Citrus Sinensis ID: 025994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQEDD
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccEEEEEccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccHHHHHHccccc
Coil and Loop (DISEMBL)
mreagswdewVGVHRLMkdteanrhrqpvftkkrdedknlksghalqmkprssnvgrgrkrkndslnketnglqmenfvniqippplkkqlvdDCEFITHlgklvklprtpnvddILEKYCDyrskkdglvadstGEIVKGLRCYFDKALPIMLLYKSEREqyedsmaadvspssvygAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFflsryhsaedvetsankqedd
Flexible Loop (DISEMBL)
mreagswdewvgvhrlmkdteanrhrqpvftkkrdedknlksghalqmkprssnvgrgrkrkndslnketnglqmenfVNIQIPPPLKKQLVDDCEFITHlgklvklprtpnvDDILEKYCdyrskkdglvadstgeivKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFlsryhsaedvetsankqedd
Low Complexity Region (SEG)
MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQEDD
Disordered region (IsUnstruct)
******WDEWVGVHR************************************************************ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKS****************SVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRY****************
Disordered Region (DISOPRED)
**EAGSWDEWVGVHRLMKDTE*****************************************************MENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA*************
Disordered Region (DISEMBL)
MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQM****************SLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHS**************
Disordered Region (DISPRO)
*****SWDEWVGVHRLMKDTEANRHRQPVFTKKR**************************************LQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDV*TS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQEDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q54RM0	379	NuA4 complex subunit EAF3	yes	no	0.673	0.435	0.417	2e-30
Q6C9M9	387	Chromatin modification-re	yes	no	0.902	0.571	0.329	1e-27
Q5BBV4	327	Chromatin modification-re	yes	no	0.930	0.697	0.350	2e-27
Q4P827	303	Chromatin modification-re	N/A	no	0.8	0.646	0.337	3e-27
Q6AYU1	323	Mortality factor 4-like p	yes	no	0.922	0.699	0.337	2e-26
P60762	362	Mortality factor 4-like p	yes	no	0.922	0.624	0.337	3e-26
Q9UBU8	362	Mortality factor 4-like p	yes	no	0.922	0.624	0.337	3e-26
Q6BT38	316	Chromatin modification-re	yes	no	0.861	0.667	0.344	4e-26
Q5NVP9	323	Mortality factor 4-like p	yes	no	0.922	0.699	0.325	5e-26
Q4WPW2	330	Chromatin modification-re	yes	no	0.930	0.690	0.320	3e-24

>sp|Q54RM0|EAF3_DICDI NuA4 complex subunit EAF3 homolog OS=Dictyostelium discoideum GN=DDB_G0283075 PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 10/175 (5%)

Query: 60  KRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEK 119
           +++NDS   +++  Q   F++I+IP  LK +LVDD   I +   ++ LP++PNV DIL K
Sbjct: 202 RKRNDS---KSSHFQSTKFIDIEIPLSLKNKLVDDWNSINNEKSILSLPKSPNVKDILNK 258

Query: 120 YCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADV--SPSSVY 177
             +   K     +    E++ G++ YF+KAL  +LLYK ER QY+  +  +   S S +Y
Sbjct: 259 IIEENDK-----SSECKEVINGIKQYFNKALGTLLLYKFERPQYDSILKTNPKKSMSDIY 313

Query: 178 GAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA 232
           GAEHLLRLFVKLP+LLV + +EE+T+T L+     +L++L+K+ ST FL  Y  A
Sbjct: 314 GAEHLLRLFVKLPQLLVISNLEEKTITQLKDAFEIVLEYLEKNSSTLFLKEYTIA 368

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Also component of a complex which acts to repress transcription by deacetylation of nucleosomal histones.
Dictyostelium discoideum (taxid: 44689)

>sp|Q6C9M9|EAF3_YARLI Chromatin modification-related protein EAF3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=EAF3 PE=3 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 132/264 (50%), Gaps = 43/264 (16%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQ-------------------------------PVFTKKR 34
           +WDEWVG  R++   E N   Q                               P  T KR
Sbjct: 116 TWDEWVGEERVLALNEDNIKLQKELKAAALAAAKKGKDFDALAPPEALSETASPAPTTKR 175

Query: 35  DEDKNLKSGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDD 94
              K++ S  +    PR     RG     + L KE + L+ +  + + +P  LK QLVDD
Sbjct: 176 ---KSMASKDSPAEGPRPVKR-RGGLAALEDLEKEDDYLKRKE-IALVVPDKLKAQLVDD 230

Query: 95  CEFITHLGKLVKLPRTPNVDDILEKY---CDYRSKKDGLVADSTGEIVKGLRCYFDKALP 151
            EF+T   +LV LPR   V DIL+++    + + +     AD   E+V G++ YFD++L 
Sbjct: 231 WEFVTKDHQLVGLPRKVTVVDILKEFKKEAEAKYRPGSADADILNEVVSGIKLYFDRSLG 290

Query: 152 IMLLYKSEREQY----EDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQ 207
            +LLY+ EREQY    +    ++ + S VYGAEHLLRLFV LP L+    ++ +++ +L+
Sbjct: 291 SILLYRFEREQYLQITQSPDHSNKTMSEVYGAEHLLRLFVSLPGLIAMTNMDAQSVAVLK 350

Query: 208 HKLVDLLKFLQKHQSTFFLSRYHS 231
             L D ++FL  HQ T+FL   ++
Sbjct: 351 EHLEDFVRFLSTHQKTYFLKEAYT 374

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q5BBV4|EAF3_EMENI Chromatin modification-related protein eaf3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=eaf3 PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/254 (35%), Positives = 132/254 (51%), Gaps = 26/254 (10%)

Query: 5   GSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLK-------------SGH--ALQMK 49
            +WD+WV   RL K TE NR  +   T +R+ +  L+             S H  A   +
Sbjct: 54  NTWDDWVPQDRLRKFTEENR--ELATTLRREAEAALRQKSTKTSLKKKGGSDHSSARGSE 111

Query: 50  PRSSNV-GRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLP 108
            R ++V GRG KR  D+  ++         V I +P  LK  LVDD E +T   ++V LP
Sbjct: 112 ERQTSVPGRGTKRARDNDIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALP 171

Query: 109 RTPNVDDILEKYC-DYRSKKDGLV-ADSTGEIVKGLRCYFDKALPIMLLYKSEREQYE-- 164
              +V+ IL+ Y  + R K+ G    D   E+V G+R YFDK+L  +LLY+ EREQY   
Sbjct: 172 AKSSVNQILDDYLKEERPKRTGSSEVDVLEEVVMGIRDYFDKSLDKILLYRFEREQYRVL 231

Query: 165 ----DSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220
               +S  AD  P  VYGAEHL RLF  +PEL+    ++ ++   L+ +L     +L K+
Sbjct: 232 RKRWESETADKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTIWLSKN 291

Query: 221 QSTFFLSRYHSAED 234
            + +F +RY +A +
Sbjct: 292 SNHYFATRYVTASN 305

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q4P827|EAF3_USTMA Chromatin modification-related protein EAF3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=EAF3 PE=3 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 123/264 (46%), Gaps = 68/264 (25%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTK------------------------KRDEDKNLK 41
           +WDEWV   RL+K  + N  R+    +                        KR +D  L 
Sbjct: 52  TWDEWVPETRLLKHNDENLARKATLQEAAKAGSLISSAEKSAASTSAASSLKRAKDSEL- 110

Query: 42  SGHALQMKPRSSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHL 101
                   P   +  RG KR  + +  E   L+    V I +P  LK QLVDD E IT  
Sbjct: 111 --------PDRKSASRGTKRSREHVEAEEEFLKRPE-VKISLPDELKLQLVDDWENITKN 161

Query: 102 GKLVKLPRTPNVDDILEKY---------CDYRSKKDGLVADSTGEIVKGLRCYFDKALPI 152
           G+LV LPR P V DIL+ Y          D   ++   + D   E++KGL+ YFD++L  
Sbjct: 162 GQLVPLPRNPCVKDILDDYRKHYLASKRSDPSKQRSPQLVD---EVLKGLKLYFDRSLGQ 218

Query: 153 MLLYKSEREQYED----------------------SMAADVSPSSVYGAEHLLRLFVKLP 190
            LLY+ ER QY D                      SM  ++ PS+VYGAEHLLRLFV LP
Sbjct: 219 NLLYRFERAQYVDYRKKNGPKMGDGDVGNARTANGSMGGEMEPSNVYGAEHLLRLFVTLP 278

Query: 191 ELLVHAKIEEETLTLLQHKLVDLL 214
            ++VH  ++ E+++LL+  L + L
Sbjct: 279 MIIVHTSMDAESISLLKEHLAEFL 302

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q6AYU1|MO4L1_RAT Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 134/270 (49%), Gaps = 44/270 (16%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDED--------------------KNL--KSG 43
           +WDEWV   R++K  +AN  +Q    K   E                     KN+  K+ 
Sbjct: 52  NWDEWVPESRVLKYVDANLQKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTK 111

Query: 44  HALQMKPRSSNVG----------RGRKRKNDSL-NKETNGLQMENFVNIQIPPPLKKQLV 92
              Q  P + + G          + R R + ++ N+ET   ++E  V ++IP  LK  LV
Sbjct: 112 KNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE--VKVKIPEELKPWLV 169

