Citrus Sinensis ID: 025996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MDSNNSGDRSERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGLESLANHNNT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEccccccccccEEEEEEEEEccccccccccccHHHHHHHHccHHHHccccccEEEEEEEccEEEEEEEEEEEcccccEEEEcHHHHHHHHHHHHHcccccccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHccccccccccHHHcccccccccccccccccccEEEEEEEEccccccEEEEEEccHHccccccEEEccccccccccccHHHHHHHHHHHHHcccHccEEEEEEcccccccccEEEEEEEEEEccccccEccccHHHHHHHHcccHHHHccccccEEEEEEEcccEEEEEEEEcccccccEEEEHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mdsnnsgdrsERLETLVQRLRLYNerhqnpvtereavdsqdsysvAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRssnlsshsgevalpggkreendadDAGTALREAKeeigldpslvnVVTILdpiftkngiivvpvigilpdrnsfipapntaevdaiFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVvhqcppafqerrpkFWSGLESLANHNNT
Flexible Loop (DISEMBL)
mdsnnsgdrserLETLVQRLRLynerhqnpvtereavdsqdsySVAVSSTKKRAAVLVCLFEGNDGDLRVFLTkrssnlsshsgevalpggkreenDADDAGTALREAkeeigldpslvNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGLEslanhnnt
Low Complexity Region (SEG)
MDSNNSGDRSERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNgiivvpvigiLPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGLESLANHNNT
Disordered region (IsUnstruct)
***************************************************KRAAVLVCLFEGNDGDLRVFLT**************************************IGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFW************
Disordered Region (DISOPRED)
******************RLRL*****************************KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWS***********
Disordered Region (DISEMBL)
************LETLVQRLRLYNERHQNP********************KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGLESLANHNNT
Disordered Region (DISPRO)
************LETLVQRLRLYNE****************SYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGLESLAN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSNNSGDRSERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGLESLANHNNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q8GYB1	285	Nudix hydrolase 15, mitoc	yes	no	0.902	0.775	0.577	4e-72
O22951	302	Nudix hydrolase 22, chlor	no	no	0.897	0.728	0.570	8e-69
Q8LET2	222	Nudix hydrolase 11 OS=Ara	no	no	0.746	0.824	0.617	2e-62
Q99P30	236	Peroxisomal coenzyme A di	yes	no	0.710	0.737	0.379	1e-24
P0C024	238	Peroxisomal coenzyme A di	yes	no	0.661	0.680	0.373	2e-24
A7MKE8	192	Uncharacterized Nudix hyd	yes	no	0.648	0.828	0.327	4e-19
A4WBH1	192	Uncharacterized Nudix hyd	yes	no	0.636	0.812	0.322	5e-19
Q7N3M0	187	Uncharacterized Nudix hyd	yes	no	0.669	0.877	0.343	9e-19
B1JP41	199	Uncharacterized Nudix hyd	yes	no	0.697	0.859	0.333	2e-18
Q66BW8	199	Uncharacterized Nudix hyd	yes	no	0.697	0.859	0.333	2e-18

>sp|Q8GYB1|NUD15_ARATH Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2

 Score =  271 bits (692), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 167/239 (69%), Gaps = 18/239 (7%)

Query: 12  RLETLVQRLRLYNERHQNPVTEREAVDS-QDSYSVAVSST-----------------KKR 53
           RL  L Q+LR Y     +   + E + + Q++    VS                    KR
Sbjct: 42  RLAALAQQLRQYKPPPSSSFDDSEEMQTDQETAGKVVSQVGFQESIAPLSKDPDRFKPKR 101

Query: 54  AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIG 113
           AAVL+CLFEG+DGDLRV LTKRSS LS+HSGEV+LPGGK EE+D DD  TA REA+EEIG
Sbjct: 102 AAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREAEEEIG 161

Query: 114 LDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173
           LDPSLV+VVT L+P  +K+ + V+PVIGIL D+N F P PN  EV+A+FDAPLEMFLKDE
Sbjct: 162 LDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFLKDE 221

Query: 174 NRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKF 232
           NRR+EEREWMG KYL+H+FDY      Y+IW LTAGILI  ASV ++ PPAF E+ PKF
Sbjct: 222 NRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKF 280

Coenzyme A diphosphatase which mediates the cleavage of oxidized CoA. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|O22951|NUD22_ARATH Nudix hydrolase 22, chloroplastic OS=Arabidopsis thaliana GN=NUDT22 PE=2 SV=2

 Score =  259 bits (663), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 134/235 (57%), Positives = 167/235 (71%), Gaps = 15/235 (6%)

Query: 10  SERLETLVQRLRLYNERHQNPVTEREA--------------VDSQDSYSVAVSSTKKRAA 55
           S RL  L Q+LR+Y     +   ERE               V  Q+S +  V    K+AA
Sbjct: 19  SSRLLALAQQLRVYKPPLSSSFDEREELLAYKESTRKSITHVGFQESMA-PVRFRPKKAA 77

Query: 56  VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLD 115
           VL+CLFEG+DGDLRV LTKRSS LS+HSGEV+LPGGK EE+D DD  TA REA+EEIGLD
Sbjct: 78  VLICLFEGDDGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREAEEEIGLD 137

Query: 116 PSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENR 175
           PSLV+VV  L+P  +++ + V+PV+GIL DR +F P PN AEV+A+ DAP EMFLKDENR
Sbjct: 138 PSLVDVVAFLEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEMFLKDENR 197

Query: 176 RAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRP 230
           R+EE +WMG K+L+HFFDY+   + YVIW LTA ILI  A+VV+Q PPAF E++P
Sbjct: 198 RSEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKP 252

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8LET2|NUD11_ARATH Nudix hydrolase 11 OS=Arabidopsis thaliana GN=NUDT11 PE=1 SV=2

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 142/188 (75%), Gaps = 5/188 (2%)

Query: 52  KRAAVLVCLFEGNDGD---LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREA 108
           K +AVLVCL++    D   LRV LTKRS+ LSSH GEVALPGGKR++ D DD  TALREA
Sbjct: 32  KSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIATALREA 91

Query: 109 KEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEM 168
           +EEIGLDPSLV ++++L+P   K G+ V PVIG L D+ +F   PN AEV+ IFD PLEM
Sbjct: 92  REEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFDVPLEM 151

Query: 169 FLKDENRRAEEREWMGYKYLLHFFDYEAEGNK--YVIWALTAGILINVASVVHQCPPAFQ 226
           FLKD NRRAEERE  G +YLL +FDY +E  +  ++IWALTAGILI VAS+V+Q  P FQ
Sbjct: 152 FLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQRLPEFQ 211

Query: 227 ERRPKFWS 234
           ER+P FW+
Sbjct: 212 ERKPSFWN 219

Coenzyme A diphosphatase which mediates the cleavage of CoA into 3',5'-ADP from CoA and 4'-phosphopantetheine. Can use malonyl-CoA, hexanoyl-CoA, lauroyl-CoA, myristoyl-CoA and palmitoyl-CoA as substrates, but not isobutyryl-CoA or propionyl-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q99P30|NUDT7_MOUSE Peroxisomal coenzyme A diphosphatase NUDT7 OS=Mus musculus GN=Nudt7 PE=1 SV=2

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 97/179 (54%), Gaps = 5/179 (2%)

Query: 50  TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAK 109
           +  + +VLV L     G L +  T RS  L    GEV  PGGKR+  D DD  TALREA+
Sbjct: 36  SSNKFSVLVPLL-ARGGKLYLMFTVRSDKLKREPGEVCFPGGKRDPVDTDDTATALREAQ 94

Query: 110 EEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMF 169
           EE+GL P  V VV+ L P    N  +V PV+G L D N F   PN  EV  +F  PL+ F
Sbjct: 95  EEVGLHPHQVEVVSHLVPYVFDNDALVTPVVGFL-DHN-FQAQPNADEVKEVFFVPLDYF 152

Query: 170 LKDENRRAEEREWMGYKYLLHFFDYE--AEGNKYVIWALTAGILINVASVVHQCPPAFQ 226
           L  +    ++    G  +++H F+Y+    G  Y+I  +T+ + + VA ++ +  PAF+
Sbjct: 153 LHPQVYYQKQITQSGRDFIMHCFEYKDPETGVNYLIQGMTSKLAVLVALIILEQSPAFK 211

Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'-phosphopantetheine. Has no activity toward NDP-sugars, CDP-alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P0C024|NUDT7_HUMAN Peroxisomal coenzyme A diphosphatase NUDT7 OS=Homo sapiens GN=NUDT7 PE=2 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 4/166 (2%)

Query: 63  GNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVV 122
             +G L +  T RS  L    GEV  PGGKR+  D DDA TALREA+EE+GL P  V VV
Sbjct: 48  AKEGKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVV 107

Query: 123 TILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREW 182
             L P       ++ P +G++ D N F   PN AEV  +F  PL  FL  +         
Sbjct: 108 CCLVPCLIDTDTLITPFVGLI-DHN-FQAQPNPAEVKDVFLVPLAYFLHPQVHDQHYVTR 165

Query: 183 MGYKYLLHFFDYE--AEGNKYVIWALTAGILINVASVVHQCPPAFQ 226
           +G++++ H F+Y    +G  Y I  +TA + + VA ++ +  P F+
Sbjct: 166 LGHRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTFE 211

Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'-phosphopantetheine. Has no activity toward NDP-sugars, CDP-alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A7MKE8|NUDL_CROS8 Uncharacterized Nudix hydrolase NudL OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=nudL PE=3 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 24/183 (13%)

Query: 48  SSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALRE 107
           S  +++AAVLV +    +  L   LTKR++ L  H+G+VA PGG  ++ DA     ALRE
Sbjct: 26  SLNQRQAAVLVPVVRRPEPGL--LLTKRAATLRKHAGQVAFPGGAVDDTDASLIAAALRE 83

Query: 108 AKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLE 167
           A+EE+ + P  V+V+ +L P+ +  G  V PV+GI+P    +  + +  EV A+F+ PL 
Sbjct: 84  AQEEVAIPPEAVDVIGVLPPVDSVTGFQVTPVVGIIPPDLPYHASED--EVAAVFEMPLA 141

Query: 168 MFLK-------DENRRA-EEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVH 219
             L+       D +RR    R W+ +               Y +W +TAGI+  +A  + 
Sbjct: 142 EALRLGRYHPLDIHRRGNHHRVWLSWY------------QHYFVWGMTAGIIRELALQIG 189

Query: 220 QCP 222
           + P
Sbjct: 190 EKP 192

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A4WBH1|NUDL_ENT38 Uncharacterized Nudix hydrolase NudL OS=Enterobacter sp. (strain 638) GN=nudL PE=3 SV=1

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 24/180 (13%)

Query: 51  KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKE 110
           +++AAVL+ L       L   LTKR+S++  H G+VA PGG  +  DA     ALREA E
Sbjct: 29  RRQAAVLIPLVRREQPGL--LLTKRASHMRKHPGQVAFPGGAVDSTDASLIAAALREAHE 86

Query: 111 EIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL 170
           E+ + P +V ++ +L P+ +  G  V PV+GI+P    +    +  EV A+F+ PL   L
Sbjct: 87  EVAIPPEVVEIIGVLPPVDSVTGFQVTPVVGIIPPDLHY--HASEEEVAAVFEMPLSEAL 144

Query: 171 K-------DENRRA-EEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCP 222
           +       D  RR  + R W+ +               Y +W +TAGI+  +A  +   P
Sbjct: 145 RLSRYHPLDIQRRGHDHRVWLSWY------------QHYFVWGMTAGIIRELALQIGMKP 192

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q7N3M0|NUDL_PHOLL Uncharacterized Nudix hydrolase NudL OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=nudL PE=3 SV=1

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 8/172 (4%)

Query: 47  VSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALR 106
           +S   + AAVL+ +       L   LT+RS+ L SH+G+VA PGG  +  D     TALR
Sbjct: 22  LSDNNRHAAVLLPIICKPKPTL--LLTRRSATLRSHAGQVAFPGGVADPKDKSIIATALR 79

Query: 107 EAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPL 166
           EA+EE+ +    V V+  L P+ +  G +V P++G+LP   S     N AEV  IF+ PL
Sbjct: 80  EAEEEVNIPHQKVQVLGQLAPLNSSGGYLVTPIVGLLPPGLSL--HSNPAEVAKIFEVPL 137

Query: 167 EMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVV 218
              L   +    +    G ++ ++F+ Y+    +++IW LTA I+  +A  V
Sbjct: 138 SEALSLSSYHYLDVSRRGQQHRVYFYWYQ----QHLIWGLTATIIHQLAQQV 185

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|B1JP41|NUDL_YERPY Uncharacterized Nudix hydrolase NudL OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=nudL PE=3 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 12/183 (6%)

Query: 38  DSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEND 97
           D+  ++S   S+T +RAAVL+ +    +  L   LT+R+ +L  H+G+VA PGGK + +D
Sbjct: 25  DNVLTHSHYFSATNRRAAVLIPIICRPEPTL--LLTRRADHLRKHAGQVAFPGGKADPDD 82

Query: 98  ADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAE 157
                TALREA+EE+ +  S+V+V+  L P+ + +G  V P++G++P    F    N  E
Sbjct: 83  QSLISTALREAEEEVAIPASVVHVLGKLAPLNSSSGYHVTPIVGLVPANIPFY--GNDEE 140

Query: 158 VDAIFDAPLE--MFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVA 215
           V  +F+ PL   + L   +     RE + ++  L +++     N++ IW LTA I+ ++A
Sbjct: 141 VAGLFEIPLHEALSLSRYHSLDIHREGINHRVYLSWYE-----NQF-IWGLTATIIRHLA 194

Query: 216 SVV 218
             V
Sbjct: 195 QQV 197

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q66BW8|NUDL_YERPS Uncharacterized Nudix hydrolase NudL OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=nudL PE=3 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 12/183 (6%)

Query: 38  DSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEND 97
           D+  ++S   S+T +RAAVL+ +    +  L   LT+R+ +L  H+G+VA PGGK + +D
Sbjct: 25  DNVLTHSHYFSATNRRAAVLIPIICRPEPTL--LLTRRADHLRKHAGQVAFPGGKADPDD 82

Query: 98  ADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAE 157
                TALREA+EE+ +  S+V+V+  L P+ + +G  V P++G++P    F    N  E
Sbjct: 83  QSLISTALREAEEEVAIPASVVHVLGKLAPLNSSSGYHVTPIVGLVPANIPFY--GNDEE 140

Query: 158 VDAIFDAPLE--MFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVA 215
           V  +F+ PL   + L   +     RE + ++  L +++     N++ IW LTA I+ ++A
Sbjct: 141 VAGLFEIPLHEALSLSRYHSLDIHREGINHRVYLSWYE-----NQF-IWGLTATIIRHLA 194

Query: 216 SVV 218
             V
Sbjct: 195 QQV 197

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Yersinia pseudotuberculosis (taxid: 633)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
297740473	482	unnamed protein product [Vitis vinifera]	0.873	0.443	0.678	4e-83
225443510	227	PREDICTED: nudix hydrolase 15, mitochond	0.873	0.942	0.678	5e-83
225443508	282	PREDICTED: nudix hydrolase 15, mitochond	0.946	0.822	0.604	2e-76
224079121	238	predicted protein [Populus trichocarpa]	0.934	0.962	0.586	4e-75
449433774	350	PREDICTED: nudix hydrolase 15, mitochond	0.946	0.662	0.608	1e-74
357446879	330	Nudix hydrolase [Medicago truncatula] gi	0.889	0.660	0.580	1e-74
388500102	241	unknown [Lotus japonicus]	0.885	0.900	0.601	6e-74
449532332	239	PREDICTED: nudix hydrolase 15, mitochond	0.922	0.945	0.588	9e-74
449462667	239	PREDICTED: nudix hydrolase 15, mitochond	0.922	0.945	0.588	1e-73
224079127	245	predicted protein [Populus trichocarpa]	0.906	0.906	0.618	1e-73

>gi|297740473|emb|CBI30655.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 152/224 (67%), Positives = 178/224 (79%), Gaps = 10/224 (4%)

Query: 13  LETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKK--RAAVLVCLFEGNDGDLRV 70
           L+ L + LRLY   H  P+        Q S S + S+ +K  RAAVL+CLF+G +GDL V
Sbjct: 263 LKILAEELRLYKPPHSIPI--------QQSGSDSESARRKPNRAAVLICLFQGENGDLHV 314

Query: 71  FLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT 130
            LTKRSS LSSHSGEV+LPGGKREE DADD  TA+REAKEEIGLDPSLVN VT+L+P   
Sbjct: 315 ILTKRSSTLSSHSGEVSLPGGKREEGDADDIETAMREAKEEIGLDPSLVNAVTVLEPFVN 374

Query: 131 KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLH 190
           K G+IVVPV+GIL D+ +F+PAPN +EV+A+FD PLEMFLKDENRRAEEREWMG KYLLH
Sbjct: 375 KRGMIVVPVVGILSDKKAFVPAPNASEVEAVFDTPLEMFLKDENRRAEEREWMGDKYLLH 434

Query: 191 FFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWS 234
           +FDYEAE  +YVIWALTAGILI  AS+V+Q PPAF ER+PKFWS
Sbjct: 435 YFDYEAENERYVIWALTAGILIRTASIVYQRPPAFLERKPKFWS 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443510|ref|XP_002276338.1| PREDICTED: nudix hydrolase 15, mitochondrial [Vitis vinifera]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 152/224 (67%), Positives = 178/224 (79%), Gaps = 10/224 (4%)

Query: 13  LETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKK--RAAVLVCLFEGNDGDLRV 70
           L+ L + LRLY   H  P+        Q S S + S+ +K  RAAVL+CLF+G +GDL V
Sbjct: 8   LKILAEELRLYKPPHSIPI--------QQSGSDSESARRKPNRAAVLICLFQGENGDLHV 59

Query: 71  FLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT 130
            LTKRSS LSSHSGEV+LPGGKREE DADD  TA+REAKEEIGLDPSLVN VT+L+P   
Sbjct: 60  ILTKRSSTLSSHSGEVSLPGGKREEGDADDIETAMREAKEEIGLDPSLVNAVTVLEPFVN 119

Query: 131 KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLH 190
           K G+IVVPV+GIL D+ +F+PAPN +EV+A+FD PLEMFLKDENRRAEEREWMG KYLLH
Sbjct: 120 KRGMIVVPVVGILSDKKAFVPAPNASEVEAVFDTPLEMFLKDENRRAEEREWMGDKYLLH 179

Query: 191 FFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWS 234
           +FDYEAE  +YVIWALTAGILI  AS+V+Q PPAF ER+PKFWS
Sbjct: 180 YFDYEAENERYVIWALTAGILIRTASIVYQRPPAFLERKPKFWS 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443508|ref|XP_002276381.1| PREDICTED: nudix hydrolase 15, mitochondrial [Vitis vinifera]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/250 (60%), Positives = 183/250 (73%), Gaps = 18/250 (7%)

Query: 1   MDSNNSGDRSERLETLVQRLRLYNER-----HQNPVTEREA------VDSQDSYSVAVSS 49
           M+S+N    S+RL  L ++LRLY          + + ER +      V SQ  ++ + +S
Sbjct: 20  MESSNMVGGSQRLLNLARQLRLYKPSPPPSDDYDDLEERGSEEAAGKVVSQVGFAESATS 79

Query: 50  TK-------KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAG 102
            +       KRAAVL+CLFEG+ GDLRV LTKRSS LS+HSGEV+LPGGK+EE D DDA 
Sbjct: 80  VEYEGRFRPKRAAVLICLFEGDAGDLRVILTKRSSKLSTHSGEVSLPGGKQEEGDKDDAD 139

Query: 103 TALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIF 162
           TA REA EEIGLDPSLVNVVT+L+P  +K+ + VVPVIGIL D+ +F PAPN  EVDA+F
Sbjct: 140 TATREANEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVIGILSDKKAFEPAPNADEVDAVF 199

Query: 163 DAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCP 222
           DAPLEMF+KDENRR+EEREWMG KYL+HFFDYE E  KY+IW LTAGILI  ASVV Q P
Sbjct: 200 DAPLEMFIKDENRRSEEREWMGQKYLIHFFDYEMENKKYLIWGLTAGILIRAASVVFQQP 259

Query: 223 PAFQERRPKF 232
           PAF E++P F
Sbjct: 260 PAFLEQKPNF 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079121|ref|XP_002305757.1| predicted protein [Populus trichocarpa] gi|222848721|gb|EEE86268.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/237 (58%), Positives = 178/237 (75%), Gaps = 8/237 (3%)

Query: 1   MDSNNSGDRSERLETLVQRLRLYNER-HQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVC 59
           M S N G++S++L +L +RL LY    H N    R+       + +  S+  KRAAVL+C
Sbjct: 1   MASENRGEKSQKLISLSRRLSLYEPPPHLNNPARRQ-------HGIPKSANPKRAAVLIC 53

Query: 60  LFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV 119
           +FEGNDG+LRV LT+RSS LSSHSGEVALPGGKREE DADD  TALREAKEEIGLDPSLV
Sbjct: 54  IFEGNDGELRVILTQRSSQLSSHSGEVALPGGKREEGDADDIATALREAKEEIGLDPSLV 113

Query: 120 NVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEE 179
           +VVT+++P  T+  + V+PVIGIL D+ +F P P+ +EV+++FD PLEMFLK+ENRR  E
Sbjct: 114 DVVTVIEPYMTRFHVTVIPVIGILFDKKAFNPTPDASEVESVFDVPLEMFLKNENRREVE 173

Query: 180 REWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGL 236
            EWMG K+L HFFDY++    ++IWA TA ILI VA++V+Q PPAF ERRP  W+G+
Sbjct: 174 DEWMGDKFLCHFFDYQSGEKGFIIWAFTAAILIRVATIVYQRPPAFLERRPTLWNGI 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433774|ref|XP_004134672.1| PREDICTED: nudix hydrolase 15, mitochondrial-like [Cucumis sativus] gi|449531890|ref|XP_004172918.1| PREDICTED: nudix hydrolase 15, mitochondrial-like [Cucumis sativus]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/248 (60%), Positives = 177/248 (71%), Gaps = 16/248 (6%)

Query: 1   MDSN-NSGDRSERLETLVQRLRLYN-----ERHQNPVTERE--AVDSQDSYSVAVSSTK- 51
           MDS+ +S   S RL  L Q+LRLY      +  + P +E     V SQ  +  + +    
Sbjct: 22  MDSSADSSGCSRRLVALAQQLRLYKPPPLLDDIEEPSSEESNGKVVSQVGFPESTTPIPR 81

Query: 52  -------KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTA 104
                  KRAAVL+CLFEGNDGDLRV LTKRSS LS+HSGEVALPGGK EE D DD  TA
Sbjct: 82  DPERFRPKRAAVLICLFEGNDGDLRVILTKRSSRLSTHSGEVALPGGKAEEGDEDDGATA 141

Query: 105 LREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDA 164
            REAKEEIGLDPSLVNVVT+L+P  +K+ + VVPVIGI+ +RN+F P PN AEVD +FDA
Sbjct: 142 TREAKEEIGLDPSLVNVVTVLEPFLSKHLLRVVPVIGIMNERNAFNPRPNPAEVDEVFDA 201

Query: 165 PLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPA 224
           PL+MFLKDENRR+EEREWMG KYL+HFFDYE E  K+VIW LTAGILI  AS+V Q  P 
Sbjct: 202 PLDMFLKDENRRSEEREWMGCKYLVHFFDYETENKKFVIWGLTAGILIRAASIVLQSSPP 261

Query: 225 FQERRPKF 232
           F E+ P F
Sbjct: 262 FLEQNPIF 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446879|ref|XP_003593715.1| Nudix hydrolase [Medicago truncatula] gi|355482763|gb|AES63966.1| Nudix hydrolase [Medicago truncatula]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/231 (58%), Positives = 179/231 (77%), Gaps = 13/231 (5%)

Query: 6   SGDRSERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCLFEGND 65
           S + S+RL+TL+  L+  +  + NP+ E            ++    KRAAVL+CLFEG D
Sbjct: 2   SSNGSQRLQTLLHHLK--SPSNTNPLKE-----------TSIYKQNKRAAVLICLFEGQD 48

Query: 66  GDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTIL 125
           G+LRV LT+R+S+LS+H+GEVALPGGKR+E+DADD  TALREAKEEIGLDPSLV VVT+L
Sbjct: 49  GNLRVILTQRASSLSTHAGEVALPGGKRDESDADDIETALREAKEEIGLDPSLVTVVTLL 108

Query: 126 DPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGY 185
           +P  TK GI ++PV+GIL ++++F P  ++AEV+A+FD PLEMFLK++NRR+EEREW+G 
Sbjct: 109 EPFHTKYGITIIPVVGILSNKDTFSPILDSAEVEAVFDVPLEMFLKNDNRRSEEREWLGE 168

Query: 186 KYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGL 236
           K+L+H+FDYE E  KYVIWA+TA ILI  A+++ Q PPAF E+RPK W G+
Sbjct: 169 KHLVHYFDYEVENKKYVIWAITAAILIRAATLLLQRPPAFLEQRPKIWGGI 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500102|gb|AFK38117.1| unknown [Lotus japonicus]

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 168/226 (74%), Gaps = 9/226 (3%)

Query: 11  ERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRV 70
           ERL+ L+   R  N         R+  +S  +         KRAAVL+CLFE +DG+LRV
Sbjct: 10  ERLQALLHHFRSSNSLPNITNLSRDQFNSNPT---------KRAAVLICLFEDSDGNLRV 60

Query: 71  FLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT 130
           FLT+R+S+LS+HSGEVALPGGKREE DADD  TALREAKEEIGLDPSLV V+T+L+P  T
Sbjct: 61  FLTQRASSLSTHSGEVALPGGKREEGDADDVETALREAKEEIGLDPSLVTVITLLEPFHT 120

Query: 131 KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLH 190
           K GI ++PV+G+L D++ F P  N AEV+ IFD PLEMFLK++NRRA+EREWMG KYL H
Sbjct: 121 KYGITIIPVVGMLSDKDVFSPVLNAAEVETIFDVPLEMFLKNDNRRADEREWMGEKYLRH 180

Query: 191 FFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSGL 236
           +FDYE E  KYVIWA+TA +LI  A+V+ Q PPAF E+RPK W G+
Sbjct: 181 YFDYEVENKKYVIWAVTAAMLIRAATVILQRPPAFLEKRPKIWGGI 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532332|ref|XP_004173136.1| PREDICTED: nudix hydrolase 15, mitochondrial-like [Cucumis sativus]

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 165/236 (69%), Gaps = 10/236 (4%)

Query: 1   MDSNNSGDRS-ERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVC 59
           M S  SG+    RL+ L +  R  N     P             + A +    RAAVL+C
Sbjct: 1   MASKPSGEHILHRLKALAEHFRTSNSSQSLPSLPP---------TPAAAQLTNRAAVLIC 51

Query: 60  LFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV 119
           LF  + G+LRV LTKR+S LSSHSG+VALPGGKR+ +DADD  TALREA+EEIGL PSLV
Sbjct: 52  LFLTDIGELRVILTKRASTLSSHSGDVALPGGKRDVSDADDVATALREAEEEIGLTPSLV 111

Query: 120 NVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEE 179
           N++T+L P   K G+ VVPV+G+L  + +F P PN AEVDA+FD PLEMFLKDE RRAEE
Sbjct: 112 NIITVLQPFVNKKGMTVVPVLGLLSSKEAFNPTPNAAEVDAVFDVPLEMFLKDEKRRAEE 171

Query: 180 REWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSG 235
           +EWMGY YLLHFFDYE E  KYVIWALTAGILI  AS+V + PPAF ER P+FWS 
Sbjct: 172 KEWMGYNYLLHFFDYECENQKYVIWALTAGILIKAASLVFERPPAFLERPPRFWSA 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462667|ref|XP_004149062.1| PREDICTED: nudix hydrolase 15, mitochondrial-like [Cucumis sativus]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 165/236 (69%), Gaps = 10/236 (4%)

Query: 1   MDSNNSGDRS-ERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVC 59
           M S  SG+    RL+ L +  R  N     P             + A +    RAAVL+C
Sbjct: 1   MASKPSGEHILHRLKALAEHFRTSNSSQSLPSLPP---------TPAAAQLTNRAAVLIC 51

Query: 60  LFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV 119
           LF  + G+LRV LTKR+S LSSHSG+VALPGGKR+ +DADD  TALREA+EEIGL PSLV
Sbjct: 52  LFLTDIGELRVILTKRASTLSSHSGDVALPGGKRDVSDADDVATALREAEEEIGLTPSLV 111

Query: 120 NVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEE 179
           N++T+L P   K G+ VVPV+G+L  + +F P PN AEVDA+FD PLEMFLKDE RRAEE
Sbjct: 112 NIITVLQPFVNKKGMTVVPVLGLLSSKEAFNPTPNAAEVDAVFDVPLEMFLKDEKRRAEE 171

Query: 180 REWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKFWSG 235
           +EWMGY YLLHFFDYE E  KYVIWALTAGILI  AS+V + PPAF ER P+FWS 
Sbjct: 172 KEWMGYNYLLHFFDYECENEKYVIWALTAGILIKAASLVFERPPAFLERPPRFWSA 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079127|ref|XP_002305759.1| predicted protein [Populus trichocarpa] gi|222848723|gb|EEE86270.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/228 (61%), Positives = 171/228 (75%), Gaps = 6/228 (2%)

Query: 10  SERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKR-----AAVLVCLFEGN 64
           S+RL  L Q+LR Y     +P  E E  + ++S    V  T +R     AAVLVC+FEG+
Sbjct: 6   SQRLVALAQQLRFYKPPSLSP-DEIEEQNIEESAGKVVPQTPERFRPNRAAVLVCIFEGD 64

Query: 65  DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTI 124
            GD RV LTKRSS LS+HSGEV+LPGGK +E+D DD  TA REAKEEIGLDPSLVNVVT+
Sbjct: 65  AGDFRVILTKRSSKLSTHSGEVSLPGGKADESDKDDFETATREAKEEIGLDPSLVNVVTV 124

Query: 125 LDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMG 184
           L+P  +K+ + V+PVIGIL ++ +F P PN AEV+A+FDAPLEMF+KDENRR EEREWMG
Sbjct: 125 LEPFLSKHLLRVIPVIGILTNKKAFKPTPNPAEVEAVFDAPLEMFIKDENRRVEEREWMG 184

Query: 185 YKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRPKF 232
            KYL+HFFDYE    KY+IW LTAGILI  ASVV+Q PPAF E+ P+F
Sbjct: 185 EKYLIHFFDYETGNKKYLIWGLTAGILIKAASVVYQRPPAFVEQNPRF 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2055420	302	NUDT22 "nudix hydrolase homolo	0.902	0.731	0.551	3.2e-58
TAIR|locus:2152415	222	NUDT11 "nudix hydrolase homolo	0.746	0.824	0.585	6.3e-53
UNIPROTKB|H9KZB9	307	H9KZB9 "Uncharacterized protei	0.702	0.560	0.401	8.7e-24
UNIPROTKB|E1C8S6	307	NUDT7 "Uncharacterized protein	0.702	0.560	0.401	1.1e-23
UNIPROTKB|G1RS58	238	NUDT7 "Uncharacterized protein	0.689	0.710	0.367	3.9e-21
MGI|MGI:1914778	236	Nudt7 "nudix (nucleoside dipho	0.710	0.737	0.357	3.9e-21
UNIPROTKB|P0C024	238	NUDT7 "Peroxisomal coenzyme A	0.689	0.710	0.367	4.9e-21
UNIPROTKB|F7HNB1	238	NUDT7 "Uncharacterized protein	0.653	0.672	0.371	6.3e-21
UNIPROTKB|F1S465	238	F1S465 "Uncharacterized protei	0.746	0.768	0.356	1e-20
UNIPROTKB|F1S466	233	LOC100738827 "Uncharacterized	0.746	0.785	0.356	1e-20

TAIR|locus:2055420 NUDT22 "nudix hydrolase homolog 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 129/234 (55%), Positives = 161/234 (68%)

Query:    10 SERLETLVQRLRLYNERHQNPVTEREAV-----DSQDSY-------SVA-VSSTKKRAAV 56
             S RL  L Q+LR+Y     +   ERE +      ++ S        S+A V    K+AAV
Sbjct:    19 SSRLLALAQQLRVYKPPLSSSFDEREELLAYKESTRKSITHVGFQESMAPVRFRPKKAAV 78

Query:    57 LVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP 116
             L+CLFEG+DGDLRV LTKRSS LS+HSGEV+LPGGK EE+D DD  TA REA+EEIGLDP
Sbjct:    79 LICLFEGDDGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREAEEEIGLDP 138

Query:   117 SLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRR 176
             SLV+VV  L+P  +++          L DR +F P PN AEV+A+ DAP EMFLKDENRR
Sbjct:   139 SLVDVVAFLEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEMFLKDENRR 198

Query:   177 AEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVVHQCPPAFQERRP 230
             +EE +WMG K+L+HFFDY+   + YVIW LTA ILI  A+VV+Q PPAF E++P
Sbjct:   199 SEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKP 252

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

TAIR|locus:2152415 NUDT11 "nudix hydrolase homolog 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 110/188 (58%), Positives = 135/188 (71%)

Query:    52 KRAAVLVCLFEGNDGD---LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREA 108
             K +AVLVCL++    D   LRV LTKRS+ LSSH GEVALPGGKR++ D DD  TALREA
Sbjct:    32 KSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIATALREA 91

Query:   109 KEEIGLDPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEM 168
             +EEIGLDPSLV ++++L+P   K           L D+ +F   PN AEV+ IFD PLEM
Sbjct:    92 REEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFDVPLEM 151

Query:   169 FLKDENRRAEEREWMGYKYLLHFFDYEAEGNK--YVIWALTAGILINVASVVHQCPPAFQ 226
             FLKD NRRAEERE  G +YLL +FDY +E  +  ++IWALTAGILI VAS+V+Q  P FQ
Sbjct:   152 FLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQRLPEFQ 211

Query:   227 ERRPKFWS 234
             ER+P FW+
Sbjct:   212 ERKPSFWN 219

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA;RCA

GO:0000210 "NAD+ diphosphatase activity" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0010945 "CoA pyrophosphatase activity" evidence=IDA

GO:0015937 "coenzyme A biosynthetic process" evidence=IDA

GO:2001294 "malonyl-CoA catabolic process" evidence=IDA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

UNIPROTKB|H9KZB9 H9KZB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 71/177 (40%), Positives = 93/177 (52%)

Query:    52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
             ++A+VL+ L    DG L + LT RS  L    GEV  PGGKREE D D+  TALREAKEE
Sbjct:   103 RKASVLLPLLL-RDGALCLLLTVRSMQLRRSPGEVCFPGGKREEMDKDEIDTALREAKEE 161

Query:   112 IGLDPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171
             +GL P  V V+  L P   K           + D  +F  +PN  EV  +F  PLE FLK
Sbjct:   162 VGLQPEKVEVICRLVPGIDKMNHLVTPVVGFIED--TFQASPNPDEVSDVFVVPLEYFLK 219

Query:   172 DENRRAEEREWMGYKYLLHFFDYEAEGNK--YVIWALTAGILINVASVVHQCPPAFQ 226
               N  A   +  GY   +H F Y+   +K  + IW LTA   + +A V+ +  P F+
Sbjct:   220 PLNYVALPYKNKGYLSWMHCFTYDDHEHKKSFKIWGLTAHFAVFLAIVIFRTKPTFE 276

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

UNIPROTKB|E1C8S6 NUDT7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 71/177 (40%), Positives = 93/177 (52%)

Query:    52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
             ++A+VL+ L    DG L + LT RS  L    GEV  PGGKREE D D+  TALREAKEE
Sbjct:   103 RKASVLLPLLL-RDGALCLLLTVRSMQLRRSPGEVCFPGGKREEIDKDEIDTALREAKEE 161

Query:   112 IGLDPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171
             +GL P  V V+  L P   K           + D  +F  +PN  EV  +F  PLE FLK
Sbjct:   162 VGLQPEKVEVICRLVPGIDKMNHLVTPVVGFIED--TFQASPNPDEVSDVFVVPLEYFLK 219

Query:   172 DENRRAEEREWMGYKYLLHFFDYEAEGNK--YVIWALTAGILINVASVVHQCPPAFQ 226
               N  A   +  GY   +H F Y+   +K  + IW LTA   + +A V+ +  P F+
Sbjct:   220 PLNYVALPYKNKGYLSWMHCFTYDDHEHKKSFKIWGLTAHFAVFLAIVIFRTKPTFE 276

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

UNIPROTKB|G1RS58 NUDT7 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 64/174 (36%), Positives = 88/174 (50%)

Query:    55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL 114
             +VL+ L    +G L +  T RS  L    GEV  PGGKR+  D DDA TALREA+EE+GL
Sbjct:    41 SVLLPLV-AKEGKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGL 99

Query:   115 DPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174
              P  V VV  L P    +          L D N F   PN AEV  +F  PL  FL  + 
Sbjct:   100 HPHQVEVVCCLMPCLI-DTDTMITPFVGLIDHN-FQAQPNPAEVKDVFLVPLAYFLHPQV 157

Query:   175 RRAEEREWMGYKYLLHFFDYE--AEGNKYVIWALTAGILINVASVVHQCPPAFQ 226
                     +G++++ H F+Y    +G  Y I  +TA + + VA ++ +  P F+
Sbjct:   158 HDQHYVTRLGHRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTFE 211

GO:0003986 "acetyl-CoA hydrolase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0015938 "coenzyme A catabolic process" evidence=ISS

GO:0046356 "acetyl-CoA catabolic process" evidence=ISS

MGI|MGI:1914778 Nudt7 "nudix (nucleoside diphosphate linked moiety X)-type motif 7" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 64/179 (35%), Positives = 91/179 (50%)

Query:    50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAK 109
             +  + +VLV L     G L +  T RS  L    GEV  PGGKR+  D DD  TALREA+
Sbjct:    36 SSNKFSVLVPLL-ARGGKLYLMFTVRSDKLKREPGEVCFPGGKRDPVDTDDTATALREAQ 94

Query:   110 EEIGLDPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEMF 169
             EE+GL P  V VV+ L P    N          L D N F   PN  EV  +F  PL+ F
Sbjct:    95 EEVGLHPHQVEVVSHLVPYVFDNDALVTPVVGFL-DHN-FQAQPNADEVKEVFFVPLDYF 152

Query:   170 LKDENRRAEEREWMGYKYLLHFFDYE--AEGNKYVIWALTAGILINVASVVHQCPPAFQ 226
             L  +    ++    G  +++H F+Y+    G  Y+I  +T+ + + VA ++ +  PAF+
Sbjct:   153 LHPQVYYQKQITQSGRDFIMHCFEYKDPETGVNYLIQGMTSKLAVLVALIILEQSPAFK 211

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003986 "acetyl-CoA hydrolase activity" evidence=IDA

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0015938 "coenzyme A catabolic process" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0046356 "acetyl-CoA catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA

GO:0050873 "brown fat cell differentiation" evidence=IDA

UNIPROTKB|P0C024 NUDT7 "Peroxisomal coenzyme A diphosphatase NUDT7" [Homo sapiens (taxid:9606)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 64/174 (36%), Positives = 88/174 (50%)

Query:    55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL 114
             +VL+ L    +G L +  T RS  L    GEV  PGGKR+  D DDA TALREA+EE+GL
Sbjct:    41 SVLLPLV-AKEGKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGL 99

Query:   115 DPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN 174
              P  V VV  L P    +          L D N F   PN AEV  +F  PL  FL  + 
Sbjct:   100 RPHQVEVVCCLVPCLI-DTDTLITPFVGLIDHN-FQAQPNPAEVKDVFLVPLAYFLHPQV 157

Query:   175 RRAEEREWMGYKYLLHFFDYE--AEGNKYVIWALTAGILINVASVVHQCPPAFQ 226
                     +G++++ H F+Y    +G  Y I  +TA + + VA ++ +  P F+
Sbjct:   158 HDQHYVTRLGHRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTFE 211

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISS

GO:0005102 "receptor binding" evidence=IPI

GO:0015938 "coenzyme A catabolic process" evidence=ISS

GO:0046356 "acetyl-CoA catabolic process" evidence=ISS

GO:0003986 "acetyl-CoA hydrolase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0030515 "snoRNA binding" evidence=ISS

UNIPROTKB|F7HNB1 NUDT7 "Uncharacterized protein" [Macaca mulatta (taxid:9544)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 61/164 (37%), Positives = 83/164 (50%)

Query:    65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTI 124
             +G L +  T RS  L    GEV  PGGKR+  D DDA TALREA+EE+GL P  V VV  
Sbjct:    50 EGKLHLLFTVRSEKLRRAPGEVCFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCC 109

Query:   125 LDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMG 184
             L P    +          L D N F   PN AEV  +F  PL  FL  +         +G
Sbjct:   110 LVPCLI-DTDALITPFVGLIDHN-FQAQPNPAEVKDVFLVPLAYFLHPQVHDQHYVTRLG 167

Query:   185 YKYLLHFFDYE--AEGNKYVIWALTAGILINVASVVHQCPPAFQ 226
             ++++ H F+Y    +G  Y I  +TA + + VA ++ +  P F+
Sbjct:   168 HRFINHIFEYTNPEDGVTYQIKGMTANLAVLVAFIILEKKPTFE 211

GO:0003986 "acetyl-CoA hydrolase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0015938 "coenzyme A catabolic process" evidence=ISS

GO:0046356 "acetyl-CoA catabolic process" evidence=ISS

UNIPROTKB|F1S465 F1S465 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 68/191 (35%), Positives = 92/191 (48%)

Query:    38 DSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEND 97
             D+   YS   SS   + ++L+ L    +G L + LT RS  L    GEV  PGGKRE  D
Sbjct:    27 DAGTKYSHLPSS---KYSILLPLL-AKEGKLYLLLTLRSDKLRRSPGEVCFPGGKREPTD 82

Query:    98 ADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAE 157
              DD  TALREA+EE+GL P  V VV  L P+  +           + D N F   PN  E
Sbjct:    83 KDDMATALREAQEEVGLCPHQVEVVCRLVPLLIEGNALITPVVGFI-DHN-FQATPNPDE 140

Query:   158 VDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYE--AEGNKYVIWALTAGILINVA 215
             V  +F  PLE FL+            GY  ++H F+Y    +G  Y I  +TA   + +A
Sbjct:   141 VKNVFLVPLEYFLRPRVYHQNHITQSGYHVIVHCFEYTDPEDGVTYCIRGITAKCALLIA 200

Query:   216 SVVHQCPPAFQ 226
              ++    P F+
Sbjct:   201 LIILGQKPTFE 211

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|F1S466 LOC100738827 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 68/191 (35%), Positives = 92/191 (48%)

Query:    38 DSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEND 97
             D+   YS   SS   + ++L+ L    +G L + LT RS  L    GEV  PGGKRE  D
Sbjct:    26 DAGTKYSHLPSS---KYSILLPLL-AKEGKLYLLLTLRSDKLRRSPGEVCFPGGKREPTD 81

Query:    98 ADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNXXXXXXXXXXLPDRNSFIPAPNTAE 157
              DD  TALREA+EE+GL P  V VV  L P+  +           + D N F   PN  E
Sbjct:    82 KDDMATALREAQEEVGLCPHQVEVVCRLVPLLIEGNALITPVVGFI-DHN-FQATPNPDE 139

Query:   158 VDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYE--AEGNKYVIWALTAGILINVA 215
             V  +F  PLE FL+            GY  ++H F+Y    +G  Y I  +TA   + +A
Sbjct:   140 VKNVFLVPLEYFLRPRVYHQNHITQSGYHVIVHCFEYTDPEDGVTYCIRGITAKCALLIA 199

Query:   216 SVVHQCPPAFQ 226
              ++    P F+
Sbjct:   200 LIILGQKPTFE 210

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0009132 "nucleoside diphosphate metabolic process" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYB1	NUD15_ARATH	3, ., 6, ., 1, ., -	0.5774	0.9020	0.7754	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002993001 SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (227 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
PLN02709	222	PLN02709, PLN02709, nudix hydrolase	2e-79
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	4e-64
PRK10707	190	PRK10707, PRK10707, putative NUDIX hydrolase; Prov	1e-30
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-10
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	2e-07
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-06
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	2e-04
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	0.001
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	0.002
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	0.003
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	0.003
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	0.004
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	0.004

>gnl|CDD|178311 PLN02709, PLN02709, nudix hydrolase

 Score =  237 bits (606), Expect = 2e-79
 Identities = 118/188 (62%), Positives = 145/188 (77%), Gaps = 5/188 (2%)

Query: 52  KRAAVLVCLFEGNDGD---LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREA 108
           K +AVLVCL++    D   LRV LTKRSS LSSH GEVALPGGKR+E D DD  TALREA
Sbjct: 32  KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREA 91

Query: 109 KEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEM 168
           +EEIGLDPSLV ++++L+P   K G+ V PVIG L D+ +F P PN AEV+ IFD PLEM
Sbjct: 92  REEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEM 151

Query: 169 FLKDENRRAEEREWMGYKYLLHFFDYEAEGNK--YVIWALTAGILINVASVVHQCPPAFQ 226
           FLKD+N+RAEERE  G +YLL +FDY +E  +  ++IWALTAGILI VAS+V+Q  P FQ
Sbjct: 152 FLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIWALTAGILIRVASIVYQRLPEFQ 211

Query: 227 ERRPKFWS 234
           ER+P+FW+
Sbjct: 212 ERKPRFWN 219

Length = 222

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score =  196 bits (501), Expect = 4e-64
 Identities = 74/163 (45%), Positives = 94/163 (57%), Gaps = 6/163 (3%)

Query: 52  KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
           +RAAVLV L E  +G+LRV LTKR+S+L SH G+VA PGGK +  D D   TALREA+EE
Sbjct: 1   RRAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEE 59

