  217 (245)
Q Consensus       194 ~kdyG~d~~I---dggI~Pespsf~d~  217 (245)
                      +..+|++|+|   |+||||++|+|.|+
T Consensus        17 ~~~~G~gViVgViDTGId~~Hp~f~d~   43 (621)
T 3vta_A           17 RSQVESNIVVGVLDTGIWPESPSFDDE   43 (621)
T ss_dssp             CHHHHTTCEEEEEESCBCTTSGGGCCT
T ss_pred             cCCCCCCCEEEEEecCCCCCChhhcCC
Confidence            5678999999   99999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.05
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.03

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=5.6e-06  Score=58.86  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=49.9

Q ss_pred             eeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEecccceeeeeecCHHHHHhhcCCCCeEEEeCCCCC
Q 025989          111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYV  190 (245)
Q Consensus       111 ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSYt~sfnGFAArLTeEEAe~Lk~lPGVVSVfPDs~l  190 (245)
                      +-|||.+.......     ....+.+++.+       ...++.+.|+ .++||+|+|++++++.|+..|+|..|=+|...
T Consensus         2 ~~YIV~fK~~~~~~-----~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~   68 (71)
T d1scjb_           2 KKYIVGFKQTMSAM-----SSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIA   68 (71)
T ss_dssp             EEEEEEECSSSSCC-----SHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEE
T ss_pred             CcEEEEECCCCChH-----HHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEE
Confidence            57999997543221     22333333332       2345789997 69999999999999999999999999999865


Q ss_pred             C
Q 025989          191 D  191 (245)
Q Consensus       191 k  191 (245)
                      +
T Consensus        69 ~   69 (71)
T d1scjb_          69 H   69 (71)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.03  E-value=6.4e-06  Score=58.62  Aligned_cols=66  Identities=18%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             eeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCChhhhhcceeEEec-ccceeeeeecCHHHHHhhcCCCC--eEEEeCC
Q 025989          111 EHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSC-ERYFGFGCELDEETSNKLEGLPG--VLFVLPD  187 (245)
Q Consensus       111 ktYIVyMd~p~~~~ps~~~~~~~h~s~LaSVLgS~eeAk~sIlYSYt-~sfnGFAArLTeEEAe~Lk~lPG--VVSVfPD  187 (245)
                      .-|||.|.....     ...++.+..++...-       ..+.+.|. +.|+||+|+|+|++++.|+.+|+  |-.|=+|
T Consensus         3 G~YIVvlK~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D   70 (72)
T d1v5ib1           3 GKFIVIFKNDVS-----EDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (72)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ccEEEEECCCCC-----HHHHHHHHHHHHhcC-------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence            469999975321     234455555555432       23567777 79999999999999999999776  9888776


Q ss_pred             C
Q 025989          188 S  188 (245)
Q Consensus       188 s  188 (245)
                      .
T Consensus        71 ~   71 (72)
T d1v5ib1          71 H   71 (72)
T ss_dssp             C
T ss_pred             C
Confidence            4