Query: 93  DDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STGEIVKGLRCYFDKAL 150
           DD + IT   +L  LP   NVD ILE Y +Y+  +        +  E+V G++ YF+  L
Sbjct: 170 DDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVML 229

Query: 151 PIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQH 208
              LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L +  ++E++L LL +
Sbjct: 230 GTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLN 289

Query: 209 KLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
            L D LK+L K+ +T F     SA D E +
Sbjct: 290 YLHDFLKYLAKNSATLF-----SASDYEVA 314

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones.Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Rattus norvegicus (taxid: 10116)

>sp|P60762|MO4L1_MOUSE Mortality factor 4-like protein 1 OS=Mus musculus GN=Morf4l1 PE=2 SV=2

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 133/270 (49%), Gaps = 44/270 (16%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDED--------------------KNL--KSG 43
           SWDEWV   R++K  + N  +Q    K   E                     KN+  K+ 
Sbjct: 91  SWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTK 150

Query: 44  HALQMKPRSSNVG----------RGRKRKNDSL-NKETNGLQMENFVNIQIPPPLKKQLV 92
              Q  P + + G          + R R + ++ N+ET   ++E  V ++IP  LK  LV
Sbjct: 151 KNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE--VKVKIPEELKPWLV 208

Query: 93  DDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STGEIVKGLRCYFDKAL 150
           DD + IT   +L  LP   NVD ILE Y +Y+  +        +  E+V G++ YF+  L
Sbjct: 209 DDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVML 268

Query: 151 PIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQH 208
              LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L +  ++E++L LL +
Sbjct: 269 GTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLN 328

Query: 209 KLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
            L D LK+L K+ +T F     SA D E +
Sbjct: 329 YLHDFLKYLAKNSATLF-----SASDYEVA 353

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Mus musculus (taxid: 10090)

>sp|Q9UBU8|MO4L1_HUMAN Mortality factor 4-like protein 1 OS=Homo sapiens GN=MORF4L1 PE=1 SV=2

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 133/270 (49%), Gaps = 44/270 (16%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDED--------------------KNL--KSG 43
           SWDEWV   R++K  + N  +Q    K   E                     KN+  K+ 
Sbjct: 91  SWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTK 150

Query: 44  HALQMKPRSSNVG----------RGRKRKNDSL-NKETNGLQMENFVNIQIPPPLKKQLV 92
              Q  P + + G          + R R + ++ N+ET   ++E  V ++IP  LK  LV
Sbjct: 151 KNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE--VKVKIPEELKPWLV 208

Query: 93  DDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STGEIVKGLRCYFDKAL 150
           DD + IT   +L  LP   NVD ILE Y +Y+  +        +  E+V G++ YF+  L
Sbjct: 209 DDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVML 268

Query: 151 PIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQH 208
              LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L +  ++E++L LL +
Sbjct: 269 GTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLN 328

Query: 209 KLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
            L D LK+L K+ +T F     SA D E +
Sbjct: 329 YLHDFLKYLAKNSATLF-----SASDYEVA 353

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Homo sapiens (taxid: 9606)

>sp|Q6BT38|EAF3_DEBHA Chromatin modification-related protein EAF3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=EAF3 PE=3 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 121/238 (50%), Gaps = 27/238 (11%)

Query: 5   GSWDEWVGVHRLMKDTEANRHRQP----------VFTKKRDEDKNLKSGHALQMKPRSSN 54
             WDEWVG  R+++  EAN   Q           +  K + E     +G   +  P SS 
Sbjct: 73  AKWDEWVGPDRILEYNEANVQAQKELKEQLTKAKIKPKVKAEPAVASTGTKKRGMPVSSA 132

Query: 55  VGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVD 114
               +K+K D            N V+I + P LK  LVDD EFIT   K++ +P +  V 
Sbjct: 133 STVTKKKKTDP--------NRVNEVSIFMKPELKYILVDDWEFITKERKIINIPSSRPVT 184

Query: 115 DILEKYCDYRSKKDGLVA----DSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSM--- 167
            IL  Y   +SKKD   +    D   EI++GL  YF+K+L ++LLYK ER QY + +   
Sbjct: 185 VILNDYL--QSKKDQDTSHQTMDVINEIMQGLELYFNKSLSLILLYKFERLQYMNLLKEH 242

Query: 168 AADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFF 225
             D+ PS +YG EHLLRLFV LP L+    ++  ++ +L  +  D+L+F+  + S + 
Sbjct: 243 GDDLRPSELYGVEHLLRLFVALPGLIAQTTMDSVSINVLVKQSKDILEFITDNMSVYL 300

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q5NVP9|MO4L1_PONAB Mortality factor 4-like protein 1 OS=Pongo abelii GN=MORF4L1 PE=2 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 44/270 (16%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDE----------------------DKNLKSG 43
           +WDEWV   R++K  + N  +Q    K   E                      + ++K+ 
Sbjct: 52  NWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVDVKTK 111

Query: 44  HALQMKPRSSNVG----------RGRKRKNDSL-NKETNGLQMENFVNIQIPPPLKKQLV 92
              Q  P + + G          + R R + ++ N+ET   ++E  V ++IP  LK  LV
Sbjct: 112 KNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE--VKVKIPEELKPWLV 169

Query: 93  DDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STGEIVKGLRCYFDKAL 150
           DD + IT   +L  LP   NVD ILE Y +Y+  +        +  E+V G++ YF+  L
Sbjct: 170 DDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVML 229

Query: 151 PIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQH 208
              LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L +  ++E++L LL +
Sbjct: 230 GTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLN 289

Query: 209 KLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
            L D LK+L K+ +T F     SA D E +
Sbjct: 290 YLHDFLKYLAKNSATLF-----SASDYEVA 314

Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Also component of the mSin3A complex which acts to repress transcription by deacetylation of nucleosomal histones. Required for homologous recombination repair (HRR) and resistance to mitomycin C (MMC). Involved in the localization of PALB2, BRCA2 and RAD51, but not BRCA1, to DNA-damage foci.

Pongo abelii (taxid: 9601)

>sp|Q4WPW2|EAF3_ASPFU Chromatin modification-related protein eaf3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=eaf3 PE=3 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 25/253 (9%)

Query: 5   GSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKS-------------GHALQMKPR 51
            +WD+WV   RL K T+ NR       ++ +     KS             G A   + R
Sbjct: 54  NTWDDWVPQDRLRKFTDENRELATTLRREAEAAFRQKSTKTTLKRKAGSDRGSARDSEER 113

Query: 52  SSNV-GRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRT 110
            ++V GR  KR  D+  ++         V I +P  LK  LVDD E +T   ++V LP  
Sbjct: 114 QTSVPGRVTKRARDNEIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPAK 173

Query: 111 PNVDDILEKYCDYRSKKDGLVAD--STGEIVKGLRCYFDKALPIMLLYKSEREQYE---- 164
            +V+ ILE +      K    AD     E++ G++ YFDKAL  +LLY+ EREQY+    
Sbjct: 174 ASVNQILEDFVAEEKPKRTSSADLDVLEEVIMGIKEYFDKALDKILLYRFEREQYKALRK 233

Query: 165 --DSMAADVS---PSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQK 219
             ++ + + S   P  VYGAEHL RLF  +PEL+    ++ ++   L+ +L     +L K
Sbjct: 234 KWEAGSGEYSEKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTLWLSK 293

Query: 220 HQSTFFLSRYHSA 232
           +   +F +RY +A
Sbjct: 294 NSDKYFATRYMTA 306

Involved in deacetylation of histones, chromatin assembly and chromosome segregation. May act as a transcriptional oscillator, directing histone deacetylases to specific chromosomal domains. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
356514437	325	PREDICTED: male-specific lethal 3 homolo	0.975	0.735	0.631	3e-81
449447041	313	PREDICTED: mortality factor 4-like prote	0.963	0.753	0.639	8e-80
356510513	322	PREDICTED: nuA4 complex subunit EAF3 hom	0.963	0.732	0.627	6e-79
359492003	305	PREDICTED: mortality factor 4-like prote	0.910	0.731	0.625	7e-78
224137656	272	predicted protein [Populus trichocarpa]	0.902	0.812	0.643	7e-78
302142251	306	unnamed protein product [Vitis vinifera]	0.914	0.732	0.621	2e-77
255567903	318	chromatin binding protein, putative [Ric	0.926	0.713	0.591	5e-75
224094262	332	predicted protein [Populus trichocarpa]	0.926	0.683	0.595	1e-74
356511911	319	PREDICTED: nuA4 complex subunit EAF3 hom	0.910	0.699	0.597	2e-73
255538164	341	chromatin binding protein, putative [Ric	0.853	0.612	0.635	4e-73

>gi|356514437|ref|XP_003525912.1| PREDICTED: male-specific lethal 3 homolog [Glycine max]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 181/239 (75%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDS 65
           SWDEW+ + RLMK TE N  ++    +K   DKN K       K +++NV RGRKR+N+S
Sbjct: 87  SWDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKIPRGSLAKSKTTNVSRGRKRRNES 146

Query: 66  LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRS 125
           + KE   + +E  VNIQIPP LKKQLVDDCEFITHLGKLVKLPRTPNV  IL+ Y DYR 
Sbjct: 147 VIKEKPAVDLEKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRL 206