Query: 112 IGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171
           IGL P  V V+  L P +T++G +V PV+G++P     +  P   EV  +F+ PL   L 
Sbjct: 60  IGLPPDSVEVLGRLPPYYTRSGFVVTPVVGLVPPPLPLVLNP--DEVAEVFEVPLSFLLD 117

Query: 172 DENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINV 214
             N R   R   G       F     G  YVIW LTA IL  +
Sbjct: 118 PANPRTTRRHGRGG-LTFPAFAL--PGEGYVIWGLTARILSEL 157

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|182663 PRK10707, PRK10707, putative NUDIX hydrolase; Provisional

 Score =  112 bits (281), Expect = 1e-30
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 22/175 (12%)

Query: 48  SSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALRE 107
           +  +++AAVL+ +       L   LT+RS +L  H+G+VA PGG  +  DA    TALRE
Sbjct: 26  TLNQRQAAVLIPIVRRPQPTL--LLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALRE 83

Query: 108 AKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLE 167
           A+EE+ + PS V V+ +L P+ +  G  V PV+GI+P    +    N  EV A+F+ PL 
Sbjct: 84  AQEEVAIPPSAVEVIGVLPPVDSSTGYQVTPVVGIIPPDLPY--RANEDEVAAVFEMPLA 141

Query: 168 MFLK-------DENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVA 215
             L        D  RR       G  + +    YE    +Y +W +TAGI+  +A
Sbjct: 142 EALHLGRYHPLDIYRR-------GQSHRVWLSWYE----QYFVWGMTAGIIRELA 185

Length = 190

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 52  KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
           +R AV V L    + D  V L +RS       G   LPGGK E  +      A+RE +EE
Sbjct: 1   RRRAVGVVLL---NEDGEVLLVRRSRP-PVFPGLWELPGGKVEPGE-SPEEAAVRELEEE 55

Query: 112 IGLDPSLVNVVTILDPIFT--KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMF 169
            GL   L+ ++ +L+        G  V   +  L       P PN  EV  +   PLE  
Sbjct: 56  TGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPE-PQPNEDEVSEVRWVPLEEL 114

Query: 170 LKD 172
           L+ 
Sbjct: 115 LEL 117

Length = 133

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 50  TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAK 109
            +K   V V +  G DG   V L +R  +     G   LPGGK E  +      A RE +
Sbjct: 6   QRKVRDVAVAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELE 61

Query: 110 EEIGLDPSLVNVVTILD 126
           EE GL      +  + +
Sbjct: 62  EETGLRVKDERLELLGE 78

Length = 161

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 53  RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEI 112
            A   V L    D D RV L +R+    S  G   LPGG  E  +      A+RE +EE 
Sbjct: 1   VAVGAVIL----DEDGRVLLVRRAD---SPGGLWELPGGGVEPGE-TLEEAAIREVREET 52

Query: 113 GLDPSLVNVVTILDPIFTKNG---IIVVPVIGILPDRNSFIPAPNTAEV 158
           GLD  ++ ++ + +      G   ++ V +  ++    + +P    +EV
Sbjct: 53  GLDVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEPTLLPPDEISEV 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 69  RVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLDPSLVNVVTILD 126
           R+ L +R++     +G  ALPGG  E     ++A  A RE KEE GL   ++ ++ + D
Sbjct: 22  RILLVRRAN--EPGAGYWALPGGFVEIGETLEEA--ARRELKEETGLRVRVLELLAVFD 76

Length = 145

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 10/73 (13%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTAL-REAKEEIG 113
           AV V L   +     V L +R+ N     G+ ALP G  E+   +DA TA  REA+EEIG
Sbjct: 2   AVYVLLRRDD----EVLLQRRA-NTGYMDGQWALPAGHLEK--GEDAVTAAVREAREEIG 54

Query: 114 --LDPSLVNVVTI 124
             LDP  + +   
Sbjct: 55  VTLDPEDLRLAHT 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 53  RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKRE--ENDADDAGTALREAKE 110
           R  V V +     G  +V L KR    S  +G  ALPGG  E  E+  +    A RE  E
Sbjct: 2   RVGVGVFVL-NPKG--KVLLGKRKG--SHGAGTWALPGGHLEFGESFEE---CAAREVLE 53

Query: 111 EIGLDPSLVNVVTILDPIFTKNG 133
           E GL    V  +T+ + +F + G
Sbjct: 54  ETGLHIENVQFLTVTNDVFEEEG 76

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 67  DLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP 116
           D +V L +RS   ++  G++ +PGG  E  ++      LRE +EE+G+DP
Sbjct: 10  DDKVLLERRSLTKNADPGKLNIPGGHIEAGES-QEEALLREVQEELGVDP 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEND-ADDAGTALREAKEEIG 113
           AV   +F G     RV L +R++   +  G  + PGGK E  +  + A  ALRE  EE G
Sbjct: 2   AVGAVVFRGG----RVLLVRRANPPDA--GLWSFPGGKVELGETLEQA--ALRELLEETG 53

Query: 114 LDPSLVNVVTILDPI 128
           L+  +  ++T++D I
Sbjct: 54  LEAEVGRLLTVVDVI 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 65  DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTI 124
           D + RV L +RS N     G  ALPGG  E      A TA+RE +EE GLD  +  +V I
Sbjct: 11  DDEGRVLLIRRSDN-----GLWALPGGAVEP-GESPADTAVREVREETGLDVEVTGLVGI 64

Query: 125 LDP 127
              
Sbjct: 65  YTG 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGG--KREENDADDAGTALREAKEEI 112
           AVL+        D ++ LT+R+S+L         PGG  +  EN  +     LRE  EE 
Sbjct: 5   AVLL-----QSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLE---AGLRELNEET 56

Query: 113 GL 114
           GL
Sbjct: 57  GL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PLN02709	222	nudix hydrolase	100.0
PRK10707	190	putative NUDIX hydrolase; Provisional	100.0
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.97
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	99.96
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.81
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.81
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.8
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.79
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.79
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.79
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.77
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.77
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.77
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.77
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.76
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.76
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.76
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.75
PLN02325	144	nudix hydrolase	99.75
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.75
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.75
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.75
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.75
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.75
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.74
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.74
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.74
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.74
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.74
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.74
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.73
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.73
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.72
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.72
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.72
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.72
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.72
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.71
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.71
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.71
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.71
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.7
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.7
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.7
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.7
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.69
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.69
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.69
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.69
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.68
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.68
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.68
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.67
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.67
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.66
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.66
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.65
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.65
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.65
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.64
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.64
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.64
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.63
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.62
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.62
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.61
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.6
PLN02791	770	Nudix hydrolase homolog	99.59
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.58
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.57
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.56
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.54
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.52
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.51
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.5
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.5
PRK08999	312	hypothetical protein; Provisional	99.49
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.46
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.45
PLN03143	291	nudix hydrolase; Provisional	99.41
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.37
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.36
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.35
PLN02839	372	nudix hydrolase	99.33
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.27
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.22
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.12
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	99.09
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.03
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.81
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	98.54
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.52
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.39
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	98.07
KOG4195	275	consensus Transient receptor potential-related cha	97.65
PRK10880	350	adenine DNA glycosylase; Provisional	96.68
COG4112	203	Predicted phosphoesterase (MutT family) [General f	96.36
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	95.73
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	95.64
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	94.43
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	90.75
PRK13910	289	DNA glycosylase MutY; Provisional	90.48
PF14443	126	DBC1: DBC1	87.6
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	87.44
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	85.41
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	84.75

>PLN02709 nudix hydrolase

Probab=100.00  E-value=1.1e-39  Score=277.93  Aligned_cols=180  Identities=63%  Similarity=1.045  Sum_probs=156.8

Q ss_pred             CCCceEEEEEEEEcC---CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeC
Q 025996           50 TKKRAAVLVCLFEGN---DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILD  126 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~---~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~  126 (245)
                      ..|+|||+|+|+...   +++++|||++|+..+++|+|+|+||||++|++|+++.+||+||++||+||+...++++|.++
T Consensus        30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~  109 (222)
T PLN02709         30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLE  109 (222)
T ss_pred             CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecC
Confidence            467899999998632   35789999999999989999999999999998878999999999999999999999999999


Q ss_pred             CcccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEeecC--CCceEEe
Q 025996          127 PIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAE--GNKYVIW  204 (245)
Q Consensus       127 ~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iW  204 (245)
                      .+.+.+++.|+||++.+.....+...+|++||++++|+|+++|+++.++......+.|..+.+++|.+..+  ..++.||
T Consensus       110 ~~~t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~IW  189 (222)
T PLN02709        110 PFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIW  189 (222)
T ss_pred             CeECCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCcccceEEEEeCCceEEEEEEEEeccCCCCCCEEE
Confidence            98888899999999999754345556899999999999999999999887777778888888898887321  1368999


Q ss_pred             chhHHHHHHHHHHHhCCCCCccccC
Q 025996          205 ALTAGILINVASVVHQCPPAFQERR  229 (245)
Q Consensus       205 G~Ta~il~~~~~~~~~~~p~~~~~~  229 (245)
                      |+||+||..++.+++++.|+|....
T Consensus       190 G~TA~IL~~l~~~~~~~~~~~~~~~  214 (222)
T PLN02709        190 ALTAGILIRVASIVYQRLPEFQERK  214 (222)
T ss_pred             cHHHHHHHHHHHHHhccCCCccccc
Confidence            9999999999999999999985443

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=100.00  E-value=1.3e-33  Score=237.40  Aligned_cols=185  Identities=33%  Similarity=0.523  Sum_probs=150.6

Q ss_pred             CchhHHHHHHHHhhcCCCCCCCccccccccccCccccccCCCCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC
Q 025996            9 RSERLETLVQRLRLYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL   88 (245)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f   88 (245)
                      ++.++..++++++...+.....                 ....+.+||++++....  +..||+++|+...+.++|+|+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~aavvl~l~~~~--~~~vLl~~R~~~~r~~~G~~~~   64 (190)
T PRK10707          4 RSLTLDDFLSRFQLQRPQPNRE-----------------TLNQRQAAVLIPIVRRP--QPTLLLTQRSIHLRKHAGQVAF   64 (190)
T ss_pred             cccCHHHHHHHHhcCCCccccc-----------------cccCCCeEEEEEEEECC--CCEEEEEEeCCcccCCCCcEEc
Confidence            4567788888875533221111                 11456788888887532  3489999999988889999999


Q ss_pred             CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccc
Q 025996           89 PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEM  168 (245)
Q Consensus        89 PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~e  168 (245)
                      |||++|++|+++++||+||++||||+++..+++++.+.+..+..++.++++++.+....  ...+|++|+.+++|+|+++
T Consensus        65 PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~~~~~v~~~~~~~--~~~~d~~Ev~~v~~vpl~e  142 (190)
T PRK10707         65 PGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQVTPVVGIIPPDL--PYRANEDEVAAVFEMPLAE  142 (190)
T ss_pred             CCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcEEEEEEEEECCCC--CCCCChhhhheEEEEeHHH
Confidence            99999997658999999999999999999999999998777777889999999887643  3457889999999999999


Q ss_pred             ccccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechhHHHHHHHHHHH
Q 025996          169 FLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVASVV  218 (245)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~Ta~il~~~~~~~  218 (245)
                      +.+...+......+.|..+.+++|.+    +++.|||+||+||.+++..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iWG~Ta~il~~~~~~~  188 (190)
T PRK10707        143 ALHLGRYHPLDIYRRGQSHRVWLSWY----EQYFVWGMTAGIIRELALQI  188 (190)
T ss_pred             HhCcccceeEEEeeCCcEEEEEEEEe----CCcEEEhHHHHHHHHHHHHh
Confidence            99988777666677788888899988    47899999999999998875

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.97  E-value=2.5e-30  Score=211.06  Aligned_cols=156  Identities=46%  Similarity=0.760  Sum_probs=124.4

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCC-CCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLDPSLVNVVTILDPIFT  130 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~g-E~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~  130 (245)
                      |++||+|++++. +++.+|||+||+..+..++|.|+||||++|+| | ++.+||+||++||||+++..+.+++.+.....
T Consensus         1 ~~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdE-s~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~   78 (157)
T cd03426           1 RRAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDE-DPVATALREAEEEIGLPPDSVEVLGRLPPYYT   78 (157)
T ss_pred             CceEEEEEEEeC-CCceEEEEEEcccccccCCCcEECCCCCcCCCcC-CHHHHHHHHHHHHhCCCccceEEEEECCCccc
Confidence            478999988873 44569999999998767999999999999999 8 99999999999999999998888988876665


Q ss_pred             CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechhHHH
Q 025996          131 KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGI  210 (245)
Q Consensus       131 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~Ta~i  210 (245)
                      ..+..++.|++.+...  ....++++|+.++.|+|++++.+..+.....+.+.+ ....+++.++.  ...+|||+||+|
T Consensus        79 ~~~~~v~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~iwg~t~~i  153 (157)
T cd03426          79 RSGFVVTPVVGLVPPP--LPLVLNPDEVAEVFEVPLSFLLDPANPRTTRRHGRG-GLTFPAFALPG--EGYVIWGLTARI  153 (157)
T ss_pred             cCCCEEEEEEEEECCC--CCCCCCHHHhheeEEEcHHHHhCcCCceEEEEEeCC-ceEEEEEEecC--CCcEEEhHHHHH
Confidence            5567788888877653  234678889999999999999998766544444444 12244555542  368999999999


Q ss_pred             HHHH
Q 025996          211 LINV  214 (245)
Q Consensus       211 l~~~  214 (245)
                      |.++
T Consensus       154 ~~~~  157 (157)
T cd03426         154 LSEL  157 (157)
T ss_pred             HhhC
Confidence            9874

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=99.96  E-value=6.9e-30  Score=215.43  Aligned_cols=182  Identities=37%  Similarity=0.562  Sum_probs=145.1

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      ..+.+||+|+|+...++++.|||+||+.+++.|+|+++||||++|+.|.+..+||+||+.||+|+++..+++++.++++.
T Consensus        40 ~~~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~  119 (246)
T KOG3069|consen   40 PNRKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFV  119 (246)
T ss_pred             CCCCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhcccee
Confidence            56789999999986577899999999999999999999999999999989999999999999999999999999999998


Q ss_pred             cCCceEEEEEEEEeCCCCC-CCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEee--cCCCceEEech
Q 025996          130 TKNGIIVVPVIGILPDRNS-FIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYE--AEGNKYVIWAL  206 (245)
Q Consensus       130 ~~~~~~v~~~v~~~~~~~~-~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iWG~  206 (245)
                      ...+..|.|+++.+....- ....+|++||.+++|||+++|+.+...+.......+......++.+-  .......+||+
T Consensus       120 ~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~i  199 (246)
T KOG3069|consen  120 LRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPKHQTAFQISRSYYRTYFFFIEYFFIWGVTNLFLWGI  199 (246)
T ss_pred             eccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhhhhcchHHHHhhhhhccchhhheeehhccCcchhhHHH
Confidence            8788999999998876421 45678999999999999999999887664332222222211112211  11235699999


Q ss_pred             hHHHHHHHHHHHhCCCCCccccCCC
Q 025996          207 TAGILINVASVVHQCPPAFQERRPK  231 (245)
Q Consensus       207 Ta~il~~~~~~~~~~~p~~~~~~~~  231 (245)
                      |+.||-.+...+++.-+++.....+
T Consensus       200 T~~Il~~~~~~l~~~l~~~~~~~~~  224 (246)
T KOG3069|consen  200 THGILGDLPNFLSPSLLTSLPYFQK  224 (246)
T ss_pred             HHHHHhcchhhcCchhhhccccccc
Confidence            9999999988888766655444333

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=1.6e-19  Score=144.87  Aligned_cols=119  Identities=19%  Similarity=0.168  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCcc
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIF  129 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~  129 (245)
                      +.+|.+.|++..+++.+||+++|+..+..+||.|++ |||++++|| ++++||+||++|||||.+.  .+..++.+...+
T Consensus         2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gE-t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~   80 (144)
T cd04692           2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGE-TPLEDGIRELEEELGLDVSADDLIPLGTFKIEY   80 (144)
T ss_pred             ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCC-CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence            567888888865555699999999987789999999 599999999 9999999999999999764  455666664433


Q ss_pred             c-C----CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          130 T-K----NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       130 ~-~----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      . .    .....+.|++..... ...+.++++|+.++.|+|++++.+.-
T Consensus        81 ~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~  128 (144)
T cd04692          81 DHIGKLIDREFHHVYLYELKVP-LEEFTLQKEEVAGVVLIPLDEFAELL  128 (144)
T ss_pred             cccCCCccceEEEEEEEeccCC-hhhcCCChhHhheEEEECHHHHHHHH
Confidence            2 1    122334555555431 12335677899999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=5.7e-19  Score=137.89  Aligned_cols=111  Identities=18%  Similarity=0.259  Sum_probs=82.1

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-  131 (245)
                      +.+|.+++++ .++  +|||++|...  ..+|.|++|||++|+|| ++.+||+||++||||+.+...++++........ 
T Consensus         2 ~~~~~~~i~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   75 (125)
T cd04679           2 RVGCGAAILR-DDG--KLLLVKRLRA--PEAGHWGIPGGKVDWME-AVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEP   75 (125)
T ss_pred             ceEEEEEEEC-CCC--EEEEEEecCC--CCCCeEeCCeeeccCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeecccCC
Confidence            3456666665 345  8999999864  45799999999999999 999999999999999999888888877654432 


Q ss_pred             -CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          132 -NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       132 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                       .......|++......  ....+++|+.++.|++++++.+
T Consensus        76 ~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~  114 (125)
T cd04679          76 PQHWVAPVYLAENFSGE--PRLMEPDKLLELGWFALDALPQ  114 (125)
T ss_pred             CCeEEEEEEEEeecCCc--cccCCCccccEEEEeCHHHCCc
Confidence             2233334555544321  1124567999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=7.3e-19  Score=137.96  Aligned_cols=110  Identities=18%  Similarity=0.191  Sum_probs=84.1

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      |+.+++++ .+|  +|||++|+..+..++|.|++ |||++++|| ++.+||+||++||||+++..+..++.+........
T Consensus         2 ~~~v~i~~-~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE-~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~   77 (126)
T cd04697           2 ATYIFVFN-SEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAGE-SYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNR   77 (126)
T ss_pred             eEEEEEEc-CCC--eEEEEECCCCCCCCCCcccCcCCcccCCCC-CHHHHHHHHHHHHHCCCccccEEeeEEEecCCCce
Confidence            46666676 456  89999999887678999999 699999999 99999999999999999988887777644322223


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...+.|.+....    ...++++|+.++.|++++++.+.
T Consensus        78 ~~~~~f~~~~~~----~~~~~~~E~~~~~w~~~~el~~~  112 (126)
T cd04697          78 VWGKVFSCVYDG----PLKLQEEEVEEITWLSINEILQF  112 (126)
T ss_pred             EEEEEEEEEECC----CCCCCHhHhhheEEcCHHHHHHH
Confidence            333445444432    23467789999999999999763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=9.4e-19  Score=137.31  Aligned_cols=108  Identities=20%  Similarity=0.304  Sum_probs=82.3

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      +||.+++++ .++  +|||++|...  .++|.|+||||+++.|| ++.+||+||++||||+++..+.+++.+...+...+
T Consensus         2 ~av~~~i~~-~~~--~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   75 (130)
T cd04681           2 AAVGVLILN-EDG--ELLVVRRARE--PGKGTLDLPGGFVDPGE-SAEEALIREIREETGLKVTELSYLFSLPNTYPYGG   75 (130)
T ss_pred             ceEEEEEEc-CCC--cEEEEEecCC--CCCCcEeCCceeecCCC-CHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC
Confidence            577777776 455  8999999875  46899999999999999 99999999999999999988888887654333222


Q ss_pred             eE----EEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996          134 II----VVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL  170 (245)
Q Consensus       134 ~~----v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~  170 (245)
                      ..    ...|++.+...   ....+.+|+.++.|+|++++.
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          76 MEYDTLDLFFVCQVDDK---PIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             ceeEEEEEEEEEEeCCC---CCcCChHHhheeEEecHHHCC
Confidence            21    12355555432   234567899999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.8e-18  Score=134.15  Aligned_cols=98  Identities=19%  Similarity=0.265  Sum_probs=76.3

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||+||+.....++|.|+||||++|+|| ++.+||+||++||||+++..+..++.+..... ....++.|.+.....  
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~--   87 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGE-SQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYYVVTFWQG--   87 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEEEEEEecC--
Confidence            89999998876568999999999999999 99999999999999999877777776654333 334455555544321  


Q ss_pred             CCCCCCcccceeEEEEccccccccC
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                         .++.+|+.++.|+|++++....
T Consensus        88 ---~~~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          88 ---EIPAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             ---CCCcccccccEEcCHHHcchhh
Confidence               1244899999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.4e-18  Score=135.27  Aligned_cols=101  Identities=26%  Similarity=0.245  Sum_probs=75.5

Q ss_pred             EEEEEEeCCC-CCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce--EEEEeCCcccCCceEEEEEEEEeCC
Q 025996           69 RVFLTKRSSN-LSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVN--VVTILDPIFTKNGIIVVPVIGILPD  145 (245)
Q Consensus        69 ~vLL~rR~~~-~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~--~lg~l~~~~~~~~~~v~~~v~~~~~  145 (245)
                      +|||++|+.. ...++|.|+||||+++.|| ++++||.||++||||+++....  ....+..  .......+.|++....
T Consensus        13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~   89 (122)
T cd04682          13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGE-TPLECVLRELLEEIGLTLPESRIPWFRVYPS--ASPPGTEHVFVVPLTA   89 (122)
T ss_pred             EEEEEEccCCCCCCCCCcEeCCCccccCCC-CHHHHHHHHHHHHhCCcccccccceeEeccc--CCCCceEEEEEEEEec
Confidence            8999999886 5578999999999999999 9999999999999999875332  2222221  1223345556655543


Q ss_pred             CCCCCCCCCcccceeEEEEccccccccCC
Q 025996          146 RNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       146 ~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      ..  ....+.+|+.++.|++++++.+..+
T Consensus        90 ~~--~~~~~~~E~~~~~W~~~~el~~~~~  116 (122)
T cd04682          90 RE--DAILFGDEGQALRLMTVEEFLAHED  116 (122)
T ss_pred             CC--CccccCchhheeecccHHHHhhccc
Confidence            22  2346779999999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=5.7e-18  Score=136.24  Aligned_cols=111  Identities=18%  Similarity=0.258  Sum_probs=81.8

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc--eEEEEeCCccc
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV--NVVTILDPIFT  130 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~--~~lg~l~~~~~  130 (245)
                      ..+|.+++++ .+|  +|||+||...  +++|.|+||||++|.|| |+.+||+||++||||+.+...  .+++.+...+.
T Consensus        12 ~v~v~~vI~~-~~g--~vLl~~R~~~--p~~g~w~lPGG~ve~gE-s~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~   85 (144)
T cd03430          12 LVSIDLIVEN-EDG--QYLLGKRTNR--PAQGYWFVPGGRIRKNE-TLTEAFERIAKDELGLEFLISDAELLGVFEHFYD   85 (144)
T ss_pred             eEEEEEEEEe-CCC--eEEEEEccCC--CCCCcEECCCceecCCC-CHHHHHHHHHHHHHCCCcccccceEEEEEEEEec
Confidence            4567776776 356  8999999864  67899999999999999 999999999999999988755  66666543221


Q ss_pred             ------C--CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 ------K--NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 ------~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                            .  ..+....|.+.....   .....++|+.++.|++++++...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          86 DNFFGDDFSTHYVVLGYVLKLSSN---ELLLPDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             cccccCCCccEEEEEEEEEEEcCC---cccCCchhccEeEEecHHHHhcC
Confidence                  1  122333455555432   22456789999999999999864

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.77  E-value=4.4e-18  Score=134.80  Aligned_cols=114  Identities=19%  Similarity=0.157  Sum_probs=85.2

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .+|.+++++ .++  ++||++|.... ..++.|+||||++|.|| ++.+||+||++||||+....+..++.+........
T Consensus         3 ~~v~v~~~~-~~~--~iLl~~~~~~~-~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   77 (137)
T cd03424           3 DAVAVLPYD-DDG--KVVLVRQYRPP-VGGWLLELPAGLIDPGE-DPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSD   77 (137)
T ss_pred             CEEEEEEEc-CCC--eEEEEEeeecC-CCCEEEEeCCccCCCCC-CHHHHHHHHHHHHHCCCccceEEEeeEecCCcccC
Confidence            456666665 345  78998876542 45789999999999999 99999999999999999988887777644333334


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ..++.|++...... .....+++|+.++.|++++++.+.-
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~  116 (137)
T cd03424          78 ERIHLFLAEDLSPG-EEGLLDEGEDIEVVLVPLDEALELL  116 (137)
T ss_pred             ccEEEEEEEccccc-ccCCCCCCCeeEEEEecHHHHHHHH
Confidence            45667777665432 1135677899999999999998653

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.1e-18  Score=134.20  Aligned_cols=110  Identities=24%  Similarity=0.206  Sum_probs=77.0

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCc--ceEEEEeCCcccC
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSL--VNVVTILDPIFTK  131 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~--~~~lg~l~~~~~~  131 (245)
                      +|.+++++ .+|  +|||++|+..+..++|.|+|| ||+++.|| ++ +||+||++||||+++..  +..++.+..... 
T Consensus         2 ~v~v~~~~-~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE-~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-   75 (127)
T cd04693           2 VVHVCIFN-SKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAGE-TS-TAAEREVKEELGLELDFSELRPLFRYFFEAE-   75 (127)
T ss_pred             eEEEEEEe-CCC--eEEEEEccCCCCCCCCcccccCCCcCCCCC-CH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC-
Confidence            45666666 355  899999998776789999998 99999999 89 99999999999998763  333444322111 


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                       +.....+ +..... .....++++|+.++.|++++++.+.-
T Consensus        76 -~~~~~~~-~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04693          76 -GFDDYYL-FYADVE-IGKLILQKEEVDEVKFVSKDEIDGLI  114 (127)
T ss_pred             -CeEEEEE-EEecCc-ccccccCHHHhhhEEEeCHHHHHHHH
Confidence             2222212 222211 22345677899999999999997754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=8.9e-18  Score=129.96  Aligned_cols=110  Identities=25%  Similarity=0.274  Sum_probs=77.0

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCcccC-
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIFTK-  131 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~~~-  131 (245)
                      +|.+++..  +|  +|||+||... +.++|.|+||||++++|| ++.+||+||++||||+.+.  .+.+++.+...... 
T Consensus         2 ~v~~vi~~--~~--~vLL~~r~~~-~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~   75 (120)
T cd04683           2 AVYVLLRR--DD--EVLLQRRANT-GYMDGQWALPAGHLEKGE-DAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI   75 (120)
T ss_pred             cEEEEEEE--CC--EEEEEEccCC-CCCCCeEeCCccccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC
Confidence            45555554  45  8999999865 356899999999999999 9999999999999999876  56666665443322 


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .......|.+..... . ....+++|+.++.|+|++++...
T Consensus        76 ~~~~~~~f~~~~~~~-~-~~~~~~~e~~~~~W~~~~~l~~~  114 (120)
T cd04683          76 ESRIGLFFTVRRWSG-E-PRNCEPDKCAELRWFPLDALPDD  114 (120)
T ss_pred             ceEEEEEEEEEeecC-c-cccCCCCcEeeEEEEchHHCcch
Confidence            222222333333221 1 11245689999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.76  E-value=9.3e-18  Score=137.36  Aligned_cols=113  Identities=14%  Similarity=0.150  Sum_probs=80.2

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCccc
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIFT  130 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~~  130 (245)
                      ..+|.+++.+ .++  +|||+||+..  +.+|.|+||||++|.|| |+++||+||++|||||.+.  ...+++.....+.
T Consensus        17 ~~~v~~vI~~-~~g--~VLL~kR~~~--~~~g~W~lPGG~VE~GE-t~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~   90 (159)
T PRK15434         17 LISLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD   90 (159)
T ss_pred             eEEEEEEEEC-CCC--EEEEEEccCC--CCCCcEECCceecCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEeecc
Confidence            3566666665 345  8999999853  67899999999999999 9999999999999999864  2355554333221


Q ss_pred             C--------CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          131 K--------NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       131 ~--------~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      .        ..+.+..|.+.+..   ....++++|+.++.|++++++.....
T Consensus        91 ~~~~~~~~~~~~i~~~f~~~~~~---g~~~~~~~E~~~~~W~~~~el~~~~~  139 (159)
T PRK15434         91 DNFSGTDFTTHYVVLGFRLRVAE---EDLLLPDEQHDDYRWLTPDALLASDN  139 (159)
T ss_pred             cccCCCccceEEEEEEEEEEecC---CcccCChHHeeEEEEEeHHHhhhccc
Confidence            1        12344445555443   22345667999999999999987543

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.76  E-value=9.5e-18  Score=133.90  Aligned_cols=113  Identities=19%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE-EeCC-----c
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT-ILDP-----I  128 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg-~l~~-----~  128 (245)
                      +|++.++.. ++  +|||+||+..++.++|.|++|||++|+|| |+.+||+||++|||||.+....+.. .+..     .
T Consensus         5 ~~~~~ii~~-~~--~vLl~~R~~~~~~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (141)
T PRK15472          5 TIVCPLIQN-DG--AYLLCKMADDRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLLLTEITPWTFRDDIRTKT   80 (141)
T ss_pred             eEEEEEEec-CC--EEEEEEecccCCCCCCceeCCcccCCCCC-CHHHHHHHHHHHHHCCceeeeeeccccccccceeEE
Confidence            344444442 45  89999998877789999999999999999 9999999999999999764322111 1100     0


Q ss_pred             c-cCC-ceEEEE-EEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          129 F-TKN-GIIVVP-VIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       129 ~-~~~-~~~v~~-~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      + ... ...... +++..... ...+.+ .+|+.++.|+++++|.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~E~~~~~w~~~~el~~l~  126 (141)
T PRK15472         81 YADGRKEEIYMIYLIFDCVSA-NRDVKI-NEEFQDYAWVKPEDLVHYD  126 (141)
T ss_pred             ecCCCceeEEEEEEEEEeecC-CCcccC-ChhhheEEEccHHHhcccc
Confidence            1 111 111111 12222211 122233 3799999999999997643

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.3e-17  Score=130.55  Aligned_cols=112  Identities=25%  Similarity=0.265  Sum_probs=78.0

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .+|.+++++ .++  +|||++|...   ++|.|+||||++|.|| |+.+||+||++||||+.......++..........
T Consensus         3 ~~~~~~v~~-~~~--~vLl~~r~~~---~~~~w~~PGG~ve~gE-t~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   75 (127)
T cd04670           3 VGVGGLVLN-EKN--EVLVVQERNK---TPNGWKLPGGLVDPGE-DIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFG   75 (127)
T ss_pred             eEEEEEEEc-CCC--eEEEEEccCC---CCCcEECCCccCCCCC-CHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcC
Confidence            445555565 345  7999887653   6799999999999999 99999999999999999876666654332211122


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .....|++.+... ......+++|+.++.|++++++.+.+
T Consensus        76 ~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04670          76 KSDLYFICRLKPL-SFDINFDTSEIAAAKWMPLEEYISQP  114 (127)
T ss_pred             ceeEEEEEEEccC-cCcCCCChhhhheeEEEcHHHHhcch
Confidence            2222344444321 22344677899999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.4e-17  Score=130.53  Aligned_cols=114  Identities=25%  Similarity=0.275  Sum_probs=83.7

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-  131 (245)
                      +.+|.++|++ .+|  +|||++|...  +.+|.|.+|||+++.|| ++.+||.||++||||+++..+..++........ 
T Consensus         2 ~~~v~~ii~~-~~~--~iLl~~r~~~--~~~~~w~~PGG~ve~gE-t~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~   75 (129)
T cd04678           2 RVGVGVFVLN-PKG--KVLLGKRKGS--HGAGTWALPGGHLEFGE-SFEECAAREVLEETGLHIENVQFLTVTNDVFEEE   75 (129)
T ss_pred             ceEEEEEEEC-CCC--eEEEEeccCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCC
Confidence            4567777776 345  8999999864  56899999999999999 999999999999999999888877766543322 


Q ss_pred             -CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          132 -NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       ..+....|.+............+++|+.++.|++++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          76 GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence             22333445555543211111126788999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.75  E-value=3e-17  Score=132.17  Aligned_cols=113  Identities=25%  Similarity=0.318  Sum_probs=81.4

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-  131 (245)
                      +.+|.+++++  ++  +|||+||...  ...|.|++|||++|.|| ++.+||+||++||||+++...++++..+..... 
T Consensus         9 ~~~v~~vi~~--~~--~vLL~rr~~~--~~~g~W~lPGG~ve~gE-s~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~   81 (144)
T PLN02325          9 RVAVVVFLLK--GN--SVLLGRRRSS--IGDSTFALPGGHLEFGE-SFEECAAREVKEETGLEIEKIELLTVTNNVFLEE   81 (144)
T ss_pred             eEEEEEEEEc--CC--EEEEEEecCC--CCCCeEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence            4556555554  35  8999999875  45689999999999999 999999999999999999999988887554311 


Q ss_pred             ---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          132 ---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                         ..+....|.+...+........+++|+.++.|+++++|...
T Consensus        82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325         82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP  125 (144)
T ss_pred             CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence               12233334454443221122346677889999999998753

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.75  E-value=2e-17  Score=133.15  Aligned_cols=111  Identities=28%  Similarity=0.361  Sum_probs=81.6

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc----
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF----  129 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~----  129 (245)
                      .+|.+++++ .++  +|||+||+...    |.|++|||++|+|| ++.+||+||++||||+.+....+++......    
T Consensus         4 ~~v~~ii~~-~~~--~vLL~~r~~~~----~~W~~PgG~~e~gE-~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~   75 (147)
T cd03671           4 PNVGVVLFN-EDG--KVFVGRRIDTP----GAWQFPQGGIDEGE-DPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDL   75 (147)
T ss_pred             ceEEEEEEe-CCC--EEEEEEEcCCC----CCEECCcCCCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeC
Confidence            456666666 345  89999998762    89999999999999 9999999999999999988888887653211    


Q ss_pred             c-----------CCceEEEEEEEEeCCC-CCCCCCC-CcccceeEEEEcccccccc
Q 025996          130 T-----------KNGIIVVPVIGILPDR-NSFIPAP-NTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~-----------~~~~~v~~~v~~~~~~-~~~~~~~-~~~Ev~~v~wvpl~el~~~  172 (245)
                      .           ..+..++.|++.+... ....+.. +++|+.++.|+|++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~  131 (147)
T cd03671          76 PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL  131 (147)
T ss_pred             hhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence            0           1133456666666541 1222223 2579999999999999874

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.1e-17  Score=139.31  Aligned_cols=122  Identities=24%  Similarity=0.321  Sum_probs=88.4

Q ss_pred             CCCCCceEEEEEEEE-cCCCcEEEEEEEeCCCCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce---EE
Q 025996           48 SSTKKRAAVLVCLFE-GNDGDLRVFLTKRSSNLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPSLVN---VV  122 (245)
Q Consensus        48 ~~~~r~aaV~v~l~~-~~~g~~~vLL~rR~~~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~---~l  122 (245)
                      ..+..+.+|.|.++. +.+++.+|+++||+..+..+||+| .+|||++++|| ++.+||+||++|||||+...++   .+
T Consensus        27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE-~~~~aA~REl~EE~Gl~~~~~~~l~~~  105 (180)
T cd03676          27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGE-GPEETLVKECDEEAGLPEDLVRQLKPV  105 (180)
T ss_pred             cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCC-CHHHHHHHHHHHHhCCCHHHHhhceec
Confidence            347788888875442 233246999999999998999999 59999999999 9999999999999999877643   34


Q ss_pred             EEeCCccc--C---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          123 TILDPIFT--K---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       123 g~l~~~~~--~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      +.+...+.  .   ....++.|.+.+..  ...+.++++|+.++.|++++++.+.
T Consensus       106 g~~~~~~~~~~~~~~~e~~~~f~~~~~~--~~~~~~~~~Ev~~~~~~~~~el~~~  158 (180)
T cd03676         106 GVVSYLREGEAGGLQPEVEYVYDLELPP--DFIPAPQDGEVESFRLLTIDEVLRA  158 (180)
T ss_pred             cEEEEEEEcCCCcEeeeEEEEEEEEcCC--CCeeCCCCCcEeEEEEECHHHHHHH
Confidence            43332221  1   12334445544432  2234568899999999999999864

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.75  E-value=9.7e-18  Score=132.66  Aligned_cols=106  Identities=17%  Similarity=0.152  Sum_probs=81.7

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI  134 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  134 (245)
                      +|++++++ .++  +|||++|...   .+|.|++|||+++.|| ++++||+||++|||||.+..+.+++.......  ..
T Consensus         2 ~v~i~l~~-~~~--~vLL~~r~~~---~~~~w~lPgG~ie~gE-t~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~   72 (131)
T cd03429           2 AVIVLVID-GGD--RILLARQPRF---PPGMYSLLAGFVEPGE-SLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP--SS   72 (131)
T ss_pred             eEEEEEEe-CCC--EEEEEEecCC---CCCcCcCCcccccCCC-CHHHHHhhhhhhccCceeeeeEEEeecCCCCC--ce
Confidence            46666665 334  8999998753   3789999999999999 99999999999999999988888876533222  33


Q ss_pred             EEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          135 IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       135 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .+..|++.+..   .....+++|+.++.|+|++++.+.
T Consensus        73 ~~~~f~~~~~~---~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          73 LMLGFTAEADS---GEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEEEEEEcC---CcccCCchhhhccEeecHHHHhhc
Confidence            45556666653   234467789999999999999875

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.7e-17  Score=133.52  Aligned_cols=115  Identities=23%  Similarity=0.257  Sum_probs=81.7

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc----eEEEEeCCcc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV----NVVTILDPIF  129 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~----~~lg~l~~~~  129 (245)
                      ++|.+++++ .++  +|||+||+..+..++|.|++|||+++++| ++.+||+||++||+|+.+...    ++++.....+
T Consensus         2 ~~v~viv~~-~~~--~vLl~rr~~~~~~~~g~w~~PgG~v~~~E-~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~   77 (143)
T cd04694           2 VGVAVLLQS-SDQ--KLLLTRRASSLRIFPNVWVPPGGHVELGE-NLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVY   77 (143)
T ss_pred             cEEEEEEEc-CCC--EEEEEEECCCCCCCCCeEECcccccCCCC-CHHHHHHHHHHHHHCCCccccccceeEEeeecccc
Confidence            456666666 355  89999999876689999999999999999 999999999999999987653    5565543322


Q ss_pred             c------CC-ceEEEEEEEEeCCC----CCCCCCCCcccceeEEEEcccccccc
Q 025996          130 T------KN-GIIVVPVIGILPDR----NSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~------~~-~~~v~~~v~~~~~~----~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .      .. ...+..|++.....    ....+.++++|++++.|++++++.+-
T Consensus        78 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~  131 (143)
T cd04694          78 PPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             ccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence            1      11 22333443332211    11234567899999999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.75  E-value=1.7e-17  Score=129.57  Aligned_cols=110  Identities=25%  Similarity=0.279  Sum_probs=78.6

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc---
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT---  130 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~---  130 (245)
                      +|.++++.. .+++.+|||++|...     |.|+||||++++|| ++.+||.||++||||+.+..+..++.+.....   
T Consensus         3 ~a~~ii~~~-~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   75 (131)
T cd03673           3 AAGGVVFRG-SDGGIEVLLIHRPRG-----DDWSLPKGKLEPGE-TPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSG   75 (131)
T ss_pred             eEEEEEEEc-cCCCeEEEEEEcCCC-----CcccCCCCccCCCC-CHHHHHHHHHhhhhCCceEecceEEEEEEeccCCC
Confidence            344443333 344459999998754     79999999999999 99999999999999999888877776543332   


Q ss_pred             -CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 -KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 -~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       .....++.|.+..... .... .+.+|+.++.|+|++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~  116 (131)
T cd03673          76 KRVHKTVHWWLMRALGG-EFTP-QPDEEVDEVRWLPPDEARDR  116 (131)
T ss_pred             CCcceEEEEEEEEEcCC-Cccc-CCCCcEEEEEEcCHHHHHHH
Confidence             2234455555555432 1111 25689999999999998764

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2e-17  Score=127.80  Aligned_cols=109  Identities=26%  Similarity=0.328  Sum_probs=80.1

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC---
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK---  131 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~---  131 (245)
                      +|.+++++  ++  +|||++|...  .++|.|.||||++++|| ++++||.||++||||+++.....++.+......   
T Consensus         2 ~v~~ii~~--~~--~vLl~~r~~~--~~~~~w~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   74 (122)
T cd04673           2 AVGAVVFR--GG--RVLLVRRANP--PDAGLWSFPGGKVELGE-TLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAG   74 (122)
T ss_pred             cEEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCC
Confidence            34455555  34  7999999864  57899999999999999 999999999999999998877777776554321   


Q ss_pred             ---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          132 ---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       132 ---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                         ....++.|.+.....   .. .+.+|+.++.|++++++.+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~-~~~~E~~~~~w~~~~el~~~~~  116 (122)
T cd04673          75 RVEFHYVLIDFLCRYLGG---EP-VAGDDALDARWVPLDELAALSL  116 (122)
T ss_pred             ccceEEEEEEEEEEeCCC---cc-cCCcccceeEEECHHHHhhCcC
Confidence               123444455554332   22 3458999999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.74  E-value=2.3e-17  Score=137.58  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=83.9

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI  128 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~  128 (245)
                      +.++.++.+++++ .+|  +|||++|+.....+||.| .+|||++++|| |+++||+||++|||||....+..++.+...
T Consensus        34 ~~~h~~~~v~v~~-~~g--~iLL~~R~~~~~~~pg~~~~~pGG~ve~GE-s~~eAA~REL~EEtGl~~~~~~~~~~~~~~  109 (180)
T PRK15393         34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQAGE-QLLESARREAEEELGIAGVPFAEHGQFYFE  109 (180)
T ss_pred             CCceEEEEEEEEC-CCC--eEEEEEeCCCCCCCCCcccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCccceeceeEEec
Confidence            5677888887776 455  899999988766778988 58999999999 999999999999999987766666554221


Q ss_pred             ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..........|.+...    ....++++|+.++.|++++++.+.
T Consensus       110 ~~~~~~~~~~f~~~~~----~~~~~~~~E~~~~~W~~~~el~~~  149 (180)
T PRK15393        110 DENCRVWGALFSCVSH----GPFALQEEEVSEVCWMTPEEITAR  149 (180)
T ss_pred             CCCceEEEEEEEEEeC----CCCCCChHHeeEEEECCHHHHhhh
Confidence            1111122223333322    224567899999999999999864

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.74  E-value=3.1e-17  Score=131.57  Aligned_cols=113  Identities=19%  Similarity=0.160  Sum_probs=80.8

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-C
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-N  132 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-~  132 (245)
                      .||.+++++ .++  +|||++|...  ..+|.|+||||++++|| ++++||+||++||||+++..+.+++.+...... .
T Consensus        14 ~av~~vv~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   87 (142)
T cd04700          14 RAAGAVILN-ERN--DVLLVQEKGG--PKKGLWHIPSGAVEDGE-FPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV   87 (142)
T ss_pred             eeEEEEEEe-CCC--cEEEEEEcCC--CCCCeEECCceecCCCC-CHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCc
Confidence            445555565 345  6888887654  46799999999999999 999999999999999999888888766432222 2


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      ....+.|++..... ...+. ..+|+.++.|+|++++.+...
T Consensus        88 ~~~~~~f~~~~~~~-~~~~~-~~~E~~~~~w~~~~el~~~~~  127 (142)
T cd04700          88 LVLRHVWLAEPEGQ-TLAPK-FTDEIAEASFFSREDVAQLYA  127 (142)
T ss_pred             EEEEEEEEEEecCC-ccccC-CCCCEEEEEEECHHHhhhccc
Confidence            23345566665432 22222 237999999999999987554

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.2e-17  Score=126.48  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=79.2

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC-cceEEEEeCCcccCCc
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS-LVNVVTILDPIFTKNG  133 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~-~~~~lg~l~~~~~~~~  133 (245)
                      +|.+++++ .+|  ++||++|+..     +.|.||||+++.|| ++++||+||++||||+.+. ...+++.+........
T Consensus         2 ~~~~~i~~-~~~--~vLL~~r~~~-----~~w~~PgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~   72 (120)
T cd04680           2 GARAVVTD-ADG--RVLLVRHTYG-----PGWYLPGGGLERGE-TFAEAARRELLEELGIRLAVVAELLGVYYHSASGSW   72 (120)
T ss_pred             ceEEEEEC-CCC--eEEEEEECCC-----CcEeCCCCcCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEecCCCCCc
Confidence            34555565 355  8999998754     38999999999999 9999999999999999998 8888887765543333


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..++.|.+.....   ....+.+|+.++.|+|++++.+.
T Consensus        73 ~~~~~f~~~~~~~---~~~~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          73 DHVIVFRARADTQ---PVIRPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             eEEEEEEecccCC---CccCCcccEEEEEEECHHHCccc
Confidence            4455555544432   11356689999999999999763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.5e-17  Score=129.24  Aligned_cols=109  Identities=28%  Similarity=0.247  Sum_probs=79.8

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCC--cc--cC
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDP--IF--TK  131 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~--~~--~~  131 (245)
                      |.|++++ ..++.+|||+||+..   ++|.|.+|||+++.|| ++.+||+||++|||||.+..+.++.....  .+  ..
T Consensus         4 ~~v~~~~-~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~E-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04664           4 VLVVPYR-LTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGE-SPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD   78 (129)
T ss_pred             EEEEEEE-eCCCCEEEEEEeCCC---CCCcccccCcccCCCC-CHHHHHHHHHHHHHCCChhheEEEeecccccccccCC
Confidence            4444555 212238999999875   7899999999999999 99999999999999999877777776543  11  11