Query: 126 KKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRL 185
           KK GL+ DS  EI+KGL CYFDKALP+MLLYK+E +QY+++  A+V PS++YGAEHLLRL
Sbjct: 207 KKCGLMGDSVEEIMKGLSCYFDKALPVMLLYKNEHQQYQEACPANVFPSAIYGAEHLLRL 266

Query: 186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQED 244
           FVKLPELL HA IEE+TL  LQ  L+D L+FLQK+QSTFFLS YH AE +E S NKQ D
Sbjct: 267 FVKLPELLFHASIEEKTLVELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQGD 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447041|ref|XP_004141278.1| PREDICTED: mortality factor 4-like protein 1-like [Cucumis sativus] gi|449508171|ref|XP_004163239.1| PREDICTED: mortality factor 4-like protein 1-like [Cucumis sativus]

 Score =  302 bits (774), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/241 (63%), Positives = 186/241 (77%), Gaps = 5/241 (2%)

Query: 4   AGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKN 63
           + +WDEWVG+ RL+K TE N  +Q    +KR  DK  K+  A  +KP+  NV +G+KRKN
Sbjct: 78  SKTWDEWVGLDRLLKFTEENVQKQQELNEKRGTDK--KASRASHIKPK--NVVKGKKRKN 133

Query: 64  DSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDY 123
           D+ +KE   + +E  V+IQIP  LKKQLVDD EF+THLGKLVKLPRTPNVDDI++KY +Y
Sbjct: 134 DA-SKEKGAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVDDIMKKYLEY 192

Query: 124 RSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLL 183
           R KKD    +S GEIVKGL CYFDKALP+MLLYKSER+QYE+ M  DVSPSS+YGAEHLL
Sbjct: 193 RLKKDATKDESIGEIVKGLICYFDKALPVMLLYKSERQQYEELMINDVSPSSIYGAEHLL 252

Query: 184 RLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQE 243
           RLFV+LPELL  A IEEETL  LQ KLVDLLKFL+K+Q+ FFLS YH  E++ETS N  +
Sbjct: 253 RLFVRLPELLSQANIEEETLMELQQKLVDLLKFLRKNQNAFFLSSYHVPENMETSTNNAD 312

Query: 244 D 244
           D
Sbjct: 313 D 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510513|ref|XP_003523982.1| PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 148/236 (62%), Positives = 176/236 (74%)

Query: 7   WDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL 66
           WDEW+ + RLMK TE N  ++    +K   DKN K       K + +NV RGRKR+N+S+
Sbjct: 82  WDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKVPRGSLAKSKPTNVSRGRKRRNESV 141

Query: 67  NKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSK 126
            K    +  +  VNIQIPP LKKQLVDDCEFITHLGKLVKLPRTPNV  IL+ Y DYR K
Sbjct: 142 IKGKPAVDPDKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLK 201

Query: 127 KDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLF 186
           K G V DS  EI+KGL CYFDKALP+MLLYK+ER+QY+++  A+V PS++YGAEHLLRLF
Sbjct: 202 KCGSVGDSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLF 261

Query: 187 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETSANKQ 242
           VKLPELL HA +EEETL  LQ  L+D L+FLQK+QSTFFLS YH AE +E S NKQ
Sbjct: 262 VKLPELLFHASVEEETLMELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQ 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492003|ref|XP_002283143.2| PREDICTED: mortality factor 4-like protein 1-like [Vitis vinifera]

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/227 (62%), Positives = 179/227 (78%), Gaps = 4/227 (1%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDS 65
           +WDEWVG+ RL+K +E N  +Q    KK+  DKN K   A Q+KP+  N  RG+K KND 
Sbjct: 82  NWDEWVGMDRLLKFSEENVQKQKALGKKQGIDKNTKPVRASQIKPK--NFARGKKWKNDC 139

Query: 66  LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRS 125
           + KE   + +E  VNIQIPP LKKQLVDDCEFITHLG+L++LPR P VD IL+KY DYR 
Sbjct: 140 VTKE--AIPVEKLVNIQIPPTLKKQLVDDCEFITHLGQLIRLPRAPTVDKILKKYLDYRI 197

Query: 126 KKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRL 185
           K+DG+++DS GEI+KGLRCYFDKALP+MLLY+ ER+QY++++A +VSPS++YGAEHLLRL
Sbjct: 198 KRDGMISDSAGEILKGLRCYFDKALPVMLLYERERQQYQEAIANNVSPSTIYGAEHLLRL 257

Query: 186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA 232
           FVKLPELL HA IE+ET   LQ +L+D LKFLQK+QS FFL+ Y S+
Sbjct: 258 FVKLPELLFHANIEKETSKELQMELLDFLKFLQKNQSAFFLTSYISS 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137656|ref|XP_002327180.1| predicted protein [Populus trichocarpa] gi|222835495|gb|EEE73930.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 148/230 (64%), Positives = 174/230 (75%), Gaps = 9/230 (3%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSN---------VG 56
           +WDEWVG  RL+K TE N  +Q    ++ + +   K+  A QMK ++S          V 
Sbjct: 43  TWDEWVGTDRLLKHTEENVQKQKALKERLEMEMKTKAVQAPQMKLKNSGGYCSGDIYAVS 102

Query: 57  RGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDI 116
           RGRKRKND+LNKE + + +E  VN+QIPP LKKQLVDDCEFITH  KLVKLPR PNV DI
Sbjct: 103 RGRKRKNDNLNKEKDLVPLEKLVNLQIPPTLKKQLVDDCEFITHQSKLVKLPRAPNVQDI 162

Query: 117 LEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSV 176
            +KYC+YRSKKD ++ +ST EI+KGLRCYFDKALP MLLYKSER+QY  ++  DVSPS V
Sbjct: 163 CKKYCEYRSKKDVMMPESTAEIMKGLRCYFDKALPAMLLYKSERQQYTYAIRDDVSPSMV 222

Query: 177 YGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL 226
           YGAEHLLRLFVKLPELLVHA IEEETLT L  KLVD L+FLQK+QS FFL
Sbjct: 223 YGAEHLLRLFVKLPELLVHANIEEETLTELHQKLVDFLRFLQKNQSAFFL 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142251|emb|CBI19454.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/227 (62%), Positives = 179/227 (78%), Gaps = 3/227 (1%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDS 65
           +WDEWVG+ RL+K +E N  +Q    KK+  DKN K   A Q+KP+  N  RG+K KND 
Sbjct: 82  NWDEWVGMDRLLKFSEENVQKQKALGKKQGIDKNTKPVRASQIKPK--NFARGKKWKNDC 139

Query: 66  LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRS 125
           + K+   + +E  VNIQIPP LKKQLVDDCEFITHLG+L++LPR P VD IL+KY DYR 
Sbjct: 140 VTKK-EAIPVEKLVNIQIPPTLKKQLVDDCEFITHLGQLIRLPRAPTVDKILKKYLDYRI 198

Query: 126 KKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRL 185
           K+DG+++DS GEI+KGLRCYFDKALP+MLLY+ ER+QY++++A +VSPS++YGAEHLLRL
Sbjct: 199 KRDGMISDSAGEILKGLRCYFDKALPVMLLYERERQQYQEAIANNVSPSTIYGAEHLLRL 258

Query: 186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA 232
           FVKLPELL HA IE+ET   LQ +L+D LKFLQK+QS FFL+ Y S+
Sbjct: 259 FVKLPELLFHANIEKETSKELQMELLDFLKFLQKNQSAFFLTSYISS 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567903|ref|XP_002524929.1| chromatin binding protein, putative [Ricinus communis] gi|223535764|gb|EEF37426.1| chromatin binding protein, putative [Ricinus communis]

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 142/240 (59%), Positives = 174/240 (72%), Gaps = 13/240 (5%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------ 53
           +WDEW+G  RL+K TE N  +Q    KK+  DK+ K G + Q KP++S            
Sbjct: 69  NWDEWIGTDRLLKHTEENVVKQQALEKKQGVDKSSKLGRSAQTKPKTSTDAKVDKEDAKS 128

Query: 54  NVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNV 113
           NV +G+KRK+DS   E + L  E  V IQIP  LKKQLVDD EF+    KLV+LPR+PNV
Sbjct: 129 NVAKGKKRKSDS-GIEKDNLSAEKLVKIQIPSTLKKQLVDDWEFVIQQDKLVRLPRSPNV 187

Query: 114 DDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSP 173
           DDIL KY +YRSKKDG++ DS GEI+KG+RCYFDKALP+MLLYK ER QY+D++  D SP
Sbjct: 188 DDILTKYLEYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERHQYDDAVENDASP 247

Query: 174 SSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAE 233
           S++YGAEHLLRLFVKLPELL +  IEEETL  LQ KL+D LKFLQK+QSTFFLS Y  ++
Sbjct: 248 STIYGAEHLLRLFVKLPELLAYVNIEEETLARLQQKLLDFLKFLQKNQSTFFLSAYDGSK 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094262|ref|XP_002310115.1| predicted protein [Populus trichocarpa] gi|222853018|gb|EEE90565.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/240 (59%), Positives = 175/240 (72%), Gaps = 13/240 (5%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------ 53
           +WDEWVG+ RLMK T  N  +Q    KK+  DK+LK G + Q KP++S            
Sbjct: 84  NWDEWVGMDRLMKHTPDNVLKQQALEKKQGVDKSLKPGRSSQTKPKNSTDSKMDKEDPKS 143

Query: 54  NVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNV 113
           NV +G+KRK+DS   E + L +E  V IQIP  LKKQLVDD EF+T   K VKLPR+PNV
Sbjct: 144 NVAKGKKRKSDS-GMEKDNLPVEKLVKIQIPSTLKKQLVDDWEFVTQQDKFVKLPRSPNV 202

Query: 114 DDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSP 173
           DDIL KY +Y SKKDG++ DS GEI+KG+RCYFDKALP+MLLYK ER+QY D++  DVSP
Sbjct: 203 DDILTKYLEYMSKKDGMITDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDTVKIDVSP 262

Query: 174 SSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAE 233
           S++YGAEHLLRLFVKLPELL +  IEE+T T LQ KL+D LKFL K+QSTFFLS Y  ++
Sbjct: 263 STIYGAEHLLRLFVKLPELLAYVNIEEDTSTRLQQKLLDFLKFLHKNQSTFFLSAYDGSK 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511911|ref|XP_003524665.1| PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/236 (59%), Positives = 175/236 (74%), Gaps = 13/236 (5%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------ 53
           +WDEWVG  RLMK TE N  +Q    KK++ DKN+KSG + Q K +SS            
Sbjct: 70  NWDEWVGEERLMKHTEENVMKQQALDKKQNVDKNVKSGRSSQGKAKSSTDAKMDKEDVKN 129

Query: 54  NVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNV 113
           NV +G+KRK+D+  ++ +G  +E  V IQIP  LKKQLVDD + +T   KLVKLPR+P V
Sbjct: 130 NVSKGKKRKHDAGVEKGSGT-VEKLVKIQIPATLKKQLVDDWDSVTQQDKLVKLPRSPTV 188

Query: 114 DDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSP 173
           D+IL KY +Y+SKKDG+  DS GEI+KG+RCYFDKALP+MLLYK ER+QY D++  +VSP
Sbjct: 189 DEILTKYLEYKSKKDGIAPDSIGEILKGIRCYFDKALPMMLLYKKERKQYNDAIVDNVSP 248

Query: 174 SSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRY 229
           S++YGAEHLLRLFVKLPELL +  IEEETL  LQ KL+D LKFLQK+QSTFFLS Y
Sbjct: 249 STIYGAEHLLRLFVKLPELLAYVTIEEETLNRLQQKLLDFLKFLQKNQSTFFLSAY 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538164|ref|XP_002510147.1| chromatin binding protein, putative [Ricinus communis] gi|223550848|gb|EEF52334.1| chromatin binding protein, putative [Ricinus communis]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 136/214 (63%), Positives = 170/214 (79%), Gaps = 5/214 (2%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDS 65
           +WDEWVGV+RLMK  + N   Q     K+ ++KN K+G    +KP+SS+  RGRKRK+DS
Sbjct: 89  NWDEWVGVNRLMKYNDENV--QKFLVTKQGQEKNTKAGRGSHIKPKSSSAARGRKRKSDS 146

Query: 66  LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRS 125
           L+KE   L +E  VN+QIPP LKKQL+DDC+FITHLGKLVKLPRTPNVDDI++KY DYR 
Sbjct: 147 LSKEKGILSLEKLVNLQIPPTLKKQLLDDCQFITHLGKLVKLPRTPNVDDIMKKYLDYRL 206

Query: 126 KKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRL 185
           KKDGL++++ GEI+KGL  YF+KAL +MLLYKSEREQY D++  DVSPS+VYGAEHLLRL
Sbjct: 207 KKDGLISEAVGEIIKGLCWYFNKALVVMLLYKSEREQYTDAIKDDVSPSTVYGAEHLLRL 266

Query: 186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQK 219
           FVKLPELL++A IE+ETL  LQ    D+L + Q+
Sbjct: 267 FVKLPELLIYANIEDETLMELQQ---DMLAYEQR 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2024725	327	AT1G02740 [Arabidopsis thalian	0.942	0.706	0.562	9.4e-66
TAIR|locus:2114980	320	AT4G37280 [Arabidopsis thalian	0.975	0.746	0.511	8.8e-63
DICTYBASE|DDB_G0283075	379	DDB_G0283075 "NuA4 histone H4	0.779	0.503	0.386	3.1e-35
UNIPROTKB|D4AAF9	363	Morf4l1 "Mortality factor 4-li	0.828	0.559	0.362	1.6e-30
RGD|2322736	324	LOC100360113 "mortality factor	0.828	0.626	0.362	3.3e-30
UNIPROTKB|F1N4R2	296	MORF4L1 "Uncharacterized prote	0.922	0.763	0.353	2.7e-29
UNIPROTKB|H0YLJ3	269	MORF4L1 "Mortality factor 4-li	0.848	0.773	0.354	1.9e-26
UNIPROTKB|E1BFB6	294	E1BFB6 "Uncharacterized protei	0.914	0.761	0.337	1.1e-25
UNIPROTKB|J9P9V5	296	MORF4L1 "Uncharacterized prote	0.922	0.763	0.333	1.1e-25
ASPGD|ASPL0000050701	327	AN1976 [Emericella nidulans (t	0.902	0.675	0.353	1.8e-25

TAIR|locus:2024725 AT1G02740 [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 130/231 (56%), Positives = 170/231 (73%)

Query:     6 SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDS 65
             SWDEW+ +  L+K ++ N  +Q     K+   K+  +    +MKPRS NV RGRKRK DS
Sbjct:    93 SWDEWIRLDCLLKHSDENIEKQKEQGLKQQGIKSAMAWKVSKMKPRSPNVARGRKRKQDS 152

Query:    66 LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRS 125
             ++ E N L  +N ++  IPP L+KQL+DD EF+T + KLV+LPR+PNVD IL+KY D + 
Sbjct:   153 VDTEKNVLPSDNLLSFNIPPALRKQLLDDFEFVTQMQKLVQLPRSPNVDGILKKYIDSQM 212

Query:   126 KKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRL 185
             KK G V DS  EI+KGLRCYFDKALP+MLLY +ER+QYE+S++  VSPS+VYGAEHLLRL
Sbjct:   213 KKHGRVTDSLEEILKGLRCYFDKALPVMLLYNNERKQYEESVSGGVSPSTVYGAEHLLRL 272

Query:   186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVE 236
             FVKLPELLVH  + EETL  LQ   VD+L+FL+K+QS  F+S Y + E++E
Sbjct:   273 FVKLPELLVHVNMAEETLKELQDNFVDILRFLRKNQSVLFVSTYKAVEEME 323

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2114980 AT4G37280 [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 129/252 (51%), Positives = 170/252 (67%)

Query:     6 SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSS------------ 53
             +WDEWV   RL+K TE N  +Q    KK+  +K  KSG + Q K RSS            
Sbjct:    70 NWDEWVSADRLLKHTEENLVKQKALDKKQGVEKGTKSGRSAQTKTRSSADTKADKDDTKT 129

Query:    54 NVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNV 113
             N  +G+KRK++S N++ N +  E  + IQIP  LKKQL DD E+I    K+VKLPR+PNV
Sbjct:   130 NAAKGKKRKHESGNEKDN-VTAEKLMKIQIPASLKKQLTDDWEYIAQKDKVVKLPRSPNV 188

Query:   114 DDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSP 173
             D+IL KY ++++KKDG+V DS  EI+KG+R YFDKALP+MLLYK ER QY++S+  D SP
Sbjct:   189 DEILSKYLEFKTKKDGMVTDSVAEILKGIRSYFDKALPVMLLYKKERRQYQESIVDDTSP 248

Query:   174 SSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAE 233
             S+VYGAEHLLRLFVKLP+L  +  +EEET + +Q  L D LKF+QK+QSTF L   + ++
Sbjct:   249 STVYGAEHLLRLFVKLPDLFSYVNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPSAYDSD 308

Query:   234 DVETSANKQEDD 245
              V     K +DD
Sbjct:   309 KVSDGKGKGKDD 320

GO:0005634 "nucleus" evidence=ISM;IEA

DICTYBASE|DDB_G0283075 DDB_G0283075 "NuA4 histone H4 acetyltransferase complex subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 341 (125.1 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 78/202 (38%), Positives = 120/202 (59%)

Query:    31 TKKRDEDKNLKSGHALQMKPRSSNVGRGRKRK-NDSLNKETNGLQMENFVNIQIPPPLKK 89
             +K  + + N  + +       ++N     KRK NDS   +++  Q   F++I+IP  LK 
Sbjct:   172 SKSNNNNNNNNNNNNNNNNNNNNNNNNNNKRKRNDS---KSSHFQSTKFIDIEIPLSLKN 228

Query:    90 QLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKA 149
             +LVDD   I +   ++ LP++PNV DIL K  +   K     +    E++ G++ YF+KA
Sbjct:   229 KLVDDWNSINNEKSILSLPKSPNVKDILNKIIEENDK-----SSECKEVINGIKQYFNKA 283

Query:   150 LPIMLLYKSEREQYEDSMAADV--SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQ 207
             L  +LLYK ER QY+  +  +   S S +YGAEHLLRLFVKLP+LLV + +EE+T+T L+
Sbjct:   284 LGTLLLYKFERPQYDSILKTNPKKSMSDIYGAEHLLRLFVKLPQLLVISNLEEKTITQLK 343