Q ss_pred             --CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          132 --NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 --~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                        ....++.|++.+....   ....++|+.++.|+|++++.+.
T Consensus        79 ~~~~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~  118 (129)
T cd04664          79 NGRVWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAAL  118 (129)
T ss_pred             CceEEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHHH
Confidence              2245666777665421   1235579999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.74  E-value=3.5e-17  Score=127.38  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC----
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK----  131 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~----  131 (245)
                      |..++++  ++  +|||++|...  .++|.|+||||++|.|| ++.+||+||++||||+....+.+++.....+..    
T Consensus         3 ~~~ii~~--~~--~vLl~~~~~~--~~~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   75 (128)
T cd04684           3 AYAVIPR--DG--KLLLIQKNGG--PYEGRWDLPGGGIEPGE-SPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD   75 (128)
T ss_pred             eEEEEEe--CC--EEEEEEccCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC
Confidence            4444454  34  8999999876  37899999999999999 999999999999999998888877776543211    


Q ss_pred             --CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 --NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 --~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                        .....+.|.+....... ....+.+|+.++.|+|++++....
T Consensus        76 ~~~~~~~~~f~~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~~~  118 (128)
T cd04684          76 YDAHHLCVFYDARVVGGAL-PVQEPGEDSHGAAWLPLDEAIERL  118 (128)
T ss_pred             eeccEEEEEEEEEEecCcc-ccCCCCCCceeeEEECHHHhhccC
Confidence              12334445555543211 013455788999999999997543

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.73  E-value=2e-17  Score=135.09  Aligned_cols=114  Identities=21%  Similarity=0.195  Sum_probs=83.2

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcce--EEEEeC
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVN--VVTILD  126 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~--~lg~l~  126 (245)
                      +..+.+|.+++++ .+|  +|||+||+..+..+||.|++| ||+++.|| +  +||+||++|||||++..+.  .++...
T Consensus        24 g~~h~~v~v~v~~-~~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-~--eaa~REl~EE~Gl~~~~~~l~~~~~~~   97 (158)
T TIGR02150        24 TPLHRAFSVFLFN-EEG--QLLLQRRALSKITWPGVWTNSCCSHPLPGE-L--EAAIRRLREELGIPADDVPLTVLPRFS   97 (158)
T ss_pred             CCeEEEEEEEEEc-CCC--eEEEEeccCCCcCCCCCccccccCCCCccc-H--HHHHHHHHHHHCCCccccceEEcceEE
Confidence            6788888888887 456  899999999887899999997 89999999 4  9999999999999887654  333222


Q ss_pred             Cccc-CCc--eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          127 PIFT-KNG--IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       127 ~~~~-~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .... ..+  ...+.|.+....    .+.++++|++++.|++++++.+.-
T Consensus        98 ~~~~~~~g~~~~~~~f~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~~  143 (158)
T TIGR02150        98 YRARDAWGEHELCPVFFARAPV----PLNPNPEEVAEYRWVSLEELKEIL  143 (158)
T ss_pred             EEEecCCCcEEEEEEEEEecCC----cccCChhHeeeEEEeCHHHHHHHH
Confidence            1111 112  223334333321    345677899999999999987643

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.73  E-value=2.2e-17  Score=135.68  Aligned_cols=114  Identities=20%  Similarity=0.158  Sum_probs=83.3

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcceEE-EEeCCc-
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVNVV-TILDPI-  128 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~l-g~l~~~-  128 (245)
                      .+.+|.+++++ .++  +|||+||+..+..+||.|++| ||++++|| ++++||+||++|||||.+....++ +.+... 
T Consensus        29 ~~~~v~v~i~~-~~~--~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GE-t~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~  104 (165)
T cd02885          29 LHRAFSVFLFN-SKG--RLLLQRRALSKYTFPGLWTNTCCSHPLPGE-GVKDAAQRRLREELGITGDLLELVLPRFRYRA  104 (165)
T ss_pred             ceeEEEEEEEc-CCC--cEEEEeccCCCccCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccchhhccceEEEEE
Confidence            37888887777 455  799999998877899999996 89999999 999999999999999998766654 332211 


Q ss_pred             -ccC---CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          129 -FTK---NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       129 -~~~---~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                       ...   .....+.|.+....    ...++++|+.++.|+|++++.+..
T Consensus       105 ~~~~~~~~~~i~~~f~~~~~~----~~~~~~~Ev~~~~w~~~~el~~~~  149 (165)
T cd02885         105 PDDGGLVEHEIDHVFFARADV----TLIPNPDEVSEYRWVSLEDLKELV  149 (165)
T ss_pred             EcCCCceeeEEEEEEEEEeCC----CCCCCccceeEEEEECHHHHHHHH
Confidence             111   11122334444322    234577899999999999997754

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.72  E-value=3.6e-17  Score=128.17  Aligned_cols=110  Identities=23%  Similarity=0.202  Sum_probs=79.5

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc----
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI----  128 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~----  128 (245)
                      +++.+|++.. .+++.++||++|+.      |.|+||||++++|| |+.+||+||++||||+....+..++.+...    
T Consensus         3 ~~~g~vi~~~-~~~~~~vLl~~~~~------~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   74 (130)
T cd03428           3 RSAGAIIYRR-LNNEIEYLLLQASY------GHWDFPKGHVEPGE-DDLEAALRETEEETGITAEQLFIVLGFKETLNYQ   74 (130)
T ss_pred             eEEEEEEEEe-cCCCceEEEEEccC------CcCcCCcCCCCCCC-CHHHHHHHHHHHHHCCChhhhhhhccceeEEEcc
Confidence            3444444444 45566899999885      78999999999999 999999999999999998877765322211    


Q ss_pred             ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .......++.|++.+...  ..+.++ +|+.++.|++++++.+..
T Consensus        75 ~~~~~~~~~~f~~~~~~~--~~~~~~-~E~~~~~W~~~~e~~~~~  116 (130)
T cd03428          75 VRGKLKTVTYFLAELRPD--VEVKLS-EEHQDYRWLPYEEALKLL  116 (130)
T ss_pred             ccCcceEEEEEEEEeCCC--Cccccc-cceeeEEeecHHHHHHHc
Confidence            122345667777777632  223445 899999999999987643

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1.1e-16  Score=125.55  Aligned_cols=104  Identities=20%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceE
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGII  135 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~  135 (245)
                      |.+++++ .++  +|||++|...  .+++.|+||||++|.|| ++.+||.||++||||+++...++++.....   ....
T Consensus         3 ~~~vv~~-~~~--~vLl~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~   73 (123)
T cd04671           3 VAAVILN-NQG--EVLLIQEAKR--SCRGKWYLPAGRMEPGE-TIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWF   73 (123)
T ss_pred             EEEEEEc-CCC--EEEEEEecCC--CCCCeEECceeecCCCC-CHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEE
Confidence            4444454 345  8999999864  56899999999999999 999999999999999999888777654321   2233


Q ss_pred             EEEEEEEeCCCCCCCC-CCCcccceeEEEEccccc
Q 025996          136 VVPVIGILPDRNSFIP-APNTAEVDAIFDAPLEMF  169 (245)
Q Consensus       136 v~~~v~~~~~~~~~~~-~~~~~Ev~~v~wvpl~el  169 (245)
                      ...|.+..... .... ..+.+|+.++.|+|++++
T Consensus        74 ~~~f~a~~~~g-~~~~~~~~~~e~~~~~W~~~~el  107 (123)
T cd04671          74 RFVFTGNITGG-DLKTEKEADSESLQARWYSNKDL  107 (123)
T ss_pred             EEEEEEEEeCC-eEccCCCCCcceEEEEEECHHHC
Confidence            34454544332 1111 123467889999999999

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.72  E-value=1.7e-17  Score=129.54  Aligned_cols=116  Identities=33%  Similarity=0.421  Sum_probs=86.8

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      +.+|.+++++ .++  +|||++|......++|.|.+|||+++.+| |+.+||+||++||||++......++.........
T Consensus         2 ~~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E-~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~   77 (134)
T PF00293_consen    2 RRAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPGE-SPEEAARRELKEETGLDVSPLELLGLFSYPSPSG   77 (134)
T ss_dssp             EEEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTTS-HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred             CCEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcCC-chhhhHHhhhhhcccceecccccceeeeecccCC
Confidence            5677777777 455  89999999875458899999999999999 9999999999999999986555555443332221


Q ss_pred             ---ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          133 ---GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       133 ---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                         +..++.|++.+.... .....+..|+.++.|++++++.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~  120 (134)
T PF00293_consen   78 DPEGEIVIFFIAELPSEQ-SEIQPQDEEISEVKWVPPDELLELL  120 (134)
T ss_dssp             ESSEEEEEEEEEEEEEEE-SECHTTTTTEEEEEEEEHHHHHHHH
T ss_pred             CcccEEEEEEEEEEeCCc-cccCCCCccEEEEEEEEHHHhhhch
Confidence               356666666665432 1234455599999999999998754

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.72  E-value=1.1e-16  Score=129.05  Aligned_cols=113  Identities=24%  Similarity=0.270  Sum_probs=82.1

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc-
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT-  130 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~-  130 (245)
                      ...+|.+++..  ++  +|||+||...  ++.|.|++|||++|.|| ++++||+||++|||||++..+++++.++.... 
T Consensus         9 p~~~v~~~i~~--~~--~iLLvrR~~~--p~~g~WalPGG~ve~GE-t~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd   81 (145)
T COG1051           9 PLVAVGALIVR--NG--RILLVRRANE--PGAGYWALPGGFVEIGE-TLEEAARRELKEETGLRVRVLELLAVFDDPGRD   81 (145)
T ss_pred             cceeeeEEEEe--CC--EEEEEEecCC--CCCCcEeCCCccCCCCC-CHHHHHHHHHHHHhCCcccceeEEEEecCCCCC
Confidence            45566665554  34  8999999987  88899999999999999 99999999999999999988998888876543 


Q ss_pred             CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 ~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..+.++..++......... ...+.++...+.|++++++...
T Consensus        82 ~r~~~v~~~~~~~~~~g~~-~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          82 PRGHHVSFLFFAAEPEGEL-LAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             CceeEEEEEEEEEecCCCc-ccCChhhHhhcceecHhHcccc
Confidence            2333333322222211111 1233358889999999998864

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1e-16  Score=125.20  Aligned_cols=107  Identities=22%  Similarity=0.287  Sum_probs=75.2

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc-----
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF-----  129 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~-----  129 (245)
                      +|.+++++ .+|  +|||+||..    ++|.|+||||+++.|| |+.+||+||++||||+++..+.+++.....+     
T Consensus         4 ~v~~~i~~-~~~--~iLL~r~~~----~~~~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   75 (125)
T cd04696           4 TVGALIYA-PDG--RILLVRTTK----WRGLWGVPGGKVEWGE-TLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFH   75 (125)
T ss_pred             EEEEEEEC-CCC--CEEEEEccC----CCCcEeCCceeccCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCC
Confidence            44555555 355  799998753    4689999999999999 9999999999999999988777665433222     


Q ss_pred             cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          130 TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       130 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ....+.+..|.+.....   ....+ +|+.++.|+|++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~-~e~~~~~W~~~~el~~~~  115 (125)
T cd04696          76 KPAHFVLFDFFARTDGT---EVTPN-EEIVEWEWVTPEEALDYP  115 (125)
T ss_pred             CccEEEEEEEEEEecCC---cccCC-cccceeEEECHHHHhcCC
Confidence            11223334455554321   22333 789999999999997754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.3e-16  Score=125.26  Aligned_cols=108  Identities=26%  Similarity=0.298  Sum_probs=75.5

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc--cc
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI--FT  130 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~--~~  130 (245)
                      ..+|.+++++ .++  +|||++|...     |.|+||||++++|| ++.+||+||++||||+.+.....++.+...  +.
T Consensus         7 ~~~~~~~v~~-~~~--~vLL~~r~~~-----~~w~~PgG~v~~gE-t~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~   77 (132)
T cd04677           7 LVGAGVILLN-EQG--EVLLQKRSDT-----GDWGLPGGAMELGE-SLEETARRELKEETGLEVEELELLGVYSGKEFYV   77 (132)
T ss_pred             ccceEEEEEe-CCC--CEEEEEecCC-----CcEECCeeecCCCC-CHHHHHHHHHHHHhCCeeeeeEEEEEecCCceee
Confidence            4556666666 345  7999998754     78999999999999 999999999999999999888777655321  11


Q ss_pred             --CCc---eEEE-EEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 --KNG---IIVV-PVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 --~~~---~~v~-~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                        ..+   ..+. .+++...   ...+..+.+|+.++.|+|++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~W~~~~e~~~~  122 (132)
T cd04677          78 KPNGDDEQYIVTLYYVTKVF---GGKLVPDGDETLELKFFSLDELPEL  122 (132)
T ss_pred             cCCCCcEEEEEEEEEEEecc---CCcccCCCCceeeEEEEChhHCccc
Confidence              111   1222 2222222   1222456689999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.71  E-value=1.1e-16  Score=133.85  Aligned_cols=116  Identities=20%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcce-EEEEeCC
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVN-VVTILDP  127 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~-~lg~l~~  127 (245)
                      +..+.||.+++++ .+|  +|||+||+..+..+||.|.+| ||++++|| ++++||+||++|||||++..+. +++.+..
T Consensus        31 ~~~h~av~v~i~~-~~g--~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~  106 (184)
T PRK03759         31 TPLHLAFSCYLFD-ADG--RLLVTRRALSKKTWPGVWTNSCCGHPQPGE-SLEDAVIRRCREELGVEITDLELVLPDFRY  106 (184)
T ss_pred             CCeeeEEEEEEEc-CCC--eEEEEEccCCCCCCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccccccccceEEE
Confidence            4567788887776 355  899999988776889999987 89999999 9999999999999999886443 2332221


Q ss_pred             c-ccCCc----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          128 I-FTKNG----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       128 ~-~~~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      . ....+    ...+.|++....    .+.++++|+.++.|+|++++.+.-
T Consensus       107 ~~~~~~~~~~~~~~~vf~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~i  153 (184)
T PRK03759        107 RATDPNGIVENEVCPVFAARVTS----ALQPNPDEVMDYQWVDPADLLRAV  153 (184)
T ss_pred             EEecCCCceeeEEEEEEEEEECC----CCCCChhHeeeEEEECHHHHHHHH
Confidence            1 01111    233455555542    245678899999999999997743

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=3.9e-17  Score=128.87  Aligned_cols=100  Identities=21%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             EEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC---CceEEEEEEEEeC
Q 025996           68 LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK---NGIIVVPVIGILP  144 (245)
Q Consensus        68 ~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~---~~~~v~~~v~~~~  144 (245)
                      .+|||.+|...   ++|.|++|||++++|| |+.+||+||++||||+.+..+...+.+..+++.   ....+..|++.+.
T Consensus        14 ~~vLl~~r~~~---~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   89 (131)
T cd04695          14 TKVLLLKRVKT---LGGFWCHVAGGVEAGE-TAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVP   89 (131)
T ss_pred             CEEEEEEecCC---CCCcEECCcccccCCC-CHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEec
Confidence            38999999864   6799999999999999 999999999999999988755332222222221   1233445555554


Q ss_pred             CCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          145 DRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       145 ~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      ...  ...++ +|+.++.|+|++++.+...
T Consensus        90 ~~~--~~~~~-~E~~~~~W~~~~e~~~~~~  116 (131)
T cd04695          90 PHQ--EVVLN-HEHTEYRWCSFAEALELAP  116 (131)
T ss_pred             CCC--ccccC-chhcccEecCHHHHHHhcC
Confidence            321  12233 7999999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.71  E-value=1.7e-16  Score=132.81  Aligned_cols=113  Identities=18%  Similarity=0.149  Sum_probs=86.3

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      ..+|+|+.+. +++  +|||+|+... +.+++.|+||||.+|+|| ++++||+||++||||+.+..++.++.+....+..
T Consensus        47 ~~~v~v~~~~-~~~--~vlLvrq~r~-~~~~~~~elPaG~ve~gE-~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~  121 (185)
T PRK11762         47 RGAVMIVPIL-DDD--TLLLIREYAA-GTERYELGFPKGLIDPGE-TPLEAANRELKEEVGFGARQLTFLKELSLAPSYF  121 (185)
T ss_pred             CCEEEEEEEe-CCC--EEEEEEeecC-CCCCcEEEccceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEecCCCcc
Confidence            3455555454 345  7999988654 367788999999999999 9999999999999999999999999876655555


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...++.|++.....  .....++.|..++.|+|++++.+.
T Consensus       122 ~~~~~~f~a~~~~~--~~~~~~e~E~i~~~~~~~~e~~~~  159 (185)
T PRK11762        122 SSKMNIVLAEDLYP--ERLEGDEPEPLEVVRWPLADLDEL  159 (185)
T ss_pred             CcEEEEEEEEcccc--ccCCCCCCceeEEEEEcHHHHHHH
Confidence            66777777764432  112346678889999999988663

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.6e-16  Score=126.63  Aligned_cols=110  Identities=21%  Similarity=0.329  Sum_probs=73.9

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE------EeC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT------ILD  126 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg------~l~  126 (245)
                      +.+|.+++++...+  +|||++|..     .|.|++|||++|+|| ++++||.||++||||+.+..+..++      .+.
T Consensus         2 ~~~~~~~v~~~~~~--~vLLv~r~~-----~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   73 (138)
T cd03674           2 HFTASAFVVNPDRG--KVLLTHHRK-----LGSWLQPGGHIDPDE-SLLEAALRELREETGIELLGLRPLSVLVDLDVHP   73 (138)
T ss_pred             cEEEEEEEEeCCCC--eEEEEEEcC-----CCcEECCceecCCCC-CHHHHHHHHHHHHHCCCcccceeccccccceeEe
Confidence            45566666763214  899999875     378999999999999 9999999999999999876655432      111


Q ss_pred             Cc--ccC---Cce-EEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          127 PI--FTK---NGI-IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       127 ~~--~~~---~~~-~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..  ...   ... ....|.+.+... .... ++.+|+.++.|+|++++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~  123 (138)
T cd03674          74 IDGHPKRGVPGHLHLDLRFLAVAPAD-DVAP-PKSDESDAVRWFPLDELASL  123 (138)
T ss_pred             ecCCCCCCCCCcEEEEEEEEEEccCc-cccC-CCCCcccccEEEcHHHhhhc
Confidence            11  110   111 222355554432 1111 36689999999999999754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.70  E-value=2.5e-16  Score=124.18  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC--CceEEEEEEEEeCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK--NGIIVVPVIGILPDR  146 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~--~~~~v~~~v~~~~~~  146 (245)
                      ++||++|...   ..+.|+||||++|+|| ++.+||.||++||||+++....+++.+......  ..+..+.|++.+...
T Consensus        12 ~vLlv~r~~~---~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~   87 (134)
T cd03675          12 RFLLVEEETD---GGLVFNQPAGHLEPGE-SLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEH   87 (134)
T ss_pred             EEEEEEEccC---CCceEECCCccCCCCC-CHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCC
Confidence            7999998764   4579999999999999 999999999999999998877777765433222  223334566666542


Q ss_pred             CCCCCCCCcccceeEEEEccccccccC
Q 025996          147 NSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       147 ~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      . . .....+|+.++.|++++++.+..
T Consensus        88 ~-~-~~~~~~e~~~~~w~~~~el~~~~  112 (134)
T cd03675          88 L-P-DQPLDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             C-C-CCCCCCCceeeEEEeHHHHHhhh
Confidence            1 1 11234689999999999998754

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.70  E-value=3.8e-16  Score=121.50  Aligned_cols=100  Identities=20%  Similarity=0.249  Sum_probs=76.0

Q ss_pred             CCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEe
Q 025996           64 NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        64 ~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      .+|  +|||+||+.. +.++|.|+||||++++|| ++.+||.||++||||+++.....++.+.+.++.....+..|.+..
T Consensus        14 ~~~--~vll~rR~~~-~~~~g~w~~PgG~~~~gE-~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (129)
T PRK10776         14 PNN--EIFITRRAAD-AHMAGKWEFPGGKIEAGE-TPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVES   89 (129)
T ss_pred             CCC--EEEEEEecCC-CCCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEE
Confidence            345  8999999876 468999999999999999 999999999999999987777777776665555545555554433


Q ss_pred             CCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          144 PDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...   .  +.+.|..++.|++++++...
T Consensus        90 ~~~---~--~~~~e~~~~~W~~~~~l~~~  113 (129)
T PRK10776         90 WEG---E--PWGKEGQPGRWVSQVALNAD  113 (129)
T ss_pred             ECC---c--cCCccCCccEEecHHHCccC
Confidence            211   1  23457888999999998753

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=2.2e-16  Score=124.91  Aligned_cols=97  Identities=24%  Similarity=0.227  Sum_probs=73.0

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC--CceEEEEEEEEeCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK--NGIIVVPVIGILPDR  146 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~--~~~~v~~~v~~~~~~  146 (245)
                      +|||++|+..  .++|.|++|||++|.|| ++.+||+||++||||+....+.+++.+......  ....++.|.+.....
T Consensus        13 ~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~   89 (137)
T cd03427          13 KVLLLNRKKG--PGWGGWNGPGGKVEPGE-TPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG   89 (137)
T ss_pred             EEEEEEecCC--CCCCeEeCCceeCCCCC-CHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc
Confidence            8999999976  37899999999999999 999999999999999999888888776543322  233444444433321


Q ss_pred             CCCCCCCCcccceeEEEEcccccccc
Q 025996          147 NSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       147 ~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                         ... +.+|..++.|+|++++.+.
T Consensus        90 ---~~~-~~~e~~~~~W~~~~el~~~  111 (137)
T cd03427          90 ---EPL-KESEEGILDWFDIDDLPLL  111 (137)
T ss_pred             ---ccC-CCCccccceEEcHhhcccc
Confidence               122 3466678999999998754

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=2.5e-16  Score=122.63  Aligned_cols=108  Identities=23%  Similarity=0.227  Sum_probs=72.6

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc-ccC-C
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI-FTK-N  132 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~-~~~-~  132 (245)
                      +|.+++++ ++|  +|||+||......++|.|+||||++++|| ++.+||+||++||||+.+.....++..... .+. .
T Consensus         3 ~v~~vv~~-~~~--~iLl~kr~~~~~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04699           3 AVAALIVK-DVG--RILILKRSKDERTAPGKWELPGGKVEEGE-TFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVY   78 (129)
T ss_pred             eEEEEEEC-CCC--cEEEEEecCCCCCCCCcCcCCccCccCCC-CHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEE
Confidence            34444554 335  79999998875457999999999999999 999999999999999988766654222111 111 1


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL  170 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~  170 (245)
                      ......|.+....  .  ...+++|+.++.|+|++++.
T Consensus        79 ~~~~~~~~~~~~~--~--~~~~~~e~~~~~w~~~~el~  112 (129)
T cd04699          79 NVIYLVFVCEALS--G--AVKLSDEHEEYAWVTLEELA  112 (129)
T ss_pred             EEEEEEEEeeecC--C--cccCChhheEEEEecHHHhh
Confidence            1222223332221  1  12345789999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.69  E-value=2.4e-16  Score=126.75  Aligned_cols=108  Identities=23%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC--CcceEEEEeCC---
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP--SLVNVVTILDP---  127 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~--~~~~~lg~l~~---  127 (245)
                      +.+|.+++++ .+|  +|||++|...    +|.|++|||++|.|| |+.+||+||++|||||.+  ..+.+++....   
T Consensus         7 ~~~v~~vi~~-~~~--~vLl~~r~~~----~~~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   78 (148)
T PRK09438          7 PVSVLVVIYT-PDL--GVLMLQRADD----PDFWQSVTGSLEEGE-TPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEY   78 (148)
T ss_pred             ceEEEEEEEe-CCC--eEEEEEecCC----CCcEeCCcccCCCCC-CHHHHHHHHHHHHhCcCccccceeeccccccccc
Confidence            4567777776 355  7999988643    589999999999999 999999999999999987  44443321100   


Q ss_pred             -cc---------cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          128 -IF---------TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       128 -~~---------~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       ++         .......+.|.+.....  .  .+..+|+.++.|++++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~--~~~~~E~~~~~W~~~~e~~~~  129 (148)
T PRK09438         79 EIFPHWRHRYAPGVTRNTEHWFCLALPHE--R--PVVLTEHLAYQWLDAREAAAL  129 (148)
T ss_pred             ccchhhhhccccccCCceeEEEEEecCCC--C--ccccCcccceeeCCHHHHHHH
Confidence             00         11123445565554332  1  234469999999999998774

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=5.5e-16  Score=120.97  Aligned_cols=96  Identities=19%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc----eEEEEEEEEeC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG----IIVVPVIGILP  144 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~----~~v~~~v~~~~  144 (245)
                      +|||++|...     +.|.+|||++|+|| ++.+||+||++||||++.....+++.+...+...+    ...+.|.+...
T Consensus        13 ~vLlv~~~~~-----~~~~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~   86 (125)
T cd04689          13 KVLLARVIGQ-----PHYFLPGGHVEPGE-TAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESS   86 (125)
T ss_pred             EEEEEEecCC-----CCEECCCCcCCCCC-CHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcc
Confidence            7999998642     68999999999999 99999999999999999988888887754432221    22234444433


Q ss_pred             CCCCCCCCCCcccceeEEEEcccccc
Q 025996          145 DRNSFIPAPNTAEVDAIFDAPLEMFL  170 (245)
Q Consensus       145 ~~~~~~~~~~~~Ev~~v~wvpl~el~  170 (245)
                      .........+.+|+.++.|++++++.
T Consensus        87 ~~~~~~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          87 WLASDGPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             cccccCCccCccceEEEEEccHHHcc
Confidence            22111122345789999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.69  E-value=5.7e-16  Score=122.23  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||++|+.. +.++|.|+||||++|.|| ++.+||.||++||||+.+....+++.....++.....++.|.+.....  
T Consensus        16 ~vLL~~R~~~-~~~~g~w~~PgG~ve~gE-~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   91 (135)
T PRK10546         16 KILLAQRPAH-SDQAGLWEFAGGKVEPGE-SQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFHG--   91 (135)
T ss_pred             EEEEEEccCC-CCCCCcEECCcccCCCCC-CHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEecC--
Confidence            7999999775 368899999999999999 999999999999999998777777766555554444555554443211  


Q ss_pred             CCCCCCcccceeEEEEcccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                         .+...|..++.|++++++.+.
T Consensus        92 ---~~~~~e~~~~~W~~~~el~~~  112 (135)
T PRK10546         92 ---ELQAHEHQALVWCTPEEALRY  112 (135)
T ss_pred             ---cccccccceeEEcCHHHcccC
Confidence               122356788999999988763

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.68  E-value=3.3e-16  Score=126.28  Aligned_cols=107  Identities=21%  Similarity=0.161  Sum_probs=69.5

Q ss_pred             EEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEE
Q 025996           58 VCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVV  137 (245)
Q Consensus        58 v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~  137 (245)
                      +++++.+++  +|||+||...     +.|+||||++|.|| |+.+||+||++||||+.+........+.. ....+..++
T Consensus         6 aii~~~~~~--~vLLvr~~~~-----~~W~lPGG~ve~gE-s~~~AA~REl~EETGl~v~~~~~~~~~~~-~~~~~~~~~   76 (145)
T cd03672           6 AIILNEDLD--KVLLVKGWKS-----KSWSFPKGKINKDE-DDHDCAIREVYEETGFDISKYIDKDDYIE-LIIRGQNVK   76 (145)
T ss_pred             EEEEeCCCC--EEEEEEecCC-----CCEECCCccCCCCc-CHHHHHHHHHHHhhCccceeccccceeee-cccCCcEEE
Confidence            334543234  7999998633     48999999999999 99999999999999998765321111111 111233445


Q ss_pred             EEEEEeCCCCCCCCCC-CcccceeEEEEccccccccCC
Q 025996          138 PVIGILPDRNSFIPAP-NTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       138 ~~v~~~~~~~~~~~~~-~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      .|++..... .....+ +.+|+.++.|+|++++.+...
T Consensus        77 ~f~~~~~~~-~~~~~~~~~~E~~~~~Wv~~~el~~~~~  113 (145)
T cd03672          77 LYIVPGVPE-DTPFEPKTRKEISKIEWFDIKDLPTKKN  113 (145)
T ss_pred             EEEEecCCC-CcccCcCChhhhheEEEeeHHHhhhhhh
Confidence            555433221 111122 347999999999999987654

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=6.2e-16  Score=121.11  Aligned_cols=100  Identities=17%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc-eEEEEeCCcccC----CceEEEEE
Q 025996           65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV-NVVTILDPIFTK----NGIIVVPV  139 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~-~~lg~l~~~~~~----~~~~v~~~  139 (245)
                      ++..+|||++|...     +.|+||||++|.|| ++.+||+||++||||+..... .+++.+......    ....++.|
T Consensus        12 ~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E-~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f   85 (122)
T cd04666          12 GGEVEVLLVTSRRT-----GRWIVPKGGPEKDE-SPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVF   85 (122)
T ss_pred             CCceEEEEEEecCC-----CeEECCCCCcCCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEE
Confidence            44568999998643     78999999999999 999999999999999998777 788887654432    13455555


Q ss_pred             EEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          140 IGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       140 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .+.+....  . .....|+.++.|++++++.+.-
T Consensus        86 ~~~~~~~~--~-~~~~~e~~~~~W~~~~ea~~~~  116 (122)
T cd04666          86 PLEVTEEL--D-EWPEMHQRKRKWFSPEEAALLV  116 (122)
T ss_pred             EEEEeccc--c-CCcccCceEEEEecHHHHHHhc
Confidence            55554321  1 1233577899999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.68  E-value=6.9e-16  Score=125.79  Aligned_cols=113  Identities=20%  Similarity=0.208  Sum_probs=80.3

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF--  129 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~--  129 (245)
                      .+.+|.+++++ .+|  +|||+||...    +|.|++|||++++|| ++.+||.||++||||+.+..+.+++.+...+  
T Consensus         7 ~~~~v~~~i~~-~~g--~vLL~~r~~~----~~~w~~P~G~~~~gE-~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y   78 (156)
T PRK00714          7 YRPNVGIILLN-RQG--QVFWGRRIGQ----GHSWQFPQGGIDPGE-TPEQAMYRELYEEVGLRPEDVEILAETRDWLRY   78 (156)
T ss_pred             CCCeEEEEEEe-cCC--EEEEEEEcCC----CCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCccceEEEEEcCCeEEe
Confidence            34567777776 356  8999999843    488999999999999 9999999999999999998888887763211  


Q ss_pred             --c----------CCceEEEEEEEEeCCC-CCCCCCC-CcccceeEEEEcccccccc
Q 025996          130 --T----------KNGIIVVPVIGILPDR-NSFIPAP-NTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 --~----------~~~~~v~~~v~~~~~~-~~~~~~~-~~~Ev~~v~wvpl~el~~~  172 (245)
                        .          ..+...+.|++..... ....+.. +.+|+.++.|++++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~  135 (156)
T PRK00714         79 DLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQ  135 (156)
T ss_pred             cCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence              0          1112344555555321 1112222 3469999999999999763

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=9.3e-16  Score=118.16  Aligned_cols=100  Identities=23%  Similarity=0.331  Sum_probs=72.4

Q ss_pred             EEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCc--ceEEEEeCCccc-CC--
Q 025996           58 VCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSL--VNVVTILDPIFT-KN--  132 (245)
Q Consensus        58 v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~--~~~lg~l~~~~~-~~--  132 (245)
                      +++++ .++  ++||+||...     |.|.||||+++++| ++++||+||++||||+....  ++.++.+..... ..  
T Consensus         5 ~~v~~-~~~--~vLl~~r~~~-----~~w~~PgG~ve~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   75 (118)
T cd04690           5 ALILV-RDG--RVLLVRKRGT-----DVFYLPGGKIEAGE-TPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGV   75 (118)
T ss_pred             EEEEe-cCC--eEEEEEECCC-----CcEECCCCccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCc
Confidence            33444 355  8999888643     68999999999999 99999999999999998887  888777654321 12  


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      ...++.|.+.+..    ... ..+|+.++.|+|++++..
T Consensus        76 ~~~~~~f~~~~~~----~~~-~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          76 DVRATVYVAELTG----EPV-PAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             EEEEEEEEEcccC----CcC-CCchhhccEEecHHHccc
Confidence            2344444444432    222 347999999999999844

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1.2e-15  Score=119.62  Aligned_cols=101  Identities=19%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc------c--CCceEEEEEE
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF------T--KNGIIVVPVI  140 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~------~--~~~~~v~~~v  140 (245)
                      +|||+||...   ..+.|.+|||+++.|| ++++||.||+.||||+.+...+++.......      .  ......+.|.
T Consensus        13 ~vLl~~r~~~---~~~~~~lPGG~ve~gE-t~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~   88 (128)
T cd04687          13 KILLIKHHDD---GGVWYILPGGGQEPGE-TLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFE   88 (128)
T ss_pred             EEEEEEEEcC---CCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEE
Confidence            8999999643   3478999999999999 9999999999999999987666554433221      1  1222334455


Q ss_pred             EEeCCCCCCCC--CCCcccceeEEEEccccccccCC
Q 025996          141 GILPDRNSFIP--APNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       141 ~~~~~~~~~~~--~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      +..........  ..+ .|..++.|+|++++.+...
T Consensus        89 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~~  123 (128)
T cd04687          89 CKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDIPL  123 (128)
T ss_pred             EEECCCCcccccCCCC-CCEEeeEEEcHHHhCcccc
Confidence            55543211111  122 3557899999999976543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.2e-15  Score=118.89  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||++|...   ..+.|+||||++|.|| ++.+||.||++||||+.+....+++....    .+...+.|.+...... 
T Consensus        13 ~vLL~~r~~~---~~~~w~lPGG~ve~gE-s~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~g~-   83 (121)
T cd04669          13 EILLIRRIKP---GKTYYVFPGGGIEEGE-TPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYFLARVISGK-   83 (121)
T ss_pred             EEEEEEEecC---CCCcEECCceeccCCC-CHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEEEEEEECCe-
Confidence            8999999754   2578999999999999 99999999999999999866666665443    2334556666554321 


Q ss_pred             CCC-------CCCcccceeEEEEccccccccC
Q 025996          149 FIP-------APNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       149 ~~~-------~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ...       ..+.++..++.|++++++....
T Consensus        84 ~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~  115 (121)
T cd04669          84 LGLGVGEEFERQSDDNQYHPVWVDLDQLETIP  115 (121)
T ss_pred             ecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence            111       1123456789999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=2.3e-15  Score=117.35  Aligned_cols=106  Identities=23%  Similarity=0.283  Sum_probs=74.5

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC--
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK--  131 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~--  131 (245)
                      .+|.+++++  ++  +|||++|..     .|.|+||||++++|| ++.+||+||++||||+......+++........  
T Consensus         3 ~~v~~~i~~--~~--~vLL~~~~~-----~~~w~~PGG~ve~gE-s~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~   72 (123)
T cd04672           3 VDVRAAIFK--DG--KILLVREKS-----DGLWSLPGGWADVGL-SPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPP   72 (123)
T ss_pred             ceEEEEEEE--CC--EEEEEEEcC-----CCcEeCCccccCCCC-CHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCC
Confidence            345555665  34  789998865     489999999999999 999999999999999988666666655432211  


Q ss_pred             -Cc--eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 -NG--IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 -~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                       ..  .....|.+.+...   ....+ +|+.++.|++++++.+..
T Consensus        73 ~~~~~~~~~~f~~~~~~~---~~~~~-~E~~~~~W~~~~el~~l~  113 (123)
T cd04672          73 PQPYQVYKLFFLCEILGG---EFKPN-IETSEVGFFALDDLPPLS  113 (123)
T ss_pred             CCceEEEEEEEEEEecCC---cccCC-CceeeeEEECHHHCcccc
Confidence             11  2223444554331   23344 789999999999986643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.65  E-value=2.1e-15  Score=115.93  Aligned_cols=97  Identities=19%  Similarity=0.300  Sum_probs=77.0

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      ++||++|+... .++|.|+||||+++.+| ++.+||.||+.||||+++.....++...+.++.....+..|.+.....  
T Consensus        14 ~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e-~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   89 (124)
T cd03425          14 RILIAQRPAGK-HLGGLWEFPGGKVEPGE-TPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSG--   89 (124)
T ss_pred             EEEEEEeCCCC-CCCCeEeCCCcccCCCC-CHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCC--
Confidence            89999998774 68999999999999999 999999999999999988777777777665555555666666554321  


Q ss_pred             CCCCCCcccceeEEEEcccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                         ...+.|..++.|++++++.+.
T Consensus        90 ---~~~~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          90 ---EPQLLEHQELRWVPPEELDDL  110 (124)
T ss_pred             ---CcccccCceEEEeeHHHcccC
Confidence               122567889999999998764

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=1.9e-15  Score=118.07  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC----CceEEEEEEEEeC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK----NGIIVVPVIGILP  144 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~----~~~~v~~~v~~~~  144 (245)
                      +|||+||..     .+.|++|||++|.|| ++.+||.||++||||+.+....+++.....+..    .....+.|.+.+.
T Consensus        13 ~vLl~~~~~-----~~~w~lPgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   86 (126)
T cd04688          13 KLLVQKNPD-----ETFYRPPGGGIEFGE-SSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLL   86 (126)
T ss_pred             EEEEEEeCC-----CCeEECCCccccCCC-CHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeC
Confidence            899999875     478999999999999 999999999999999999888888776533221    1233445555554


Q ss_pred             CCCCCC----CCCCcccceeEEEEccccccccC
Q 025996          145 DRNSFI----PAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       145 ~~~~~~----~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ......    ...+.+|+.++.|++++++....
T Consensus        87 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~  119 (126)
T cd04688          87 DESLYQQDIEILEEEGEKIVFRWIPIDELKEIK  119 (126)
T ss_pred             CCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence            422110    01245789999999999998543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.8e-15  Score=114.96  Aligned_cols=91  Identities=24%  Similarity=0.258  Sum_probs=71.0

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||++|..      |.|+||||++++|| ++.+||.||++||||+.+..+..++.+..    .....+.|.+.+.... 
T Consensus        12 ~vLlv~r~~------~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~~~-   79 (112)
T cd04667          12 RVLLVRKSG------SRWALPGGKIEPGE-TPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVPPSA-   79 (112)
T ss_pred             EEEEEEcCC------CcEeCCCCcCCCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcCCcC-
Confidence            899999863      78999999999999 99999999999999999888887777543    1233455666554321 


Q ss_pred             CCCCCCcccceeEEEEccccccccC
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                        ....++|+.++.|+|++++.+..
T Consensus        80 --~~~~~~e~~~~~W~~~~el~~~~  102 (112)
T cd04667          80 --QPKPSNEIADCRWLSLDALGDLN  102 (112)
T ss_pred             --CCCCchheeEEEEecHHHhhhcc
Confidence              12345799999999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00586 mutt mutator mutT protein

Probab=99.64  E-value=4.1e-15  Score=115.88  Aligned_cols=97  Identities=15%  Similarity=0.286  Sum_probs=75.5

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      ++|+++|... +.++|.|+||||+++.|| ++.+||.||+.||||+.+.....++...+.++.....++.|.+..... .
T Consensus        17 ~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge-~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~-~   93 (128)
T TIGR00586        17 EIIITRRADG-HMFAKLLEFPGGKEEGGE-TPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGG-P   93 (128)
T ss_pred             EEEEEEEeCC-CCCCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCC-C
Confidence            7999999876 478999999999999999 999999999999999988766667776666665556666666665432 1


Q ss_pred             CCCCCCcccceeEEEEcccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                          +...+..++.|++++++.+.
T Consensus        94 ----~~~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        94 ----PGKEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             ----cCcccccccEEeCHHHCCcc
Confidence                12345678899999988764

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=2.9e-15  Score=116.23  Aligned_cols=107  Identities=27%  Similarity=0.298  Sum_probs=73.0

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc---cc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI---FT  130 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~---~~  130 (245)
                      .+|.+++++ .++  ++||+||+..     |.|+||||+++.+| ++.+||.||++||||+++....+++.+...   .+
T Consensus         3 ~~v~~ii~~-~~~--~vLl~~r~~~-----~~w~lPgG~v~~~E-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~   73 (129)
T cd04676           3 PGVTAVVRD-DEG--RVLLIRRSDN-----GLWALPGGAVEPGE-SPADTAVREVREETGLDVEVTGLVGIYTGPVHVVT   73 (129)
T ss_pred             ceEEEEEEC-CCC--eEEEEEecCC-----CcEECCeeccCCCC-CHHHHHHHHHHHHhCceeEeeEEEEEeecccceee
Confidence            345555555 345  8999999864     89999999999999 999999999999999988766665443221   11


Q ss_pred             --CC---ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 --KN---GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 --~~---~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                        ..   ......|.+.....   ....+.+|+.++.|++++++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          74 YPNGDVRQYLDITFRCRVVGG---ELRVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             cCCCCcEEEEEEEEEEEeeCC---eecCCCCceeEEEEEChhhCccc
Confidence              11   12222333333321   12235578899999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=5.1e-15  Score=116.36  Aligned_cols=100  Identities=21%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             CCCcEEEEEEEeCCC--CCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEE
Q 025996           64 NDGDLRVFLTKRSSN--LSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIG  141 (245)
Q Consensus        64 ~~g~~~vLL~rR~~~--~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~  141 (245)
                      .++.++|||++|...  ++...|.|+||||+++.+| ++.+||+||++||||+... ...+. +..+....+..++.|++
T Consensus        11 ~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E-~~~~aA~REl~EEtGl~~~-~~~~~-l~~~~~~~~~~v~~fl~   87 (126)
T cd04662          11 RDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGE-DPLLAAKREFSEETGFCVD-GPFID-LGSLKQSGGKVVHAWAV   87 (126)
T ss_pred             cCCcEEEEEEEccCccccCCCCCEEECCcccCCCCc-CHHHHHHHHHHHHhCCcce-eeEEe-EEEEECCCCeEEEEEEE
Confidence            456779999998543  2366789999999999999 9999999999999999865 22222 22222223335566655


Q ss_pred             EeCCCC-------------CCCCCCC-cccceeEEEEcc
Q 025996          142 ILPDRN-------------SFIPAPN-TAEVDAIFDAPL  166 (245)
Q Consensus       142 ~~~~~~-------------~~~~~~~-~~Ev~~v~wvpl  166 (245)
                      ....+.             ....... .+|++++.|+|+
T Consensus        88 ~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          88 EADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             EecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence            544211             1112222 478888888874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=5.5e-15  Score=116.42  Aligned_cols=105  Identities=22%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      +.+|.+++++  ++  +|||+||...  ...|.|++|||++|.|| ++++||+||++||||+++....+++..... . .
T Consensus        13 ~~~v~~ii~~--~~--~vLL~kr~~~--~~~g~w~lPgG~ve~gE-~~~~a~~REl~EEtGl~~~~~~~~~~~~~~-~-~   83 (130)
T cd04511          13 KIIVGCVPEW--EG--KVLLCRRAIE--PRHGFWTLPAGFMENGE-TTEQGALRETWEEAGARVEIDGLYAVYSVP-H-I   83 (130)
T ss_pred             cEEEEEEEec--CC--EEEEEEecCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCEEEeeeEEEEEecC-C-c
Confidence            3444444454  34  8999999764  46789999999999999 999999999999999988666666655321 1 2


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL  170 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~  170 (245)
                      ....+.|.+.+... .  ... ..|..++.|++++++.
T Consensus        84 ~~~~~~f~~~~~~~-~--~~~-~~e~~~~~~~~~~~l~  117 (130)
T cd04511          84 SQVYMFYRARLLDL-D--FAP-GPESLEVRLFTEEEIP  117 (130)
T ss_pred             eEEEEEEEEEEcCC-c--ccC-CcchhceEEECHHHCC
Confidence            23455667766542 1  222 3678899999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=4.7e-15  Score=117.20  Aligned_cols=107  Identities=14%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC-CcceEEEEeCCcc---cC
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP-SLVNVVTILDPIF---TK  131 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~-~~~~~lg~l~~~~---~~  131 (245)
                      |.+++++  ++  +|||++|...     +.|+||||++|+|| ++.+||+||++||||+.. .....++.+..+.   ..
T Consensus         3 ~~~ii~~--~~--~vLLv~~~~~-----~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~   72 (131)
T cd04686           3 VRAIILQ--GD--KILLLYTKRY-----GDYKFPGGGVEKGE-DHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKP   72 (131)
T ss_pred             EEEEEEE--CC--EEEEEEEcCC-----CcEECccccCCCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCC
Confidence            3344454  35  7999998642     57999999999999 999999999999999986 4455666654221   11


Q ss_pred             ----CceEEEEEEEEeCCCCCCCCCCCcccc---eeEEEEccccccccC
Q 025996          132 ----NGIIVVPVIGILPDRNSFIPAPNTAEV---DAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ----~~~~v~~~v~~~~~~~~~~~~~~~~Ev---~~v~wvpl~el~~~~  173 (245)
                          .....+.|++.+.... .....++.|.   ..+.|+|++++....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~W~~~~ea~~~~  120 (131)
T cd04686          73 DADIFHMISYYYLCEVDAEL-GAQQLEDYEAELGMKPIWINIHEAIEHN  120 (131)
T ss_pred             CCceeEEEEEEEEEEEcCCc-CCcccchhhHhcCCCcEEecHHHHHHhh
Confidence                1233456666665422 2233443343   358999999988754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.62  E-value=3.2e-15  Score=131.17  Aligned_cols=106  Identities=12%  Similarity=0.070  Sum_probs=80.6