Query:   208 HKLVDLLKFLQKHQSTFFLSRY 229
                  +L++L+K+ ST FL  Y
Sbjct:   344 DAFEIVLEYLEKNSSTLFLKEY 365

GO:0005634 "nucleus" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|D4AAF9 Morf4l1 "Mortality factor 4-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 78/215 (36%), Positives = 114/215 (53%)

Query:    29 VFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQMENFVNIQIPPPL 87
             V TKK  +     +G             + R R + ++ N+ET   ++E  V ++IP  L
Sbjct:   147 VKTKKNKQKVTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE--VKVKIPEEL 204

Query:    88 KKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STGEIVKGLRCY 145
             K  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  E+V G++ Y
Sbjct:   205 KPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEY 264

Query:   146 FDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETL 203
             F+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L +  ++E++L
Sbjct:   265 FNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSL 324

Query:   204 TLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
              LL + L D LK+L K+ +T F     SA D E +
Sbjct:   325 ALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 354

GO:0005634 "nucleus" evidence=IEA

RGD|2322736 LOC100360113 "mortality factor 4 like 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 78/215 (36%), Positives = 114/215 (53%)

Query:    29 VFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDSL-NKETNGLQMENFVNIQIPPPL 87
             V TKK  +     +G             + R R + ++ N+ET   ++E  V ++IP  L
Sbjct:   108 VKTKKNKQKVTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVE--VKVKIPEEL 165

Query:    88 KKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STGEIVKGLRCY 145
             K  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  E+V G++ Y
Sbjct:   166 KPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEY 225

Query:   146 FDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETL 203
             F+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L +  ++E++L
Sbjct:   226 FNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSL 285

Query:   204 TLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
              LL + L D LK+L K+ +T F     SA D E +
Sbjct:   286 ALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 315

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0016575 "histone deacetylation" evidence=ISO

GO:0016580 "Sin3 complex" evidence=ISO

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

UNIPROTKB|F1N4R2 MORF4L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 86/243 (35%), Positives = 129/243 (53%)

Query:     6 SWDEWVGVHRLMKDTEANRHRQPVFTK-----KRDEDKNLKSGHALQMKPRSSNVGRGRK 60
             +WDEWV   R++K  + N  +Q    K     K+++ K   +G             + R 
Sbjct:    52 NWDEWVPESRVLKYVDTNLQKQRELQKANQKTKKNKQKTPGNGDGGSTSETPQPPRKKRA 111

Query:    61 RKNDSL-NKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEK 119
             R + ++ N+ET   ++E  V ++IP  LK  LVDD + IT   +L  LP   NVD ILE 
Sbjct:   112 RVDPTVENEETFMSRVE--VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILED 169

Query:   120 YCDYRSKKDGLVAD--STGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSS 175
             Y +Y+  +        +  E+V G++ YF+  L   LLYK ER QY + +A   D   S 
Sbjct:   170 YANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQ 229

Query:   176 VYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDV 235
             VYGA HLLRLFV++  +L +  ++E++L LL + L D LK+L K+ +T F     SA D 
Sbjct:   230 VYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDY 284

Query:   236 ETS 238
             E +
Sbjct:   285 EVA 287

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|H0YLJ3 MORF4L1 "Mortality factor 4-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 78/220 (35%), Positives = 117/220 (53%)

Query:     6 SWDEWVGVHRLMKDTEANRHRQPVFTK-----KRDEDKNLKSGHALQMKPRSSNVGRGRK 60
             +WDEWV   R++K  + N  +Q    K     K+++ K   +G             + R 
Sbjct:    52 NWDEWVPESRVLKYVDTNLQKQRELQKANQKTKKNKQKTPGNGDGGSTSETPQPPRKKRA 111

Query:    61 RKNDSL-NKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEK 119
             R + ++ N+ET   ++E  V ++IP  LK  LVDD + IT   +L  LP   NVD ILE 
Sbjct:   112 RVDPTVENEETFMNRVE--VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILED 169

Query:   120 YCDYRSKKDGLVAD--STGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSS 175
             Y +Y+  +        +  E+V G++ YF+  L   LLYK ER QY + +A   D   S 
Sbjct:   170 YANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQ 229

Query:   176 VYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLK 215
             VYGA HLLRLFV++  +L +  ++E++L LL + L D LK
Sbjct:   230 VYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLK 269

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BFB6 E1BFB6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 82/243 (33%), Positives = 126/243 (51%)

Query:     6 SWDEWVGVHRLMKDTEANRHRQPVFTK-----KRDEDKNLKSGHALQMKPRSSNVGRGRK 60
             +W+EWV   R++K  + N  +Q    K     K+++ K   +G             + R 
Sbjct:    52 NWNEWVPESRVLKYVDTNLQKQRELQKANQKTKKNKQKTPGNGGGGSTSETPQPPRKKRA 111

Query:    61 RKNDSL-NKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEK 119
             R + ++ N+ET   ++E  V ++IP   K  LVDD + IT   +L  LP   NVD ILE 
Sbjct:   112 RVDPTVENEETFMSRVE--VKVKIPEEPKPWLVDDWDLITRQKQLFYLPAKKNVDSILED 169

Query:   120 YCDYRSKKDGLVAD--STGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSS 175
             Y +Y+  +        +  E+V G++ YF+  L   LLYK ER QY + +A   D   S 
Sbjct:   170 YANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQ 229

Query:   176 VYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDV 235
             VYGA HLLR  V++  +L +  ++E++L LL + L D LK+L K+ +T F     SA D 
Sbjct:   230 VYGAPHLLR--VRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDY 282

Query:   236 ETS 238
             E +
Sbjct:   283 EVA 285

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P9V5 MORF4L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 81/243 (33%), Positives = 124/243 (51%)

Query:     6 SWDEWVGVHRLMKDTEANRHRQPVFTK-----KRDEDKNLKSGHALQMKPRSSNVGRGRK 60
             +WDEWV   R++K  + N  +Q    K     K+++ K   +G             + R 
Sbjct:    52 NWDEWVPESRVLKYVDTNLQKQRELQKANQKTKKNKQKTPGNGDGGSTSETPPPPRKKRA 111

Query:    61 RKNDSL-NKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEK 119
             R + ++ N+ET   ++E  V ++IP  LK  LVDD + IT   +L  LP   NVD ILE 
Sbjct:   112 RVDPTVENEETFMNRVE--VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILED 169

Query:   120 YCDYRSKKDGLVAD--STGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSS 175
             Y +Y+  +        +  E+V G++ YF+  L   LLYK ER QY + +A   D   S 
Sbjct:   170 YANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQ 229

Query:   176 VYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDV 235
             VYGA H     V++  +L +  ++E++L LL + L D LK+L K+ +T F     SA D 
Sbjct:   230 VYGALHCFVYTVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDY 284

Query:   236 ETS 238
             E +
Sbjct:   285 EVA 287

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000050701 AN1976 [Emericella nidulans (taxid:162425)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 83/235 (35%), Positives = 127/235 (54%)

Query:    16 LMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNV-GRGRKRKNDS-LNKETNGL 73
             L ++ EA   ++   T  + +  +  S  A   + R ++V GRG KR  D+ + KE +  
Sbjct:    79 LRREAEAALRQKSTKTSLKKKGGSDHSS-ARGSEERQTSVPGRGTKRARDNDIEKEEHFY 137

Query:    74 QMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYC-DYRSKKDGLV- 131
                + V I +P  LK  LVDD E +T   ++V LP   +V+ IL+ Y  + R K+ G   
Sbjct:   138 TRPS-VRIVMPDNLKSLLVDDWENVTKNQQVVALPAKSSVNQILDDYLKEERPKRTGSSE 196

Query:   132 ADSTGEIVKGLRCYFDKALPIMLLYKSEREQYE------DSMAADVSPSSVYGAEHLLRL 185
              D   E+V G+R YFDK+L  +LLY+ EREQY       +S  AD  P  VYGAEHL RL
Sbjct:   197 VDVLEEVVMGIRDYFDKSLDKILLYRFEREQYRVLRKRWESETADKGPLDVYGAEHLTRL 256

Query:   186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSA--EDVETS 238
             F  +PEL+    ++ ++   L+ +L     +L K+ + +F +RY +A  E +E S
Sbjct:   257 FATMPELIAQTNMDLQSTNRLREELSKFTIWLSKNSNHYFATRYVTASNEYIEKS 311

GO:0071963 "establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0060195 "negative regulation of antisense RNA transcription" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0032221 "Rpd3S complex" evidence=IEA

GO:0033698 "Rpd3L complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.40.964.1 hypothetical protein (272 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam05712	191	pfam05712, MRG, MRG	2e-63

>gnl|CDD|218713 pfam05712, MRG, MRG

 Score =  196 bits (500), Expect = 2e-63
 Identities = 85/188 (45%), Positives = 106/188 (56%), Gaps = 12/188 (6%)

Query: 52  SSNVGRGRKRKNDSLNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTP 111
           SS   RG KRK  S +++ +  + E  V I IP  LKK LVDD E+IT   KLV LP   
Sbjct: 1   SSAPARGTKRKRSSADEKEDNFRSEPRVRINIPDELKKLLVDDWEYITKDKKLVALPARV 60

Query: 112 NVDDILEKYCDYRSKKDGLVADSTG-----EIVKGLRCYFDKALPIMLLYKSEREQYED- 165
            V  ILE Y   R+ K      S       E+V GLR YF+KAL  +LLYK ER QY + 
Sbjct: 61  PVVTILEDYVKERAIKQDSSTSSARMELLEEVVDGLRIYFNKALGDLLLYKFERLQYLEL 120

Query: 166 ------SMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQK 219
                 S  +D  PS +YGAEHLLRLFVKLPELL    ++E++L  L   L D L+FL K
Sbjct: 121 LKDNLLSAESDKRPSDIYGAEHLLRLFVKLPELLSQTNMDEQSLNRLLKHLEDFLRFLAK 180

Query: 220 HQSTFFLS 227
           +   +F+ 
Sbjct: 181 NAEEYFVK 188

This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation. It contains 2 chromo domains and a leucine zipper motif. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PF05712	194	MRG: MRG; InterPro: IPR008676 This family consists	100.0
KOG3001	391	consensus Dosage compensation regulatory complex/h	100.0
PLN00104	450	MYST -like histone acetyltransferase; Provisional	92.38

>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3))

Probab=100.00  E-value=6.5e-50  Score=343.35  Aligned_cols=159  Identities=48%  Similarity=0.752  Sum_probs=126.9

Q ss_pred             cccCCCcceEEeCChhHHHHHHHHHHhhhhCCceeeCCCCCCHHHHHHHHHHhhcccC--Cch-----hhhHHHHHHHHH
Q 025994           71 NGLQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD--GLV-----ADSTGEIVKGLR  143 (245)
Q Consensus        71 ~~~~~~~~i~i~iP~~Lk~~LvdD~e~Itk~~~L~~LP~~~tV~~IL~~y~~~~~~~~--~~~-----~~~~~e~~~Gl~  143 (245)
                      ++....++++|+||..||.+|||||++|+++++|++|||++||++||++|+++.....  ...     ...+.|+++||+
T Consensus        16 ~~~~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~~~~~~~~~e~~~Gl~   95 (194)
T PF05712_consen   16 DDSEEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESAEQERDLLKEVADGLR   95 (194)
T ss_dssp             --------------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---THH--HHHHHHHHHHH
T ss_pred             cccccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHH
Confidence            3445668899999999999999999999999999999999999999999999987432  111     146899999999


Q ss_pred             HHHhhhcCccCCChhhHhhHHHhhhcC------------CCCCcccchHHHHHHHhhhHHHhhhccCCHHHHHHHHHHHH
Q 025994          144 CYFDKALPIMLLYKSEREQYEDSMAAD------------VSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLV  211 (245)
Q Consensus       144 ~yFn~~L~~~LLY~~ER~Qy~~~~~~~------------~~~S~~YG~~HLLRL~vkLP~ll~~t~~d~~~~~~l~~~l~  211 (245)
                      .|||++||.+|||++||+||.+++...            .+||++||++|||||||+||+||+.++|++.+++.|..+++
T Consensus        96 ~yFn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~~~~~~~~~l~~~l~  175 (194)
T PF05712_consen   96 DYFNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTNMDEESINILLEHLQ  175 (194)
T ss_dssp             HHHHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCGGCHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999998653            49999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHchhhhcc-ccC
Q 025994          212 DLLKFLQKHQSTFFL-SRY  229 (245)
Q Consensus       212 ~fl~fL~~n~~~~f~-~~Y  229 (245)
                      +||+||++|.++||. ++|
T Consensus       176 ~fl~fL~~n~~~~f~~~~y  194 (194)
T PF05712_consen  176 DFLKFLEKNSEEYFSEEDY  194 (194)
T ss_dssp             HHHHHHHHTHHHHS-GGGE
T ss_pred             HHHHHHHHHHHHhCCcccC
Confidence            999999999999999 666

It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.

>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.1e-38  Score=297.61  Aligned_cols=167  Identities=41%  Similarity=0.628  Sum_probs=148.3

Q ss_pred             CcceEEeCChhHHHHHHHHHHhhhhCCceeeCCCCCCHHHHHHHHHHhhcccC--Cc-hhhhHHHHHHHHHHHHhhhcCc
Q 025994           76 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD--GL-VADSTGEIVKGLRCYFDKALPI  152 (245)
Q Consensus        76 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~L~~LP~~~tV~~IL~~y~~~~~~~~--~~-~~~~~~e~~~Gl~~yFn~~L~~  152 (245)
                      .+++.+.||..|+..|+|||+.+++..+++.+|+..+|+.|+..|........  +. ....+.+...|++.|||.+||.
T Consensus       217 ~~~v~~~l~~~~~~~l~dd~~~vt~~~~~~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yfn~~lG~  296 (391)
T KOG3001|consen  217 TVEVKLSLPQELKRSLVDDWDSVTEVDSLAELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYFNGQLGV  296 (391)
T ss_pred             cccccccCchhhcccccchhhhhhhhhhhhcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeeecccchh
Confidence            45789999999999999999999999999999999999999999987665322  11 1223345559999999999999


Q ss_pred             cCCChhhHhhHHHhhhcCC---CCCcccchHHHHHHHhhhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHchhhhcc-cc
Q 025994          153 MLLYKSEREQYEDSMAADV---SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL-SR  228 (245)
Q Consensus       153 ~LLY~~ER~Qy~~~~~~~~---~~S~~YG~~HLLRL~vkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~~~f~-~~  228 (245)
                      +|||++||.||.+++.+..   +||++|||+|||||||+||+||.++.|+.++++.|..++++|++||.+|...||. ++
T Consensus       297 ~llyk~Er~qy~~~~~~~~~Ds~~s~vyGa~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk~L~~~~~~~f~~s~  376 (391)
T KOG3001|consen  297 MLLYKFERLQYAEVVAKYPKDSPPSNVYGAEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLKYLRKNSASFFSSSD  376 (391)
T ss_pred             hhhhhhhhHHHHHHHhcCCCCCCcccchhHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            9999999999999986433   4999999999999999999999999999999999999999999999999977887 99


Q ss_pred             CCCCCHHHHHhccc
Q 025994          229 YHSAEDVETSANKQ  242 (245)
Q Consensus       229 Y~~~~~~Y~~~a~~  242 (245)
                      |.+++++|.+.+.|
T Consensus       377 y~~~~~e~~~~~~~  390 (391)
T KOG3001|consen  377 YSNASPEYSSSSLP  390 (391)
T ss_pred             hhhhchhhhhcccC
Confidence            99999999998765

>PLN00104 MYST -like histone acetyltransferase; Provisional

Probab=92.38  E-value=0.038  Score=53.29  Aligned_cols=16  Identities=31%  Similarity=0.497  Sum_probs=15.2

Q ss_pred             CCCCCcccccccCCCC
Q 025994            2 REAGSWDEWVGVHRLM   17 (245)
Q Consensus         2 ~~~~~WDeWV~e~r~l   17 (245)
                      |||++|||||+.+||-
T Consensus        97 g~nrRlDEWV~~~rLd  112 (450)
T PLN00104         97 EFNRRLDEWVKLEQLD  112 (450)
T ss_pred             cCCccHhhccCHhhcc
Confidence            8999999999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2lkm_B	172	Structural Basis For Molecular Interactions Involvi		7e-26
2aql_A	173	Crystal Structure Of The Mrg15 Mrg Domain Length =		2e-25
2f5j_A	181	Crystal Structure Of Mrg Domain From Human Mrg15 Le		3e-25
2y0n_A	211	Crystal Structure Of The Complex Between Dosage Com		1e-20

>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg Domains: Implications In Chromatin Biology Length = 172

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 79  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 136
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +YR  +        +  
Sbjct: 5   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGNTDNKEYAVN 64
Query: 137 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 194
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 65  EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 124
Query: 195 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 125 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 163

>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain Length = 173

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 79  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 136
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65
Query: 137 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 194
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 66  EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 125
Query: 195 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 126 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164

>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15 Length = 181

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 79  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 136
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65
Query: 137 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 194
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 66  EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 125
Query: 195 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
           +  ++E++L LL + L D LK+L K+ +T F     SA D E +
Sbjct: 126 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164

>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage Compensation Factors Msl1 And Msl3 Length = 211

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 89/188 (47%), Gaps = 38/188 (20%)
Query: 76  ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA--- 132
           E  + I+IP  LKKQL DDC +I    +LVKLP   N+  ILE Y  + +      A   
Sbjct: 5   ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64
Query: 133 -----------------------DSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA 169
                                  D   E+V GLR  FD  LP++LLY  E+ QY+   ++
Sbjct: 65  PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124
Query: 170 --DVSPSS----------VYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFL 217
             D+ P++          +YGA+HLLRLFVKLPE+L      E+ L  L       L+FL
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFL 184
Query: 218 QKHQSTFF 225
            ++   FF
Sbjct: 185 AEYHDDFF 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
2f5j_A	181	Mortality factor 4-like protein 1; MRG fold, mainl	3e-52
2y0n_A	211	MALE-specific lethal 3 homolog; transcription, chr	1e-44

>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B Length = 181

 Score =  166 bits (422), Expect = 3e-52
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 5/159 (3%)

Query: 79  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA--DSTG 136
           V ++IP  LK  LVDD + IT   +L  LP   NVD ILE Y +Y+  +        +  
Sbjct: 6   VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65

Query: 137 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 194
           E+V G++ YF+  L   LLYK ER QY + +A   D   S VYGA HLLRLFV++  +L 
Sbjct: 66  EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 125