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .+|++++.+  ++  +|||+||...   .+|.|++|||++|+|| |+++||.||++|||||++..+++++.....+  ..
T Consensus       133 paViv~V~~--~~--~iLL~rr~~~---~~g~wslPgG~vE~GE-s~eeAa~REv~EEtGl~v~~~~~~~s~~~~~--p~  202 (256)
T PRK00241        133 PCIIVAVRR--GD--EILLARHPRH---RNGVYTVLAGFVEVGE-TLEQCVAREVMEESGIKVKNLRYVGSQPWPF--PH  202 (256)
T ss_pred             CEEEEEEEe--CC--EEEEEEccCC---CCCcEeCcccCCCCCC-CHHHHhhhhhhhccCceeeeeEEEEeEeecC--CC
Confidence            345554443  34  8999998754   2789999999999999 9999999999999999998888888764322  23


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..++.|.+.+...   .+.++++|+.++.|++++++...
T Consensus       203 ~lm~~f~a~~~~~---~~~~~~~Ei~~a~W~~~del~~l  238 (256)
T PRK00241        203 SLMLGFHADYDSG---EIVFDPKEIADAQWFRYDELPLL  238 (256)
T ss_pred             eEEEEEEEEecCC---cccCCcccEEEEEEECHHHCccc
Confidence            3456677766532   24567789999999999997543

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.61  E-value=3e-15  Score=125.44  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=83.5

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCC----CCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNL----SSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT  130 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~----~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~  130 (245)
                      +|.|++++.+++  +|||+++-+..    +..++.|+||||++|+|| ++++||+||++||||+....++.++.+.....
T Consensus        46 ~v~vl~~~~~~~--~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE-~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g  122 (185)
T TIGR00052        46 AAAVLLYDPKKD--TVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGE-SPEDVARREAIEEAGYQVKNLRKLLSFYSSPG  122 (185)
T ss_pred             eEEEEEEECCCC--EEEEEECceeeeeecCCcceEEEECcEecCCCC-CHHHHHHHHccccccceecceEEEEEEEcCCC
Confidence            455555543334  78888765431    115678999999999999 99999999999999999999998888765555


Q ss_pred             CCceEEEEEEEEeCCCCCC-CCCCCcccceeEEEEcccccccc
Q 025996          131 KNGIIVVPVIGILPDRNSF-IPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 ~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .+...++.|++.+...... ....+++|..++.|+|++++.+.
T Consensus       123 ~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~  165 (185)
T TIGR00052       123 GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW  165 (185)
T ss_pred             CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence            5667788888876542111 11234467778999999988764

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=1.2e-14  Score=110.65  Aligned_cols=108  Identities=23%  Similarity=0.346  Sum_probs=77.7

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc--CCc
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT--KNG  133 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~--~~~  133 (245)
                      +.+++++ .++  ++||++|...   ++|.|+||||+++.+| ++.+||+||++||+|+.+.....++.+.....  ...
T Consensus         3 ~~~i~~~-~~~--~ill~kr~~~---~~~~~~~p~G~~~~~e-~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   75 (123)
T cd02883           3 VGAVILD-EDG--RVLLVRRADS---PGGLWELPGGGVEPGE-TLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEH   75 (123)
T ss_pred             eEEEEEC-CCC--CEEEEEEcCC---CCCeEeCCcccccCCC-CHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCce
Confidence            3444454 334  7999999875   6799999999999999 99999999999999998865555554433322  344


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..+..|.+.+..... . ..+..|+.++.|++++++.+.
T Consensus        76 ~~~~~~~~~~~~~~~-~-~~~~~e~~~~~w~~~~~l~~~  112 (123)
T cd02883          76 AVVFVFLARLVGGEP-T-LLPPDEISEVRWVTLDELPAL  112 (123)
T ss_pred             EEEEEEEEEeCCCCc-C-CCCCCccceEEEEcHHHCccc
Confidence            555566666554211 1 245678899999999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PLN02791 Nudix hydrolase homolog

Probab=99.59  E-value=9.5e-15  Score=143.82  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=88.0

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeC
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILD  126 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~  126 (245)
                      +..+.+|.|+|++..++  +||||||+..+..|||.|++ +|||++.|| +..+||+||++||+||.+.  .+.+++.+.
T Consensus        29 Gl~HrAvhVwIfn~~~g--elLLQkRS~~K~~~PG~WDiS~gGHv~aGE-s~~eAA~REL~EELGI~l~~~~l~~l~~~~  105 (770)
T PLN02791         29 GDYHRAVHVWIYSESTQ--ELLLQRRADCKDSWPGQWDISSAGHISAGD-TSLLSAQRELEEELGIILPKDAFELLFVFL  105 (770)
T ss_pred             CCceEEEEEEEEECCCC--eEEEEEecCCCCCCCCcccCcCCCCCCCCC-CHHHHHHHHHHHHhCCCCChhheeeeeeEE
Confidence            67899999999984345  89999999999999999999 799999999 8899999999999999753  345555431


Q ss_pred             Cc-c-cC----CceEEEEEEEEeCCC-CCCCCCCCcccceeEEEEccccccc
Q 025996          127 PI-F-TK----NGIIVVPVIGILPDR-NSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       127 ~~-~-~~----~~~~v~~~v~~~~~~-~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      .. . ..    .....+.|++..... ......++++||+++.|++++++.+
T Consensus       106 ~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~  157 (770)
T PLN02791        106 QECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS  157 (770)
T ss_pred             EEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence            11 1 11    112334444433221 1124567899999999999999974

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.58  E-value=2.1e-14  Score=121.95  Aligned_cols=114  Identities=17%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCC-----CCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSS-----HSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~-----~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      +|+|+.+..+++  +|+|++.-+.. .     .+-.|+||+|.+|+|| ++++||+||+.||||+.+..++.++.+....
T Consensus        51 ~V~il~~~~~~~--~vlLvrQyR~~-~~~~~~~~~~lE~PAG~vd~gE-~p~~aA~REL~EETGy~a~~~~~l~~~~~sp  126 (202)
T PRK10729         51 AAVLLPFDPVRD--EVVLIEQIRIA-AYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVGRTKPVLSYLASP  126 (202)
T ss_pred             eEEEEEEECCCC--EEEEEEeeecc-cccCCCCCeEEEccceEcCCCC-CHHHHHHHHHHHHhCceeeEEEEEEEEEcCC
Confidence            344444442334  67777765431 2     2346999999999999 9999999999999999999888888776666


Q ss_pred             cCCceEEEEEEEEeCCC--CCCCCCCCcccceeEEEEcccccccc
Q 025996          130 TKNGIIVVPVIGILPDR--NSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~~~~~~v~~~v~~~~~~--~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      +.+...++.|++.....  .......+++|..++.|+|++++.+.
T Consensus       127 g~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~  171 (202)
T PRK10729        127 GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  171 (202)
T ss_pred             CcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence            66777888999886321  11112356788889999999998764

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.57  E-value=3e-14  Score=129.90  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=75.3

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCC---c--
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDP---I--  128 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~---~--  128 (245)
                      .+|.++++.  +|  +|||++|...  +.+|.|++|||++|+|| ++++||+||++|||||++....+.+.+..   +  
T Consensus       204 vtv~avv~~--~g--~VLLvrR~~~--p~~g~W~lPGG~ve~gE-t~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~  276 (340)
T PRK05379        204 VTVDAVVVQ--SG--HVLLVRRRAE--PGKGLWALPGGFLEQDE-TLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH  276 (340)
T ss_pred             eEEEEEEEE--CC--EEEEEEecCC--CCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence            344444443  45  8999999875  56899999999999999 99999999999999998765443333211   1  


Q ss_pred             cc---CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          129 FT---KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~~---~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..   ......+.|.+.+........ ...+|+.++.|+|++++...
T Consensus       277 p~r~~~~~~i~~~f~~~~~~~~~~~~-~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        277 PGRSLRGRTITHAFLFEFPAGELPRV-KGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCCcEEEEEEEEEecCCccCcc-CCCCceeeEEEEEHHHhhhh
Confidence            11   112344556665543211122 24478999999999998753

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.56  E-value=3.7e-14  Score=123.53  Aligned_cols=120  Identities=16%  Similarity=0.075  Sum_probs=81.6

Q ss_pred             CCCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCC----------------CHHHHHHHHHHHH
Q 025996           49 STKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDA----------------DDAGTALREAKEE  111 (245)
Q Consensus        49 ~~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~----------------s~~~aA~REl~EE  111 (245)
                      .+..+.|+.++|++ .+|  +||||||+..+..+||.|+.. ||++..||+                +..+||+||++||
T Consensus        52 ~gl~Hra~~v~i~n-~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EE  128 (247)
T PLN02552         52 RGLLHRAFSVFLFN-SKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHE  128 (247)
T ss_pred             CCceEEEEEEEEEc-CCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHH
Confidence            36788999999987 466  899999999998999999665 455544421                1678999999999


Q ss_pred             HCCCCCc-----ceEEEEeCCcccCC------c----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          112 IGLDPSL-----VNVVTILDPIFTKN------G----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       112 tGl~~~~-----~~~lg~l~~~~~~~------~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      |||+...     +.+++.+.......      +    ..+..+++. .......+.++++||.++.|++++++.+.
T Consensus       129 lGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~  203 (247)
T PLN02552        129 LGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEM  203 (247)
T ss_pred             hCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHH
Confidence            9998543     44455432211111      1    222222222 11112246789999999999999999874

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=5.5e-14  Score=111.74  Aligned_cols=113  Identities=19%  Similarity=0.109  Sum_probs=73.1

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC-CcceEEEEeCCcc---cC
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP-SLVNVVTILDPIF---TK  131 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~-~~~~~lg~l~~~~---~~  131 (245)
                      +.+++++ .+|  +|||++|.......++.|.+|||+++.|| ++.+||.||++||||+.. .....+......+   ..
T Consensus         3 ~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~gE-~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~   78 (133)
T cd04685           3 ARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPGE-SPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV   78 (133)
T ss_pred             EEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc
Confidence            4455565 355  89999988753346789999999999999 999999999999999988 4444443322111   11


Q ss_pred             -CceEEEEEEEEeCCCCCCCCC---CCcccceeEEEEcccccccc
Q 025996          132 -NGIIVVPVIGILPDRNSFIPA---PNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 -~~~~v~~~v~~~~~~~~~~~~---~~~~Ev~~v~wvpl~el~~~  172 (245)
                       .....+.|++...........   ...+++.++.|+++++|.+.
T Consensus        79 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          79 DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence             112334455554421111111   11235678999999999875

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.52  E-value=6.9e-14  Score=110.75  Aligned_cols=94  Identities=20%  Similarity=0.061  Sum_probs=66.4

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeC-----Ccc-------cCCceEE
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILD-----PIF-------TKNGIIV  136 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~-----~~~-------~~~~~~v  136 (245)
                      ++||+||...   ..|.|+||||++|+|| |+.+||.||++||||+.+.. .+++...     ..+       ...+..+
T Consensus        14 ~~Llvk~~~~---~~g~W~fPgG~ve~gE-t~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (132)
T cd04661          14 LVLLVQQKVG---SQNHWILPQGKREEGE-TLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV   88 (132)
T ss_pred             EEEEEEeecC---CCCeeECCcccccCCC-CHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence            7899988653   2689999999999999 99999999999999997653 3333211     100       0112355


Q ss_pred             EEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          137 VPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       137 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      +.|.+.+...   ...++ +|+.++.|++++++.+
T Consensus        89 ~~f~~~~~~g---~~~~~-~e~~~~~W~~~~el~~  119 (132)
T cd04661          89 FFFKARYMSG---QFELS-QNQVDFKWLAKEELQK  119 (132)
T ss_pred             EEEEEEEecC---ccccC-CCcceeEecCHHHHHh
Confidence            6666666542   22233 7899999999999875

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.51  E-value=1.6e-13  Score=115.54  Aligned_cols=113  Identities=15%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCC------CCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSS------HSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI  128 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~------~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~  128 (245)
                      +|+|++++.+++  +|+|++.-+.. .      ..-.|++|+|.+|. + ++++||+||++||||+.+..++.++.+...
T Consensus        47 ~v~Vl~~~~~~~--~vvLvrQyR~~-v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~~~~~l~~~~~s  121 (191)
T PRK15009         47 GATILLYNAKKK--TVVLIRQFRVA-TWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVGEVRKLFELYMS  121 (191)
T ss_pred             EEEEEEEECCCC--EEEEEEccccc-ccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccceEEEeeEEEcC
Confidence            344444543344  78888766542 2      33458999999996 4 589999999999999999999999888766


Q ss_pred             ccCCceEEEEEEEEeCCCCC-CCCCCCcccceeEEEEcccccccc
Q 025996          129 FTKNGIIVVPVIGILPDRNS-FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~-~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .+.+...++.|++....... .....+++|..++.|+|++++.+.
T Consensus       122 pG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~  166 (191)
T PRK15009        122 PGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM  166 (191)
T ss_pred             CcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence            66677788889888642211 111245788999999999998764

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=3.4e-13  Score=105.17  Aligned_cols=100  Identities=22%  Similarity=0.209  Sum_probs=73.3

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceE
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGII  135 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~  135 (245)
                      |+++++.  ++  ++||+++..      +.|+||||+++.+| ++++||+||++||+|+....+..++.+..........
T Consensus         3 v~vi~~~--~~--~vLl~~~~~------~~w~lPgG~ve~gE-~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~   71 (118)
T cd04665           3 VLVICFY--DD--GLLLVRHKD------RGWEFPGGHVEPGE-TIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFE   71 (118)
T ss_pred             EEEEEEE--CC--EEEEEEeCC------CEEECCccccCCCC-CHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEE
Confidence            4444444  34  789988752      46999999999999 9999999999999999999999998875443333445


Q ss_pred             EEEEEEEeCCCCCCCCCCCcccceeEEEEccccc
Q 025996          136 VVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMF  169 (245)
Q Consensus       136 v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el  169 (245)
                      ...|.+.+.....  .. ...|+....|++....
T Consensus        72 ~~~y~a~~~~~~~--~~-~~~E~~~~~~~~~~~~  102 (118)
T cd04665          72 TLVYPAVSAQLEE--KA-SYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEEEEEEEeccc--cc-ccccccCcEEeccCCc
Confidence            5566666654322  12 3489999999986643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=7.1e-13  Score=103.34  Aligned_cols=45  Identities=29%  Similarity=0.433  Sum_probs=39.6

Q ss_pred             EEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC
Q 025996           70 VFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS  117 (245)
Q Consensus        70 vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~  117 (245)
                      +||.+|...  +.+|.|+||||++|++| ++.+||.||++||||+...
T Consensus        17 ~lL~~r~~~--~~~~~w~lPgG~ve~~E-~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674          17 LLVIRRGIE--PGRGKLALPGGFIELGE-TWQDAVARELLEETGVAVD   61 (118)
T ss_pred             EEEEEeecC--CCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCccc
Confidence            666677653  56899999999999999 9999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK08999 hypothetical protein; Provisional

Probab=99.49  E-value=3e-13  Score=121.52  Aligned_cols=98  Identities=16%  Similarity=0.213  Sum_probs=75.7

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||+||... +.++|.|+||||+++.|| ++.+||.||++||||+.+.....++...+.++.....++.|.+.....  
T Consensus        18 ~vLL~kR~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~--   93 (312)
T PRK08999         18 RILLARRPEG-KHQGGLWEFPGGKVEPGE-TVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG--   93 (312)
T ss_pred             eEEEEEecCC-CCCCCeEECCccCCCCCC-CHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC--
Confidence            7999999876 478999999999999999 999999999999999987776666666655555555666665443221  


Q ss_pred             CCCCCCcccceeEEEEccccccccC
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                         .++..|..++.|++++++.+-.
T Consensus        94 ---~~~~~e~~~~~Wv~~~el~~~~  115 (312)
T PRK08999         94 ---EPHGREGQPLAWVAPDELAVYP  115 (312)
T ss_pred             ---cccCccCCccEEecHHHcccCC
Confidence               1334677888999999987743

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.46  E-value=1.2e-12  Score=103.17  Aligned_cols=100  Identities=17%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc-eEEEEeCCcccCCceEEEEEEEEe
Q 025996           65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV-NVVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~-~~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      +++.+|++.+.+.      +.|.||||+++++| ++.+||.||++||||+..... ..++............++.+++.+
T Consensus        11 ~~~~~ll~~r~~~------~~~~lPgG~ve~~E-~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   83 (126)
T cd04663          11 GEVLELLVFEHPL------AGFQIVKGTVEPGE-TPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCEV   83 (126)
T ss_pred             CceEEEEEEEcCC------CcEECCCccCCCCC-CHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEEe
Confidence            3346777776543      35999999999999 999999999999999986211 112222222212233444444444


Q ss_pred             C----CCCCCCCCCCcccceeEEEEccccccc
Q 025996          144 P----DRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       144 ~----~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      .    .........+..+...++|+|++++.+
T Consensus        84 ~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~  115 (126)
T cd04663          84 DQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD  115 (126)
T ss_pred             cCCCcccccCcccCCCCceEEEEEEccccccc
Confidence            2    111111222344555677999999844

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.45  E-value=9.3e-13  Score=107.31  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      ++||+++..      ..|+||||++|+|| ++++||.||++||||+.+..+.+++.+...........+.|++.+...  
T Consensus        36 ~~LL~~~~~------~~~elPgG~vE~gE-t~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~--  106 (156)
T TIGR02705        36 QWLLTEHKR------RGLEFPGGKVEPGE-TSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL--  106 (156)
T ss_pred             EEEEEEEcC------CcEECCceecCCCC-CHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc--
Confidence            688887653      24999999999999 999999999999999999999999987665444556667777777632  


Q ss_pred             CCCCCCcccceeEE-EEcccccccc
Q 025996          149 FIPAPNTAEVDAIF-DAPLEMFLKD  172 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~-wvpl~el~~~  172 (245)
                       .  .. +|..++. +++++++.+.
T Consensus       107 -~--~~-~e~~E~~~~~~~~~~~~~  127 (156)
T TIGR02705       107 -E--SK-DDYLETKGPVLLQEIPDI  127 (156)
T ss_pred             -c--cC-CCceeeEeEEEHHHHHHH
Confidence             1  22 5555555 7999988664

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PLN03143 nudix hydrolase; Provisional

Probab=99.41  E-value=2.3e-12  Score=114.58  Aligned_cols=53  Identities=30%  Similarity=0.443  Sum_probs=42.3

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCc
Q 025996           65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSL  118 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~  118 (245)
                      +++.+|+|+++.+.. ...-.|+||||++|++++++++||+||++||||+.+..
T Consensus       140 ~ge~~VlLVrQ~R~p-vg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a  192 (291)
T PLN03143        140 EGETYAVLTEQVRVP-VGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKL  192 (291)
T ss_pred             CCCEEEEEEEeEecC-CCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCcccc
Confidence            465579999988642 33448999999999863399999999999999998653

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.37  E-value=7.8e-12  Score=104.64  Aligned_cols=46  Identities=33%  Similarity=0.328  Sum_probs=40.9

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC
Q 025996           65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP  116 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~  116 (245)
                      ++.++||+++|+.     .|.|+||||++|++| ++.+||.||++||||+..
T Consensus        46 ~~~l~vLl~~r~~-----~g~walPGG~v~~~E-~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          46 KPILQFVAIKRPD-----SGEWAIPGGMVDPGE-KISATLKREFGEEALNSL   91 (186)
T ss_pred             CCeeEEEEEEeCC-----CCcCcCCeeeccCCC-CHHHHHHHHHHHHHcccc
Confidence            4578999999965     389999999999999 999999999999997653

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.36  E-value=8.8e-12  Score=96.92  Aligned_cols=112  Identities=23%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHH-HHHHHHHHHHCCCCC--cceEEEEeCCcccC
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAG-TALREAKEEIGLDPS--LVNVVTILDPIFTK  131 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~-aA~REl~EEtGl~~~--~~~~lg~l~~~~~~  131 (245)
                      ++.+++.....  .+||+++|....    +.|+||||++|.+| ++.+ ||+||++||||+...  ....++.+......
T Consensus        13 ~~~~~~~~~~~--~~vl~~~~~~~~----~~~~~PgG~ve~~e-~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T COG0494          13 AVAVLVGRDGP--GEVLLAQRRDDG----GLWELPGGKVEPGE-ELPEEAAARELEEETGLRVKDERLELLGEFPPSPGD   85 (161)
T ss_pred             eEEEEEecCCC--CEEeEEEccccC----CceecCCcccCCCC-chHHHHHHHHHHHHhCCeeeeecceeeeeccCcccC
Confidence            44444444222  389999988763    79999999999999 4477 999999999999888  56667776554332


Q ss_pred             Cc-----eEEEEEEEEeCCCCCCCCCCC---cccceeEEEEccccccccC
Q 025996          132 NG-----IIVVPVIGILPDRNSFIPAPN---TAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~-----~~v~~~v~~~~~~~~~~~~~~---~~Ev~~v~wvpl~el~~~~  173 (245)
                      ..     .....+...............   ..|...+.|+++.++....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  135 (161)
T COG0494          86 GSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV  135 (161)
T ss_pred             cccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence            21     112222222111111111111   2578899999998877654

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.35  E-value=8.1e-12  Score=103.44  Aligned_cols=117  Identities=22%  Similarity=0.266  Sum_probs=78.3

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc--eEEEEeCCcccC
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV--NVVTILDPIFTK  131 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~--~~lg~l~~~~~~  131 (245)
                      -+|+|+.+-..+|++.++|+|.-+. ....-.++||+|.+|.|| ++++||+||++||||+.-..+  .....+++-++.
T Consensus        74 dgVaIl~il~~dG~~~ivL~kQfRp-P~Gk~ciElPAGLiD~ge-~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn  151 (225)
T KOG3041|consen   74 DGVAILAILESDGKPYIVLVKQFRP-PTGKICIELPAGLIDDGE-DFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTN  151 (225)
T ss_pred             CeEEEEEEEecCCcEEEEEEEeecC-CCCcEEEEcccccccCCC-chHHHHHHHHHHHhCccceeeeccccEEcCCCCCC
Confidence            3444433333589999999987654 133335789999999999 999999999999999973322  234555555555


Q ss_pred             CceEEEEEEEEeCCCC--CCCCCCCcccceeEEEEcccccccc
Q 025996          132 NGIIVVPVIGILPDRN--SFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~--~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ....+..+.......+  .....++..|..+++-+|+.+|.+.
T Consensus       152 ~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~  194 (225)
T KOG3041|consen  152 CNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE  194 (225)
T ss_pred             CceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence            4444443333222222  2223567789999999999998764

>PLN02839 nudix hydrolase

Probab=99.33  E-value=9.7e-12  Score=112.80  Aligned_cols=161  Identities=19%  Similarity=0.155  Sum_probs=110.6

Q ss_pred             CCchhHHHHHHHHhhcCCCCCCCccccccccccCcc----------ccccCCCCCceEEEEEEEEcCCCcEEEEEEEeCC
Q 025996            8 DRSERLETLVQRLRLYNERHQNPVTEREAVDSQDSY----------SVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSS   77 (245)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~r~aaV~v~l~~~~~g~~~vLL~rR~~   77 (245)
                      .++..+..++++++.-.-   -.-+++|...=..++          ++.++.+.+..+|.+--+...+++.++++.||+.
T Consensus       151 ~Rt~al~~v~~~lr~~g~---~~gWRnE~y~V~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~  227 (372)
T PLN02839        151 DRTRAVADVIKILGDKGI---IPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSL  227 (372)
T ss_pred             HHHHHHHHHHHHHHHcCC---CCCcccCccccccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCC
Confidence            344566677777776322   112455554111211          5667788889999875443346777999999999


Q ss_pred             CCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCC---cceEEEEeCCccc-CCce-EEEEEEEEeCCCCCCCC
Q 025996           78 NLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPS---LVNVVTILDPIFT-KNGI-IVVPVIGILPDRNSFIP  151 (245)
Q Consensus        78 ~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~---~~~~lg~l~~~~~-~~~~-~v~~~v~~~~~~~~~~~  151 (245)
                      .|..+||+| .+.||.+..|| ++.+|++||+.||.||+..   .+...|.+...+. ..+. .-..|++.+.-+.++.+
T Consensus       228 tK~t~PGmLDn~VAGGi~aGe-sp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~df~P  306 (372)
T PLN02839        228 SKSTYPGMLDHLVAGGLPHGI-SCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVP  306 (372)
T ss_pred             CCCCCCChhhhccccCccCCC-CHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCcccc
Confidence            999999999 56899999999 9999999999999999865   4445666654421 1121 11122333333335667


Q ss_pred             CCCcccceeEEEEcccccccc
Q 025996          152 APNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       152 ~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .++++||+++.+++++++++.
T Consensus       307 ~~qDGEVe~F~Lm~v~EV~~~  327 (372)
T PLN02839        307 KNQDGEVESFKLIPVAQVANV  327 (372)
T ss_pred             CCCccceeEEEEecHHHHHHH
Confidence            788999999999999999764

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.27  E-value=5.4e-12  Score=110.59  Aligned_cols=106  Identities=17%  Similarity=0.217  Sum_probs=83.1

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      -+|++++.+  .+  ++||-++.++   ++|.++.-+|.||+|| |+++|+.||++||+||.+..+.++++.+..+..+ 
T Consensus       145 P~vIv~v~~--~~--~ilLa~~~~h---~~g~yS~LAGFVE~GE-TlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~S-  215 (279)
T COG2816         145 PCVIVAVIR--GD--EILLARHPRH---FPGMYSLLAGFVEPGE-TLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHS-  215 (279)
T ss_pred             CeEEEEEec--CC--ceeecCCCCC---CCcceeeeeecccCCc-cHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchh-
Confidence            345444444  23  4888887764   4899999999999999 9999999999999999999999999887655433 


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       .+.-|.+.+...   .+.+|..|++++.|++.++++..
T Consensus       216 -LMigf~aey~sg---eI~~d~~Eleda~WFs~~evl~~  250 (279)
T COG2816         216 -LMLGFMAEYDSG---EITPDEGELEDARWFSRDEVLPA  250 (279)
T ss_pred             -hhhhheeeeccc---cccCCcchhhhccccCHhHHhhh
Confidence             345566666643   36788899999999999995543

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.22  E-value=2.6e-12  Score=113.27  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=75.8

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      -.|+++|++ .++  +.+|..|..  +.-+|.|+.++|.+|+|| |+++||+||++||+|++++.+.+....+.......
T Consensus       188 PvVIm~li~-~d~--~~~LL~R~~--r~~~gl~t~lAGFlEpGE-S~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~S  261 (345)
T KOG3084|consen  188 PVVIMLLID-HDG--KHALLGRQK--RYPPGLWTCLAGFLEPGE-SIEEAVRRETWEETGIEVEVISYVASQPWPLMPQS  261 (345)
T ss_pred             CeEEEEEEc-CCC--CEeeeeccc--CCCCchhhhhhccCCccc-cHHHHHHHHHHHHhCceeeeEeeeecCCCCCCchH
Confidence            445556665 455  344555533  467799999999999999 99999999999999999999987777655412111


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcc-cceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTA-EVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~-Ev~~v~wvpl~el~~~  172 (245)
                      + +..+++....  ...+..+.+ |.+++.|++-+++.+.
T Consensus       262 L-MIgc~ala~~--~~~I~vd~dlEleDaqwF~r~ev~~a  298 (345)
T KOG3084|consen  262 L-MIGCLALAKL--NGKISVDKDLELEDAQWFDREEVKSA  298 (345)
T ss_pred             H-HHHHHHHHhh--CCccccCcchhhhhcccccHHHHHHH
Confidence            1 1111111111  123456777 9999999999988764

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.12  E-value=2.4e-10  Score=90.59  Aligned_cols=117  Identities=20%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      +.|..+-.|++.. +....+|||+.=++.    +-.|-||+|++|++| +..+||+||+.||.|+.....+.++....+.
T Consensus         7 G~r~vagCi~~r~-~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE-~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~   80 (145)
T KOG2839|consen    7 GFRLVAGCICYRS-DKEKIEVLLVSSSKK----PHRWIVPKGGWEPDE-SVEEAALRETWEEAGVKGKLGRLLGGFEDFL   80 (145)
T ss_pred             CcEEEEEeeeeee-cCcceEEEEEecCCC----CCCccCCCCCCCCCC-CHHHHHHHHHHHHhCceeeeeccccchhhcc
Confidence            5555555555443 233579999985543    346999999999999 9999999999999999887777555554333


Q ss_pred             cC-CceEEEEEEEEeCCCCCCCCCCC-cccceeEEEEcccccccc
Q 025996          130 TK-NGIIVVPVIGILPDRNSFIPAPN-TAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~~-~~~~v~~~v~~~~~~~~~~~~~~-~~Ev~~v~wvpl~el~~~  172 (245)
                      +. .......+++.+.........++ ..|.-+..|+.+++....
T Consensus        81 ~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~  125 (145)
T KOG2839|consen   81 SKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIEL  125 (145)
T ss_pred             ChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHH
Confidence            22 22223333433332222222222 235788999999987653

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=99.09  E-value=1.4e-10  Score=94.53  Aligned_cols=115  Identities=21%  Similarity=0.241  Sum_probs=85.7

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF--  129 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~--  129 (245)
                      +.|..+.|++ .+|  ++|++||+..|+.|||.|.- ..||--+|| +..+||+|-+.+|+||.+.....+..++.+.  
T Consensus        33 HrAFS~~lFn-e~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~e-s~~~A~~rRl~~ELGie~~~~d~~~il~rf~Yr  108 (185)
T COG1443          33 HRAFSSFLFN-ERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPGE-SNEDAARRRLAYELGIEPDQYDKLEILPRFRYR  108 (185)
T ss_pred             HhhhheeEEC-CCC--ceeeehhhhhcccCcccccccccCCCcCCC-chHHHHHHHHHHHhCCCCcccCccccccceEEe
Confidence            6677778887 567  89999999999999999966 478888999 9999999999999999988544443333321  


Q ss_pred             --cCCc---eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          130 --TKNG---IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       130 --~~~~---~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                        +..+   ..|.++++....   ..+.+|++||.++.|++.++|.+.-.
T Consensus       109 A~~~~~~~E~Eic~V~~~~~~---~~~~~npdEV~~~~wv~~e~l~~~~~  155 (185)
T COG1443         109 AADPDGIVENEICPVLAARLD---SALDPNPDEVMDYRWVSPEDLKEMVD  155 (185)
T ss_pred             ccCCCCcceeeeeeEEEEeec---CCCCCChHHhhheeccCHHHHHHhhc
Confidence              1122   234444333222   14578999999999999999987644

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.03  E-value=3.5e-09  Score=80.77  Aligned_cols=91  Identities=22%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      ++||+||... +.++|+|+||+|.++.++ +.+++..||+.||.++   ....++.+.+.++.....+++|.+...... 
T Consensus        15 ~~ll~kR~~~-gl~~glwefP~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~~~~~~-   88 (118)
T cd03431          15 RVLLEKRPEK-GLLAGLWEFPSVEWEEEA-DGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLARLEGDL-   88 (118)
T ss_pred             eEEEEECCCC-CCCCcceeCCCccccCCc-CHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEEEeCCC-
Confidence            7999999876 689999999999999988 7888888999998775   223356666666766667777766554210 


Q ss_pred             CCCCCCcccceeEEEEcccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                             .+..++.|++++++.+.
T Consensus        89 -------~~~~~~~W~~~eel~~~  105 (118)
T cd03431          89 -------LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             -------cCccccEEccHHHHhhC
Confidence                   23466789999988763

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.81  E-value=2.8e-09  Score=94.12  Aligned_cols=126  Identities=22%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             ccccCCCCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE
Q 025996           44 SVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT  123 (245)
Q Consensus        44 ~~~~~~~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg  123 (245)
                      +..|....-+++|+..+++. ++  +||+++-.+..-...|.|-+|+|+++++| ++.++|+||++||||++....+++.
T Consensus       106 ~~lP~~Ash~vgvg~~V~n~-~~--eVlVv~e~d~~~~~~~~wK~ptG~v~~~e-~i~~gavrEvkeetgid~ef~eVla  181 (295)
T KOG0648|consen  106 STLPANASHRVGVGAFVLNK-KK--EVLVVQEKDGAVKIRGGWKLPTGRVEEGE-DIWHGAVREVKEETGIDTEFVEVLA  181 (295)
T ss_pred             ccCCCchhhheeeeeeEecC-Cc--eeEEEEecccceeecccccccceEecccc-cchhhhhhhhHHHhCcchhhhhHHH
Confidence            33444455678888877774 34  78887654544467899999999999999 9999999999999999877776654


Q ss_pred             EeCCcccCCc--eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          124 ILDPIFTKNG--IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       124 ~l~~~~~~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      .-........  ..-..+++.+.. ..+.+..+..|+..+.|+|+++..+...
T Consensus       182 ~r~~H~~~~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~qp~  233 (295)
T KOG0648|consen  182 FRRAHNATFGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVSQPL  233 (295)
T ss_pred             HHhhhcchhhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhcccc
Confidence            3322221111  111223344433 3566677888999999999998887665

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=98.54  E-value=1.7e-07  Score=80.52  Aligned_cols=128  Identities=20%  Similarity=0.173  Sum_probs=94.4

Q ss_pred             ccccCCCCCceEEEEEEEE--cCCCcEEEEEEEeCCCCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCCc--
Q 025996           44 SVAVSSTKKRAAVLVCLFE--GNDGDLRVFLTKRSSNLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPSL--  118 (245)
Q Consensus        44 ~~~~~~~~r~aaV~v~l~~--~~~g~~~vLL~rR~~~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~--  118 (245)
                      .+.++.+.+..+|.|--+.  ...+.+++++.||+..+..|||.| ...||.+-.|. +..+||+.|..||..|+...  
T Consensus       122 a~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~-gI~eT~iKE~~EEAnl~~~~~~  200 (306)
T KOG4313|consen  122 AATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF-GIKETAIKEAAEEANLPSDLVK  200 (306)
T ss_pred             cccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc-hHHHHHHHHHHHhcCCchhhHh
Confidence            4556777788888774332  233568999999999999999999 56799999999 99999999999999998732  


Q ss_pred             -ceEEEEeCCcccCC--c-eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          119 -VNVVTILDPIFTKN--G-IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       119 -~~~lg~l~~~~~~~--~-~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       +...|+++.++..+  + +.-+.||+.+.-..++.++.+.+||+..-.+++.+..+.
T Consensus       201 Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~  258 (306)
T KOG4313|consen  201 NLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVER  258 (306)
T ss_pred             cceecceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHH
Confidence             23345555543221  1 123346666665556777889999999999999877653

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.52  E-value=7.2e-07  Score=69.39  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=46.1

Q ss_pred             EEEEcCCCcEEEEEEEeCCCC--CCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC
Q 025996           59 CLFEGNDGDLRVFLTKRSSNL--SSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS  117 (245)
Q Consensus        59 ~l~~~~~g~~~vLL~rR~~~~--~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~  117 (245)
                      +|++..+|.+.|||++-.-..  +..-|-|++|.|-...|| ++..||.||.-||+||.++
T Consensus         9 LlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gE-dp~~AArREf~EE~Gi~vd   68 (161)
T COG4119           9 LLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGE-DPWLAARREFSEEIGICVD   68 (161)
T ss_pred             EEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCc-CHHHHHHHHhhhhhceeec
Confidence            345556788889998754321  223478999999999999 9999999999999999774

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.39  E-value=3.8e-07  Score=69.98  Aligned_cols=100  Identities=20%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             EEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEE
Q 025996           60 LFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPV  139 (245)
Q Consensus        60 l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~  139 (245)
                      +++ .+|  ++||+||... +.++|.|+||.--.+..+ + .+.+.+.+.+..|+.+...+.++.+.+.++.....+++|
T Consensus         4 i~~-~~~--~~Ll~kRp~~-gll~GLwefP~~e~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~   77 (114)
T PF14815_consen    4 IIR-SQG--RVLLEKRPEK-GLLAGLWEFPLIESDEED-D-EEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVY   77 (114)
T ss_dssp             EEE-TTS--EEEEEE--SS-STTTT-EE--EEE-SSS--C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEE
T ss_pred             EEE-eCC--EEEEEECCCC-ChhhcCcccCEeCccCCC-C-HHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEE
Confidence            444 456  8999999986 699999999997777444 3 444555555677777666667788888888888888888


Q ss_pred             EEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          140 IGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       140 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .+.+.....       .+-....|++++++.+-
T Consensus        78 ~~~~~~~~~-------~~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   78 EVEVSADPP-------AEPEEGQWVSLEELDQY  103 (114)
T ss_dssp             EEEEE-SS-----------TTEEEEEGGGGGGS
T ss_pred             EEEecCCCC-------CCCCCcEEEEHHHHhhC
Confidence            888775311       14577889999998763

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.07  E-value=5.5e-06  Score=69.23  Aligned_cols=118  Identities=24%  Similarity=0.204  Sum_probs=77.5

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-----C----ceecCCCCCCHHHHHHHHHHHHHCCCCCcc-
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-----P----GGKREENDADDAGTALREAKEEIGLDPSLV-  119 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-----P----GG~ve~gE~s~~~aA~REl~EEtGl~~~~~-  119 (245)
                      +.-+.|..|.+++ .++  ++||++|+..+-.+|+.|.-     |    +.-.+.+......||.|-++-|+||+...+ 
T Consensus        49 glLHRaFSVFlFn-s~~--~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~  125 (225)
T KOG0142|consen   49 GLLHRAFSVFLFN-SKN--ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVP  125 (225)
T ss_pred             hhhhheeeEEEec-Ccc--hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccC
Confidence            3445667777887 455  79999999998789998842     3    222222212468899999999999976654 


Q ss_pred             ----eEEEEeCCcc---cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          120 ----NVVTILDPIF---TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       120 ----~~lg~l~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                          .+++.+-+-.   ...|.+-.-|+-++..  +..+.+||+||.++.||+.++|...
T Consensus       126 pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~--~~~~nPnpnEv~e~ryvs~eelkel  183 (225)
T KOG0142|consen  126 PEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVK--DVTLNPNPNEVSEIRYVSREELKEL  183 (225)
T ss_pred             HHHcccceeeeeecCCCCCcccceeeEEEEEec--cCCCCCChhhhhHhheecHHHHHHH
Confidence                3444432221   2233333334433333  3456789999999999999988654

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.65  E-value=9.5e-05  Score=62.81  Aligned_cols=40  Identities=38%  Similarity=0.482  Sum_probs=36.3

Q ss_pred             EEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHC
Q 025996           68 LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIG  113 (245)
Q Consensus        68 ~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtG  113 (245)
                      ++++.+||+..     |.|++|||.+|+|| -+-++..||+.||.=
T Consensus       139 le~vavkr~d~-----~~WAiPGGmvdpGE-~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  139 LEFVAVKRPDN-----GEWAIPGGMVDPGE-KVSATLKREFGEEAM  178 (275)
T ss_pred             eEEEEEecCCC-----CcccCCCCcCCchh-hhhHHHHHHHHHHHH
Confidence            78888998876     89999999999999 899999999999953

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.68  E-value=0.009  Score=54.92  Aligned_cols=89  Identities=15%  Similarity=0.147  Sum_probs=52.8

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      ++||+||... +.+.|.|+||+.  +..+      .+++..|+.|+.......++.+.+.++.....++++.+.......
T Consensus       243 ~~~l~~r~~~-gl~~gl~~fP~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~~~~~~~~  313 (350)
T PRK10880        243 EVWLEQRPPS-GLWGGLFCFPQF--ADEE------ELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTG  313 (350)
T ss_pred             EEEEEECCcc-ChhhccccCCCC--cchh------hHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEEEcccccc
Confidence            7999999876 689999999963  2211      245566888876433333455555556555556666544432100


Q ss_pred             CCCCCCcccceeEEEEcccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                         ..+   ..+..|++++++.+-
T Consensus       314 ---~~~---~~~~~w~~~~~~~~~  331 (350)
T PRK10880        314 ---CMD---EGNGLWYNLAQPPSV  331 (350)
T ss_pred             ---ccC---CcCCeEechHHhccc
Confidence               011   123359998887763

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=96.36  E-value=0.054  Score=44.22  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             EEEEEEeCCCCC--CCCCCccC-CceecCCCCC--CHHH----HHHHHHHHHHCCC---CCcceEEEEeCCcccCCceEE
Q 025996           69 RVFLTKRSSNLS--SHSGEVAL-PGGKREENDA--DDAG----TALREAKEEIGLD---PSLVNVVTILDPIFTKNGIIV  136 (245)
Q Consensus        69 ~vLL~rR~~~~~--~~~G~w~f-PGG~ve~gE~--s~~~----aA~REl~EEtGl~---~~~~~~lg~l~~~~~~~~~~v  136 (245)
                      +||+..|-..-+  .--++.++ -|||+..++.  |..+    -+.||+.||+++.   ...+++||-...-...-+...
T Consensus        73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH  152 (203)
T COG4112          73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH  152 (203)
T ss_pred             EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence            899999976431  22356777 4999988762  2222    2679999999997   556778887765433222222


Q ss_pred             EEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          137 VPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       137 ~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      .-.++.+... ......-..+.-++.|+-+++|.+
T Consensus       153 iG~lf~~~~k-~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         153 IGALFLGRGK-FNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             EEEEEEeecc-ccceeeeecceeeeeeeeHHHHHH
Confidence            2223322211 111122334567788999988865

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=95.73  E-value=0.036  Score=46.45  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=43.4

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCC
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDP  116 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~  116 (245)
                      +.|+..-+|+++. ..+-++|||.+....      .+-+|||++.+|| +..++..|.+.+-+|...
T Consensus        41 GmRrsVe~Vllvh-~h~~PHvLLLq~~~~------~fkLPGg~l~~gE-~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   41 GMRRSVEGVLLVH-EHGHPHVLLLQIGNT------FFKLPGGRLRPGE-DEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             SSEEEEEEEEEEE-ETTEEEEEEEEETTT------EEE-SEEE--TT---HHHHHHHHHHHHHB-SS
T ss_pred             CCceEEEEEEEEe-cCCCcEEEEEeccCc------cccCCccEeCCCC-ChhHHHHHHHHHHcCCCc
Confidence            6777777777776 467789999996543      6899999999999 889999999999999764

...

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=95.64  E-value=0.0046  Score=55.64  Aligned_cols=97  Identities=24%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc-cCCceEEEEEEE-EeCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF-TKNGIIVVPVIG-ILPDR  146 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~-~~~~~~v~~~v~-~~~~~  146 (245)
                      ++||++-.     .+.-|.||-|++..+| +-.+||+||+.||||-+....-  -....+. ...+..+..|+. -+...
T Consensus        96 r~llv~g~-----qa~sw~fprgK~~kde-sd~~caiReV~eetgfD~skql--~~~e~Ie~nI~dq~~~~fIi~gvs~d  167 (348)
T KOG2937|consen   96 RCLLVKGW-----QASSWSFPRGKISKDE-SDSDCAIREVTEETGFDYSKQL--QDNEGIETNIRDQLVRLFIINGVSED  167 (348)
T ss_pred             hhheeece-----ecccccccCccccccc-hhhhcchhcccchhhcCHHHHh--ccccCcccchhhceeeeeeeccceee
Confidence            56666522     2345999999999999 7899999999999998765321  1111111 111112222221 11111


Q ss_pred             CCCCCCCCcccceeEEEEccccccccCC
Q 025996          147 NSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       147 ~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                      ..+.+.. --|++.+.|.-++++....+
T Consensus       168 ~~f~~~v-~~eis~ihW~~l~~l~~t~~  194 (348)
T KOG2937|consen  168 TNFNPRV-RKEISKIHWHYLDHLVPTDK  194 (348)
T ss_pred             eecchhh-hccccceeeeehhhhccccc
Confidence            1122222 25889999999999866544

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=94.43  E-value=0.17  Score=45.30  Aligned_cols=85  Identities=19%  Similarity=0.085  Sum_probs=55.4

Q ss_pred             ccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCcccCCceEEEEEEEEeCCCCC---CCCCCCccccee
Q 025996           86 VALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIFTKNGIIVVPVIGILPDRNS---FIPAPNTAEVDA  160 (245)
Q Consensus        86 w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~---~~~~~~~~Ev~~  160 (245)
                      +++-.|.++..= |..+-|.||..||.|+++.  .++....+..-...++-.-+-|.+.+.+...   ....-+.+|..+
T Consensus       286 lELcag~Vd~p~-s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IE  364 (405)
T KOG4432|consen  286 LELCAGRVDDPF-SDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIE  364 (405)
T ss_pred             eeeecccCCCCc-ccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceee
Confidence            344577887764 6788999999999998765  3444444444444555555556666654221   112345578889


Q ss_pred             EEEEccccccc
Q 025996          161 IFDAPLEMFLK  171 (245)
Q Consensus       161 v~wvpl~el~~  171 (245)
                      +.-+|++++..
T Consensus       365 vv~lsle~a~~  375 (405)
T KOG4432|consen  365 VVRLSLEDAPS  375 (405)
T ss_pred             EEEechhhhhH
Confidence            99999998755

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=90.75  E-value=0.69  Score=38.13  Aligned_cols=57  Identities=23%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCC
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL  114 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl  114 (245)
                      +.|+..-.|+|+. +..-++|||.+=...      ..-+|||.+++|| +-.+...|-+-|-+|=
T Consensus        67 gmRrsvegvlivh-eH~lPHvLLLQig~t------f~KLPGG~L~pGE-~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   67 GMRRSVEGVLIVH-EHNLPHVLLLQIGNT------FFKLPGGRLRPGE-DEADGLKRLLTESLGR  123 (221)
T ss_pred             hhhheeeeeEEEe-ecCCCeEEEEeeCCE------EEecCCCccCCCc-chhHHHHHHHHHHhcc
Confidence            5677666666665 344457777764332      5789999999999 8888999999999993

>PRK13910 DNA glycosylase MutY; Provisional

Probab=90.48  E-value=1.3  Score=39.85  Aligned_cols=71  Identities=13%  Similarity=0.046  Sum_probs=41.8

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      ++||+||.  .+.+.|+|+||+.  +  + .            .+...   ..++.+.+.++.....++++.+.+..   
T Consensus       198 ~~ll~kr~--~~l~~gl~~fP~~--~--~-~------------~~~~~---~~~~~~~H~fTH~~~~~~~~~~~~~~---  252 (289)
T PRK13910        198 QIALEKIE--QKLYLGMHHFPNL--K--E-N------------LEYKL---PFLGAIKHSHTKFKLNLNLYLAAIKD---  252 (289)
T ss_pred             EEEEEECC--CchhcccccCCCC--h--h-h------------hcccc---cccCceEEEEEeEEEEEEEEEEEecc---
Confidence            79999995  3589999999963  1  1 1            11111   12445555556556666666554421   


Q ss_pred             CCCCCCcccceeEEEEcccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                           .   -....|++++++.+-
T Consensus       253 -----~---~~~~~w~~~~~~~~~  268 (289)
T PRK13910        253 -----L---KNPIRFYSLKDLETL  268 (289)
T ss_pred             -----C---CccceEecHHHhhhc
Confidence                 0   123379998887653

>PF14443 DBC1: DBC1

Probab=87.60  E-value=0.81  Score=35.90  Aligned_cols=51  Identities=24%  Similarity=0.335  Sum_probs=36.1

Q ss_pred             EEEEEEEeCCCCCCCCCCccCC--ceecCCCCCCHHHHHHHHHHHHHCCCCCc
Q 025996           68 LRVFLTKRSSNLSSHSGEVALP--GGKREENDADDAGTALREAKEEIGLDPSL  118 (245)
Q Consensus        68 ~~vLL~rR~~~~~~~~G~w~fP--GG~ve~gE~s~~~aA~REl~EEtGl~~~~  118 (245)
                      +++|+.+|......-.|.|+--  ||--+.+...+..||+|=++|-|||+...
T Consensus         8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~   60 (126)
T PF14443_consen    8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN   60 (126)
T ss_pred             eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence            4555555555433445778544  66776666678999999999999999764

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=87.44  E-value=2  Score=38.31  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             EEEEEEeCCCCCCCCCCccCCc
Q 025996           69 RVFLTKRSSNLSSHSGEVALPG   90 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPG   90 (245)
                      ++|++||... +.+.|+|+||+
T Consensus       240 ~~~~~~r~~~-~~~~gl~~~p~  260 (275)
T TIGR01084       240 EVLLEQRPEK-GLWGGLYCFPQ  260 (275)
T ss_pred             eEEEEeCCCC-chhhccccCCC
Confidence            7999999876 58899999997

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=85.41  E-value=0.99  Score=40.50  Aligned_cols=59  Identities=14%  Similarity=0.162  Sum_probs=42.3

Q ss_pred             ccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--cCCceEEEEEEEEeCC
Q 025996           86 VALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF--TKNGIIVVPVIGILPD  145 (245)
Q Consensus        86 w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~--~~~~~~v~~~v~~~~~  145 (245)
                      +++-||.+|..- |+.+-|..|+.||.|+.+....++..+....  ..++...+.|.+.+.+
T Consensus        81 ielc~g~idke~-s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e  141 (405)
T KOG4432|consen   81 IELCAGLIDKEL-SPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE  141 (405)
T ss_pred             eeeecccccccc-CHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence            456689999876 9999999999999999877655554443332  2345556667776664

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=84.75  E-value=1.8  Score=39.65  Aligned_cols=82  Identities=18%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             CCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEe
Q 025996           64 NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        64 ~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      .+|  .+++.||... +.+.|+|+||....+.+        ..+..-+.++..   +.++.+.+.++.....+. +.+..
T Consensus       245 ~~~--~~~l~kr~~~-gl~~gl~~fP~~e~~~~--------~~~~~~~~~~~~---~~~~~~~H~fth~~l~i~-~~a~~  309 (342)
T COG1194         245 RDG--EVLLEKRPEK-GLLGGLWCFPQFEDEAD--------LLDWLAADGLAA---EPLGAFRHTFTHFRLTIE-LRASA  309 (342)
T ss_pred             cCc--chhhhhCccc-Cceecccccccccccch--------hhhHhhhccccc---ccccceeeeeeEEEEEEE-EEeec
Confidence            355  7899999876 58999999998655431        122223334433   445666665555555555 22221


Q ss_pred             CCCCCCCCCCCcccceeEEEEccccccc
Q 025996          144 PDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      ..        . ..  +..|++++++..
T Consensus       310 ~~--------~-~~--~~~w~~~~~~~~  326 (342)
T COG1194         310 SL--------V-LS--DGRWYNLSDLES  326 (342)
T ss_pred             cc--------C-CC--Cceecccccccc
Confidence            10        1 12  678999888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
1nqy_A	194	The Structure Of A Coa Pyrophosphatase From D. Radi		7e-12

>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans Length = 194

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 52  KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
           +RAAVLV L    + D RV LT RSS L +H G++A PGG  +  +      ALREA+EE
Sbjct: 34  RRAAVLVALT--READPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQA-ALREAQEE 90
Query: 112 IGLDPSLVNVVTILDPIFT 130
           + LDP+ V ++  LD +FT
Sbjct: 91  VALDPAAVTLLGELDDVFT 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	5e-64
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	2e-09
3grn_A	153	MUTT related protein; structural genomics, hydrola	6e-07
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	2e-06
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	5e-06
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	7e-06
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	9e-06
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	1e-05
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	3e-05
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	3e-05
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	4e-05
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	4e-05
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	5e-05
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	6e-05
2fb1_A	226	Conserved hypothetical protein; structural genomic	6e-05
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	8e-05
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	9e-05
3exq_A	161	Nudix family hydrolase; protein structure initiati	9e-05
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	1e-04
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	1e-04
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-04
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	3e-04
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	3e-04
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	3e-04
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	4e-04
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	4e-04
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	4e-04
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	6e-04
3f13_A	163	Putative nudix hydrolase family member; structural	6e-04

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score =  197 bits (502), Expect = 5e-64
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 52  KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
           +RAAVLV L    + D RV LT RSS L +H G++A PGG  +  +      ALREA+EE
Sbjct: 34  RRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEE 90

Query: 112 IGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171
           + LDP+ V ++  LD +FT  G  V PV+G +    +      T EV  I    L     
Sbjct: 91  VALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAP-EALDTLRVTPEVAQIITPTLAELRA 149

Query: 172 DENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVA 215
               R       G +  L+ + +        IW +TA +L ++ 
Sbjct: 150 VPLVRERRTLPDGTEVPLYRYPW----RGLDIWGMTARVLHDLL 189

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp} Length = 232

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 22/100 (22%), Positives = 40/100 (40%)

Query: 52  KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
           ++AA LV + +G + D+ V + +R+  +    G VA PGG  + +DA+ A  A       
Sbjct: 8   RKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCA 67

Query: 112 IGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIP 151
              D   + V  + +       ++ V             P
Sbjct: 68  EDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDTPLAP 107

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 48  SSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALRE 107
           S  K     +  L     G     L +RS N  +++G+  LPGGK   +++       RE
Sbjct: 2   SLEKPYIISVYALIRNEKG--EFLLLRRSENSRTNAGKWDLPGGKVNPDESLKE-GVARE 58

Query: 108 AKEEIGLDPSLVNVVTILDPIFTKNGIIVV 137
             EE G+     ++   ++   T+  +I +
Sbjct: 59  VWEETGITMVPGDIAGQVNFELTEKKVIAI 88

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 28  QNPVTEREAVDSQDS------YSVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRS----- 76
           +  V + +A+ + ++                   +           L + L KRS     
Sbjct: 5   EEFVNKEDALKNYNAKEFRTPDGYTSD-----MILTTVKELNGKPTLHILLIKRSLTNAE 59

Query: 77  SNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLDPSLVNVVTILDPIF 129
              +   G+ A+PGG  +EN  A+ A  A RE +EE  L    +    + D   
Sbjct: 60  GKPNMEGGKWAVPGGFVDENESAEQA--AERELEEETSLTDIPLIPFGVFDKPG 111

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 53  RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEI 112
           R A +      N+   ++ L + +      S   + P GK  +++ +D    +RE KEEI
Sbjct: 7   RGAAIF-----NENLSKILLVQGT-----ESDSWSFPRGKISKDE-NDIDCCIREVKEEI 55

Query: 113 GLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAI 161
           G D +             +     + +I  + +  +F P     E+D I
Sbjct: 56  GFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRN-EIDKI 103

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 51  KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKE 110
           ++   VLV  F   + + +  +  R+      +       G  E+ +   + TA RE+ E
Sbjct: 3   RQPFQVLVIPFIKTEANYQFGVLHRT-----DADVWQFVAGGGEDEE-AISETAKRESIE 56

Query: 111 EIGLDP-----SLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTA-EVDAI--- 161
           E+ LD      SL +  +I +  F+ N   VVP      D  S       + E   +   
Sbjct: 57  ELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWV 116

Query: 162 -FDAPLEMFLKDENRRA 177
            +++ +++   D N+ A
Sbjct: 117 SYESAIQLLEWDSNKTA 133

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 48  SSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALRE 107
           S+  ++  ++  L + NDG     L K + N     G+ AL GG  E  +  +     RE
Sbjct: 22  SNAMRQRTIVCPLIQ-NDG--CYLLCKMADNRGVFPGQWALSGGGVEPGERIEE-ALRRE 77

Query: 108 AKEEIGLDPSLVNVVT 123
            +EE+G    L ++  
Sbjct: 78  IREELGEQLILSDITP 93

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 20/108 (18%)

Query: 24  NERHQNPVTEREAVDSQDSY--------SVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKR 75
              ++   +  E +              S+ V        VL+C +      L+V L +R
Sbjct: 11  KNYYERQASLAEFLTWYHQQELPEYEKPSLTVD------MVLLC-YNKEADQLKVLLIQR 63

Query: 76  SSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLDPSLVNVV 122
             +        ALPGG    N   +D+   LRE KEE G+  S  N+ 
Sbjct: 64  KGH--PFRNSWALPGGFVNRNESTEDS--VLRETKEETGVVISQENIE 107

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 53  RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEI 112
           +AA LV ++    G +   L + S            P G  +  + D+   A+RE KEE 
Sbjct: 4   KAAGLV-IYRKLAGKIEFLLLQASYP----PHHWTPPKGHVDPGE-DEWQAAIRETKEEA 57

Query: 113 GLDPSLVNVVTILDPIFT----KNGIIVVPVIGILPDRNSFIPAPNTAEVDAI 161
            +    + +                  V   +  L + +       + E    
Sbjct: 58  NITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQL---SHEHQNW 107

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGG---KREENDADDAGTALREAKEE 111
            V   LF  +D  L+V L +RS++     G   LPGG   +  +   +     LR+  E+
Sbjct: 24  TVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDESLEQT--VLRKLAEK 79

Query: 112 IGLD-PSLVNVVTILDPIFTKNG-IIVVPVIGILPDRNSFIPAPNTAE 157
             +  P +  + T+ +      G  + V    ++  +   I   + ++
Sbjct: 80  TAVVPPYIEQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSD 127

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 21/153 (13%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIG 113
                + + +    +V L ++        G    PGGK E      +     RE  EE G
Sbjct: 6   VTNCIVVDHD----QVLLLQKPRR-----GWWVAPGGKMEAGESILET--VKREYWEETG 54

Query: 114 LDPSLVNVVTILDPIFTKNGIIVVPVIGIL--PDRNSFIPAPNTAEVDAIFDAPLEMFLK 171
           +      +  I   +    G IV   +        +       + E    +    E  + 
Sbjct: 55  ITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDE--VL 112

Query: 172 DENRRAEEREWMGY-----KYLLHFFDYEAEGN 199
           +    A ++    +     + L   F Y  +  
Sbjct: 113 ELPMAAGDKWIFKHVLHSDRLLYGTFHYTPDFE 145

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 51  KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKE 110
           + R A  + +      +  + L +  +      G   LPGG+ E  +  +     RE  E
Sbjct: 16  QTRYAAYIIVS--KPENNTMVLVQAPN------GAYFLPGGEIEGTETKEE-AIHREVLE 66

Query: 111 EIGLDPSLVNVVTILDPIFTKNG 133
           E+G+   +   +   D  F  N 
Sbjct: 67  ELGISVEIGCYLGEADEYFYSNH 89

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 17/85 (20%)

Query: 50  TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSG---EVALPGGKREENDADDAGTAL- 105
           + K   V+  +    +   +    +R     S++    E   PGGK EE ++     AL 
Sbjct: 2   SLKSIEVVAAVIRLGE---KYLCVQRGQTKFSYTSFRYE--FPGGKVEEGESLQE--ALQ 54

Query: 106 REAKEEIGLDPSLVNVVTILDPIFT 130
           RE  EE+         + + + + T
Sbjct: 55  REIMEEMDYV------IEVGEKLLT 73

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 6/124 (4%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIG 113
            +   +F  N+G++ + L KR+       GE +L GG  +++   DDA  A R   E  G
Sbjct: 15  GIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDESVDDA--AKRVLAELTG 70

Query: 114 LDP-SLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172
           L+   +  V             +V      L + N +             +      L  
Sbjct: 71  LENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIF 130

Query: 173 ENRR 176
           ++  
Sbjct: 131 DHPE 134

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 69  RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI 128
           +V L            ++   GG  E N+       +REAKEE GL+ +L N + I    
Sbjct: 18  KVLLHLHKKA-----KKMLPLGGHIEVNE-LPEEACIREAKEEAGLNVTLYNPIDINLKK 71

Query: 129 FTKNGIIVVPVIGILPDRNSFIPA 152
                   + +  I        P 
Sbjct: 72  SCDLSGEKLLINPIHTILGDVSPN 95

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 69  RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI 128
           +V L K         G    PGG  E N+        RE +EE G+    +     +   
Sbjct: 13  KVLLVKHKRL-----GVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTYGIIDE 66

Query: 129 FTKNGIIVVPVIGILPDR 146
                 + + ++  +   
Sbjct: 67  NAVERPMPLVILEEVVKY 84

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 48  SSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALR 106
           + T+    V + +    +   RV +  + +         + PGG  E       A  A+R
Sbjct: 4   TRTQPVELVTMVMVTDPETQ-RVLVEDKVNV--PWKAGHSFPGGHVEVGEPCATA--AIR 58

Query: 107 EAKEEIGLDPSLVNVVTILD-PIFTKNGIIVVPV 139
           E  EE GL  S V      +     +    +  +
Sbjct: 59  EVFEETGLRLSGVTFCGTCEWFDDDRQHRKLGLL 92

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 8   DRSERLETLVQRLR-------LYNERHQNPVTEREAVDSQDSYSVAVSSTKKRAAVLVCL 60
            R+  +  +V RL           E ++   +  E        +V  +   +   V +  
Sbjct: 66  SRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNG 125

Query: 61  FEGNDGDLRVFLTKRSSNLSSHSG--EVALPGGKREENDADDAGTALREAKEEIGLDPSL 118
           + G   DL +++ +RS + S   G  +  + GG+  +         ++E  EE  L  +L
Sbjct: 126 YVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQN--LIKECAEEADLPEAL 183

Query: 119 VNVVTIL--------DPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLE 167
                 +         P   K   + +  + +  D   F P     E+      P  
Sbjct: 184 ARQAIPVGAITYCMESPAGIKPDTLFLYDLALPED---FRPHNTDGEMADFMLWPAA 237

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 64  NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVV 122
           ++  +   L + S            P G  E  + DD  TALR  +EE G++   + ++
Sbjct: 25  DNNAIEFLLLQASDG----IHHWTPPKGHVEPGE-DDLETALRATQEEAGIEAGQLTII 78

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 64  NDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLD---PSLV 119
           +    RV +  R+   ++     A PGG  E +    ++   +RE  EE GL    P LV
Sbjct: 17  DLETQRVVMQYRAPE-NNRWSGYAFPGGHVENDEAFAES--VIREIYEETGLTIQNPQLV 73

Query: 120 NVVT 123
            +  
Sbjct: 74  GIKN 77

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 67  DLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLDPSLVNVVTIL 125
           D R+ L KR       +G   LPGGK +     + A    RE +EE+G+      ++ ++
Sbjct: 39  DGRILLIKRKRAP--EAGCWGLPGGKVDWLEPVERA--VCREIEEELGIALERATLLCVV 94

Query: 126 DPIFTKNGIIVV 137
           D I   NG   V
Sbjct: 95  DHIDAANGEHWV 106

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 54  AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEI 112
           A  ++      +    + L +R          +ALPGG  E     ++A  A RE +EE 
Sbjct: 11  ATDVIIRLWDGENFKGIVLIERKY----PPVGLALPGGFVEVGERVEEA--AAREMREET 64

Query: 113 GLDPSLVNVVTILD 126
           GL+  L  ++ +  
Sbjct: 65  GLEVRLHKLMGVYS 78

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 66  GDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEEIGLDPSLVNVVTI 124
            +  + + +R ++        ALPGG  E +     A   +RE  EE  ++ +   +   
Sbjct: 217 VNDHILMVQRKAH--PGKDLWALPGGFLECDETIAQA--IIRELFEETNINLTHEQLAIA 272

Query: 125 LDPIFT 130
                 
Sbjct: 273 KRCEKV 278

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 20/80 (25%)

Query: 54  AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSG--EVALPGGKREENDADDAGTAL-REAKE 110
             ++       + +  +F+T+R+++ +  +   E   PGGK E  +  +   A+ RE +E
Sbjct: 8   VGIIR------NENNEIFITRRAAD-AHMANKLE--FPGGKIEMGETPEQ--AVVRELQE 56

Query: 111 EIGLDPSLVNVVTILDPIFT 130
           E+G+                
Sbjct: 57  EVGIT------PQHFSLFEK 70

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 16/82 (19%)

Query: 53  RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREAKEE 111
           RA  L+      +   ++ +TK         G+    GG  + N   +DA   +RE KEE
Sbjct: 21  RATALIV----QNH--KLLVTKDK-------GKYYTIGGAIQVNESTEDA--VVREVKEE 65

Query: 112 IGLDPSLVNVVTILDPIFTKNG 133
           +G+      +  +++  F  +G
Sbjct: 66  LGVKAQAGQLAFVVENRFEVDG 87

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 60  LFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV 119
             +     + V +  R         + + P GK E+N+      A+RE  EE G    L 
Sbjct: 30  SAQEQLDSIEVCIVHRP-----KYDDWSWPKGKLEQNE-THRHAAVREIGEETGSPVKLG 83

Query: 120 NVVTILDPIFTKNGIIVVPVIGILPDRNS---FIPAPNTAEVDAIFDAPLEMFLKDENRR 176
             +  ++   ++ G           D      ++  P +A+             + +   
Sbjct: 84  PYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGE 143

Query: 177 AEEREWMGYKYLLHFFDYEAE 197
             +  W+  +       +  +
Sbjct: 144 INDIVWVSVREARKILSHSTD 164

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 50  TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREEN-DADDAGTALREA 108
              R   LV + +      RV L  +       +G     GGK +E    +D   A RE 
Sbjct: 22  GASRLYTLVLVLQPQ----RVLLGMKKRGF--GAGRWNGFGGKVQEGETIEDG--ARREL 73

Query: 109 KEEIGLDPSLVNVVTILD-PIFTKNGIIVVPV 139
           +EE GL    ++ V  +      +  ++ V V
Sbjct: 74  QEESGLTVDALHKVGQIVFEFVGEPELMDVHV 105

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 36/188 (19%)

Query: 51  KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKE 110
           KKRAA L      ++ +  V L   S     H     +PGG  E  + + +  A+RE  E
Sbjct: 40  KKRAACLCFR---SESEEEVLLVSSSR----HPDRWIVPGGGMEP-EEEPSVAAVREVCE 91

Query: 111 EIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL 170
           E G+  +L  +V I +    K+   V  +I              T  ++   D+      
Sbjct: 92  EAGVKGTLGRLVGIFENQERKHRTYVYVLI-------------VTEVLEDWEDSVNI--- 135

Query: 171 KDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVAS--VVHQCPPAFQER 228
                   +REW   +  +    Y           L  G   N  +  V      + Q  
Sbjct: 136 ------GRKREWFKIEDAIKVLQYHKPVQASYFETLRQGYSANNGTPVVATTYSVSAQSS 189

Query: 229 RPKFWSGL 236
                SG+
Sbjct: 190 ----MSGI 193

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 19/86 (22%)

Query: 48  SSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALRE 107
           S   +RA  ++      +    V +T          G   LPGGK    +       +RE
Sbjct: 13  SDLARRATAII------EMPDGVLVTASRG------GRYNLPGGKANRGELRSQ-ALIRE 59

Query: 108 AKEEIGLDPSLVNVVTILDPIFTKNG 133
            +EE GL       +  +  +F    
Sbjct: 60  IREETGLR------INSMLYLFDHIT 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.96
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.8
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.8
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.79
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.79
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.78
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.77
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.77
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.77
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.77
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.77
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.77
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.77
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.77
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.76
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.76
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.76
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.75
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.75
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.75
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.75
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.75
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.74
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.74
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.74
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.74
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.74
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.74
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.74
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.74
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.74
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.73
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.73
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.73
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.73
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.73
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.73
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.72
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.71
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.71
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.71
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.71
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.7
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.7
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.7
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.69
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.69
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.69
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.69
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.68
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.67
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.67
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.67
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.67
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.67
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.66
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.66
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.66
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.66
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.65
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.65
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.65
3f13_A	163	Putative nudix hydrolase family member; structural	99.64
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.64
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.63
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.62
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.6
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.58
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.58
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.57
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.56
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.52
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.49
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.36
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.01
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.96
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.66

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.96  E-value=1.4e-29  Score=210.56  Aligned_cols=161  Identities=34%  Similarity=0.493  Sum_probs=121.9

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      +.+.++|++++ + .+|+.+|||++|+..++.++|.|+||||++|+|| ++++||+||++||||+++..+++++.+....
T Consensus        32 ~~~~~~~~v~i-~-~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~  108 (194)
T 1nqz_A           32 HYRRAAVLVAL-T-READPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEEVALDPAAVTLLGELDDVF  108 (194)
T ss_dssp             -CEEEEEEEEE-E-SSSSCBBCEEEEC------CCCEECSEEECCTTC-CHHHHHHHHHHHHHCCCGGGCEEEEECCCEE
T ss_pred             CCceEEEEEEE-e-cCCCeEEEEEEecCCCCCCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEccCcc
Confidence            45566666655 4 4565689999999876678999999999999999 9999999999999999999999999988766


Q ss_pred             cCCceEEEEEEEEeCCCCCCC-CCCCcccceeEEEEccccc-cccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechh
Q 025996          130 TKNGIIVVPVIGILPDRNSFI-PAPNTAEVDAIFDAPLEMF-LKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALT  207 (245)
Q Consensus       130 ~~~~~~v~~~v~~~~~~~~~~-~~~~~~Ev~~v~wvpl~el-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~T  207 (245)
                      +..+..++.|++.+...  .. ...+++|+.++.|++++++ .+...+....+ +.+..+.+++|.+    +++.|||+|
T Consensus       109 ~~~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~iWg~t  181 (194)
T 1nqz_A          109 TPVGFHVTPVLGRIAPE--ALDTLRVTPEVAQIITPTLAELRAVPLVRERRTL-PDGTEVPLYRYPW----RGLDIWGMT  181 (194)
T ss_dssp             ETTTEEEEEEEEEECGG--GGGGCCCCTTEEEEECCBHHHHHHSCCEEEEEEC-TTSCEEEEEEEEE----TTEEEEHHH
T ss_pred             CCCCeEEEEEEEEecCC--ccccCCCccceeEEEEEEHHHhccCCCcceeEEe-cCCcEEEEEEecc----CCcEEehhH
Confidence            66677888888887632  22 3467789999999999999 88766544332 2455677888888    478999999


Q ss_pred             HHHHHHHHHHHhC
Q 025996          208 AGILINVASVVHQ  220 (245)
Q Consensus       208 a~il~~~~~~~~~  220 (245)
                      |+||++++.++.|
T Consensus       182 a~il~~~~~~~~~  194 (194)
T 1nqz_A          182 ARVLHDLLEQGPG  194 (194)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999987754

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.80  E-value=5.4e-19  Score=140.72  Aligned_cols=114  Identities=22%  Similarity=0.195  Sum_probs=89.0

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      .+.+|.+++++ .++  +|||++|....+.++|.|+||||++|+|| ++.+||+||++||||+.+....+++.+...++.
T Consensus         7 ~~~~v~~vi~~-~~~--~vLL~~r~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~   82 (153)
T 3grn_A            7 YIISVYALIRN-EKG--EFLLLRRSENSRTNAGKWDLPGGKVNPDE-SLKEGVAREVWEETGITMVPGDIAGQVNFELTE   82 (153)
T ss_dssp             EEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSS
T ss_pred             eEEEEEEEEEc-CCC--cEEEEEEcCCCCCCCCeEECceeecCCCC-CHHHHHHhhhhhhhCcEeecceEEEEEEEecCC
Confidence            34566666665 355  79999999876688999999999999999 999999999999999999988888887655555


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ....+..|.+.....   .+.+ .+|+.++.|++++++.+..
T Consensus        83 ~~~~~~~~~~~~~~~---~~~~-~~e~~~~~W~~~~el~~~~  120 (153)
T 3grn_A           83 KKVIAIVFDGGYVVA---DVKL-SYEHIEYSWVSLEKILGME  120 (153)
T ss_dssp             CEEEEEEEEEEECCC---CCCC-CTTEEEEEEECHHHHTTCS
T ss_pred             ceEEEEEEEEEecCC---cEec-CCCcceEEEEEHHHhhhcc
Confidence            555556666655432   2223 3799999999999998754

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.80  E-value=5.8e-19  Score=141.67  Aligned_cols=113  Identities=21%  Similarity=0.274  Sum_probs=85.8

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      ...+.+|.+++++  ++  +|||++|...  .++|.|+||||++|+|| ++.+||+||++|||||.+....+++.+...+
T Consensus        26 ~~~~~~v~~vi~~--~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   98 (157)
T 4dyw_A           26 EQPRVGCGAAIVR--DG--RILLIKRKRA--PEAGCWGLPGGKVDWLE-PVERAVCREIEEELGIALERATLLCVVDHID   98 (157)
T ss_dssp             CCCEEEEEEEEEE--TT--EEEEEEECSS--SSTTCEECCEEECCTTC-CHHHHHHHHHHHHHSCEEESCEEEEEEEEEE
T ss_pred             CCceeEEEEEEEE--CC--EEEEEEecCC--CCCCEEECCcccCCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEeec
Confidence            4456777776776  45  8999999965  47899999999999999 9999999999999999998888888876655


Q ss_pred             cCCc--eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          130 TKNG--IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       130 ~~~~--~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      ....  .....|.+.+... . ....+++|+.++.|++++++.+
T Consensus        99 ~~~~~~~~~~~f~~~~~~~-~-~~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A           99 AANGEHWVAPVYLAHAFSG-E-PRVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             TTTTEEEEEEEEEESEEES-C-CCCSCTTTEEEEEEEETTSCCS
T ss_pred             cCCCcEEEEEEEEEEEcCC-C-cccCCCCcEeEEEEECHHHccc
Confidence            3223  3344455544322 1 1123568999999999999976

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.79  E-value=1.2e-18  Score=136.75  Aligned_cols=100  Identities=15%  Similarity=0.051  Sum_probs=79.0

Q ss_pred             CCcEEEEEEEeCCCCCC--CCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEE
Q 025996           65 DGDLRVFLTKRSSNLSS--HSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGI  142 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~--~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~  142 (245)
                      +|  +|||+||.... .  ++|.|+||||++|+|| ++.+||+||++||||+.+....+++.+...++.....++.|.+.
T Consensus        16 ~~--~vLL~~r~~~~-~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~   91 (140)
T 3gwy_A           16 GE--KYLCVQRGQTK-FSYTSFRYEFPGGKVEEGE-SLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLCH   91 (140)
T ss_dssp             TT--EEEEEEC----------CCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEEEEEEEEE
T ss_pred             CC--EEEEEEecCCC-CCCCCCeEECCCccCCCCC-CHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEEEEEEEEE
Confidence            45  89999998863 3  8899999999999999 99999999999999999988888888876666666777778877


Q ss_pred             eCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          143 LPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       143 ~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      +...     .++++|+.++.|++++++.+..
T Consensus        92 ~~~~-----~~~~~E~~~~~W~~~~el~~~~  117 (140)
T 3gwy_A           92 PVGQ-----RYVLKEHIAAQWLSTREMAILD  117 (140)
T ss_dssp             ECCS-----CCCCCSSCEEEEECHHHHTTSC
T ss_pred             ecCC-----cccccccceeEeccHHHHhhCC
Confidence            7642     2345799999999999987743

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.79  E-value=1.1e-18  Score=142.62  Aligned_cols=115  Identities=15%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI  128 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~  128 (245)
                      +..+.++.+++++ .+|  +|||++|+.....++|.|+| |||++|+|| ++.+||+||++||||+....+..++.+...
T Consensus        34 ~~~~~~~~v~i~~-~~~--~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~  109 (180)
T 2fkb_A           34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQADE-QLLESARREAEEELGIAGVPFAEHGQFYFE  109 (180)
T ss_dssp             TCCEEEEEEEEEC-SSS--CEEEEEECSSCSSSTTCEESSBCCBCBTTC-CHHHHHHHHHHHHHCCBSCCCEEEEEEEEE
T ss_pred             CceeeEEEEEEEC-CCC--EEEEEECCCCCccCCCcEEeecCCCCCCCC-CHHHHHHHHHHHHHCCCccceEEEEEEEec
Confidence            4455677776665 355  79999998776567999999 999999999 999999999999999988888888876544


Q ss_pred             ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .......++.|.+...    ..+.++++|+.++.|++++++.+.
T Consensus       110 ~~~~~~~~~~f~~~~~----~~~~~~~~E~~~~~W~~~~el~~~  149 (180)
T 2fkb_A          110 DKNCRVWGALFSCVSH----GPFALQEDEVSEVCWLTPEEITAR  149 (180)
T ss_dssp             ETTEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHTT
T ss_pred             CCCceEEEEEEEEecC----CCcCCChhHhheEEEecHHHHHHH
Confidence            3333444555555522    223457789999999999998864

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.78  E-value=2.3e-18  Score=137.28  Aligned_cols=115  Identities=23%  Similarity=0.215  Sum_probs=86.5

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCC--CCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSN--LSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~--~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      .+.++.+++++ .++  +|||++|...  ...++|.|+||||++|.|| ++.+||+||++||||+.+..+.+++.+...+
T Consensus        12 ~~~~~~~vi~~-~~~--~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~   87 (159)
T 1sjy_A           12 ELRAAGVVLLN-ERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETGLRVRPVKFLGAYLGRF   87 (159)
T ss_dssp             CEEEEEEEEBC-TTC--CEEEEEESCC----CCCCCEECSEEECCTTS-CHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred             EEEeEEEEEEe-CCC--CEEEEEecccCcCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHHCccceeeEEEEEEeccc
Confidence            34555555565 345  7999999862  3467899999999999999 9999999999999999998888888776544


Q ss_pred             cC-CceEEEEEEEEeCCCCCCCCCC-CcccceeEEEEcccccccc
Q 025996          130 TK-NGIIVVPVIGILPDRNSFIPAP-NTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~~-~~~~v~~~v~~~~~~~~~~~~~-~~~Ev~~v~wvpl~el~~~  172 (245)
                      +. ....++.|.+.+....  .+.+ +++|+.++.|+|++++.+.
T Consensus        88 ~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  130 (159)
T 1sjy_A           88 PDGVLILRHVWLAEPEPGQ--TLAPAFTDEIAEASFVSREDFAQL  130 (159)
T ss_dssp             TTSCEEEEEEEEEEECSSC--CCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             CCCceEEEEEEEEEccCCC--ccccCCCCceeEEEEecHHHHHHh
Confidence            33 3456666777665321  1344 6789999999999998764

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.77  E-value=1.8e-18  Score=139.37  Aligned_cols=114  Identities=16%  Similarity=0.158  Sum_probs=83.8

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      .+.+|.+++++..++  +|||++|..  ..|.|.|+||||++|+|| ++.+||+||++||||+.+...++++.+......
T Consensus         9 ~~~~v~~vi~~~~~~--~vLL~~r~~--~~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   83 (161)
T 3exq_A            9 VELVTMVMVTDPETQ--RVLVEDKVN--VPWKAGHSFPGGHVEVGE-PCATAAIREVFEETGLRLSGVTFCGTCEWFDDD   83 (161)
T ss_dssp             EEEEEEEEEBCTTTC--CEEEECCCC--CTTTCSBBCCCCBCCTTS-CHHHHHHHHHHHHHCCEESCCEEEEEEEEECSS
T ss_pred             ceEEEEEEEEeCCCC--EEEEEEccC--CCCCCCEEccceecCCCC-CHHHHHHHHHHHhhCcEecCCcEEEEEecccCC
Confidence            355565555553224  799999984  478889999999999999 999999999999999999988888887665533


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .+..+..+++.+... ..  .++..|+.++.|+|++++.+..
T Consensus        84 ~~~~~~~~~~~~~~~-~~--~~~~~e~~~~~W~~~~el~~~~  122 (161)
T 3exq_A           84 RQHRKLGLLYRASNF-TG--TLKASAEGQLSWLPITALTREN  122 (161)
T ss_dssp             CSSEEEEEEEEECCE-ES--CCCGGGTTTEEEECGGGCCTTT
T ss_pred             CCeEEEEEEEEEecc-CC--ccCCCccceEEEeeHHHhhhCc
Confidence            333344444444321 11  2456788999999999997643

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.77  E-value=7.4e-19  Score=138.12  Aligned_cols=103  Identities=26%  Similarity=0.287  Sum_probs=75.2

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc-
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG-  133 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~-  133 (245)
                      |+.+++++  +|  +|||++|..      |.|+||||++|+|| |+.+||+||++||||+.+..+.+++.....+...+ 
T Consensus         6 aag~vv~~--~~--~vLL~~r~~------g~W~~PgG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~   74 (134)
T 3i7u_A            6 SAGGVLFK--DG--EVLLIKTPS------NVWSFPKGNIEPGE-KPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGE   74 (134)
T ss_dssp             EEEEEEEE--TT--EEEEEECTT------SCEECCEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTE
T ss_pred             EEEEEEEE--CC--EEEEEEeCC------CcEECCeeEecCCC-CHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCc
Confidence            33334454  45  899999753      68999999999999 99999999999999999888888887655443322 


Q ss_pred             ---eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 ---IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ---~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                         ..++.|.+....   ..+.++ +|+.++.|+|++++.+.
T Consensus        75 ~~~~~~~~f~~~~~~---~~~~~~-~E~~~~~W~~~~e~~~~  112 (134)
T 3i7u_A           75 RIFKTVKYYLMKYKE---GEPRPS-WEVKDAKFFPIKEAKKL  112 (134)
T ss_dssp             EEEEEEEEEEEEEEE---ECCCCC-TTSSEEEEEEHHHHHHH
T ss_pred             eEEEEEEEEEEEEcC---CcCcCC-hhheEEEEEEHHHHhhh
Confidence               233445554432   223344 79999999999998764

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.77  E-value=2.9e-18  Score=136.15  Aligned_cols=107  Identities=16%  Similarity=0.182  Sum_probs=82.5

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc-C
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT-K  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~-~  131 (245)
                      +.+|.+++.+  ++  +|||++|..   .++|.|+||||++|+|| |+.+||+||++||||+.+....+++....... .
T Consensus         5 ~~~v~~ii~~--~~--~vLl~~r~~---~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   76 (153)
T 3shd_A            5 HVTVACVVHA--EG--KFLVVEETI---NGKALWNQPAGHLEADE-TLVEAAARELWEETGISAQPQHFIRMHQWIAPDK   76 (153)
T ss_dssp             EEEEEEEEEE--TT--EEEEEEEEE---TTEEEEECSEEECCTTC-CHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTS
T ss_pred             ceEEEEEEEe--CC--EEEEEEecC---CCCCCEECCeEEeCCCC-CHHHHHHHHHHHHHCcccccCcEEEEEEEecCCC
Confidence            4555554443  45  899999972   45789999999999999 99999999999999999998888887744332 3


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccc
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMF  169 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el  169 (245)
                      .....+.|++.+....  ...++.+|+.++.|++++++
T Consensus        77 ~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el  112 (153)
T 3shd_A           77 TPFLRFLFAIELEQIC--PTQPHDSDIDCCRWVSAEEI  112 (153)
T ss_dssp             CCEEEEEEEEECSSCC--CCCCCSTTCCEEEEECHHHH
T ss_pred             ceEEEEEEEEEccccC--cCCCCcccceeeEEecHHHh
Confidence            3445566777665432  23467789999999999999

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.77  E-value=5.2e-19  Score=140.13  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=74.7

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .+|.+++++ .++  +|||++|... ...++.|+||||++|+|| ++++||+||++||||+.+..+..++.+........
T Consensus         6 ~~v~vi~~~-~~~--~vLLv~~~r~-~~~~~~w~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~   80 (145)
T 2w4e_A            6 RAVFILPVT-AQG--EAVLIRQFRY-PLRATITEIVAGGVEKGE-DLGAAAARELLEEVGGAASEWVPLPGFYPQPSISG   80 (145)
T ss_dssp             EEEEEEEEE-TTS--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCC
T ss_pred             CEEEEEEEc-CCC--EEEEEEEEec-CCCCCEEEeCCccCCCCC-CHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccC
Confidence            456665665 455  6777665432 134578999999999999 99999999999999999887777776543333333


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..++.|++..... . ...++++|+.++.|+|++++.+.
T Consensus        81 ~~~~~f~~~~~~~-~-~~~~~~~E~~~~~w~~~~el~~~  117 (145)
T 2w4e_A           81 VVFYPLLALGVTL-G-AAQLEDTETIERVVLPLAEVYRM  117 (145)
T ss_dssp             CEEEEEEEEEEEE-C---------CEEEEEEEHHHHHHH
T ss_pred             ceEEEEEEEeccc-C-CCCCCCCCeEEEEEEeHHHHHHH
Confidence            4566666653211 1 23457789999999999998764

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.77  E-value=1.7e-18  Score=138.11  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=81.6

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .+|.+++++ .++  +|||++|...  .++|.|+||||++|.|| ++.+||+||++||||+.+....+++.+...   ..
T Consensus        21 ~~v~~~i~~-~~~--~vLl~~r~~~--~~~~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~   91 (156)
T 3gg6_A           21 YVVLAVFLS-EQD--EVLLIQEAKR--ECRGSWYLPAGRMEPGE-TIVEALQREVKEEAGLHCEPETLLSVEERG---PS   91 (156)
T ss_dssp             EEEEEECBC-TTS--EEEEEECCCT--TSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TT
T ss_pred             EEEEEEEEe-CCC--EEEEEEecCC--CCCCEEECCeeeccCCC-CHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CC
Confidence            334444444 355  8999999864  57899999999999999 999999999999999999888888876542   33


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...+.|++.+..........+.+|+.++.|++++++.+.
T Consensus        92 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  130 (156)
T 3gg6_A           92 WVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTP  130 (156)
T ss_dssp             EEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSS
T ss_pred             EEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCccc
Confidence            455566666543211111235579999999999998763

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.77  E-value=3.1e-18  Score=133.39  Aligned_cols=111  Identities=18%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEE----EeCCcc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVT----ILDPIF  129 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg----~l~~~~  129 (245)
                      .+|.+++++..+++.+|||++|+.    .+|.|+||||++|+|| ++.+||+||++||||+.+..+.+++    ......
T Consensus         4 ~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   78 (138)
T 1ktg_A            4 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGE-DEWQAAIRETKEEANITKEQLTIHEDCHETLFYEA   78 (138)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCC-CHHHHHHHHHHHHHCCCccceEEeccccceEEEEe
Confidence            445555555334455899999973    3589999999999999 9999999999999999877666553    222222


Q ss_pred             cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          130 TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ......++.|++.+...   ....+++|+.++.|++++++.+.
T Consensus        79 ~~~~~~~~~f~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~  118 (138)
T 1ktg_A           79 KGKPKSVKYWLAKLNNP---DDVQLSHEHQNWKWCELEDAIKI  118 (138)
T ss_dssp             TTEEEEEEEEEEEECSC---CCCCCCTTEEEEEEECHHHHHHH
T ss_pred             CCCceEEEEEEEEecCC---cccCCCchhcEeEeccHHHHHHh
Confidence            23345566677776542   12356789999999999998764

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.77  E-value=3.6e-18  Score=136.27  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=83.2

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCccc
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIFT  130 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~~  130 (245)
                      ..+|.+++++ .++  +|||++|+..  .++|.|+||||++|+|| ++.+||+||++||||+.+.  .+.+++.+...++
T Consensus        18 ~~~v~~vi~~-~~~--~vLl~~r~~~--~~~g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   91 (160)
T 1rya_A           18 LVSLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD   91 (160)
T ss_dssp             EEEEEEEEEC-TTS--CEEEEEECSS--SSTTSEECCEEECCTTC-CHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEES
T ss_pred             EEEEEEEEEc-CCC--EEEEEeccCC--CCCCEEECCccccCCCC-CHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEc
Confidence            4566666665 345  7999999874  57899999999999999 9999999999999999863  6677777654433


Q ss_pred             CC--------ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          131 KN--------GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       131 ~~--------~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ..        ...++.|.+.+..   ..+..+++|+.++.|++++++.+..
T Consensus        92 ~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~e~~~~~W~~~~el~~~~  139 (160)
T 1rya_A           92 DNFSGTDFTTHYVVLGFRFRVSE---EELLLPDEQHDDYRWLTSDALLASD  139 (160)
T ss_dssp             SBTTBSSSCEEEEEEEEEEECCG---GGCCCCSSSEEEEEEECHHHHHHCT
T ss_pred             ccccCCCcCcEEEEEEEEEEcCc---cccccCCCccceEEEecHHHHhhcc
Confidence            21        3344555555442   2234567899999999999998744

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.77  E-value=6.9e-18  Score=135.90  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=74.0

Q ss_pred             CCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEe-----
Q 025996           51 KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTIL-----  125 (245)
Q Consensus        51 ~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l-----  125 (245)
                      .++.+++++++.. ++  +|||++|+...+.++|.|+||||++|+|| ++++||+||++||||+.+....+++..     
T Consensus        25 ~~~~~~~~~ii~~-~~--~vLL~~r~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~  100 (165)
T 3oga_A           25 MRQRTIVCPLIQN-DG--CYLLCKMADNRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLILSDITPWTFRDDI  100 (165)
T ss_dssp             CEEEEEEEEEEEE-TT--EEEEEEECC------CCEECCCEECCTTC-CHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEE
T ss_pred             cceEEEEEEEEeC-CC--EEEEEEecCCCCCCCCeEECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeeeeeecce
Confidence            4455555555553 55  89999999876788999999999999999 999999999999999998776655421     


Q ss_pred             -CCcccCCc---eE--EEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          126 -DPIFTKNG---II--VVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       126 -~~~~~~~~---~~--v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       ...+....   ..  +..|.+....   ..... .+|+.++.|++++++.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          101 RIKTYADGRQEEIYMIYLIFDCVSAN---RDICI-NDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             EEEEC--CCEEEEEEEEEEEEEEESC---CCCCC-CTTEEEEEEECGGGGGGS
T ss_pred             eeEecCCCCceeEEEEEEEEEeeccC---CCccC-CchheeeEEccHHHHhhC
Confidence             11111111   11  2233333332   12223 379999999999999874

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.76  E-value=1.7e-18  Score=135.08  Aligned_cols=110  Identities=21%  Similarity=0.261  Sum_probs=81.7

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      ...+.++++. .+|  +|||++|+.. +.++|.|+||||+++.|| ++.+||+||++||||+.+....+++.+...++..
T Consensus         8 ~~~~~~~ii~-~~~--~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~   82 (140)
T 2rrk_A            8 MIEVVAAIIE-RDG--KILLAQRPAQ-SDQAGLWEFAGGKVEPDE-SQRQALVRELREELGIEATVGEYVASHQREVSGR   82 (140)
T ss_dssp             EEEEEEEEEE-ETT--EEEEEECCSS-CSCCCCEECCEEECCTTS-CHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTE
T ss_pred             cceEEEEEEE-cCC--EEEEEEcCCC-CCCCCEEECCceecCCCC-CHHHHHHHHHHHHHCCeeecccEEEEEEEecCCc
Confidence            3333344444 356  8999999776 468999999999999999 9999999999999999988888888775544444


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...++.|.+.....     .++.+|+.++.|++++++.+.
T Consensus        83 ~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~  117 (140)
T 2rrk_A           83 IIHLHAWHVPDFHG-----TLQAHEHQALVWCSPEEALQY  117 (140)
T ss_dssp             EEEEEEEEESEEEE-----CCCCSSCSCEEEECHHHHTTS
T ss_pred             EEEEEEEEEEeeCC-----CcCCCccceeEEeCHHHHhhC
Confidence            44455555543321     234578899999999998764

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.76  E-value=3.7e-18  Score=134.88  Aligned_cols=109  Identities=19%  Similarity=0.306  Sum_probs=84.2

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI  134 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  134 (245)
                      .|+++++. .+|  +|||++|... +.++|.|+||||++|+|| ++.+||+||+.||||+.+....+++.....++....
T Consensus        23 ~~~~~i~~-~~~--~vLl~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   97 (153)
T 3ees_A           23 PVVAGFLR-KDG--KILVGQRPEN-NSLAGQWEFPGGKIENGE-TPEEALARELNEELGIEAEVGELKLACTHSYGDVGI   97 (153)
T ss_dssp             EEEEEEEE-ETT--EEEEEECCTT-STTTTCEECSEEECCTTC-CHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEE
T ss_pred             EEEEEEEE-ECC--EEEEEEeCCC-CCCCCeEECCceeeCCCC-CHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeE
Confidence            44444454 345  8999999886 478999999999999999 999999999999999998888888876655555455