Query: 195 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFF-LSRYHSA 232
           +  ++E++L LL + L D LK+L K+ +T F  S Y  A
Sbjct: 126 YTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVA 164

>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens} Length = 211

 Score =  148 bits (374), Expect = 1e-44
 Identities = 65/196 (33%), Positives = 85/196 (43%), Gaps = 38/196 (19%)

Query: 79  VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA------ 132
           + I+IP  LKKQL DDC +I    +LVKLP   N+  ILE Y  + +      A      
Sbjct: 8   ITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRH 67

Query: 133 --------------------DSTGEIVKGLRCYFDKALPIMLLYKSEREQYED------- 165
                               D   E+V GLR  FD  LP++LLY  E+ QY+        
Sbjct: 68  HHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYD 127

Query: 166 -----SMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220
                       PS +YGA+HLLRLFVKLPE+L      E+ L  L       L+FL ++
Sbjct: 128 IPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEY 187

Query: 221 QSTFFLSRYHSAEDVE 236
              FF    + A    
Sbjct: 188 HDDFFPESAYVAACEA 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2f5j_A	181	Mortality factor 4-like protein 1; MRG fold, mainl	100.0
2y0n_A	211	MALE-specific lethal 3 homolog; transcription, chr	100.0
3oa6_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	99.47
3m9q_A	101	Protein MALE-specific lethal-3; chromodomain, MSL3	99.45
3m9p_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	99.41
3e9g_A	130	Chromatin modification-related protein EAF3; chrom	99.41
2f5k_A	102	MORF-related gene 15 isoform 1; beta barrel, gene	99.34
2k3y_A	136	Chromatin modification-related protein EAF3; dimet	99.34
2lrq_A	85	Protein MRG15, NUA4 complex subunit EAF3 homolog;	98.97
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	98.45
2bud_A	92	Males-absent on the first protein; transferase, MO	97.98
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	97.38
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	97.29
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	97.29
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	97.28
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	94.24
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	83.47

>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B

Probab=100.00  E-value=4.4e-56  Score=376.63  Aligned_cols=168  Identities=40%  Similarity=0.610  Sum_probs=148.7

Q ss_pred             CcceEEeCChhHHHHHHHHHHhhhhCCceeeCCCCCCHHHHHHHHHHhhcccCC--chhhhHHHHHHHHHHHHhhhcCcc
Q 025994           76 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDG--LVADSTGEIVKGLRCYFDKALPIM  153 (245)
Q Consensus        76 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~L~~LP~~~tV~~IL~~y~~~~~~~~~--~~~~~~~e~~~Gl~~yFn~~L~~~  153 (245)
                      +++++|.||+.||.+|||||++||++++|++|||++||++||++|+++......  .....+.|+++||+.|||++||.+
T Consensus         3 ~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~~   82 (181)
T 2f5j_A            3 RVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQ   82 (181)
T ss_dssp             ---CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHcccc
Confidence            467899999999999999999999999999999999999999999999876442  123478999999999999999999


Q ss_pred             CCChhhHhhHHHhhhc--CCCCCcccchHHHHHHHhhhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCC
Q 025994          154 LLYKSEREQYEDSMAA--DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRYH  230 (245)
Q Consensus       154 LLY~~ER~Qy~~~~~~--~~~~S~~YG~~HLLRL~vkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~~~f~-~~Y~  230 (245)
                      |||++||+||.++++.  +.+||++|||+|||||||+||+||+.|+||+++++.|+.++.+||+||++|.++||. ++|+
T Consensus        83 LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~  162 (181)
T 2f5j_A           83 LLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYE  162 (181)
T ss_dssp             SCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEE
T ss_pred             cCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhcC
Confidence            9999999999999863  458999999999999999999999999999999999999999999999999999995 9999


Q ss_pred             CCCHHHHHhcccC
Q 025994          231 SAEDVETSANKQE  243 (245)
Q Consensus       231 ~~~~~Y~~~a~~~  243 (245)
                      +++|+|+++|.+.
T Consensus       163 ~~~~eY~~~~~~~  175 (181)
T 2f5j_A          163 VAPPEYHRKAVLE  175 (181)
T ss_dssp             ECCHHHHC-----
T ss_pred             CCCHHHHHHHhhh
Confidence            9999999999875

>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-53  Score=366.82  Aligned_cols=164  Identities=41%  Similarity=0.627  Sum_probs=142.6

Q ss_pred             CcceEEeCChhHHHHHHHHHHhhhhCCceeeCCCCCCHHHHHHHHHHhhcccC------------C--------------
Q 025994           76 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD------------G--------------  129 (245)
Q Consensus        76 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~L~~LP~~~tV~~IL~~y~~~~~~~~------------~--------------  129 (245)
                      +++|+|.||+.||.+|||||++||++++|++|||++||++||++|+++.....            +              
T Consensus         5 ~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~   84 (211)
T 2y0n_A            5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAE   84 (211)
T ss_dssp             --CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CT
T ss_pred             CceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchh
Confidence            46789999999999999999999999999999999999999999998865210            0              


Q ss_pred             chhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhc------------CCCCCcccchHHHHHHHhhhHHHhhhcc
Q 025994          130 LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA------------DVSPSSVYGAEHLLRLFVKLPELLVHAK  197 (245)
Q Consensus       130 ~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~~------------~~~~S~~YG~~HLLRL~vkLP~ll~~t~  197 (245)
                      ...+.++|+++||+.|||++||.+|||++||+||.++++.            +.+||++|||+|||||||+||+||+.|+
T Consensus        85 ~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~  164 (211)
T 2y0n_A           85 KNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMS  164 (211)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCC
Confidence            1234689999999999999999999999999999999842            3589999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCCCCCHHHHHh
Q 025994          198 IEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRYHSAEDVETSA  239 (245)
Q Consensus       198 ~d~~~~~~l~~~l~~fl~fL~~n~~~~f~-~~Y~~~~~~Y~~~  239 (245)
                      ||+++++.|+.++++||+||++|.++||. ++|++++++|++.
T Consensus       165 ~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~  207 (211)
T 2y0n_A          165 FSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYST  207 (211)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC-------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhh
Confidence            99999999999999999999999999996 8999998888765

>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*

Probab=99.47  E-value=6.2e-15  Score=114.40  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=33.5

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDE   36 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~   36 (245)
                      .|||++|||||+++||||+||||+++|++|++++++
T Consensus        66 ~GWn~~WDEWV~~drllk~neeN~~~qk~L~~~~~~  101 (110)
T 3oa6_A           66 NGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVA  101 (110)
T ss_dssp             TTSCGGGCEEEEGGGEEECCHHHHHHHHHHHHHHHC
T ss_pred             CCcCcchhhccChhhhhcCCHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999999999988744

>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0

Probab=99.45  E-value=1.3e-14  Score=111.27  Aligned_cols=35  Identities=31%  Similarity=0.297  Sum_probs=33.1

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRD   35 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~   35 (245)
                      .|||++||||||+|||+|+|+||+++|++|+++++
T Consensus        66 ~GWn~rwDEWV~edRilk~~eeN~~~q~~L~~~~~  100 (101)
T 3m9q_A           66 QGWRPSYDRAVRATVLLKDTEENRQLQRELAEAAK  100 (101)
T ss_dssp             TTSCGGGCEEECGGGEEECCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCceeecCHHHcccCCHHHHHHHHHHHHHcc
Confidence            49999999999999999999999999999998874

>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*

Probab=99.41  E-value=4.2e-14  Score=111.96  Aligned_cols=39  Identities=31%  Similarity=0.498  Sum_probs=35.5

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhhhhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKN   39 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~~k~   39 (245)
                      .|||++|||||+++||||+|++|+++|++|+++++.+++
T Consensus        82 ~GWn~~WDEWV~e~rvlk~~eeN~~lqk~L~~~a~~~~~  120 (130)
T 3e9g_A           82 QGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAKEAKK  120 (130)
T ss_dssp             TTSCGGGCEEEETTTEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhhccCHhhhhccCHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999999999999965443

>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A

Probab=99.34  E-value=1.7e-13  Score=105.33  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=34.5

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDED   37 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~~   37 (245)
                      .|||++|||||+++||+|+|+||+++|++|+++++.+
T Consensus        59 ~GwNkR~DEWV~~~Rl~k~t~en~~~q~~L~~~~~~~   95 (102)
T 2f5k_A           59 SGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQ   95 (102)
T ss_dssp             TTSCGGGCEEEEGGGEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCceeeccHhhcccCCHHHHHHHHHHHHHHHhh
Confidence            3899999999999999999999999999999998654

>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=2.5e-13  Score=109.13  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=33.1

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRD   35 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~   35 (245)
                      .|||++|||||+++|||++|+||+++|++|+++++
T Consensus        84 ~GWn~rwDEWV~~dRil~~~eeN~~~qKeL~~kak  118 (136)
T 2k3y_A           84 QGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAG  118 (136)
T ss_dssp             TTSCGGGCEEEETTTEEESCHHHHHHHHHHHHHSC
T ss_pred             CCcCCcceeeecHhhhhhCCHhHhHHHHHHHHHHH
Confidence            38999999999999999999999999999998883

>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}

Probab=98.97  E-value=2e-13  Score=101.81  Aligned_cols=35  Identities=26%  Similarity=0.539  Sum_probs=32.9