Q ss_pred             EEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          135 IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       135 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .++.|.+.+...     .++++|+.++.|++++++.+..
T Consensus        98 ~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~  131 (153)
T 3ees_A           98 LILFYEILYWKG-----EPRAKHHMMLEWIHPEELKHRN  131 (153)
T ss_dssp             EEEEEEECEEES-----CCCCSSSSEEEEECGGGGGGSC
T ss_pred             EEEEEEEEECCC-----CcCCCccceEEEecHHHhhhCC
Confidence            555555544321     2456889999999999998743

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.76  E-value=1.1e-17  Score=135.53  Aligned_cols=110  Identities=16%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCcc-CCceecCCCCCCHHHHHHHHHHHHHCCCCCc--ceEEEEeC-Cc
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVA-LPGGKREENDADDAGTALREAKEEIGLDPSL--VNVVTILD-PI  128 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~-fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~--~~~lg~l~-~~  128 (245)
                      +.+|.+++++ .+|  +|||++|+.....++|.|+ ||||++++|| ++.+||+||++||||+.+..  +..++.+. ..
T Consensus        34 ~~~v~v~i~~-~~~--~vLl~~r~~~~~~~~g~w~~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~  109 (171)
T 1q27_A           34 VRVVNAFLRN-SQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELNVEIDALSWRPLASFSPFQ  109 (171)
T ss_dssp             CEEEEEEEEE-TTT--EEEECCSCCSSSCCCCSCCCSEEEECSSSS-CHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSS
T ss_pred             ceEEEEEEEC-CCC--eEEEEEecCCCCCCCCccccccCccccCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeccC
Confidence            5566666666 456  8999999877667899998 9999999999 99999999999999999877  45666665 33


Q ss_pred             ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      ..... .++.|.+...    ..+.++++|+.++.|++++++.+
T Consensus       110 ~~~~~-~~~~f~~~~~----~~~~~~~~E~~~~~W~~~~el~~  147 (171)
T 1q27_A          110 TTLSS-FMCVYELRSD----ATPIFNPNDISGGEWLTPEHLLA  147 (171)
T ss_dssp             SCCSS-EEEEEEEECC----CCCCSCTTTCSCCEEECHHHHHH
T ss_pred             CCCcc-EEEEEEEEEC----CccccCchhhheEEEecHHHHHH
Confidence            32222 5556666552    12345678999999999999874

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.75  E-value=9.2e-18  Score=134.21  Aligned_cols=110  Identities=22%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceE--EEEeCCcccC
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNV--VTILDPIFTK  131 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~--lg~l~~~~~~  131 (245)
                      .++.+++++ .++  +|||++|... +.++|.|+||||++|+|| ++.+||+||++||||+.+....+  ++.....++.
T Consensus        30 ~~~~~~i~~-~~~--~vLL~~r~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~  104 (158)
T 3hhj_A           30 IVVACALLD-QDN--RVLLTQRPEG-KSLAGLWEFPGGKVEQGE-TPEASLIRELEEELGVHVQADNLFPLTFASHGYET  104 (158)
T ss_dssp             EEEEEEEBC-TTS--EEEEEECCCT-TSCCCCCBCCEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS
T ss_pred             EEEEEEEEe-CCC--EEEEEEeCCC-CCCCCEEECCceeecCCC-CHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC
Confidence            334444444 455  8999999876 478999999999999999 99999999999999999887643  5554444444


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ....++.|.+....     ..++.+|+.++.|++++++.+..
T Consensus       105 ~~~~~~~~~~~~~~-----~~~~~~e~~~~~W~~~~el~~~~  141 (158)
T 3hhj_A          105 FHLLMPLYFCSHYK-----GVAQGREGQNLKWIFINDLDKYP  141 (158)
T ss_dssp             CEEEEEEEEESCCB-----SCCCCTTSCEEEEEEGGGGGGSC
T ss_pred             cEEEEEEEEEEECC-----CccCCccccceEEEcHHHHhhCC
Confidence            44455555544332     13456899999999999997643

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.75  E-value=1.2e-17  Score=130.95  Aligned_cols=110  Identities=20%  Similarity=0.244  Sum_probs=80.8

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce--EEEEeCCcccC
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVN--VVTILDPIFTK  131 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~--~lg~l~~~~~~  131 (245)
                      .++++++++ .+|  +|||++|... +.++|.|+||||++|.|| ++.+||+||++||||+.+....  .++.....++.
T Consensus         9 ~~~~~vi~~-~~~--~vLl~~r~~~-~~~~g~w~lPgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   83 (144)
T 3r03_A            9 LVTAAALID-PDG--RVLLAQRPPG-KSLAGLWEFPGGKLEPGE-TPEAALVRELAEELGVDTRASCLAPLAFASHSYDT   83 (144)
T ss_dssp             EEEEEEEBC-TTS--CEEEEECCTT-SSSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS
T ss_pred             EEEEEEEEc-CCC--EEEEEEeCCC-CCCCCcEECCCcEecCCC-CHHHHHHHHHHHHhCceeeccceEEEEeeeccCCC
Confidence            334444444 345  7999999876 468999999999999999 9999999999999999988763  34444444444


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ....++.|.+.....     .++++|+.++.|++++++.+..
T Consensus        84 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~  120 (144)
T 3r03_A           84 FHLLMPLYACRSWRG-----RATAREGQTLAWVRAERLREYP  120 (144)
T ss_dssp             SEEEEEEEEECCCBS-----CCCCCSSCEEEEECGGGGGGSC
T ss_pred             eEEEEEEEEEEecCC-----ccCCCCcceEEEEeHHHhccCC
Confidence            445555555544321     2456889999999999997744

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.75  E-value=1e-18  Score=143.19  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=85.6

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      ..+|.+++++ .++  +|||++|... ..++|.|+||||++|+|| ++++||+||++||||+.+..+.+++.+....+..
T Consensus        41 ~~~v~v~i~~-~~~--~vLL~~r~~~-~~~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  115 (182)
T 2yvp_A           41 VAASFVLPVT-ERG--TALLVRQYRH-PTGKFLLEVPAGKVDEGE-TPEAAARRELREEVGAEAETLIPLPSFHPQPSFT  115 (182)
T ss_dssp             CEEEEEEEBC-TTS--EEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTB
T ss_pred             CCEEEEEEEc-CCC--EEEEEEeccC-CCCCcEEEeccccCCCCc-CHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCcc
Confidence            3466665665 355  7999998765 356789999999999999 9999999999999999998888887765444444


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...++.|++..... ......+++|+.++.|+|++++.+.
T Consensus       116 ~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~  154 (182)
T 2yvp_A          116 AVVFHPFLALKARV-VTPPTLEEGELLESLELPLTEVYAL  154 (182)
T ss_dssp             CCEEEEEEECSCEE-CSCCCCCTTCCEEEEEEEHHHHHHH
T ss_pred             ccEEEEEEEecccc-CCCCCCCCCceEEEEEEEHHHHHHH
Confidence            45666666653221 1123457789999999999999764

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.75  E-value=4.5e-18  Score=138.05  Aligned_cols=110  Identities=17%  Similarity=0.130  Sum_probs=78.0

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .+|.+++++  +|  +|||++|.... .++|.|+||||++|+|| ++++||+||++||||+ +..+..++.+........
T Consensus        35 ~~v~vii~~--~~--~vLL~~~~r~~-~~~~~w~lPgG~ve~gE-s~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~  107 (170)
T 1v8y_A           35 PAVAVIALR--EG--RMLFVRQMRPA-VGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTD  107 (170)
T ss_dssp             CEEEEEEEE--TT--EEEEEECCBTT-TTBCCBBCSEEECCTTC-CHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBC
T ss_pred             CeEEEEEEE--CC--EEEEEEEEeCC-CCCCEEECCccccCCCC-CHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccc
Confidence            456565665  45  79999886652 57899999999999999 9999999999999999 888888887654444344


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..++.|++.....  ....++++|+.++.|+|++++.+.
T Consensus       108 ~~~~~f~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  144 (170)
T 1v8y_A          108 EKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALER  144 (170)
T ss_dssp             CEEEEEEEEEEEE--CC--------CEEEEECHHHHHHH
T ss_pred             cEEEEEEEEeccc--cCCCCCCCceEEEEEEEHHHHHHH
Confidence            5566666665321  123456789999999999998764

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.74  E-value=2.1e-17  Score=132.11  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=74.4

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc----cCCceEEEEEE
Q 025996           65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF----TKNGIIVVPVI  140 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~----~~~~~~v~~~v  140 (245)
                      +++.++||++|+..    +|.|+||||++|+|| |+.+||+||++||||+.+....+++.+....    ......+..|+
T Consensus        21 n~~~e~LL~~r~~~----~~~W~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (155)
T 3u53_A           21 NNAIEFLLLQASDG----IHHWTPPKGHVEPGE-DDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWL   95 (155)
T ss_dssp             SCSEEEEEEEESSS----SCCEECSEEECCSSC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEecCC----CCCEECCeeeccCCC-CHHHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcceeEEEEEE
Confidence            56679999999864    478999999999999 9999999999999999998877776543321    11223344455


Q ss_pred             EEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          141 GILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       141 ~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      +.+... ...+. ..+|+.++.|++++++.+.
T Consensus        96 ~~~~~~-~~~~~-~~~E~~~~~W~~~~ea~~~  125 (155)
T 3u53_A           96 AEVKDY-DVEIR-LSHEHQAYRWLGLEEACQL  125 (155)
T ss_dssp             EEESCT-TCCCC-CCTTEEEEEEECHHHHHHH
T ss_pred             EEEecc-CCccC-CCcceeEEEEeEHHHHHHH
Confidence            555542 22233 3479999999999998653

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.74  E-value=4.5e-18  Score=142.24  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=86.8

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      +..||+|++++  ++  +|||++|... ..++|.|+||||++|+|| ++++||+||++||||+.+..+++++.+......
T Consensus        48 ~~~av~vl~~~--~~--~vLLvrq~r~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  121 (198)
T 1vhz_A           48 NREAVMIVPIV--DD--HLILIREYAV-GTESYELGFSKGLIDPGE-SVYEAANRELKEEVGFGANDLTFLKKLSMAPSY  121 (198)
T ss_dssp             CCCEEEEEEEE--TT--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTT
T ss_pred             CCCEEEEEEEE--CC--EEEEEEcccC-CCCCcEEEeCcccCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCc
Confidence            34566666565  23  7999987654 356789999999999999 999999999999999999888888887654444


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ....++.|++......  ....+++|+.++.|+|++++.+.-
T Consensus       122 ~~~~~~~f~a~~~~~~--~~~~~~~E~~~~~w~~~~el~~~~  161 (198)
T 1vhz_A          122 FSSKMNIVVAQDLYPE--SLEGDEPEPLPQVRWPLAHMMDLL  161 (198)
T ss_dssp             CCCEEEEEEEEEEEEC--CCCCCCSSCCCEEEEEGGGGGGGG
T ss_pred             cCcEEEEEEEEeCCcc--cCCCCCCceEEEEEEEHHHHHHHH
Confidence            4556677777654321  224577899999999999998743

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.74  E-value=7.3e-18  Score=140.61  Aligned_cols=116  Identities=22%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      .+.+|.+++++..++  +|||++|..   +++|.|+||||++|+|| ++.+||+||++||||+.+....+++........
T Consensus        25 ~~v~v~~~v~~~~~~--~vLL~~r~~---~~~g~w~lPGG~ve~gE-s~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~   98 (199)
T 3h95_A           25 HQVGVAGAVFDESTR--KILVVQDRN---KLKNMWKFPGGLSEPEE-DIGDTAVREVFEETGIKSEFRSVLSIRQQHTNP   98 (199)
T ss_dssp             -CCEEEEEEEETTTT--EEEEEEESS---SSTTSBBCCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEECC---
T ss_pred             ccceEEEEEEeCCCC--EEEEEEEcC---CCCCCEECCccccCCCC-CHHHHHHHHHHHHhCCccccceEEEEEeeecCC
Confidence            345565656664344  899999865   35799999999999999 999999999999999998877766643222211


Q ss_pred             --CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          132 --NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       132 --~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                        .......|++.+... ...+.++++|+.++.|+|++++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~  142 (199)
T 3h95_A           99 GAFGKSDMYIICRLKPY-SFTINFCQEECLRCEWMDLNDLAKTEN  142 (199)
T ss_dssp             ------CEEEEEEEEES-CCCCCCCTTTEEEEEEEEHHHHHHCSS
T ss_pred             CCceeEEEEEEEEEcCC-CcccCCCccceeeeEEEeHHHHhhhhh
Confidence              122223344444322 233456789999999999999987543

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.74  E-value=2.8e-18  Score=141.78  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=84.3

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCCcc-eEEEEeCC
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPSLV-NVVTILDP  127 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~-~~lg~l~~  127 (245)
                      +..+.+|.+++++ .+|  +|||++|+.....++|.|+| |||++|+|| ++++||+||++||||+.+..+ .+++.+..
T Consensus        29 ~~~~~~v~~~i~~-~~g--~vLl~~R~~~~~~~~g~w~~~PgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~  104 (190)
T 1hzt_A           29 TRLHLAFSSWLFN-AKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLGE-SNEDAVIRRCRYELGVEITPPESIYPDFRY  104 (190)
T ss_dssp             --CEECEEEEEEC-TTC--CEEEEEECTTCSSSTTCEEESEEECCCTTC-CHHHHHHHHHHHHHCCCBSCCEEEETTCEE
T ss_pred             CceEEEEEEEEEc-CCC--EEEEEEeCCCCCCCCCcccCcccccCCCCC-CHHHHHHHHHHHHHCCCchhhheeeeeEEE
Confidence            3445566666665 455  79999998776678999999 999999999 999999999999999998887 66665432


Q ss_pred             cc--c-C--CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          128 IF--T-K--NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       128 ~~--~-~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..  . .  ....++.|++.+..    .+.++++|+.++.|++++++.+.
T Consensus       105 ~~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~~  150 (190)
T 1hzt_A          105 RATDPSGIVENEVCPVFAARTTS----ALQINDDEVMDYQWCDLADVLHG  150 (190)
T ss_dssp             EEECTTSCEEEEECCEEEEEBCS----CCCCCTTTEEEEEEECHHHHHHH
T ss_pred             EeeCCCCCcceEEEEEEEEecCC----CCcCCccceeeEEEecHHHHHHH
Confidence            21  1 1  12233455555432    23457789999999999998763

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.74  E-value=1.8e-17  Score=134.18  Aligned_cols=113  Identities=18%  Similarity=0.249  Sum_probs=79.6

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      .+.+|.+++++  +|  +|||++|...    +|.|+||||++|+|| ++.+||+||++||||+.+....+++.+......
T Consensus        22 ~~~~v~~ii~~--~~--~vLL~~r~~~----~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   92 (171)
T 3id9_A           22 MQVRVTGILIE--DE--KVLLVKQKVA----NRDWSLPGGRVENGE-TLEEAMIREMREETGLEVKIKKLLYVCDKPDAS   92 (171)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEECSST----TCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSS
T ss_pred             eEEEEEEEEEE--CC--EEEEEEEECC----CCeEECCCccCCCCC-CHHHHHHHHHHHHHCCccccceEEEEEcccCCC
Confidence            45556555555  45  8999999863    689999999999999 999999999999999998877777776554444


Q ss_pred             CceEEEEEEEEeCCCCCC--CCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSF--IPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~--~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .......|.+........  ...++++|+.++.|+|++++.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~  136 (171)
T 3id9_A           93 PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYG  136 (171)
T ss_dssp             SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGT
T ss_pred             CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCC
Confidence            444444455544422110  112466899999999999998754

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.74  E-value=1.6e-17  Score=136.06  Aligned_cols=110  Identities=22%  Similarity=0.101  Sum_probs=79.8

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      +++++++ ++. .++  +|||++|...  .++|.|+||||++|+|| ++.+||+||++||||+.+..+.+++.+...+..
T Consensus        24 ~~~~~~~-vi~-~~~--~vLL~~r~~~--~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~   96 (176)
T 3q93_A           24 SRLYTLV-LVL-QPQ--RVLLGMKKRG--FGAGRWNGFGGKVQEGE-TIEDGARRELQEESGLTVDALHKVGQIVFEFVG   96 (176)
T ss_dssp             EEEEEEE-EEE-CSS--EEEEEEECSS--TTTTSEECEEEECCTTS-CHHHHHHHHHHHHHSCEESCCEEEEEEEEEETT
T ss_pred             CcEEEEE-EEE-eCC--EEEEEEEcCC--CCCCeEECceecCCCCC-CHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCC
Confidence            3444444 343 345  8999999654  57899999999999999 999999999999999999988988887654443


Q ss_pred             Cce--EEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGI--IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~--~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ...  .++.|.+....   .  .+.+.|..++.|++++++.+..
T Consensus        97 ~~~~~~~~~f~~~~~~---~--~~~~~e~~~~~W~~~~el~~~~  135 (176)
T 3q93_A           97 EPELMDVHVFCTDSIQ---G--TPVESDEMRPCWFQLDQIPFKD  135 (176)
T ss_dssp             CSCEEEEEEEEESCEE---S--CCCCCSSEEEEEEETTCCCGGG
T ss_pred             CCcEEEEEEEEEECCC---C--CcCCCcceeeEEeeHHHccccc
Confidence            322  33444443221   1  2345677888999999998643

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.74  E-value=6.9e-18  Score=135.23  Aligned_cols=110  Identities=21%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             CCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc--
Q 025996           51 KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI--  128 (245)
Q Consensus        51 ~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~--  128 (245)
                      .++.+|.+++++  ++  +|||++|..     +|.|+||||++|+|| ++.+||+||++|||||.+..+.+++.+...  
T Consensus         4 ~~~~~v~~vi~~--~~--~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   73 (159)
T 3f6a_A            4 NRHFTVSVFIVC--KD--KVLLHLHKK-----AKKMLPLGGHIEVNE-LPEEACIREAKEEAGLNVTLYNPIDINLKKSC   73 (159)
T ss_dssp             CSCEEEEEEEEE--TT--EEEEEECSS-----SCCEECEEEECCTTC-CHHHHHHHHHHHHHCCCCEECCCCCHHHHHHH
T ss_pred             cceEEEEEEEEE--CC--EEEEEEcCC-----CCeEECCccCccCCC-CHHHHHHHHHHHHhCCCceecccccccccccc
Confidence            345666666665  45  899999875     489999999999999 999999999999999988766655422100  


Q ss_pred             ------------------c-cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          129 ------------------F-TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       129 ------------------~-~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                                        + .........|.+.....   ...++++|+.++.|+|++++.+..
T Consensus        74 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           74 DLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSF---ETSPEIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             HHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCS---CCCCCTTSCCCEEEECSSSSTTCS
T ss_pred             cccccccccCccccccccCCCCceEEEEEEEEEeCCC---CcCCCCCcccceEEeeHHHHhhCc
Confidence                              0 11112334555655432   234567899999999999998754

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.74  E-value=9.4e-18  Score=128.67  Aligned_cols=104  Identities=15%  Similarity=0.036  Sum_probs=79.0

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI  134 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  134 (245)
                      +|.+++++ .++  +|||+||+.      |.|+||||++++|| ++.+||+||++||||+.+....+++.+....+....
T Consensus         4 ~~~~vi~~-~~~--~vLl~~r~~------g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~   73 (126)
T 1vcd_A            4 GAGGVVFN-AKR--EVLLLRDRM------GFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVE   73 (126)
T ss_dssp             EEEEEEEC-TTS--CEEEEECTT------SCEECCEECCCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCE
T ss_pred             EEEEEEEc-CCC--EEEEEEECC------CCccCCcCcCCCCC-CHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceE
Confidence            45555565 355  799999874      78999999999999 999999999999999998888888877544444445


Q ss_pred             EEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          135 IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       135 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .++.|.+..... .   ..+.+|+.++.|+|++++.+.
T Consensus        74 ~~~~~~~~~~~~-~---~~~~~e~~~~~w~~~~el~~~  107 (126)
T 1vcd_A           74 REVHWFLMRGEG-A---PRLEEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             EEEEEEEEEEES-C---CCCCTTCCEEEEECHHHHHHH
T ss_pred             EEEEEEEEEcCC-C---CCCCcceeeeEEcCHHHHHHh
Confidence            566666654432 1   234578999999999998763

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.74  E-value=4.2e-18  Score=140.51  Aligned_cols=104  Identities=25%  Similarity=0.271  Sum_probs=77.4

Q ss_pred             cEEEEEEEeCC-----CCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-C-ceEEEEE
Q 025996           67 DLRVFLTKRSS-----NLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-N-GIIVVPV  139 (245)
Q Consensus        67 ~~~vLL~rR~~-----~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-~-~~~v~~~  139 (245)
                      +.+|||++|+.     ....++|.|+||||++|+|| ++++||+||++|||||.+..+.+++.+...... . ......|
T Consensus        45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~  123 (187)
T 3i9x_A           45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENE-SAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAF  123 (187)
T ss_dssp             EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEE
T ss_pred             CCEEEEEEEccccccccCCCCCCEEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCCCCEEEEEE
Confidence            45899999975     33478899999999999999 999999999999999999999999887654322 2 2333445


Q ss_pred             EEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          140 IGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       140 v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ++.+... ......+.+|+.++.|++++++.+.
T Consensus       124 ~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~  155 (187)
T 3i9x_A          124 YAIVPPE-ALEKRAAGDDAAEIGLFPMTEALEL  155 (187)
T ss_dssp             EEECCHH-HHHHHHHSTTTTTEEEEEHHHHTTS
T ss_pred             EEEEcCc-ccCCcCCCCceeEEEEEeHHHcccC
Confidence            5544321 1111234578999999999998753

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.73  E-value=7.5e-18  Score=133.44  Aligned_cols=111  Identities=12%  Similarity=0.051  Sum_probs=80.4

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-  131 (245)
                      +.+|.+++..  ++  +|||++|.... . +|.|+||||++|+|| ++.+||+||++||||+.+....+++.+...... 
T Consensus         8 ~~~v~~ii~~--~~--~vLl~~r~~~~-~-~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (153)
T 2b0v_A            8 NVTVAAVIEQ--DD--KYLLVEEIPRG-T-AIKLNQPAGHLEPGE-SIIQACSREVLEETGHSFLPEVLTGIYHWTCASN   80 (153)
T ss_dssp             EEEEEEECEE--TT--EEEEEEECSSS-S-CCEEECSEEECCTTS-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred             CEEEEEEEee--CC--EEEEEEEcCCC-C-CCeEECCCcCcCCCC-CHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCC
Confidence            4455554443  45  89999998753 3 889999999999999 999999999999999998888888776433322 


Q ss_pred             -CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          132 -NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       ..+.++.|.+......  ....+.+|+.++.|++++++.+.
T Consensus        81 ~~~~~~~~f~~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           81 GTTYLRFTFSGQVVSFD--PDRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             TEEEEEEEEEEEEEEEC--TTSCCCTTEEEEEEEEHHHHHHT
T ss_pred             CcEEEEEEEEEEeCCCC--CCCCCCCCeeeEEEecHHHHhhh
Confidence             1233445555544321  11345689999999999999873

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.73  E-value=4.9e-17  Score=128.61  Aligned_cols=111  Identities=18%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce-EE---EEeCCc-
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVN-VV---TILDPI-  128 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~-~l---g~l~~~-  128 (245)
                      .+|.++++...+++.+|||++|...     |.|+||||++|+|| ++.+||+||++||||+.+.... .+   .....+ 
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~~-----g~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   79 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTDA-----DVWQFVAGGGEDEE-AISETAKRESIEELNLDVDVKMYSLDSHASIPNFH   79 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESSS-----SCEECEEEECCTTC-CHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGG
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcCC-----CCEeCCccccCCCC-CHHHHHHHHHHHHhCCCcccceEEEEeeeccccee
Confidence            3444444432344458999999863     89999999999999 9999999999999999887541 11   112111 


Q ss_pred             c--c-CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          129 F--T-KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~--~-~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      +  . ......+.|.+.+... ...+.+ ++|+.++.|++++++.+.
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~-~~~~~~-~~E~~~~~W~~~~el~~~  124 (149)
T 3son_A           80 FSFNKPYVVPEYCFAIDLTSC-SYQVTL-SLEHSELRWVSYESAIQL  124 (149)
T ss_dssp             TCSSSCSEEEEEEEEEECTTT-GGGCCC-CTTEEEEEEECHHHHHHH
T ss_pred             eccCCceEeEEEEEEEEcCCC-CCcccC-CCceeeEEEeCHHHHHHH
Confidence            1  1 1234455566665531 122334 489999999999998864

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.73  E-value=1.8e-17  Score=147.07  Aligned_cols=159  Identities=18%  Similarity=0.230  Sum_probs=111.3

Q ss_pred             CCchhHHHHHHHHhhcCCCCCCCccccccc--cc----cCcc----ccccCCCCCceEEEEEEEEcCCCcEEEEEEEeCC
Q 025996            8 DRSERLETLVQRLRLYNERHQNPVTEREAV--DS----QDSY----SVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRSS   77 (245)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~----~~~~~~~~r~aaV~v~l~~~~~g~~~vLL~rR~~   77 (245)
                      .++..+..++++++.-.-   -.-+++|.+  ..    ....    ++.+..+..+.+|.+.+++..+++.++|++||+.
T Consensus        66 ~rt~~~~~~~~~~~~~g~---~~gwr~E~~~V~~~~~~~~~~~~eR~~~~~~G~~~~~vh~~~~~~~~~~~~lll~rRs~  142 (300)
T 3dup_A           66 SRTRAVADVVDRLADEGV---VPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSP  142 (300)
T ss_dssp             HHHHHHHHHHHHHHHTTS---SCCCCSCEEEECSSTTSCCCEEEEGGGTGGGTCCEEEEEEEEEESCGGGCEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHcCC---CCccccccEEeecCCCCeeeEEEEhhhccccceEEEEEEEEEEEecCCeeEEEEEeCCC
Confidence            345666777777776321   112334443  11    1112    4446678899999998888655567999999999


Q ss_pred             CCCCCCCCc-cCCceecCCCCCCHHHHHHHHHHHHHCCCCCc---ceEEEEeCCccc-CCc---eEEEEEEEEeCCCCCC
Q 025996           78 NLSSHSGEV-ALPGGKREENDADDAGTALREAKEEIGLDPSL---VNVVTILDPIFT-KNG---IIVVPVIGILPDRNSF  149 (245)
Q Consensus        78 ~~~~~~G~w-~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~---~~~lg~l~~~~~-~~~---~~v~~~v~~~~~~~~~  149 (245)
                      .|..|||+| .++||++++|| ++.+||+||++||+||+...   +..++.+...+. ..+   ..++.|.+.+..  +.
T Consensus       143 ~K~~~PG~wd~svaG~i~~GE-s~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~~l~~--~~  219 (300)
T 3dup_A          143 DKSVAPGKLDNMVAGGQPADL-SLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPE--DF  219 (300)
T ss_dssp             TCSSSTTCEEESEEEECCTTS-CHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEEECCT--TC
T ss_pred             cccCCCCccccccccCCCCCC-CHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEEEecC--CC
Confidence            999999999 69999999999 99999999999999998643   344555443321 122   233344444443  44


Q ss_pred             CCCCCcccceeEEEEcccccccc
Q 025996          150 IPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       150 ~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .+.++++||+++.|+|++++.+.
T Consensus       220 ~p~~~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          220 RPHNTDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             CCCCTTSSEEEEEEEEHHHHHHH
T ss_pred             cCCCCchHhheEEEECHHHHHHH
Confidence            55789999999999999999874

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.73  E-value=1.2e-17  Score=138.64  Aligned_cols=115  Identities=16%  Similarity=0.103  Sum_probs=83.1

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCC----CC-CCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNL----SS-HSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDP  127 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~----~~-~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~  127 (245)
                      ..+|++++++..++  ++||+++....    +. +++.|+||||++| || ++++||+||++||||+.+..+..++.+..
T Consensus        45 ~~av~v~~~~~~~~--~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE-~~~~aa~REl~EEtG~~~~~~~~l~~~~~  120 (191)
T 3o6z_A           45 GNGATILLYNTKKK--TVVLIRQFRVATWVNGNESGQLIESCAGLLD-ND-EPEVCIRKEAIEETGYEVGEVRKLFELYM  120 (191)
T ss_dssp             CCEEEEEEEETTTT--EEEEEEEECHHHHTTTCTTCEEEECEEEECC-SS-CHHHHHHHHHHHHC-CCCSCEEEEEEEES
T ss_pred             CCEEEEEEEECCCC--EEEEEEcCCccccccCCCCCeEEEecceEeC-CC-CHHHHHHHHHHHHhCCccCcEEEEEEEEe
Confidence            44555556653345  78888775421    11 6789999999999 99 99999999999999999999999988766


Q ss_pred             cccCCceEEEEEEEEeCCCCCCC--CCCCcccceeEEEEcccccccc
Q 025996          128 IFTKNGIIVVPVIGILPDRNSFI--PAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       128 ~~~~~~~~v~~~v~~~~~~~~~~--~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ........++.|++.........  ..+ ++|+.++.|+|++++.+.
T Consensus       121 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~  166 (191)
T 3o6z_A          121 SPGGVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEM  166 (191)
T ss_dssp             CTTTBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHH
T ss_pred             CCCccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHH
Confidence            55555667888888765421111  122 689999999999998764

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.73  E-value=3.8e-18  Score=131.06  Aligned_cols=101  Identities=21%  Similarity=0.295  Sum_probs=79.3

Q ss_pred             CCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEe
Q 025996           64 NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        64 ~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      .++  +|||++|+.. +.++|.|+||||++++|| ++.+||+||++||||+.+.....++.+...++.....++.|.+..
T Consensus        14 ~~~--~vLl~~r~~~-~~~~g~w~~PgG~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (129)
T 1mut_A           14 ENN--EIFITRRAAD-AHMANKLEFPGGKIEMGE-TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVER   89 (129)
T ss_dssp             TTT--EEEEEECSSC-CSSSCCEECCCCCSSSCS-STTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEEEE
T ss_pred             cCC--EEEEEEeCCC-CCCCCeEECCccCcCCCC-CHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEEEc
Confidence            355  8999999876 478999999999999999 999999999999999998877777766655554444555666665


Q ss_pred             CCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          144 PDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ...     .++.+|+.++.|++++++.+..
T Consensus        90 ~~~-----~~~~~e~~~~~W~~~~el~~~~  114 (129)
T 1mut_A           90 WEG-----EPWGKEGQPGEWMSLVGLNADD  114 (129)
T ss_dssp             CSS-----CCCCCSSCCCEEEESSSCCTTT
T ss_pred             cCC-----ccCCcccceeEEeCHHHccccc
Confidence            432     2345788999999999987643

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.72  E-value=1.6e-17  Score=140.08  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=81.0

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      .+++++++..+.++..+|||+++.+. ...++.|+||||++|+|| ++++||+||++||||+.+..+.+++.+.......
T Consensus        62 ~av~v~~v~~~~~~~~~vlLv~q~R~-~~~~~~welPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~  139 (212)
T 2dsc_A           62 DGVAVIPVLQRTLHYECIVLVKQFRP-PMGGYCIEFPAGLIDDGE-TPEAAALRELEEETGYKGDIAECSPAVCMDPGLS  139 (212)
T ss_dssp             SEEEEEEEEECTTSCCEEEEEEEEEG-GGTEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTB
T ss_pred             CEEEEEEEEeCCCCCcEEEEEEeecC-CCCCcEEECCccccCCCC-CHHHHHHHHHHHHhCCCccceEEeccEEcCCCcc
Confidence            34444555543222347888775432 134678999999999999 9999999999999999987776665543322333


Q ss_pred             ceEEEEEEEEeCCCCC----CCCCCCcccceeEEEEcccccccc
Q 025996          133 GIIVVPVIGILPDRNS----FIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~----~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...++.|++.+.....    ....++++|+.++.|+|++++.+.
T Consensus       140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  183 (212)
T 2dsc_A          140 NCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQR  183 (212)
T ss_dssp             CCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred             CceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            4456677776543211    123467889999999999999764

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.71  E-value=3.1e-17  Score=130.41  Aligned_cols=112  Identities=18%  Similarity=0.120  Sum_probs=77.4

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc-C
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT-K  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~-~  131 (245)
                      +.+|.+++.+...+++.||+++|...  .++| |+||||++|+|| ++.+||+||++||||+.+....+++......+ .
T Consensus         8 ~~~~~~ii~~~~~~~~~vLl~~r~~~--~~~g-w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   83 (155)
T 2b06_A            8 ILTNICLIEDLETQRVVMQYRAPENN--RWSG-YAFPGGHVENDE-AFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG   83 (155)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEC-------CCE-EECCCCBCCTTS-CHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred             EEEEEEEEEECCCCeEEEEEEECCCC--CCCC-EeccceecCCCC-CHHHHHHHHHHHHhCccccCCcEEEEEeeccCCC
Confidence            45555555653334456999999876  3788 999999999999 99999999999999999888888877654432 2


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ....++.|.+....   .  .+++.|+.++.|++++++.+..
T Consensus        84 ~~~~~~~~~~~~~~---~--~~~~~e~~~~~W~~~~el~~~~  120 (155)
T 2b06_A           84 GRYIVICYKATEFS---G--TLQSSEEGEVSWVQKDQIPNLN  120 (155)
T ss_dssp             CEEEEEEEEECEEE---E--CCCCBTTBEEEEEEGGGGGGSC
T ss_pred             ceEEEEEEEEEecC---C--CCCCCcceeeEEeeHHHhhhCC
Confidence            23344444443322   1  2345789999999999998743

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.71  E-value=4.4e-17  Score=139.09  Aligned_cols=157  Identities=15%  Similarity=0.122  Sum_probs=103.8

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc-C
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT-K  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~-~  131 (245)
                      ..+|.++++...+++.+|||++|...  +++|.|+||||++|+|| |+++||+||++||||+.+..++.++.+..... .
T Consensus        13 ~v~v~~vi~~~~~~~~~vLLv~r~~~--~~~g~w~lPGG~ve~gE-s~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r~~   89 (226)
T 2fb1_A           13 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDE-SVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDP   89 (226)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTS-CHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSS
T ss_pred             eEEEEEEEEEEeCCCCEEEEEECcCC--CCCCCEECCeeccCCCC-CHHHHHHHHHHHHHCCCCCceEEEEEeCCCCcCC
Confidence            45555555532244569999999874  67899999999999999 99999999999999999998888888864332 2


Q ss_pred             Cc-eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCCCcee------EEEEeCeEE-EEEEEEeecCCCceEE
Q 025996          132 NG-IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAE------EREWMGYKY-LLHFFDYEAEGNKYVI  203 (245)
Q Consensus       132 ~~-~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~i  203 (245)
                      .+ .....|++.+...   ....+.+|+.++.|+|++++.+.......      ........+ .+.++.++        
T Consensus        90 ~~~~v~~~y~a~~~~~---~~~~~~~e~~~~~W~~~~el~~l~~dh~~il~~a~~rlr~~~~y~~i~~~llp--------  158 (226)
T 2fb1_A           90 GERVVSIAYYALININ---EYDRELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQKASVEPIGFNLLP--------  158 (226)
T ss_dssp             SSCEEEEEEEEECCTT---SSCHHHHHHTTEEEEETTSCCCBSTTHHHHHHHHHHHHHHHHHHSGGGGGGSC--------
T ss_pred             CceEEEEEEEEEecCc---ccccCCccccceEEEEHHHhhhccCCHHHHHHHHHHHHHhhcccCchHHHhCC--------
Confidence            22 3333566665432   12234578999999999998764321100      000000000 01111111        


Q ss_pred             echhHHHHHHHHHHHhCCCC
Q 025996          204 WALTAGILINVASVVHQCPP  223 (245)
Q Consensus       204 WG~Ta~il~~~~~~~~~~~p  223 (245)
                      --+|...|.++.+.++|++.
T Consensus       159 ~~ftl~~l~~~ye~~~~~~~  178 (226)
T 2fb1_A          159 KLFTLSQLQSLYEAIYGEPM  178 (226)
T ss_dssp             SEEEHHHHHHHHHHHHTSCC
T ss_pred             ccccHHHHHHHHHHHhCCCC
Confidence            14689999999999999876

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.71  E-value=2.9e-17  Score=138.41  Aligned_cols=117  Identities=17%  Similarity=0.038  Sum_probs=81.0

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCC--C--CCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNL--S--SHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI  128 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~--~--~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~  128 (245)
                      ..+|++++++..++  +|||+++.+..  .  ..++.|+||||++|+|| ++++||+||++||||+.+..+..++.+...
T Consensus        57 ~~av~vl~~~~~~~--~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE-~~~~aA~REl~EEtGl~~~~~~~l~~~~~~  133 (209)
T 1g0s_A           57 GHAAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPVLSFLAS  133 (209)
T ss_dssp             CCEEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEECEEEECCTTC-CHHHHHHHHHHHHHCCCCCCEEEEEEEESC
T ss_pred             CCEEEEEEEECCCC--EEEEEEeecccCCCCCCCCeEEEeCcccCCCCc-CHHHHHHHHHHHHcCcccCcEEEeEEEecC
Confidence            34666666663345  78886643321  1  12578999999999999 999999999999999999989988887544


Q ss_pred             ccCCceEEEEEEEEeCCCC-CC-CCCCCcccceeEEEEcccccccc
Q 025996          129 FTKNGIIVVPVIGILPDRN-SF-IPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~-~~-~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .......++.|++.+.... .. ....+++|+.++.|+|++++.+.
T Consensus       134 ~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~  179 (209)
T 1g0s_A          134 PGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  179 (209)
T ss_dssp             TTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred             CCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence            4444456777888753211 11 12356788999999999998763

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=141.33  Aligned_cols=118  Identities=20%  Similarity=0.079  Sum_probs=81.3

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCC------------------------------CCCCCCccCCceecCC-CCCCH
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNL------------------------------SSHSGEVALPGGKREE-NDADD  100 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~------------------------------~~~~G~w~fPGG~ve~-gE~s~  100 (245)
                      ++.+|+|++++..++  +|||+|+.+..                              ...++.|+||||++|+ || ++
T Consensus        35 ~~~aV~vl~~~~~~~--~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gE-s~  111 (218)
T 3q91_A           35 THDSVTVLLFNSSRR--SLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGL-SL  111 (218)
T ss_dssp             CCCEEEEEEEEGGGT--EEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSC-CH
T ss_pred             cCCeEEEEEEECCCC--EEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCC-CH
Confidence            356777777764344  78887653311                              1126799999999999 99 99


Q ss_pred             HHHHHHHHHHHHCCCC--CcceEEEEeCCcccCCceEEEEEEEEeCCCC---CCCCCCCcccceeEEEEcccccccc
Q 025996          101 AGTALREAKEEIGLDP--SLVNVVTILDPIFTKNGIIVVPVIGILPDRN---SFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       101 ~~aA~REl~EEtGl~~--~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~---~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ++||+||++||||+.+  ..+..++.+.......+..++.|++.+....   .....++++|+.++.|+|++++.+.
T Consensus       112 ~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~  188 (218)
T 3q91_A          112 EEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAF  188 (218)
T ss_dssp             HHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHH
T ss_pred             HHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence            9999999999999998  7888888765544455667888888875321   1123567889999999999998764

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.70  E-value=1.6e-16  Score=124.17  Aligned_cols=106  Identities=23%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             ceEEEEEEEE-cCCCcEE--EEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           53 RAAVLVCLFE-GNDGDLR--VFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        53 ~aaV~v~l~~-~~~g~~~--vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      ..+|.+++++ +.+|  +  |||++|...    ++.|+||||++|+|| ++.+||+||++||||+.+....+++.+....
T Consensus         9 ~~~v~~vi~~~~~~~--~~~vLl~~r~~~----~~~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (139)
T 2yyh_A            9 LLATDVIIRLWDGEN--FKGIVLIERKYP----PVGLALPGGFVEVGE-RVEEAAAREMREETGLEVRLHKLMGVYSDPE   81 (139)
T ss_dssp             EEEEEEEEEEEETTE--EEEEEEEEECSS----SCSEECCEEECCTTC-CHHHHHHHHHHHHHCCCCEEEEEEEEECCTT
T ss_pred             eEEEEEEEEEEcCCC--cEEEEEEEecCC----CCcEECccccCCCCC-CHHHHHHHHHHHHHCCCcccceEEEEECCCC
Confidence            3444444443 1234  5  999999754    345999999999999 9999999999999999998888888776532


Q ss_pred             cC--CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996          130 TK--NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL  170 (245)
Q Consensus       130 ~~--~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~  170 (245)
                      ..  ....++.|.+....  .  +. .++|+.++.|++++++.
T Consensus        82 ~~~~~~~~~~~f~~~~~~--~--~~-~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A           82 RDPRAHVVSVVWIGDAQG--E--PK-AGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             SCTTSCEEEEEEEEEEES--C--CC-CCTTEEEEEEECTTSCC
T ss_pred             cCCCceEEEEEEEEecCC--c--cC-CCCCcceEEEEEHHHCC
Confidence            21  23455566666632  1  22 45799999999999988

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.70  E-value=3.6e-17  Score=130.71  Aligned_cols=111  Identities=21%  Similarity=0.248  Sum_probs=76.0

Q ss_pred             CCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCC---
Q 025996           51 KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDP---  127 (245)
Q Consensus        51 ~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~---  127 (245)
                      ..+.+|.+++++ .++  +|||++|..    ++|.|+||||++|+|| ++++||+||++|||||.+..+  +.....   
T Consensus        12 ~~~~~v~~~i~~-~~~--~vLl~~r~~----~~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~   81 (165)
T 1f3y_A           12 GYRRNVGICLMN-NDK--KIFAASRLD----IPDAWQMPQGGIDEGE-DPRNAAIRELREETGVTSAEV--IAEVPYWLT   81 (165)
T ss_dssp             SCCCEEEEEEEC-TTS--CEEEEEETT----EEEEEECCEEECCTTC-CHHHHHHHHHHHHHCCCSEEE--EEECSSCCB
T ss_pred             ceeeeEEEEEEC-CCC--cEEEEecCC----CCCcEECCeeccCCCC-CHHHHHHHHHHHhhCCChhhh--hccccccee
Confidence            334555555665 355  799999974    3589999999999999 999999999999999987533  222211   


Q ss_pred             -cccC--------------CceEEEEEEEEeCCCCCCCCCC-----CcccceeEEEEcccccccc
Q 025996          128 -IFTK--------------NGIIVVPVIGILPDRNSFIPAP-----NTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       128 -~~~~--------------~~~~v~~~v~~~~~~~~~~~~~-----~~~Ev~~v~wvpl~el~~~  172 (245)
                       .+..              .+..++.|++.+... ...+.+     +++|+.++.|++++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  145 (165)
T 1f3y_A           82 YDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQ-DQEINLLGDGSEKPEFGEWSWVTPEQLIDL  145 (165)
T ss_dssp             CCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSC-GGGCCCCCCSSSCCSEEEEEEECHHHHHHH
T ss_pred             eecCccccccccccccccccCceEEEEEEEecCC-cccccccCCCCCCChhheeEEecHHHHHHH
Confidence             1110              112455677766542 112222     3679999999999999874

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.70  E-value=1.3e-17  Score=140.07  Aligned_cols=114  Identities=18%  Similarity=0.115  Sum_probs=76.9

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecC-CCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKRE-ENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve-~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      .+|.+++++ .++  +|||++|.... .++|.|+||||++| +|| ++++||+||++||||+.+..+.+++.+.......
T Consensus        44 ~av~v~i~~-~~~--~vLLvrr~r~~-~~~~~w~lPgG~ve~~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  118 (207)
T 1mk1_A           44 GAVAIVAMD-DNG--NIPMVYQYRHT-YGRRLWELPAGLLDVAGE-PPHLTAARELREEVGLQASTWQVLVDLDTAPGFS  118 (207)
T ss_dssp             CEEEEEECC-TTS--EEEEEEEEETT-TTEEEEECCEEECCSTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTB
T ss_pred             CEEEEEEEc-CCC--EEEEEEeecCC-CCCcEEEeCCccccCCCC-CHHHHHHHHHHHHHCCcccccEEEEEEEcCCCcc
Confidence            456665665 455  89999887652 56789999999999 999 9999999999999999998888887763333222


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...++.|++............+++|+.++.|++++++.+.
T Consensus       119 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~  158 (207)
T 1mk1_A          119 DESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR  158 (207)
T ss_dssp             CCCEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred             ccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            3345666665432211111246789999999999999764

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.69  E-value=6.2e-17  Score=127.24  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc-cc-
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI-FT-  130 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~-~~-  130 (245)
                      +.+|.+++++..++  +|||++|.      +|.|+||||++|+|| ++.+||+||++||||+.+....+++.+..+ +. 
T Consensus        18 ~~~~~~vi~~~~~~--~vLl~~r~------~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   88 (148)
T 2azw_A           18 RYAAYIIVSKPENN--TMVLVQAP------NGAYFLPGGEIEGTE-TKEEAIHREVLEELGISVEIGCYLGEADEYFYSN   88 (148)
T ss_dssp             CCEEEEECEEGGGT--EEEEEECT------TSCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEET
T ss_pred             eeEEEEEEECCCCC--eEEEEEcC------CCCEeCCCcccCCCC-CHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCC
Confidence            34455555653245  89999974      279999999999999 999999999999999998887777765322 11 


Q ss_pred             C----CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 K----NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 ~----~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .    ....++.|.+.....   . ....+|+.++.|++++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~e~~~~~W~~~~el~~~  130 (148)
T 2azw_A           89 HRQTAYYNPGYFYVANTWRQ---L-SEPLERTNTLHWVAPEEAVRL  130 (148)
T ss_dssp             TTTEEEEEEEEEEEEEEEEE---C-SSCC-CCSEEEEECHHHHHHH
T ss_pred             CCCcceEEEEEEEEEEcCcC---C-cCCCCceeeEEEeeHHHHHhh
Confidence            1    112344455544321   1 123478899999999998764

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.69  E-value=1.2e-16  Score=125.48  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=77.2

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc--eEEEEeCC---
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV--NVVTILDP---  127 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~--~~lg~l~~---  127 (245)
                      ..+|.+++++..+|  +|||++|+..    +|.|+||||++|+|| ++.+||+||++||||+.+...  .+++....   
T Consensus         9 ~~~v~~~i~~~~~~--~vLl~~r~~~----~g~w~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   81 (150)
T 2o1c_A            9 PVSILVVIYAQDTK--RVLMLQRRDD----PDFWQSVTGSVEEGE-TAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEF   81 (150)
T ss_dssp             SEEEEEEEEETTTC--EEEEEECSSS----TTCEESEEEECCTTC-CHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEE
T ss_pred             ceEEEEEEEeCCCC--EEEEEEecCC----CCceECCccccCCCC-CHHHHHHHHHHHHhCCCccccceeEEeeeceeee
Confidence            35666666663235  8999998764    689999999999999 999999999999999987653  34443211   


Q ss_pred             --------ccc--CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          128 --------IFT--KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       128 --------~~~--~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                              .+.  .....++.|.+.+....    ....+|+.++.|++++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~E~~~~~W~~~~el~~~  132 (150)
T 2o1c_A           82 EIFSHLRHRYAPGVTRNTESWFCLALPHER----QIVFTEHLAYKWLDAPAAAAL  132 (150)
T ss_dssp             ECCGGGGGGBCTTCCEEEEEEEEEEESSCC----CCCCSSSSCEEEEEHHHHHHH
T ss_pred             eeecccccccCCCCcceEEEEEEEEcCCCC----CcChhHhhccEeecHHHHHhh
Confidence                    011  12345566666665421    123489999999999998764

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.69  E-value=1.5e-16  Score=126.80  Aligned_cols=96  Identities=16%  Similarity=0.113  Sum_probs=76.9

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHH-HHHHHHHHHHHC-CCCCcceEEEEeCCcccCCceEEEEEEEEeCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDA-GTALREAKEEIG-LDPSLVNVVTILDPIFTKNGIIVVPVIGILPDR  146 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~-~aA~REl~EEtG-l~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~  146 (245)
                      +|||+||... +.++|.|+||||++|.|| ++. +||+||++|||| +.+.....++.+.+.++.....++.|.+.+...
T Consensus        35 ~vLl~~R~~~-~~~~g~w~~PgG~~e~gE-~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  112 (155)
T 1x51_A           35 QILLVQRPNS-GLLAGLWEFPSVTWEPSE-QLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ  112 (155)
T ss_dssp             EEEEEECCCC-STTCSCEECCEEECCSSH-HHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC
T ss_pred             EEEEEECCCC-CCCCceecCCccccCCCC-CHHHHHHHHHHHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCC
Confidence            8999999875 578999999999999999 886 999999999999 888777777777666665556666776665432


Q ss_pred             CCCCCCCCcccceeEEEEccccccc
Q 025996          147 NSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       147 ~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                           .+...|..++.|++++++.+
T Consensus       113 -----~~~~~e~~~~~W~~~~el~~  132 (155)
T 1x51_A          113 -----TPVTTVPPGARWLTQEEFHT  132 (155)
T ss_dssp             -----CCCCCCCTTEEEEEHHHHHH
T ss_pred             -----CCCCCCCCccEEccHHHhhh
Confidence                 12345778899999999875

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.69  E-value=9.4e-17  Score=134.82  Aligned_cols=105  Identities=25%  Similarity=0.296  Sum_probs=77.7

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc---
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF---  129 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~---  129 (245)
                      +.+|.+++++  +|  +|||++|.      +|.|+||||++|+|| ++.+||+||++||||+.+....+++.+....   
T Consensus        70 ~~~v~~vv~~--~~--~vLLvrr~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  138 (206)
T 3o8s_A           70 KLDTRAAIFQ--ED--KILLVQEN------DGLWSLPGGWCDVDQ-SVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNP  138 (206)
T ss_dssp             EEEEEEEEEE--TT--EEEEEECT------TSCEECSEEECCTTS-CHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC
T ss_pred             CccEEEEEEE--CC--EEEEEEec------CCeEECCeeccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEeccccCC
Confidence            4556555665  35  89999988      489999999999999 9999999999999999998888888775321   


Q ss_pred             c--CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          130 T--KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~--~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .  ........|.+.+...   .+.++ +|+.++.|++++++.+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~---~~~~~-~E~~~~~w~~~~el~~l  179 (206)
T 3o8s_A          139 AKSAHRVTKVFILCRLLGG---EFQPN-SETVASGFFSLDDLPPL  179 (206)
T ss_dssp             -----CEEEEEEEEEEEEE---CCCCC-SSCSEEEEECTTSCCCB
T ss_pred             CCCCceEEEEEEEEEecCC---eecCC-CCceEEEEEeHHHhhhc
Confidence            1  1233444555554432   23344 89999999999998764

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.68  E-value=4.4e-17  Score=140.34  Aligned_cols=156  Identities=23%  Similarity=0.229  Sum_probs=102.9

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCC--CCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc-
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREE--NDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT-  130 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~--gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~-  130 (245)
                      .+|.++++...+++.+|||++|...  +++|.|+||||++|+  || |+.+||+||++||||+.+..++.++.+..... 
T Consensus        23 v~v~~vi~~~~~~~~~vLLv~R~~~--~~~g~W~lPGG~ve~~~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~   99 (240)
T 3gz5_A           23 LTVDAVLFTYHDQQLKVLLVQRSNH--PFLGLWGLPGGFIDETCDE-SLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRD   99 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECCSS--SSTTCEECSEEECCTTTCS-BHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSS
T ss_pred             cEEEEEEEEEeCCCcEEEEEECcCC--CCCCCEECCccccCCCCCc-CHHHHHHHHHHHHHCCCCCceeeEEEeCCCccC
Confidence            4554444432345679999999864  678999999999999  99 99999999999999999998888888765432 


Q ss_pred             C-CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCCCcee------EEE-EeC-eEE-EEEEEEeecCCCc
Q 025996          131 K-NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAE------ERE-WMG-YKY-LLHFFDYEAEGNK  200 (245)
Q Consensus       131 ~-~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~------~~~-~~~-~~~-~~~~~~~~~~~~~  200 (245)
                      . .......|++.+...   ....+.+|+.++.|+|++++.+......+      ... ..+ ..+ .+.+..++.    
T Consensus       100 ~~~~~~~~~y~a~~~~~---~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr~kl~y~~i~~~llp~----  172 (240)
T 3gz5_A          100 ARGWSVTVCYTALMSYQ---ACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQKALYSLVPGFALSE----  172 (240)
T ss_dssp             TTSCEEEEEEEEECCHH---HHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHHHHHHHCSGGGGGSCS----
T ss_pred             CCceEEEEEEEEEeccc---ccCCCCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHHHhcccCcHHHHhCCC----
Confidence            2 233444566655431   12224678999999999999643221100      000 000 000 011111111    


Q ss_pred             eEEechhHHHHHHHHHHHhCCCC
Q 025996          201 YVIWALTAGILINVASVVHQCPP  223 (245)
Q Consensus       201 ~~iWG~Ta~il~~~~~~~~~~~p  223 (245)
                          -+|...|..+.+.++|++.
T Consensus       173 ----~Ftl~~l~~~ye~i~g~~~  191 (240)
T 3gz5_A          173 ----PFTLPELQHVHEVLLGKPI  191 (240)
T ss_dssp             ----SBCHHHHHHHHHHHHTSCC
T ss_pred             ----CccHHHHHHHHHHHcCCcC
Confidence                3799999999999999875

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.67  E-value=9.8e-16  Score=123.98  Aligned_cols=111  Identities=17%  Similarity=0.127  Sum_probs=81.3

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF--  129 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~--  129 (245)
                      .+.+|.+++++ .++  +|||++|..     +|.|+||||++|+|| ++.+||+||++||||+.+..+.+++.....+  
T Consensus         7 ~~~~v~~~i~~-~~~--~vLl~~r~~-----~~~w~~p~G~~e~gE-~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~   77 (164)
T 2kdv_A            7 YRPNVGIVICN-RQG--QVMWARRFG-----QHSWQFPQGGINPGE-SAEQAMYRELFEEVGLSRKDVRILASTRNWLRY   77 (164)
T ss_dssp             EEEEEEEEEEC-TTS--EEEEEEETT-----CCCEECCEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEE
T ss_pred             CCcEEEEEEEc-cCC--EEEEEEEcC-----CCeEECCeeecCCCC-CHHHHHHHHHHHHHCCCccceEEEEEecceeEE
Confidence            35566666675 355  899999874     489999999999999 9999999999999999998888888865321  


Q ss_pred             --c-----------CCceEEEEEEEEeCCCCCCCCCCC---cccceeEEEEcccccccc
Q 025996          130 --T-----------KNGIIVVPVIGILPDRNSFIPAPN---TAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 --~-----------~~~~~v~~~v~~~~~~~~~~~~~~---~~Ev~~v~wvpl~el~~~  172 (245)
                        .           ..+..++.|++.+.... ....++   .+|+.++.|++++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           78 KLPKRLVRWDTKPVCIGQKQKWFLLQLVSGD-AEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             ECCTTTCCTTSSSCCCEEEEEEEEEEESSCG-GGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             ecCcceeeeccCcccccceeEEEEEEecCCc-cccccCCCCCchhceEEEecHHHhhhh
Confidence              0           01234566777665421 122232   359999999999988753

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.67  E-value=2.7e-16  Score=135.10  Aligned_cols=114  Identities=18%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCC------CCC---HHHHHHHHHHHHHCCCCC--
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREEN------DAD---DAGTALREAKEEIGLDPS--  117 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~g------E~s---~~~aA~REl~EEtGl~~~--  117 (245)
                      +..+.+|.+++++ .+|  +|||+||+..+..+||.|++| ||++++|      | +   +.+||+||++|||||++.  
T Consensus        56 g~~h~av~v~v~~-~~g--~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E-~~~~~~~Aa~REl~EElGi~~~~v  131 (235)
T 2dho_A           56 GLLHRAFSVFLFN-TEN--KLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEES-DALGVRRAAQRRLKAELGIPLEEV  131 (235)
T ss_dssp             TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCGGGS
T ss_pred             CceEEEEEEEEEc-CCC--EEEEEEecCcCCCCCCcEEeccCceecCCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence            5677788887776 456  799999999887899999999 5999999      6 6   499999999999999865  


Q ss_pred             ---cceEEEEeCCccc-CCc----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          118 ---LVNVVTILDPIFT-KNG----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       118 ---~~~~lg~l~~~~~-~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                         .+.+++.+..... ..+    ..++.|++...    ..+.++++|+.++.|++++++.+
T Consensus       132 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~----~~~~~~~~Ev~~~~wv~~~el~~  189 (235)
T 2dho_A          132 PPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMN----VTLNPDPNEIKSYCYVSKEELKE  189 (235)
T ss_dssp             CGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHH
T ss_pred             ChhhcEEEEEEEEeccCCCccceeEEEEEEEEEEC----CCCcCChHHEEEEEEEcHHHHHH
Confidence               3567776543221 111    23344555442    23457889999999999999876

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.67  E-value=7.1e-16  Score=127.51  Aligned_cols=105  Identities=18%  Similarity=0.069  Sum_probs=78.6

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      +.+|.+++++  ++  +|||++|...  ..+|.|+||||++|+|| ++++||+||++||||+.+....+++....  ...
T Consensus        40 ~~~v~~ii~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~  110 (189)
T 3cng_A           40 KVIVGCIPEW--EN--KVLLCKRAIA--PYRGKWTLPAGFMENNE-TLVQGAARETLEEANARVEIRELYAVYSL--PHI  110 (189)
T ss_dssp             EEEEEEEEEE--TT--EEEEEEESSS--SSTTCEECSEEECCTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEE--GGG
T ss_pred             ceEEEEEEEe--CC--EEEEEEccCC--CCCCeEECceeeccCCC-CHHHHHHHHHHHHHCCccccceeEEEEec--CCC
Confidence            3455555554  45  8999999875  34789999999999999 99999999999999999876666655322  223


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL  170 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~  170 (245)
                      ...++.|.+.....   .+. ..+|+.++.|++++++.
T Consensus       111 ~~~~~~f~~~~~~~---~~~-~~~E~~~~~W~~~~el~  144 (189)
T 3cng_A          111 SQVYMLFRAKLLDL---DFF-PGIESLEVRLFGEQEIP  144 (189)
T ss_dssp             TEEEEEEEEEECCS---CCC-CCTTEEEEEEECTTTCC
T ss_pred             cEEEEEEEEEeCCC---ccC-CCccceeEEEECHHHcC
Confidence            45566677766542   122 35789999999999987

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.67  E-value=3.6e-16  Score=135.28  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCc-eecCCC------CCCH---HHHHHHHHHHHHCCCCC--
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPG-GKREEN------DADD---AGTALREAKEEIGLDPS--  117 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPG-G~ve~g------E~s~---~~aA~REl~EEtGl~~~--  117 (245)
                      +..+.+|.+++++ .+|  +|||+||+..+..+||.|++|+ |++++|      | ++   .+||+||++|||||++.  
T Consensus        67 g~~h~av~v~v~~-~~g--~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~E-t~~~~~eAA~REl~EElGi~~~~v  142 (246)
T 2pny_A           67 GLLHRAFSVVLFN-TKN--RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEK-DAIGVRRAAQRRLQAELGIPGEQI  142 (246)
T ss_dssp             TCCEEEEEEEEEC-TTC--CEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCG-GGHHHHHHHHHHHHHHHCCCTTTC
T ss_pred             CcEEEEEEEEEEe-CCC--EEEEEEecCCCCCCCCceEeccCceeccCCcccccc-cchhHHHHHHHHHHHHHCCCcccc
Confidence            5667788887776 456  7999999998878999999995 999999      7 76   99999999999999875  


Q ss_pred             ---cceEEEEeCCccc-CCc----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          118 ---LVNVVTILDPIFT-KNG----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       118 ---~~~~lg~l~~~~~-~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                         .+.+++.+..... ..+    ..++.|++...    ..+.++++|+.++.|++++++.+
T Consensus       143 ~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~----~~~~~~~~Ev~~~~wv~~eel~~  200 (246)
T 2pny_A          143 SPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKN----VTLNPDPSETKSILYLSQEELWE  200 (246)
T ss_dssp             CGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHH
T ss_pred             CccccEEEEEEEEEecCCCceeeeEEEEEEEEEEC----CCCCCChHHeeEEEEEeHHHHHH
Confidence               3566776543221 111    23344555432    23457889999999999999876

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.67  E-value=1.7e-16  Score=126.10  Aligned_cols=106  Identities=16%  Similarity=0.250  Sum_probs=75.0

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .+|.+++++  ++  +|||++|       +|.|+||||++++|| ++.+||+||++||||+.+...++++.....+...+
T Consensus        20 ~~~~~ii~~--~~--~vLl~~r-------~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   87 (154)
T 2pqv_A           20 VRATALIVQ--NH--KLLVTKD-------KGKYYTIGGAIQVNE-STEDAVVREVKEELGVKAQAGQLAFVVENRFEVDG   87 (154)
T ss_dssp             EEEEECCEE--TT--EEEEEEE-------TTEEECEEEECBTTC-CHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEEE--CC--EEEEEec-------CCeEECcccCcCCCC-CHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCC
Confidence            344444454  45  8999998       478999999999999 99999999999999999887777776654333222


Q ss_pred             e----EEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 I----IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~----~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .    ..+.|.+.+..... ....+.+|+.++.|+|++++.+.
T Consensus        88 ~~~~~~~~~f~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           88 VSYHNIEFHYLVDLLEDAP-LTMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEEEEEEEEEEESSCCC-SEEEETTEEEEEEEEEGGGGGGS
T ss_pred             CcceEEEEEEEEEecCCCC-cccCCCCceeeEEEeEHHHHhhc
Confidence            2    23345555543211 11123467899999999999874

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.2e-16  Score=125.84  Aligned_cols=97  Identities=22%  Similarity=0.198  Sum_probs=65.1

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||++|..     +|.|+||||++|+|| ++.+||+||++||||+.+..+..+..+... ...+...+.|++..... .
T Consensus        18 ~vLl~~r~~-----~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~   89 (146)
T 2jvb_A           18 KILLVQGTE-----SDSWSFPRGKISKDE-NDIDCCIREVKEEIGFDLTDYIDDNQFIER-NIQGKNYKIFLISGVSE-V   89 (146)
T ss_dssp             EEEEECCSS-----SSCCBCCEECCCSSS-CHHHHHHHHHHHHTSCCCSSSSCSSCEEEE-EETTEEEEEEEECCCCS-S
T ss_pred             EEEEEEEcC-----CCcEECCcccCCCCC-CHHHHHHHHHHHHHCCCchHhccccccccc-ccCCceEEEEEEEeccc-c
Confidence            899999764     489999999999999 999999999999999988754222111110 11222333343332221 1


Q ss_pred             CCCCC-CcccceeEEEEccccccccC
Q 025996          149 FIPAP-NTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       149 ~~~~~-~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ....+ +.+|+.++.|+|++++.+..
T Consensus        90 ~~~~~~~~~E~~~~~W~~~~el~~~~  115 (146)
T 2jvb_A           90 FNFKPQVRNEIDKIEWFDFKKISKTM  115 (146)
T ss_dssp             SCCCCCCSSSCCCEEEEEHHHHHTGG
T ss_pred             ccCCcCCcchhheeEEeEHHHHHhhh
Confidence            11222 36899999999999998743

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.66  E-value=3.9e-16  Score=130.94  Aligned_cols=107  Identities=16%  Similarity=0.193  Sum_probs=77.2

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF--  129 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~--  129 (245)
                      .+.+|.+++++  ++  +|||++|..     +|.|+||||++|+|| ++.+||+||++||||+.+....+++.+....  
T Consensus        67 ~~~~v~~vv~~--~~--~vLLv~r~~-----~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~  136 (205)
T 3q1p_A           67 PKVDIRAVVFQ--NE--KLLFVKEKS-----DGKWALPGGWADVGY-TPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQ  136 (205)
T ss_dssp             CEEEEEEEEEE--TT--EEEEEEC--------CCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHS
T ss_pred             CcceEEEEEEE--CC--EEEEEEEcC-----CCcEECCcCccCCCC-CHHHHHHHHHHHHHCCccccceEEEEEeccccC
Confidence            34555555554  45  899999873     589999999999999 9999999999999999988888888775421  


Q ss_pred             ---cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          130 ---TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ---~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                         .........|.+.+...   .+.++ +|+.++.|+|++++.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~E~~~~~w~~~~el~~l  178 (205)
T 3q1p_A          137 PSPSATHVYKIFIGCEIIGG---EKKTS-IETEEVEFFGENELPNL  178 (205)
T ss_dssp             CCCCSSCEEEEEEEEEEEEE---CCCCC-TTSCCEEEECTTSCCCB
T ss_pred             CCCCCceEEEEEEEEEecCC---ccCCC-CcceEEEEEeHHHhhhc
Confidence               11233444555555432   23344 89999999999998754

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.66  E-value=1.6e-15  Score=126.01  Aligned_cols=113  Identities=13%  Similarity=0.160  Sum_probs=69.6

Q ss_pred             CCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCC-CCcc----eEEEEe
Q 025996           51 KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLD-PSLV----NVVTIL  125 (245)
Q Consensus        51 ~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~-~~~~----~~lg~l  125 (245)
                      ..+.++.+++++. ++ .+|||++|..     .|.|+||||++|+|| ++.+||+||++||||+. +..+    ..+...
T Consensus        43 ~~h~~~~~vv~~~-~~-~~vLL~~r~~-----~g~w~lPgG~ve~gE-s~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~  114 (197)
T 3fcm_A           43 IAHLTSSAFAVNK-ER-NKFLMIHHNI-----YNSWAWTGGHSDNEK-DQLKVAIKELKEETGVKNPTPLLDKAFALDVL  114 (197)
T ss_dssp             SEEEEEEEEEECT-TS-CEEEEEEETT-----TTEEECEEEECTTCC-BHHHHHHHHHHHHHCCSSCEESCSSCSEEEEE
T ss_pred             CccEEEEEEEEEC-CC-CEEEEEEecC-----CCCEECCccccCCCC-CHHHHHHHHHHHHHCCCcccccCCCceEEEEe
Confidence            4455666666653 32 3899999873     479999999999999 99999999999999998 3211    111111


Q ss_pred             CCc-cc------CCceEE-EEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          126 DPI-FT------KNGIIV-VPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       126 ~~~-~~------~~~~~v-~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ... ..      .....+ ..|++.+..  .....++++|+.++.|+|++++.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~  168 (197)
T 3fcm_A          115 TVNGHIKRGKYVSSHLHLNLTYLIECSE--DETLMLKEDENSGVMWIPFNEISKYC  168 (197)
T ss_dssp             EECCEEETTEEECCEEEEEEEEEEECCT--TSCCCCCC----CEEEEEGGGHHHHC
T ss_pred             eecCccccCcccCCceeEEEEEEEEeCC--CcccCCCcccccceEEccHHHHHhhc
Confidence            100 00      001111 334444443  22345678999999999999998653

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.66  E-value=5e-16  Score=136.06  Aligned_cols=94  Identities=14%  Similarity=0.070  Sum_probs=75.9

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||+||+..  . +|.|+||||++|+|| |+++||+||++||||+.+..+++++.....+.  ...+..|++.+...  
T Consensus       152 ~vLL~rr~~~--~-~g~w~lPgG~vE~GE-t~eeAa~REv~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f~a~~~~~--  223 (269)
T 1vk6_A          152 SILLAQHTRH--R-NGVHTVLAGFVEVGE-TLEQAVAREVMEESGIKVKNLRYVTSQPWPFP--QSLMTAFMAEYDSG--  223 (269)
T ss_dssp             EEEEEEETTT--C-SSCCBCEEEECCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEETT--EEEEEEEEEEEEEC--
T ss_pred             EEEEEEecCC--C-CCcEECCcCcCCCCC-CHHHHHHHHHHHHhCceeeeEEEEEEEecCCC--CEEEEEEEEEECCC--
Confidence            8999999865  2 689999999999999 99999999999999999998888887754332  33555666665432  


Q ss_pred             CCCCCCcccceeEEEEccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                       .+.++++|+.++.|++++++..
T Consensus       224 -~~~~~~~E~~~~~W~~~~el~~  245 (269)
T 1vk6_A          224 -DIVIDPKELLEANWYRYDDLPL  245 (269)
T ss_dssp             -CCCCCTTTEEEEEEEETTSCCS
T ss_pred             -CcCCCCcceEEEEEEEHHHhhh
Confidence             2346778999999999999865

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.65  E-value=4.8e-16  Score=133.36  Aligned_cols=121  Identities=27%  Similarity=0.338  Sum_probs=86.5

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCC-------------------HHHHHHHHHHH
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDAD-------------------DAGTALREAKE  110 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s-------------------~~~aA~REl~E  110 (245)
                      ..|.+|++|++.+..+|+++|||+||+.....++|.|.||||++|++|.+                   +..||+||++|
T Consensus         6 ~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~E   85 (232)
T 3qsj_A            6 DIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAE   85 (232)
T ss_dssp             CEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHH
Confidence            56788888877764333389999999998777899999999999999833                   58999999999


Q ss_pred             HHCCCCCcce---------------------------------------EEEEeCCc----ccCCceEEEEEEEEeCCCC
Q 025996          111 EIGLDPSLVN---------------------------------------VVTILDPI----FTKNGIIVVPVIGILPDRN  147 (245)
Q Consensus       111 EtGl~~~~~~---------------------------------------~lg~l~~~----~~~~~~~v~~~v~~~~~~~  147 (245)
                      ||||.+..-.                                       .|..+...    .....+....|++.+..  
T Consensus        86 E~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq--  163 (232)
T 3qsj_A           86 EIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQH--  163 (232)
T ss_dssp             HHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSS--
T ss_pred             HhCceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCC--
Confidence            9999653210                                       01111111    11234666777777652  


Q ss_pred             CCCCCCCcccceeEEEEcccccccc
Q 025996          148 SFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       148 ~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ......+.+|+.++.|++++++++.
T Consensus       164 ~~~v~~d~~E~~~~~W~~p~eal~~  188 (232)
T 3qsj_A          164 LGEPRLHGAELDAALWTPARDMLTR  188 (232)
T ss_dssp             CCCCCCCSSSEEEEEEEEHHHHHHH
T ss_pred             CCCCCCCCCceEEEEEEcHHHHHHH
Confidence            1112468899999999999999764

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.65  E-value=1.3e-16  Score=133.08  Aligned_cols=95  Identities=20%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      +|||++|...    +|.|+||||++|+|| ++++||+||++||||+.+...++++.+....  ....++.|++.+.....
T Consensus        55 ~vLLv~r~~~----~g~W~lPgG~ve~gE-t~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~f~~~~~~~~~  127 (194)
T 2fvv_A           55 EVLLVSSSRH----PDRWIVPGGGMEPEE-EPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLE  127 (194)
T ss_dssp             EEEEEECSSC----TTSEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTEEEEEEEEEEEEECS
T ss_pred             EEEEEEEeCC----CCcEECCCCcCCCCc-CHHHHHHHHHHHHhCCccccceEEEEEEcCC--CceEEEEEEEEEccccC
Confidence            8999998753    589999999999999 9999999999999999988888888776322  23345556655432111


Q ss_pred             CCCCCCcccceeEEEEccccccc
Q 025996          149 FIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                       ....+..+..++.|++++++.+
T Consensus       128 -~~~~~~e~~~~~~W~~~~el~~  149 (194)
T 2fvv_A          128 -DWEDSVNIGRKREWFKIEDAIK  149 (194)
T ss_dssp             -SCHHHHHHCCCEEEEEHHHHHH
T ss_pred             -CCCCcccccceEEEEEHHHHHH
Confidence             1111122457899999999865

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.65  E-value=9.4e-17  Score=135.64  Aligned_cols=123  Identities=19%  Similarity=0.174  Sum_probs=88.4

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce-----EEEEeCCcccCCceEEEEEEEEe
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVN-----VVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~-----~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      +|||++|      ++|.|+||||++|+||.++++||+||++||||+.+..++     .++.....++ ....++.|++.+
T Consensus        57 ~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~~~~~~f~~~~  129 (212)
T 1u20_A           57 VLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QKCVTHFYIKEL  129 (212)
T ss_dssp             EEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SCEEEEEEEEEC
T ss_pred             EEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-CcEEEEEEEEEe
Confidence            8999998      368999999999999867999999999999999877543     5666544444 566777777765


Q ss_pred             CCCC-------CCCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechhHHHHHHHHH
Q 025996          144 PDRN-------SFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVAS  216 (245)
Q Consensus       144 ~~~~-------~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~Ta~il~~~~~  216 (245)
                      ....       ......+++|+.++.|+|++++.+....             .|.| +    ....||+++++|+..+..
T Consensus       130 ~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~~~~-------------~p~f-~----~~~~i~~a~~~l~~~l~~  191 (212)
T 1u20_A          130 KLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGG-------------LPAF-L----CNNFIGNSKSQLLYALRS  191 (212)
T ss_dssp             CHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTB-------------HHHH-T----TSCBCTTHHHHHHHHHHH
T ss_pred             cCCCcccccccccccccCCcceEEEEEEEHHHhhhhhcC-------------Cchh-h----hhhhhHHHHHHHHHHHHh
Confidence            4210       0011234578999999999999654110             1111 1    246899999999988765

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.64  E-value=2.2e-15  Score=122.17  Aligned_cols=83  Identities=24%  Similarity=0.283  Sum_probs=62.3

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEeCCCCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNS  148 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~~~~  148 (245)
                      ++||++|.      +|.|+||||++|+|| ++.+||+||++||||+.+..+.+++.+....    ...+.|++.+..   
T Consensus        28 ~vLL~~r~------~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~~f~~~~~~---   93 (163)
T 3f13_A           28 GVLVTASR------GGRYNLPGGKANRGE-LRSQALIREIREETGLRINSMLYLFDHITPF----NAHKVYLCIAQG---   93 (163)
T ss_dssp             EEEEEECC---------BBCSEEECCTTC-CHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEEEEEEEC-C---
T ss_pred             EEEEEEEC------CCeEECCceeCCCCC-CHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEEEEEEEECC---
Confidence            78999875      378999999999999 9999999999999999998888887754322    444556665432   


Q ss_pred             CCCCCCcccceeEEEEccc
Q 025996          149 FIPAPNTAEVDAIFDAPLE  167 (245)
Q Consensus       149 ~~~~~~~~Ev~~v~wvpl~  167 (245)
                       .+.++ +|+.++.|++.+
T Consensus        94 -~~~~~-~E~~~~~W~~~~  110 (163)
T 3f13_A           94 -QPKPQ-NEIERIALVSSP  110 (163)
T ss_dssp             -CCCCC-TTCCEEEEESST
T ss_pred             -cCccC-CCceEEEEECcc
Confidence             23344 499999999943

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.64  E-value=3e-15  Score=131.18  Aligned_cols=111  Identities=22%  Similarity=0.261  Sum_probs=79.3

Q ss_pred             eEEEEEEEEcCCC--cEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCC--cceEEEEeCCcc
Q 025996           54 AAVLVCLFEGNDG--DLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPS--LVNVVTILDPIF  129 (245)
Q Consensus        54 aaV~v~l~~~~~g--~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~--~~~~lg~l~~~~  129 (245)
                      .+|.++++...++  +.+|||++|...  +++|.|+||||++|+|| ++++||+||++||||+.+.  .+..++.+....
T Consensus        40 v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lPGG~ve~gE-s~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~~  116 (273)
T 2fml_A           40 LTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNE-STEDSVLRETKEETGVVISQENIEQLHSFSRPD  116 (273)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTS-CHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTT
T ss_pred             eEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECCccCCCCCc-CHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCCC
Confidence            4444444432233  679999999876  67899999999999999 9999999999999997654  456677664332


Q ss_pred             c-C-CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          130 T-K-NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       130 ~-~-~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      . . .....+.|++.+....    ....+|+.++.|++++++.+
T Consensus       117 r~~~~~~~~~~y~a~~~~~~----~~~~~E~~~~~W~~~~e~~~  156 (273)
T 2fml_A          117 RDPRGWVVTVSYLAFIGEEP----LIAGDDAKEVHWFNLERHGQ  156 (273)
T ss_dssp             SSTTSSEEEEEEEEECCCCC----CCCCTTEEEEEEEEEEEETT
T ss_pred             CCCCceEEEEEEEEEeCCCC----CCCCcceeeEEEEEhhHhhh
Confidence            2 1 2244556667665421    24558999999999998654

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.63  E-value=1.9e-15  Score=125.14  Aligned_cols=95  Identities=18%  Similarity=0.148  Sum_probs=70.0

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce-----EEEEEEEEe
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI-----IVVPVIGIL  143 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~-----~v~~~v~~~  143 (245)
                      +|||++|..     +|.|+||||++|+|| ++.+||+||++||||+.+...++++.+.........     .++.|.+..
T Consensus        16 ~vLL~~r~~-----~g~W~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~   89 (188)
T 3fk9_A           16 QVLLLQKPR-----RGWWVAPGGKMEAGE-SILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATE   89 (188)
T ss_dssp             EEEEEECTT-----TCCEECCEEECCTTC-CHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEEEEEESC
T ss_pred             EEEEEEeCC-----CCeEECCeecccCCC-CHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEEEEEEEEC
Confidence            899999853     589999999999999 999999999999999999888888877655433221     333333332


Q ss_pred             CCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          144 PDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ..   ..+. ...|..++.|++++++.+..
T Consensus        90 ~~---~~~~-~~~e~~~~~W~~~~el~~~~  115 (188)
T 3fk9_A           90 HE---GEML-KQSPEGKLEWKKKDEVLELP  115 (188)
T ss_dssp             EE---SCCC-SEETTEEEEEEEGGGGGGSC
T ss_pred             CC---CCCc-CCCCCEeEEEEEHHHhhhCC
Confidence            21   1122 23566799999999997643

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.62  E-value=9.8e-16  Score=134.25  Aligned_cols=110  Identities=20%  Similarity=0.060  Sum_probs=70.6

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI  134 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  134 (245)
                      +|.+++++..+|  +|||++|...    +|.|+||||++|+|| ++++||+||++||||+++..+..+..+.. ....+.
T Consensus       103 ~v~avv~~~~~~--~vLLv~r~~~----~g~W~lPgG~ve~gE-s~~eAA~REl~EEtGl~~~~l~~~~~~~~-~~~~~~  174 (271)
T 2a6t_A          103 VRGAIMLDMSMQ--QCVLVKGWKA----SSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFID-MTIRGQ  174 (271)
T ss_dssp             EEEEEEBCSSSS--EEEEEEESST----TCCCBCSEEECCTTC-CHHHHHHHHHHHHHCCCCTTTCCTTCEEE-EEETTE
T ss_pred             eEEEEEEECCCC--EEEEEEEeCC----CCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCceeeeeeeeecc-CCcCCc
Confidence            444445553235  8999998653    589999999999999 99999999999999998876432211100 011223


Q ss_pred             EEEEEEEEeCCCCCCCCC-CCcccceeEEEEccccccccC
Q 025996          135 IVVPVIGILPDRNSFIPA-PNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       135 ~v~~~v~~~~~~~~~~~~-~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .++.|++..... ..... .+.+|+.++.|++++++.+..
T Consensus       175 ~~~~f~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~  213 (271)
T 2a6t_A          175 NVRLYIIPGISL-DTRFESRTRKEISKIEWHNLMDLPTFK  213 (271)
T ss_dssp             EEEEEEECCCCT-TCCCC------EEEEEEEEGGGSTTCC
T ss_pred             eEEEEEEEEecC-cccCCCCCccceeEEEEEEHHHHHHHH
Confidence            455555544321 11112 256899999999999998753

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.60  E-value=2.5e-15  Score=136.43  Aligned_cols=104  Identities=16%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC------------
Q 025996           65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN------------  132 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~------------  132 (245)
                      +++.+|||++|...     |.|+||||++|+|| ++++||+||++|||||.+....+++.....+...            
T Consensus        35 ~~~~~vLLv~r~~~-----g~W~lPgG~ve~gE-s~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~  108 (364)
T 3fjy_A           35 LDSIEVCIVHRPKY-----DDWSWPKGKLEQNE-THRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTA  108 (364)
T ss_dssp             HTTEEEEEEEETTT-----TEEECCEEECCTTC-CHHHHHHHHHHHHHSCCEEEEEEEEEEC------------------
T ss_pred             CCceEEEEEEcCCC-----CCEECCcCCCCCCC-CHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCccccccccccc
Confidence            34679999999543     89999999999999 9999999999999999988888888766554321            


Q ss_pred             -ceEEEEEEEEeCCCC---------CCCCCCCcccceeEEEEccccccccCC
Q 025996          133 -GIIVVPVIGILPDRN---------SFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       133 -~~~v~~~v~~~~~~~---------~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                       ...++.|++......         .....++++|+.++.|+|++++.+...
T Consensus       109 ~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  160 (364)
T 3fjy_A          109 DTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILS  160 (364)
T ss_dssp             ---CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCS
T ss_pred             CceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhc
Confidence             245566666655321         011235678999999999999877543

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.58  E-value=3.2e-15  Score=119.43  Aligned_cols=57  Identities=30%  Similarity=0.433  Sum_probs=46.3

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEE
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVV  122 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~l  122 (245)
                      |.+++++  ++  +|||++|..     +|.|+||||++|+|| ++.+||+||++||||+.+.....+
T Consensus         4 ~~~vi~~--~~--~vLL~~r~~-----~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~   60 (156)
T 1k2e_A            4 TSGVLVE--NG--KVLLVKHKR-----LGVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFT   60 (156)
T ss_dssp             EEEECEE--TT--EEEEEECTT-----TCSEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEECCCC
T ss_pred             EEEEEEE--CC--EEEEEEEcC-----CCcEECCeeecCCCC-CHHHHHHHHHHHHHCCcceeccce
Confidence            3344454  45  899999874     489999999999999 999999999999999987655543

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.58  E-value=6.4e-16  Score=130.72  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             EEEEEEEcCCCcEEEEEEEeCCCCC--CCCCCccC-CceecCCCCCC------HHHHHHHHHHHHHCCCCCcceEEEEeC
Q 025996           56 VLVCLFEGNDGDLRVFLTKRSSNLS--SHSGEVAL-PGGKREENDAD------DAGTALREAKEEIGLDPSLVNVVTILD  126 (245)
Q Consensus        56 V~v~l~~~~~g~~~vLL~rR~~~~~--~~~G~w~f-PGG~ve~gE~s------~~~aA~REl~EEtGl~~~~~~~lg~l~  126 (245)
                      +.++++.. +|  ++|+++|.....  ..+|.|+| |||++|+|| +      +++||+||++|||||++....+++.+.
T Consensus        70 i~~~II~~-~g--rvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GE-s~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~  145 (211)
T 3e57_A           70 IPYVVIMD-GD--RVLITKRTTKQSEKRLHNLYSLGIGGHVREGD-GATPREAFLKGLEREVNEEVDVSLRELEFLGLIN  145 (211)
T ss_dssp             EEEEEEEE-TT--EEEEEEC------------CBSSEECCCBGGG-CSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEE-CC--EEEEEEECCCCCcccccCCcccccceEEeCCC-CCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEe
Confidence            33344442 56  899999987642  26689999 999999999 7      499999999999999888888888876


Q ss_pred             CcccC-Cc-eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          127 PIFTK-NG-IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       127 ~~~~~-~~-~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..... .. .....|.+....     ..+...|+.++.|+++++|.+.
T Consensus       146 ~~~~~~~~~~l~~~f~~~~~~-----g~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          146 SSTTEVSRVHLGALFLGRGKF-----FSVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             CCSSHHHHTEEEEEEEEEEEE-----EEESCTTTCEEEEEEHHHHHHH
T ss_pred             ccCCCCCeEEEEEEEEEEeCC-----ceeCCCCeEEEEEEEHHHHHHh
Confidence            53211 11 222345555431     2345678899999999999774

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.57  E-value=2.3e-14  Score=127.92  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=73.0

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEE------EEeC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVV------TILD  126 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~l------g~l~  126 (245)
                      +.+|.++++.  ++  +|||++|...  ..+|.|+||||++|+|| ++++||+||++||||+.+....++      ..+.
T Consensus       203 ~~~v~~vi~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~  275 (341)
T 2qjo_A          203 FITTDAVVVQ--AG--HVLMVRRQAK--PGLGLIALPGGFIKQNE-TLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD  275 (341)
T ss_dssp             EEEEEEEEEE--TT--EEEEEECCSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEEC
T ss_pred             ceEEEEEEEe--CC--EEEEEEecCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHhhhhCCccccccccccccceEEEe
Confidence            3455555554  45  8999999864  45899999999999999 999999999999999998755432      2222


Q ss_pred             Ccc-c-CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          127 PIF-T-KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       127 ~~~-~-~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ... . ......+.|++.+.... .....+++|+.++.|+|++++.+.
T Consensus       276 ~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          276 APGRSLRGRTITHAYFIQLPGGE-LPAVKGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             CTTSCTTSCEEEEEEEEECCSSS-CCCCC------CEEEEEHHHHHHT
T ss_pred             CCCCCCCCcEEEEEEEEEecCCC-cCccCCCCceeeEEEeeHHHHhhh
Confidence            111 1 11234456666654321 111245689999999999998863

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.56  E-value=4.7e-14  Score=126.67  Aligned_cols=113  Identities=15%  Similarity=0.122  Sum_probs=76.8

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceE------EEEeC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNV------VTILD  126 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~------lg~l~  126 (245)
                      ..+|.++++.  ++  +|||++|...  ..+|.|+||||++|+|| ++++||+||++||||+.+....+      ...+.
T Consensus       208 ~~~v~~vv~~--~~--~vLL~~r~~~--~~~g~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~  280 (352)
T 2qjt_B          208 FVTVDALVIV--ND--HILMVQRKAH--PGKDLWALPGGFLECDE-TIAQAIIRELFEETNINLTHEQLAIAKRCEKVFD  280 (352)
T ss_dssp             EEEEEEEEEE--TT--EEEEEEESSS--SSTTCEECSEEECCTTS-CHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEEC
T ss_pred             ceEEEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCCcCCCCC-CHHHHHHHHHHHhhCCCcccchhcceeeeeEEec
Confidence            3455555553  45  8999999875  45799999999999999 99999999999999999875332      12222


Q ss_pred             Cccc--CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcc-cccccc
Q 025996          127 PIFT--KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPL-EMFLKD  172 (245)
Q Consensus       127 ~~~~--~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl-~el~~~  172 (245)
                      ....  ......+.|++.+..........+++|+.++.|+++ +++.+.
T Consensus       281 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          281 YPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             CTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT
T ss_pred             CCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh
Confidence            1111  112345566666653221111234689999999999 998763

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.52  E-value=1.8e-14  Score=131.31  Aligned_cols=95  Identities=18%  Similarity=0.208  Sum_probs=77.7

Q ss_pred             CCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEe
Q 025996           64 NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        64 ~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      .+|  +|||+||... +.++|.|+||||++|.|  ++++|+.||++||||+.+...+.++.+.+.++.....++.|.+.+
T Consensus       250 ~~g--~vLL~rR~~~-g~~~GlWefPGG~ve~g--t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~~~~  324 (369)
T 3fsp_A          250 DEG--RVLIRKRDST-GLLANLWEFPSCETDGA--DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRL  324 (369)
T ss_dssp             SSS--EEEEEECCSS-STTTTCEECCEEECSSS--CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEEE
T ss_pred             CCC--EEEEEECCCC-CCcCCcccCCCcccCCC--CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEEEEE
Confidence            456  8999999875 58999999999999999  689999999999999998777777777666666666677777766


Q ss_pred             CCCCCCCCCCCcccceeEEEEccccccc
Q 025996          144 PDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      ...        ..|..++.|++++++.+
T Consensus       325 ~~~--------~~e~~~~~Wv~~~el~~  344 (369)
T 3fsp_A          325 VHG--------GPVEEPYRLAPEDELKA  344 (369)
T ss_dssp             CCS--------SCCCTTEEEEEGGGGGG
T ss_pred             cCC--------CCCccccEEeeHHHhhh
Confidence            431        36788999999999876

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.49  E-value=4.8e-14  Score=119.66  Aligned_cols=130  Identities=16%  Similarity=0.127  Sum_probs=83.5

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCc--c---eEEEEeCCcccCCceEEEEEEEEe
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSL--V---NVVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~--~---~~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      .+|++.|.      +|.|+||||++|+||.++++||+||++||||+.+..  +   ..+......  ......+.|.+.+
T Consensus        66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~--~~~~~~~~f~~~l  137 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGS--GPRVVAHFYAKRL  137 (217)
T ss_dssp             EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECS--SSSEEEEEEEEEC
T ss_pred             cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCC--CCeEEEEEEEEEe
Confidence            46666664      478999999999998679999999999999998763  2   223332111  1234455566665


Q ss_pred             CCCCC-------CCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechhHHHHHHHHH
Q 025996          144 PDRNS-------FIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILINVAS  216 (245)
Q Consensus       144 ~~~~~-------~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~Ta~il~~~~~  216 (245)
                      .....       .....+.+|+.+++|+|++++.+..+.             +|.|     -....|||+++.|+..+..
T Consensus       138 ~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d~~~~-------------~P~~-----L~~~~l~~~~~~i~~~l~~  199 (217)
T 2xsq_A          138 TLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGG-------------LPTF-----LENSFIGSAREQLLEALQD  199 (217)
T ss_dssp             CHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTTSSTB-------------HHHH-----TTSCBCTTHHHHHHHHHHH
T ss_pred             ccccceecccccccccccCCceeeEEEEEHHHhhhcccc-------------CcHH-----HHHHHHHHHHHHHHHHHHh
Confidence            42110       001234579999999999999753221             1111     1245899999999999987


Q ss_pred             HHhCCCCC
Q 025996          217 VVHQCPPA  224 (245)
Q Consensus       217 ~~~~~~p~  224 (245)
                      .-+-.+.+
T Consensus       200 ~~~~~~~~  207 (217)
T 2xsq_A          200 LGLLQSGS  207 (217)
T ss_dssp             TTTTC---
T ss_pred             cCCCCHHH
Confidence            65544443

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.36  E-value=6.3e-12  Score=111.11  Aligned_cols=43  Identities=33%  Similarity=0.344  Sum_probs=39.9

Q ss_pred             cEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCC
Q 025996           67 DLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLD  115 (245)
Q Consensus        67 ~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~  115 (245)
                      .++|||++|...     |.|+||||++|+|| ++.+||+||++||||+.
T Consensus       138 ~l~vLl~~r~~~-----g~W~lPGG~Ve~GE-s~~eAA~REl~EETGl~  180 (292)
T 1q33_A          138 ILQFVAIKRKDC-----GEWAIPGGMVDPGE-KISATLKREFGEEALNS  180 (292)
T ss_dssp             CEEEEEEECTTT-----CSEECCCEECCTTC-CHHHHHHHHHHHHHSCG
T ss_pred             ceEEEEEEecCC-----CcEeCCCcccCCCC-CHHHHHHHHHHHHhCCc
Confidence            578999999763     89999999999999 99999999999999997

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.01  E-value=3.5e-10  Score=93.58  Aligned_cols=69  Identities=13%  Similarity=0.054  Sum_probs=51.5

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCC-CCCcceEEEEeCCcccCCceEEEEEEEEeC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL-DPSLVNVVTILDPIFTKNGIIVVPVIGILP  144 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl-~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~  144 (245)
                      .||++.|-+      |.|+||||+||+||.|+++|+.||+.||+|+ .+...+++......+. .....+.|.+.+.
T Consensus        45 ~iLmQ~R~~------G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl~  114 (214)
T 3kvh_A           45 SVLMQMRFD------GLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQLT  114 (214)
T ss_dssp             EEEEEEETT------SCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECC
T ss_pred             eEEEeeeeC------CEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEee
Confidence            478888664      7899999999999989999999999999997 5777777776654443 3566677777655