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRD   35 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~   35 (245)
                      .|||++|||||+++||+|+|+||+++|++|+++++
T Consensus        49 ~GwNkR~DEWV~~~Rl~k~t~en~~~q~~l~~~~~   83 (85)
T 2lrq_A           49 AGWSKNWDEWVPENRVLKYNDDNVKRRQELARQCG   83 (85)
Confidence            38999999999999999999999999999998873

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.8e-08  Score=73.37  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHR   26 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~   26 (245)
                      .|||++|||||+++||++++++|++-
T Consensus        46 ~gwnkr~DEWV~~~ri~~~~~~~~~~   71 (76)
T 2lcc_A           46 YGWNVRYDEWVKADRIIWPLDKGLEH   71 (76)
T ss_dssp             TTSCCSSCEEEEGGGEECSSCSSCCC
T ss_pred             CCcCCCceEecChhhccccccchhhh
Confidence            49999999999999999999999863

>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3

Probab=97.98  E-value=1.3e-06  Score=65.58  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.9

Q ss_pred             CCCCCCcccccccCCCCCCCHH
Q 025994            1 MREAGSWDEWVGVHRLMKDTEA   22 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~ee   22 (245)
                      .|||++|||||+++||++.+++
T Consensus        55 ~g~NkRlDEWV~~~RL~~~~~~   76 (92)
T 2bud_A           55 VGLNRRLDGWVGRHRISDNADD   76 (92)
T ss_dssp             SSSCTTTCEEEETTTEESCHHH
T ss_pred             CCcccccccccCHHHhchhccc
Confidence            3899999999999999998765

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=97.38  E-value=4.1e-05  Score=57.67  Aligned_cols=17  Identities=24%  Similarity=0.532  Sum_probs=15.7

Q ss_pred             CCCCCCcccccccCCCC
Q 025994            1 MREAGSWDEWVGVHRLM   17 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~l   17 (245)
                      .|||++|||||+++||.
T Consensus        62 ~g~NkRlDEWV~~~RI~   78 (94)
T 2rnz_A           62 VNYNKRLDEWITTDRIN   78 (94)
T ss_dssp             TTSCSTTCEEEETTTBC
T ss_pred             CCcCcccccccCHHHcc
Confidence            48999999999999995

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.29  E-value=6.8e-05  Score=55.68  Aligned_cols=17  Identities=35%  Similarity=0.491  Sum_probs=15.8

Q ss_pred             CCCCCCcccccccCCCC
Q 025994            1 MREAGSWDEWVGVHRLM   17 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~l   17 (245)
                      .|||++|||||+.+||.
T Consensus        51 ~g~NkRlDEWV~~~rl~   67 (87)
T 2eko_A           51 IDFNRRLDEWVTHERLD   67 (87)
T ss_dssp             CSSCSCCCEEECTTTBC
T ss_pred             CCCCcccccccCHhHcc
Confidence            48999999999999995

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=97.29  E-value=4.7e-05  Score=57.15  Aligned_cols=17  Identities=24%  Similarity=0.532  Sum_probs=15.6

Q ss_pred             CCCCCCcccccccCCCC
Q 025994            1 MREAGSWDEWVGVHRLM   17 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~l   17 (245)
                      .|||++|||||+.+||.
T Consensus        60 ~g~NkRlDEWV~~~rl~   76 (92)
T 2ro0_A           60 VNYNKRLDEWITTDRIN   76 (92)
T ss_dssp             TTSCTTSCEEEEGGGEE
T ss_pred             CCcCcccccccCHhHcc
Confidence            48999999999999994

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=97.28  E-value=6.5e-05  Score=60.00  Aligned_cols=18  Identities=33%  Similarity=0.481  Sum_probs=16.4

Q ss_pred             CCCCCCcccccccCCCCC
Q 025994            1 MREAGSWDEWVGVHRLMK   18 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk   18 (245)
                      .|||++|||||+++||.-
T Consensus        52 ~gwNkR~DEWV~~~ri~~   69 (133)
T 1wgs_A           52 VGFNRRLDEWVDKNRLAL   69 (133)
T ss_dssp             TTTCSSCCEEECTTTSCC
T ss_pred             cCcCCCceeecChhhccc
Confidence            489999999999999964

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=94.24  E-value=0.0071  Score=44.73  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=18.7

Q ss_pred             CCCCCCcccccccC--CCCCCCHHH
Q 025994            1 MREAGSWDEWVGVH--RLMKDTEAN   23 (245)
Q Consensus         1 ~~~~~~WDeWV~e~--r~lk~~eeN   23 (245)
                      .||+++|||||+.+  ||++..-.+
T Consensus        55 dGW~~~yDeWv~~dS~~I~P~g~~~   79 (88)
T 2eqm_A           55 ERWSHRYDEWIYWDSNRLRPLERPA   79 (88)
T ss_dssp             SSSTTTEEEEEETTSCCEECCCCCC
T ss_pred             CCCCCcccEEeeCCCCcEecccccc
Confidence            39999999999987  888765433

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=83.47  E-value=11  Score=27.39  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=55.2

Q ss_pred             CCCCCHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCC-CCCcccchHHHHHHH
Q 025994          108 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADV-SPSSVYGAEHLLRLF  186 (245)
Q Consensus       108 P~~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~~~~-~~S~~YG~~HLLRL~  186 (245)
                      |...|+.+.+++|+.+.. .+ .....+..-...|+.|++.+-..                 +. .+++ -...++-+.+
T Consensus         4 ~~~~t~~~~~~~fl~~l~-~~-~s~~Ti~~Y~~~l~~f~~~l~~~-----------------~~~~l~~-it~~~i~~y~   63 (117)
T 3nrw_A            4 RPSLSPREARDRYLAHRQ-TD-AADASIKSFRYRLKHFVEWAEER-----------------DITAMRE-LTGWKLDEYE   63 (117)
T ss_dssp             CCCCCHHHHHHHHHHHHT-TT-SCHHHHHHHHHHHHHHHHHHHHT-----------------TCCSGGG-CCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHHHc-----------------CCCChHH-CCHHHHHHHH
Confidence            677899999999999886 22 22223344445555555432110                 01 1111 2344555555


Q ss_pred             hhhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHc
Q 025994          187 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH  220 (245)
Q Consensus       187 vkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n  220 (245)
                      ..|    ....+.+.+++.....|..|++|+.+.
T Consensus        64 ~~l----~~~~~s~~Ti~~~ls~lr~f~~~l~~~   93 (117)
T 3nrw_A           64 TFR----RGSDVSPATLNGEMQTLKNWLEYLARI   93 (117)
T ss_dssp             HHH----HTSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH----HhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            443    224688999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1wgsa_	133	b.34.13.3 (A:) Probable histone acetyltransferase	0.002

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 6   SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHALQMKPRSSNVGRGRKRKNDS 65
             DEWV  +RL          Q    K  ++  +  +            + R +KRK+D 
Sbjct: 57  RLDEWVDKNRLALTKTVKDAVQ----KNSEKYLSELAEQP------ERKITRNQKRKHDE 106

Query: 66  LNK 68
           +N 
Sbjct: 107 INH 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2f5ka1	83	Mortality factor 4-like protein 1, MRG15 {Human (H	99.34
d2buda1	88	Putative histone acetyltransferase MOF {Fruit fly	98.02
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	97.97

>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Mortality factor 4-like protein 1, MRG15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.4e-14  Score=101.48  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=34.1

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhhh
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDED   37 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~~   37 (245)
                      .|||++|||||+++|||++|+||+++|++|.+++++.
T Consensus        42 ~GWn~~~DeWv~~~ril~~~~en~~~q~~L~~~~~~~   78 (83)
T d2f5ka1          42 SGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQ   78 (83)
T ss_dssp             TTSCGGGCEEEEGGGEEESSHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccccccChhhcccCCHHHHHHHHHHHHHHHhh
Confidence            4999999999999999999999999999999888543

>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Putative histone acetyltransferase MOF
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.02  E-value=5.1e-07  Score=65.31  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             CCCCCCcccccccCCCCCCCHHHH
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANR   24 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~   24 (245)
                      .|||++|||||+.+||++.++|..
T Consensus        51 ~g~n~r~DEWV~~~ri~~~~de~~   74 (88)
T d2buda1          51 VGLNRRLDGWVGRHRISDNADDLG   74 (88)
T ss_dssp             SSSCTTTCEEEETTTEESCHHHHH
T ss_pred             cCccchhhhccCHhHhhhhhhhcC
Confidence            399999999999999999998854

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.2e-06  Score=68.14  Aligned_cols=30  Identities=23%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             CCCCCCcccccccCCCCCCCHHHHhhchhH
Q 025994            1 MREAGSWDEWVGVHRLMKDTEANRHRQPVF   30 (245)
Q Consensus         1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L   30 (245)
                      .|||++|||||+.+||...++++...|+.+
T Consensus        52 ~g~n~r~DEWV~~~ri~~~~~~~~~~~k~~   81 (133)
T d1wgsa_          52 VGFNRRLDEWVDKNRLALTKTVKDAVQKNS   81 (133)
T ss_dssp             TTTCSSCCEEECTTTSCCTTTSSSCCSSCC
T ss_pred             cCCccccceecCHHHccccccccchhcccc
Confidence            499999999999999998887776665543