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.96  E-value=5.4e-09  Score=87.17  Aligned_cols=57  Identities=21%  Similarity=0.248  Sum_probs=47.9

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCC
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL  114 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl  114 (245)
                      +.|+.+++|+++. +++.++|||.++..      +.|.||||++|+|| +.++|+.||+.||+|+
T Consensus        56 g~R~sV~avil~~-~~~~phVLLlq~~~------~~f~LPGGkle~gE-~~~eaL~REL~EELg~  112 (208)
T 3bho_A           56 GMRRTVEGVLIVH-EHRLPHVLLLQLGT------TFFKLPGGELNPGE-DEVEGLKRLMTEILGR  112 (208)
T ss_dssp             CSEEEEEEEEEEE-ETTEEEEEEEEEET------TEEECSEEECCTTC-CHHHHHHHHHHHHHCC
T ss_pred             CCceEEEEEEEEc-CCCCcEEEEEEcCC------CcEECCCcccCCCC-CHHHHHHHHHHHHhCC
Confidence            5677777777776 35557899999753      47999999999999 9999999999999995

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.66  E-value=5.6e-08  Score=86.84  Aligned_cols=94  Identities=16%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHH-CCCCCcceEEEEeCCcccC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEI-GLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEt-Gl~~~~~~~lg~l~~~~~~  131 (245)
                      +..|.+++..  +|  +|||+  .+     .| |++|||.++.++   .++|+||++||+ |+.+....+++.++.... 
T Consensus       183 ~~~vgaii~~--~g--~vLL~--~~-----~G-W~LPG~~~~~~~---~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~-  246 (321)
T 3rh7_A          183 EIRLGAVLEQ--QG--AVFLA--GN-----ET-LSLPNCTVEGGD---PARTLAAYLEQLTGLNVTIGFLYSVYEDKSD-  246 (321)
T ss_dssp             CEEEEEEEES--SS--CEEEB--CS-----SE-EBCCEEEESSSC---HHHHHHHHHHHHHSSCEEEEEEEEEEECTTT-
T ss_pred             cceEEEEEEE--CC--EEEEe--eC-----CC-ccCCcccCCCCh---hHHHHHHHHHHhcCCEEeeceEEEEEEcCCC-
Confidence            4555555543  45  68888  22     37 999998776555   469999999997 999988777777754332 


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                       ......|.|.+...          +..++.|+++++|....
T Consensus       247 -~~~~i~f~~~~~~g----------~~~e~~~f~~~elp~~~  277 (321)
T 3rh7_A          247 -GRQNIVYHALASDG----------APRQGRFLRPAELAAAK  277 (321)
T ss_dssp             -CCEEEEEEEEECSS----------CCSSSEEECHHHHTTCE
T ss_pred             -ceEEEEEEEEeCCC----------CeeeeEEECHHHCCCcc
Confidence             22233555655431          12778899999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	3e-34
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	2e-07
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	9e-07
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	2e-06
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	2e-06
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	3e-06
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	4e-05
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	7e-05
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	2e-04
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	3e-04
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	0.001
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	0.002
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	0.004

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  119 bits (299), Expect = 3e-34
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 52  KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEE 111
           +RAAVLV L    + D RV LT RSS L +H G++A PGG  +  +      ALREA+EE
Sbjct: 31  RRAAVLVALT--READPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEE 87

Query: 112 IGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK 171
           + LDP+ V ++  LD +FT  G  V PV+G +    +      T EV  I    L     
Sbjct: 88  VALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAP-EALDTLRVTPEVAQIITPTLAELRA 146

Query: 172 DENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTAGILIN 213
               R       G +  L+ + +        IW +TA +L +
Sbjct: 147 VPLVRERRTLPDGTEVPLYRYPW----RGLDIWGMTARVLHD 184

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 51  KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKE 110
           KKRAA L    E  +  L   L   S     H     +PGG  E  + + +  A+RE  E
Sbjct: 11  KKRAACLCFRSESEEEVL---LVSSSR----HPDRWIVPGGGMEP-EEEPSVAAVREVCE 62

Query: 111 EIGLDPSLVNVVTILDPIFTKNGIIVVPV 139
           E G+  +L  +V I +    K+   V  +
Sbjct: 63  EAGVKGTLGRLVGIFENQERKHRTYVYVL 91

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 45.2 bits (106), Expect = 9e-07
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 53  RAAVLVCLFEGNDGDLRVFLTKRSSN--LSSHSGEVALPGGKREENDADDAGTALREAKE 110
           RAA +V L    +    + L +          +G   +P G  E+ + +    A+REA E
Sbjct: 13  RAAGVVLL----NERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACE 67

Query: 111 EIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAI----FDAPL 166
           E GL    V  +      F    +I+  V    P+    +    T E+        +   
Sbjct: 68  ETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFA 127

Query: 167 EMFLKDENRRAE 178
           +++   + R  +
Sbjct: 128 QLYAAGQIRMYQ 139

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 15/151 (9%)

Query: 51  KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKE 110
             R   LV + +      RV L  +       +G     GGK +E +      A RE +E
Sbjct: 3   ASRLYTLVLVLQPQ----RVLLGMKKRGF--GAGRWNGFGGKVQEGE-TIEDGARRELQE 55

Query: 111 EIGLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFL 170
           E GL    ++ V  +   F     ++   +              + E+   +    +  +
Sbjct: 56  ESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQ--GTPVESDEMRPCWFQLDQ--I 111

Query: 171 KDENRRAEEREWMGY----KYLLHFFDYEAE 197
             ++   ++  W       K    +F ++ +
Sbjct: 112 PFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQ 142

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 53  RAAVLVCLFEGNDGDL--------RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTA 104
           + A    L   +   L         + +  R        G +  PGG  +  D       
Sbjct: 20  KHACHALLHAPSQAKLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGL 73

Query: 105 LREAKEEIGLDPSLVNVVTI 124
            RE +EE+G   + V V   
Sbjct: 74  KRELEEELGPALATVEVTED 93

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 48  SSTKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALRE 107
           S ++      +CL E  +   RV +  R+   +  SG  A PGG  E  D   A + +RE
Sbjct: 2   SRSQLTILTNICLIEDLETQ-RVVMQYRAPENNRWSG-YAFPGGHVEN-DEAFAESVIRE 58

Query: 108 AKEEIGLDPSLVNVVTILDPIFTKNGIIVVPV 139
             EE GL      +V I +      G  +V  
Sbjct: 59  IYEETGLTIQNPQLVGIKNWPLDTGGRYIVIC 90

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 26/183 (14%)

Query: 25  ERHQNPVTEREAVDSQDSY--------SVAVSSTKKRAAVLVCLFEGNDGDLRVFLTKRS 76
             ++   +  E +              S+ V        +++  +      L+V L +R 
Sbjct: 10  NYYERQASLAEFLTWYHQQELPEYEKPSLTVD-------MVLLCYNKEADQLKVLLIQRK 62

Query: 77  SNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVV---TILDPIFTKNG 133
            +        ALPGG    N++ +  + LRE KEE G+  S  N+    +   P     G
Sbjct: 63  GH--PFRNSWALPGGFVNRNESTED-SVLRETKEETGVVISQENIEQLHSFSRPDRDPRG 119

Query: 134 IIVVPVIGILPDRNSFIPAPNTAEV-----DAIFDAPLEMFLKDENRRAEEREWMGYKYL 188
            +V             I   +  EV     +             E     +      K  
Sbjct: 120 WVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDT 179

Query: 189 LHF 191
           L F
Sbjct: 180 LAF 182

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 5/127 (3%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL 114
           A    LF       ++ +T+R+ +  +  G          +    +    +R  + E+G+
Sbjct: 4   AFSSWLFNAKG---QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 60

Query: 115 DPSLVNVVTILDPIFTK--NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD 172
           + +    +           +GI+   V  +   R +     N  EV       L   L  
Sbjct: 61  EITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHG 120

Query: 173 ENRRAEE 179
            +     
Sbjct: 121 IDATPWA 127

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

Query: 53  RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEI 112
           R A+++     +    +  L K        S     P GK ++++  D   A+RE  EE 
Sbjct: 5   RGAIML-----DMSMQQCVLVKGWK----ASSGWGFPKGKIDKDE-SDVDCAIREVYEET 54

Query: 113 GLDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAP--LEMFL 170
           G D S          +  +   + + +I  +     F            +     L  F 
Sbjct: 55  GFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK 114

Query: 171 KDENRRAEEREWMGYKYLLHFFDY 194
           K++ +  + + +M   +L     +
Sbjct: 115 KNKPQTMKNKFYMVIPFLAPLKKW 138

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 15/136 (11%)

Query: 51  KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKE 110
           + R A  + +      +  + L +        +G   LPGG+ E  +  +     RE  E
Sbjct: 15  QTRYAAYIIVS--KPENNTMVLVQA------PNGAYFLPGGEIEGTETKEE-AIHREVLE 65

Query: 111 EIGLDPSLVNVVTILDPIFT--KNGIIVVPVIGILPDRNSFIPAPNTAEVDAI----FDA 164
           E+G+   +   +   D  F                        +      + +     + 
Sbjct: 66  ELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEE 125

Query: 165 PLEMFLKDENRRAEER 180
            + +  +  +R A E+
Sbjct: 126 AVRLLKRGSHRWAVEK 141

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 7/113 (6%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL 114
           A  + +    DG  ++ + +R+       G +    G   + D     +A REA+EE+G+
Sbjct: 32  ATYIVVH---DGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI 88

Query: 115 DPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLE 167
                              +       +         A    EV  +     E
Sbjct: 89  AGVPFAEHGQFYFEDKNCRVWGALFSCVSHGP----FALQEDEVSEVCWLTPE 137

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 23/144 (15%)

Query: 54  AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIG 113
           + VLV      +G  +V L K         G    PGG  E N+        RE +EE G
Sbjct: 5   SGVLV-----ENG--KVLLVKHK-----RLGVYIYPGGHVEHNETPIEA-VKREFEEETG 51

Query: 114 LDPSLVNVVTILDPIFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE 173
           +    +     +                  P     +        +      L   +K  
Sbjct: 52  IVVEPIGFTYGIIDENAVER----------PMPLVILEEVVKYPEETHIHFDLIYLVKRV 101

Query: 174 NRRAEEREWMGYKYLLHFFDYEAE 197
               +  EW+  + +     +   
Sbjct: 102 GGDLKNGEWIDVREIDRIETFPNV 125

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 55  AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGL 114
            +   +F  N+G++ + L KR+       GE +L GG  ++ D      A R   E  GL
Sbjct: 12  GIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQK-DESVDDAAKRVLAELTGL 68

Query: 115 DPSLVNVVTILDPIFT 130
           +   +  V     I  
Sbjct: 69  ENVYMEQVGAFGAIDR 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	100.0
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.83
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.82
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.81
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.8
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.8
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.8
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.79
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.79
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.78
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.75
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.75
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.75
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.74
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.73
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.73
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.73
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.72
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.72
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.7
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.66
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.65
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.64
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.63
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.62
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.61
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.49
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.47
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.4
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.31

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=7.7e-38  Score=259.30  Aligned_cols=160  Identities=34%  Similarity=0.499  Sum_probs=131.8

Q ss_pred             CCCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996           49 STKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI  128 (245)
Q Consensus        49 ~~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~  128 (245)
                      .+.|+|||+|+++.  +++.+|||+||+.+++.|+|+|+||||++|.+| ++.+||+||++|||||++..+++++.++..
T Consensus        28 ~~~r~aaVlv~~~~--~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E-~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~  104 (187)
T d1nqza_          28 PHYRRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGE-TPTQAALREAQEEVALDPAAVTLLGELDDV  104 (187)
T ss_dssp             --CEEEEEEEEEES--SSSCBBCEEEEC------CCCEECSEEECCTTC-CHHHHHHHHHHHHHCCCGGGCEEEEECCCE
T ss_pred             CCCCccEEEEEEEE--CCCCEEEEEEcCCCCCCCCCeEeCCccccccCC-chhHHHHHHHHHhhccccceeEEeecccce
Confidence            36789999999985  456799999999999899999999999999999 999999999999999999999999999988


Q ss_pred             ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCCCceeEEEEeCeEEEEEEEEeecCCCceEEechhH
Q 025996          129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDENRRAEEREWMGYKYLLHFFDYEAEGNKYVIWALTA  208 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iWG~Ta  208 (245)
                      ++.+++.|++|++.+... ......+++||++++|+|+++|.+...+......+.|..+.+++|.+    +++.|||+||
T Consensus       105 ~~~~~~~V~p~v~~l~~~-~~~~~~~~~EV~~v~~vpl~~L~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~IWG~TA  179 (187)
T d1nqza_         105 FTPVGFHVTPVLGRIAPE-ALDTLRVTPEVAQIITPTLAELRAVPLVRERRTLPDGTEVPLYRYPW----RGLDIWGMTA  179 (187)
T ss_dssp             EETTTEEEEEEEEEECGG-GGGGCCCCTTEEEEECCBHHHHHHSCCEEEEEECTTSCEEEEEEEEE----TTEEEEHHHH
T ss_pred             eeccccEEEEEEEEECCc-cccccccCCcceEEEeccHHHHhcCcccceEEEccCCcEEEEEEEEE----CCcEEhHHHH
Confidence            888899999999988643 23334567899999999999999987766555555677778888888    4789999999


Q ss_pred             HHHHHHHH
Q 025996          209 GILINVAS  216 (245)
Q Consensus       209 ~il~~~~~  216 (245)
                      +||.+|++
T Consensus       180 ~IL~~~le  187 (187)
T d1nqza_         180 RVLHDLLE  187 (187)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99999873

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.3e-20  Score=150.98  Aligned_cols=115  Identities=15%  Similarity=0.098  Sum_probs=89.1

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI  128 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~  128 (245)
                      +..+.+|.+++++ .+|  +|||+||+..+..+||.|++| ||++++|| |+++||+||++|||||+...+..++.+...
T Consensus        27 ~~~h~~v~v~v~~-~~g--~vLl~rR~~~~~~~pg~w~~~~GG~ie~gE-s~~~aa~REl~EE~Gi~~~~~~~~~~~~~~  102 (161)
T d2fkba1          27 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQADE-QLLESARREAEEELGIAGVPFAEHGQFYFE  102 (161)
T ss_dssp             TCCEEEEEEEEEC-SSS--CEEEEEECSSCSSSTTCEESSBCCBCBTTC-CHHHHHHHHHHHHHCCBSCCCEEEEEEEEE
T ss_pred             CCcEeEEEEEEEe-CCC--CEEEEEecCccccccccccccccccccccC-cHHHHHHHHHHHHhCCccceeEEEEEEEee
Confidence            4566788887776 456  799999999888899999886 89999999 999999999999999998888877765432


Q ss_pred             ccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          129 FTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ........+.|.+...    ..+.++++|+.++.|++++++.+.
T Consensus       103 ~~~~~~~~~~~~~~~~----~~~~~~~~Ev~~~~w~~~~el~~~  142 (161)
T d2fkba1         103 DKNCRVWGALFSCVSH----GPFALQEDEVSEVCWLTPEEITAR  142 (161)
T ss_dssp             ETTEEEEEEEEEEECC----CCCCCCTTTEEEEEEECHHHHHTT
T ss_pred             cCCcEEEEEEEEEEEC----CCCcCChhHeeEEEEEeHHHHhhh
Confidence            2223333444444332    234678899999999999998764

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1e-20  Score=150.69  Aligned_cols=111  Identities=15%  Similarity=0.124  Sum_probs=81.7

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccC-CceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc--c
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVAL-PGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF--T  130 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~f-PGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~--~  130 (245)
                      .||.|+|++ .+|  +|||+||+..+..+||.|.+ |||++++|| |+.+||+||++|||||++..++.+.....+.  .
T Consensus         3 ra~~v~i~n-~~g--~vLl~kRs~~k~~~pg~w~~~pgG~ve~gE-t~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~   78 (153)
T d1hzta_           3 LAFSSWLFN-AKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLGE-SNEDAVIRRCRYELGVEITPPESIYPDFRYRATD   78 (153)
T ss_dssp             ECEEEEEEC-TTC--CEEEEEECTTCSSSTTCEEESEEECCCTTC-CHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEEC
T ss_pred             eEEEEEEEE-CCC--EEEEEEeCCCCCCCCCceecccCceeecCC-cHHHHHHHHHHHHcCceeecccceeccccccccc
Confidence            366677777 466  79999999888899999987 999999999 9999999999999999988777654321111  1


Q ss_pred             CCc----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 KNG----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 ~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..+    ..++.|.+...    ..+.+|++|++++.|++++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~----~~~~~~~~Ev~~~~W~~~~el~~~  120 (153)
T d1hzta_          79 PSGIVENEVCPVFAARTT----SALQINDDEVMDYQWCDLADVLHG  120 (153)
T ss_dssp             TTSCEEEEECCEEEEEBC----SCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             cccccceeEEEEEEEeeC----CCccCChhheeEEEEeeHHHHHHH
Confidence            111    11222333322    235678899999999999998763

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.81  E-value=2.7e-20  Score=149.09  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=79.3

Q ss_pred             CCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCC-ceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCC--
Q 025996           51 KKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALP-GGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDP--  127 (245)
Q Consensus        51 ~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fP-GG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~--  127 (245)
                      ..+.+|.+++++ .+|  ++||+||+..+..+||.|++| ||++++|| |+.+||+||++|||||++....++.....  
T Consensus        26 ~~~~~v~~~v~~-~~g--~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gE-s~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~  101 (162)
T d2o5fa1          26 ERVRVVNAFLRN-SQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSGE-TYEEAFRREAREELNVEIDALSWRPLASFSP  101 (162)
T ss_dssp             GGSEEEEEEEEC-TTS--CEEEEEC-------CCSBCCSEEEECBTTC-CHHHHHHHHHHHHHCCCGGGSEEEEEEEECT
T ss_pred             CeEEEEEEEEEc-CCC--CEEEEEeccCccccccccccccCCcccCCC-ChhhhhhhhhhheeCcceeeEEEEEEEEecc
Confidence            445677777776 466  799999999888999999887 99999999 99999999999999999887765544332  


Q ss_pred             cccCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          128 IFTKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       128 ~~~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ........+..|.+...    ..+.++++|+.++.|+++++++..
T Consensus       102 ~~~~~~~~~~~~~~~~~----~~~~~~~~Ev~~~~W~~~eel~~~  142 (162)
T d2o5fa1         102 FQTTLSSFMCVYELRSD----ATPIFNPNDISGGEWLTPEHLLAR  142 (162)
T ss_dssp             TTSSCSSEEEEEEEECS----SCCCCCTTTCSEEEEECHHHHHHH
T ss_pred             ccccceEEEEEEEEecC----CCccCChhHeeEEEEeeHHHHHHH
Confidence            22222233333444332    234678899999999999998764

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.1e-20  Score=143.83  Aligned_cols=100  Identities=21%  Similarity=0.303  Sum_probs=76.7

Q ss_pred             CCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEEEEEEEe
Q 025996           64 NDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVVPVIGIL  143 (245)
Q Consensus        64 ~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~~~v~~~  143 (245)
                      .+|  +|||+||+.. +.++|.|+||||++|.|| |+.+||.||++||||+.+....+++.....+......++.|.+  
T Consensus        14 ~~~--~vLl~~R~~~-~~~~g~W~~PgG~ve~gE-s~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~--   87 (129)
T d1puna_          14 ENN--EIFITRRAAD-AHMANKLEFPGGKIEMGE-TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLV--   87 (129)
T ss_dssp             TTS--CEEEBCCCSS-CSCTTCCBCSCCSCTTTS-CTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEEEEC--
T ss_pred             CCC--EEEEEEecCC-CCCCCcEECCcceecCCC-chhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEEEEE--
Confidence            455  7999999876 478999999999999999 9999999999999999998888777766554444444444433  


Q ss_pred             CCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          144 PDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       144 ~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ... .  ..+...|+.++.|++++++.+.
T Consensus        88 ~~~-~--~~~~~~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          88 ERW-E--GEPWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             CCC-S--SCCCTTSSSCCEEECGGGCCTT
T ss_pred             eec-c--CcCCCCccceEEEEEHHHcccC
Confidence            221 1  2344578899999999998653

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.80  E-value=1.2e-19  Score=143.45  Aligned_cols=113  Identities=16%  Similarity=0.213  Sum_probs=85.0

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC-
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK-  131 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~-  131 (245)
                      ..+|-++++...+++.+|||++|+..  +++|.|++|||++|.|| ++++||+||++||||+++..++.++.+...... 
T Consensus        10 ~v~Vd~Vi~~~~~~~~~vLLv~R~~~--p~~g~W~lPGG~ie~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   86 (147)
T d2fb1a2          10 YLGIDCIIFGFNEGEISLLLLKRNFE--PAMGEWSLMGGFVQKDE-SVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDP   86 (147)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECSSS--SSTTCEECEEEECCTTS-CHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSS
T ss_pred             ceEEEEEEEEEeCCcCEEEEEEccCC--CCCCcEeCcEeeecCCC-CHHHHHHHHHHHHhCCcccceeeeeEecCCcccC
Confidence            34554444433456779999999865  78899999999999999 999999999999999999999999988654432 


Q ss_pred             -CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccc
Q 025996          132 -NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       132 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                       .......|++.+...   ......+|.+++.|++++++.+
T Consensus        87 ~~~~v~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~~lp~  124 (147)
T d2fb1a2          87 GERVVSIAYYALININ---EYDRELVQKHNAYWVNINELPA  124 (147)
T ss_dssp             SSCEEEEEEEEECCTT---SSCHHHHHHTTEEEEETTSCCC
T ss_pred             CCceEEEEEEEEecCC---cccCCCcchhheEEecHHhchh
Confidence             223334566665432   1234567889999999999864

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.80  E-value=1.8e-19  Score=142.81  Aligned_cols=114  Identities=21%  Similarity=0.207  Sum_probs=82.2

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCC--CCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNL--SSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~--~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      .|+.+++++ .+|  +|||++|....  ...+|.|+||||++|+|| ++.+||.||++||||+.+..+.+++.+...+..
T Consensus        13 ~a~~~vi~~-~~g--~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~~~   88 (158)
T d1sjya_          13 RAAGVVLLN-ERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETGLRVRPVKFLGAYLGRFPD   88 (158)
T ss_dssp             EEEEEEEBC-TTC--CEEEEEESCC----CCCCCEECSEEECCTTS-CHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTT
T ss_pred             eEEEEEEEe-CCC--EEEEEEEecCCCCCCCCCcEECCceecCCCC-CHHHHHHHHHHHHhCccceeeEEEEEEEEECCC
Confidence            445555565 456  79999998653  346799999999999999 999999999999999999888888876543322


Q ss_pred             -CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          132 -NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       132 -~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                       .....+.|++......... ..+.+|+.++.|++++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~l  129 (158)
T d1sjya_          89 GVLILRHVWLAEPEPGQTLA-PAFTDEIAEASFVSREDFAQL  129 (158)
T ss_dssp             SCEEEEEEEEEEECSSCCCC-CCCCSSEEEEEEECHHHHHHH
T ss_pred             CCEEEEEEEEEEEcCCcccC-CCCCcceEEEEEEEHHHHhhh
Confidence             2334445555555432222 233479999999999998753

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.5e-19  Score=140.97  Aligned_cols=112  Identities=20%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccC
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTK  131 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~  131 (245)
                      .+.++++++..  +|  +|||++|...  .+.|.|++|||++|.|| |+.+||+||++|||||++..+.+++.+...+..
T Consensus         4 ~r~~~~v~i~~--~~--~vLL~~r~~~--~~~g~W~lPGG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   76 (156)
T d1irya_           4 SRLYTLVLVLQ--PQ--RVLLGMKKRG--FGAGRWNGFGGKVQEGE-TIEDGARRELQEESGLTVDALHKVGQIVFEFVG   76 (156)
T ss_dssp             CEEEEEECEEC--SS--EEEEEEESSS--SSBTCEECBCCBCCTTC-CHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETT
T ss_pred             cEEEEEEEEEE--CC--EEEEEEecCC--CCCCEEECcEeEecCCC-CHHHHHHHHHHHHHCCcccceEEEEEEEEEcCC
Confidence            34555555553  45  8999999764  67899999999999999 999999999999999999888888876554433


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          132 NGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       132 ~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .......+++....   ....+.+.|..++.|++++++....
T Consensus        77 ~~~~~~~~~~~~~~---~~~~~~~~ee~~~~W~~~~~l~~~~  115 (156)
T d1irya_          77 EPELMDVHVFCTDS---IQGTPVESDEMRPCWFQLDQIPFKD  115 (156)
T ss_dssp             CSCEEEEEEECCCC---BCSCCCCCSSEEEEEEETTCCCSTT
T ss_pred             CCEEEEEEEEEEEe---ecCcccCCchhheEEeEHHHCCcCC
Confidence            33333333333322   1223344555778999999987654

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.79  E-value=1.3e-19  Score=141.62  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=81.0

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      +.+|++++.+  +|  ++||++|...  ...|.|+||||++|.|| |+.+||+||++||||+.+.....++.........
T Consensus         3 ~v~va~ii~~--~~--k~Llv~r~~~--~~~~~w~~PgG~ve~gE-t~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   75 (146)
T d2b0va1           3 NVTVAAVIEQ--DD--KYLLVEEIPR--GTAIKLNQPAGHLEPGE-SIIQACSREVLEETGHSFLPEVLTGIYHWTCASN   75 (146)
T ss_dssp             EEEEEEECEE--TT--EEEEEEECSS--SSCCEEECSEEECCTTS-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred             eEEEEEEEEe--CC--EEEEEEEecC--CCCCEEECCeeeECCCC-CHHHHHHHHHHHhheeecccceEEEEEEEecCCC
Confidence            3556554443  46  8999999876  56789999999999999 9999999999999999988777777665544333


Q ss_pred             ce--EEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          133 GI--IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       133 ~~--~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      +.  ..+.|++.+....  .....++|+.++.|++++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~~  116 (146)
T d2b0va1          76 GTTYLRFTFSGQVVSFD--PDRKLDTGIVRAAWFSIDEIRAKQ  116 (146)
T ss_dssp             TEEEEEEEEEEEEEEEC--TTSCCCTTEEEEEEEEHHHHHHTG
T ss_pred             CeEEEEEEEEEEeecCC--CCCCCCcceeEEEEeeHHHHhhCc
Confidence            32  3333444443221  123455799999999999987643

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.6e-19  Score=136.27  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      .||++++.+  ++  ++||+||...   .+|.|+||||++|+|| |+++||.||++||||+.+....+++......  ..
T Consensus         4 paViv~i~~--~~--~vLL~~~~~~---~~g~w~lpGG~ve~GE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~--~~   73 (131)
T d1vk6a2           4 PCIIVAIRR--DD--SILLAQHTRH---RNGVHTVLAGFVEVGE-TLEQAVAREVMEESGIKVKNLRYVTSQPWPF--PQ   73 (131)
T ss_dssp             EEEEEEEEE--TT--EEEEEEETTT---CSSCCBCEEEECCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEET--TE
T ss_pred             cEEEEEEEe--CC--EEEEEEeccC---CCCCEecccCCCcCCC-cHHHHHHHHHHHHhCCcccceeEEEEeccCc--Cc
Confidence            466665554  34  7999998753   3589999999999999 9999999999999999988877777654322  23


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...+.|++.+..   ..+.+++.|+.++.|++++++...
T Consensus        74 ~~~~~f~~~~~~---~~~~~~~~E~~~~~W~~~~el~~l  109 (131)
T d1vk6a2          74 SLMTAFMAEYDS---GDIVIDPKELLEANWYRYDDLPLL  109 (131)
T ss_dssp             EEEEEEEEEEEE---CCCCCCTTTEEEEEEEETTSCCSC
T ss_pred             eEEEEEEEEEcC---CcccCCCccEEEEEEEcHHHHhhC
Confidence            445556666543   234678899999999999998653

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.75  E-value=2.4e-18  Score=137.90  Aligned_cols=113  Identities=20%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             CceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEe-----C
Q 025996           52 KRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTIL-----D  126 (245)
Q Consensus        52 r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l-----~  126 (245)
                      .|.+|.++|++ .++  +|||+||+..    +|.|.||||+||.|| |+++||+||++|||||.+..+......     .
T Consensus        13 yR~~Vg~vI~n-~~~--~vLL~kR~~~----~g~W~~PgG~ve~gE-t~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~   84 (165)
T d1jkna_          13 YRRNVGICLMN-NDK--KIFAASRLDI----PDAWQMPQGGIDEGE-DPRNAAIRELREETGVTSAEVIAEVPYWLTYDF   84 (165)
T ss_dssp             EEEEEEEEEEC-TTS--CEEEEEESSS----TTCEECCEECCCTTC-CHHHHHHHHHHHHTCCCSEEEEEECSSCEEEEC
T ss_pred             ccccEEEEEEe-CCC--EEEEEEEcCC----CCcccCccceEcCCC-ChhHHHHHHHHHhhccccccccccccccccccc
Confidence            35677777776 456  7999999853    589999999999999 999999999999999998655432211     0


Q ss_pred             Cc-----------ccCCceEEEEEEEEeCCC-CCCCCCC---CcccceeEEEEcccccccc
Q 025996          127 PI-----------FTKNGIIVVPVIGILPDR-NSFIPAP---NTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       127 ~~-----------~~~~~~~v~~~v~~~~~~-~~~~~~~---~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..           ........+.|++.+... ....+..   ...|++++.|++++++.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~  145 (165)
T d1jkna_          85 PPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDL  145 (165)
T ss_dssp             CHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHH
T ss_pred             cceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHh
Confidence            00           011122333444444322 1111111   2348999999999999864

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.75  E-value=5e-18  Score=130.78  Aligned_cols=110  Identities=21%  Similarity=0.129  Sum_probs=77.4

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc---c
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF---T  130 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~---~  130 (245)
                      +|.+|++.. .+++.++||++|+..    +|.|+||||++|.|| ++.+||+||++||||+++..+..+.......   .
T Consensus         4 aag~vv~~~-~~~~~~~Ll~~r~~~----~g~W~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   77 (137)
T d1ktga_           4 AAGLVIYRK-LAGKIEFLLLQASYP----PHHWTPPKGHVDPGE-DEWQAAIRETKEEANITKEQLTIHEDCHETLFYEA   77 (137)
T ss_dssp             EEEEEEEEE-ETTEEEEEEEEESST----TCCEESSEEECCTTC-CHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEE-cCCCEEEEEEEEcCC----CCcEeCcccccccCC-CHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCC
Confidence            444444443 467788999999754    489999999999999 9999999999999999988777654432221   1


Q ss_pred             CC-ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 KN-GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 ~~-~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .. ...+..|++.....  ....++ +|+.++.|++++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~--~~~~~~-~E~~~~~W~~~~e~~~~  117 (137)
T d1ktga_          78 KGKPKSVKYWLAKLNNP--DDVQLS-HEHQNWKWCELEDAIKI  117 (137)
T ss_dssp             TTEEEEEEEEEEEECSC--CCCCCC-TTEEEEEEECHHHHHHH
T ss_pred             CcceEEEEEEEEEecCC--CCcCCC-cceEEEEEEEHHHHHHh
Confidence            11 22334444444432  233444 68999999999998764

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.75  E-value=3.7e-18  Score=135.30  Aligned_cols=105  Identities=19%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             EEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC-ceEEEE
Q 025996           60 LFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN-GIIVVP  138 (245)
Q Consensus        60 l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~-~~~v~~  138 (245)
                      +++.+++  +|||++|+... .+.|.|+||||++|+|| |+.+||+||++|||||.+....+++......... ...+..
T Consensus        15 i~~~~~~--~lLl~~R~~~~-~~~~~w~~PGG~ve~gE-s~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   90 (155)
T d2b06a1          15 IEDLETQ--RVVMQYRAPEN-NRWSGYAFPGGHVENDE-AFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIVIC   90 (155)
T ss_dssp             EEETTTT--EEEEEEEC------CCEEECCCCBCCTTS-CHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCC--EEEEEEECCCC-CCCCcEECceeEEcCCC-CHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCCeEEEEE
Confidence            4453444  89999998774 44466999999999999 9999999999999999998888877665443322 233333


Q ss_pred             EEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          139 VIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       139 ~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      |.+...     ...+.+.|+.++.|+++++|.+..
T Consensus        91 ~~~~~~-----~~~~~~~e~~~~~W~~~~el~~l~  120 (155)
T d2b06a1          91 YKATEF-----SGTLQSSEEGEVSWVQKDQIPNLN  120 (155)
T ss_dssp             EEECEE-----EECCCCBTTBEEEEEEGGGGGGSC
T ss_pred             EEEEec-----CCccCCCchheEEEEEHHHhccCC
Confidence            333211     123456788999999999997743

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=8.1e-18  Score=133.55  Aligned_cols=115  Identities=14%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCc--ceEEEEeCCcc-
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSL--VNVVTILDPIF-  129 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~--~~~lg~l~~~~-  129 (245)
                      ..+|.+++.+ .+|  +|||+||+..  +++|.|++|||++++|| |+.+||+||++|||||++..  +..++.....+ 
T Consensus        18 ~~~v~~vi~~-~~~--~vLL~kR~~~--~~~g~W~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   91 (160)
T d1ryaa_          18 LVSLDFIVEN-SRG--EFLLGKRTNR--PAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD   91 (160)
T ss_dssp             EEEEEEEEEC-TTS--CEEEEEECSS--SSTTSEECCEEECCTTC-CHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEES
T ss_pred             EEEEEEEEEe-CCC--eEEEEEeCCC--CCCCcEecccccccCCC-cHHHHHHHHHHHHhCceEeeeeeeEEEEEEEecc
Confidence            3567666666 456  7999999865  68899999999999999 99999999999999998754  34444433221 


Q ss_pred             ---c--CCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccCC
Q 025996          130 ---T--KNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDEN  174 (245)
Q Consensus       130 ---~--~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~~  174 (245)
                         .  ........+++..... ........+|+.++.|++++++.+...
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~e~~W~~~~el~~~~~  140 (160)
T d1ryaa_          92 DNFSGTDFTTHYVVLGFRFRVS-EEELLLPDEQHDDYRWLTSDALLASDN  140 (160)
T ss_dssp             SBTTBSSSCEEEEEEEEEEECC-GGGCCCCSSSEEEEEEECHHHHHHCTT
T ss_pred             ccccCCCcceEEEEEEEEEEec-CCCccCCCcceEEEEEEEHHHhhcCcc
Confidence               1  1112222222222221 222344568999999999999987554

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=5.2e-18  Score=130.01  Aligned_cols=104  Identities=16%  Similarity=0.041  Sum_probs=75.0

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC-
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN-  132 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~-  132 (245)
                      .+|.+++++ .++  +||++||..      |.|+||||++|.|| |+.+||+||++|||||++..+..++......... 
T Consensus         3 v~agavv~~-~~~--~vLl~~~~~------g~w~~PgG~ve~gE-t~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~   72 (126)
T d1vcda1           3 LGAGGVVFN-AKR--EVLLLRDRM------GFWVFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGV   72 (126)
T ss_dssp             EEEEEEEEC-TTS--CEEEEECTT------SCEECCEECCCTTC-CHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSC
T ss_pred             EEEEEEEEE-CCC--EEEEEEcCC------CCEECCccccCCCC-CHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCe
Confidence            455555666 355  788888642      68999999999999 9999999999999999988777777654433322 


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...++.|++.....    ..+ .+|+.++.|++++++.+.
T Consensus        73 ~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~e~~~~  107 (126)
T d1vcda1          73 EREVHWFLMRGEGA----PRL-EEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             EEEEEEEEEEEESC----CCC-CTTCCEEEEECHHHHHHH
T ss_pred             EEEEEEEEEEEcCC----CCC-CccceEEEEEEHHHHhhc
Confidence            23444455544321    223 368899999999998764

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-18  Score=133.87  Aligned_cols=113  Identities=22%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CCCceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           50 TKKRAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        50 ~~r~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      +.|+.|.+|++..  +++..+||.+|..    ++|.|+||||++|+|| |+++||+||++|||||.+....+++......
T Consensus         9 ~~r~~a~~vv~~~--~~~~~~lL~~~~~----~~~~W~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (135)
T d2fvva1           9 GYKKRAACLCFRS--ESEEEVLLVSSSR----HPDRWIVPGGGMEPEE-EPSVAAVREVCEEAGVKGTLGRLVGIFENQE   81 (135)
T ss_dssp             SCEEEEEEEEESS--TTCCEEEEEECSS----CTTSEECSEEECCTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEEEETT
T ss_pred             CCceEEEEEEEEe--cCCCEEEEEEEeC----CCCcEECCccccCCCC-CHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Confidence            4555555554433  2333666766654    3689999999999999 9999999999999999988877777765544


Q ss_pred             cCCceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          130 TKNGIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~~~~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ......++.+.+....  .. .....+|+.++.|++++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~--~~-~~~~~~e~~~~~W~~~~e~~~~  121 (135)
T d2fvva1          82 RKHRTYVYVLIVTEVL--ED-WEDSVNIGRKREWFKIEDAIKV  121 (135)
T ss_dssp             TTEEEEEEEEEEEEEC--SS-CHHHHHHCCCEEEEEHHHHHHH
T ss_pred             CCccEEEEEEEEEeec--CC-CCCCCCceeEEEEEEHHHHHHH
Confidence            4333333333332221  11 1234578889999999998764

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.73  E-value=2.3e-17  Score=136.80  Aligned_cols=104  Identities=22%  Similarity=0.296  Sum_probs=75.8

Q ss_pred             EcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCc--ceEEEEeCCcc-cCCceEE-E
Q 025996           62 EGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSL--VNVVTILDPIF-TKNGIIV-V  137 (245)
Q Consensus        62 ~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~--~~~lg~l~~~~-~~~~~~v-~  137 (245)
                      +..++.++|||+||+..  ++.|.|+||||++|.|| |+.+||+||++||||+.+..  +..++.+.... ...+..+ .
T Consensus        48 ~~~~~~l~VLLv~R~~~--p~~g~W~lPGG~ve~gE-s~~eaa~REl~EEtGl~~~~~~l~~~~~~~~~~r~~~~~~i~~  124 (202)
T d2fmla2          48 NKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNE-STEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTV  124 (202)
T ss_dssp             ETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTS-CHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEE
T ss_pred             ecCCCeeEEEEEEecCC--CCCCcEECCEEeecCCC-CHHHHhhhhhHhhcCeeeecceeeeeeecccCCccccceEEEE
Confidence            43446789999999865  78899999999999999 99999999999999998764  44455554332 2223333 3


Q ss_pred             EEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          138 PVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       138 ~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .|.+.+...   .. ...+|+.++.|+|++++...
T Consensus       125 ~~~~~~~~~---~~-~~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         125 SYLAFIGEE---PL-IAGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             EEEEECCCC---CC-CCCTTEEEEEEEEEEEETTE
T ss_pred             EEEEEeCCC---Cc-CCCcceeeEEEEeHHHCcch
Confidence            455554432   12 34589999999999998764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.72  E-value=6.7e-18  Score=133.20  Aligned_cols=107  Identities=20%  Similarity=0.097  Sum_probs=65.0

Q ss_pred             EEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCceEEE
Q 025996           58 VCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGIIVV  137 (245)
Q Consensus        58 v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~v~  137 (245)
                      +++++.+.+  +|||+||...    .|.|+||||++|.|| |+.+||+||++|||||++............. .....++
T Consensus         7 aii~~~~~~--kvLLvk~~~~----~~~W~lPgG~ie~gE-s~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~-~~~~~~~   78 (151)
T d2a6ta2           7 AIMLDMSMQ--QCVLVKGWKA----SSGWGFPKGKIDKDE-SDVDCAIREVYEETGFDCSSRINPNEFIDMT-IRGQNVR   78 (151)
T ss_dssp             EEEBCSSSS--EEEEEEESST----TCCCBCSEEECCTTC-CHHHHHHHHHHHHHCCCCTTTCCTTCEEEEE-ETTEEEE
T ss_pred             EEEEECCCC--EEEEEEEeCC----CCCEECCcccccCCC-CHHHHHHHHHHHHhCCCceeeeecceEEeec-ccCceEE
Confidence            344553223  7999998643    478999999999999 9999999999999999876543221111111 1122233


Q ss_pred             EEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          138 PVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       138 ~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .|++............+.+|++++.|+++++|.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~  113 (151)
T d2a6ta2          79 LYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF  113 (151)
T ss_dssp             EEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred             EEEEEEeccCCcccccCCCccceEEEEEHHHhhhh
Confidence            33333222111111234579999999999998764

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1e-17  Score=133.81  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=73.8

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI  134 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  134 (245)
                      +|+|++++  +|  ++||+++.+. ....+.|+||||++|+|| ++++||+||++||||+... +..++.+.........
T Consensus        26 aV~vl~~~--~~--~vlLv~q~R~-~~~~~~~elP~G~ve~gE-~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g~~~~   98 (158)
T d1v8ya_          26 AVAVIALR--EG--RMLFVRQMRP-AVGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGLSGD-LTYLFSYFVSPGFTDE   98 (158)
T ss_dssp             EEEEEEEE--TT--EEEEEECCBT-TTTBCCBBCSEEECCTTC-CHHHHHHHHHHHHHSEEEE-EEEEEEEESCTTTBCC
T ss_pred             EEEEEEEE--CC--EEEEEEeeec-CCCCceEecchhhccccC-CHHHHHHHHHHhhcCCcce-eeeecceecCCCcceE
Confidence            55555554  45  7899886543 245578999999999999 9999999999999999763 5566665444444455


Q ss_pred             EEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          135 IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       135 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .++.|++.....  ....++++|+.++.|+|++++.+.
T Consensus        99 ~~~~f~a~~~~~--~~~~~d~~E~~ev~w~~~~e~~~~  134 (158)
T d1v8ya_          99 KTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALER  134 (158)
T ss_dssp             EEEEEEEEEEEE--CC--------CEEEEECHHHHHHH
T ss_pred             EEEEEEEccccc--cccCCCCCeeEEEEEEEHHHHHHH
Confidence            667777654432  234567789999999999998764

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.1e-17  Score=135.33  Aligned_cols=112  Identities=18%  Similarity=0.127  Sum_probs=82.9

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCC
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKN  132 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~  132 (245)
                      ..+|+|+...  ++  +|+|+++.+. ......|+||||++|+|| ++++||+||++||||+.+..+.+++.+....+..
T Consensus        48 ~~~v~vi~~~--~~--~vlLvrq~R~-~~~~~~~elP~G~ie~gE-~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~  121 (186)
T d1vhza_          48 REAVMIVPIV--DD--HLILIREYAV-GTESYELGFSKGLIDPGE-SVYEAANRELKEEVGFGANDLTFLKKLSMAPSYF  121 (186)
T ss_dssp             CCEEEEEEEE--TT--EEEEEEEEET-TTTEEEEECEEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTC
T ss_pred             CcEEEEEEcc--CC--EEEEEEeeec-CCCceEeecccccCCCCc-CHHHHHHHHHHHHhccccccceecceeecccccc
Confidence            3455444443  34  6788875433 245568999999999999 9999999999999999999999999886655555


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          133 GIIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       133 ~~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...++.|++.....  ....++++|+.++.|+|++++.+.
T Consensus       122 ~~~~~~~~a~~~~~--~~~~~de~E~~~~~~~~~~e~~~~  159 (186)
T d1vhza_         122 SSKMNIVVAQDLYP--ESLEGDEPEPLPQVRWPLAHMMDL  159 (186)
T ss_dssp             CCEEEEEEEEEEEE--CCCCCCCSSCCCEEEEEGGGGGGG
T ss_pred             ceEEEEEEEEeccc--ccCCCCCCcEEEEEEEeHHHHHHH
Confidence            55666676654322  223467789999999999998764

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=3.2e-17  Score=135.94  Aligned_cols=114  Identities=18%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecC-CCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCc
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKRE-ENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNG  133 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve-~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  133 (245)
                      +|+|+.++ +++  +|||+++.+. ......|+||||++| +|| ++++||+||++||||+....+++++.+....+...
T Consensus        40 ~V~vl~~~-~~~--~ilLvrq~R~-~~~~~~welPaG~ie~~gE-~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~  114 (202)
T d1mqea_          40 AVAIVAMD-DNG--NIPMVYQYRH-TYGRRLWELPAGLLDVAGE-PPHLTAARELREEVGLQASTWQVLVDLDTAPGFSD  114 (202)
T ss_dssp             EEEEEECC-TTS--EEEEEEEEET-TTTEEEEECCEEECCSTTC-CHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBC
T ss_pred             eEEEEEEC-CCC--EEEEEEeccc-ccCceEEeccccccccCCC-CHHHHHHHHHhhccccccccceEeeeeeccCccCC
Confidence            55555555 355  7888876433 234457999999999 799 99999999999999999999999999877666566


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          134 IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       134 ~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      ..++.|++............+.+|..++.|+|++++.+.-
T Consensus       115 ~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i  154 (202)
T d1mqea_         115 ESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRV  154 (202)
T ss_dssp             CCEEEEEEEEEEECCC----------CEEEEEHHHHHHHH
T ss_pred             cEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHH
Confidence            6667777654321111112233456689999999998753

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.3e-16  Score=121.15  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=73.3

Q ss_pred             CCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc----cCCceEEEEEE
Q 025996           65 DGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF----TKNGIIVVPVI  140 (245)
Q Consensus        65 ~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~----~~~~~~v~~~v  140 (245)
                      +++.++||++|+...    +.|.||||+++.|| |+.+||.||++||||+....+.+++.+....    .........|+
T Consensus        26 ~~~~~~LL~~~~~~~----~~W~lPgG~ie~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (153)
T d1xsba_          26 NNAIEFLLLQASDGI----HHWTPPKGHVEPGE-DDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWL  100 (153)
T ss_dssp             STTEEEEEEEESSTT----CCEECCEEECCSSS-CHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEEESSSCEEEEEEEE
T ss_pred             CCCCEEEEEEecCCC----CcEECCeeecCCCC-CHHHHHHHHHHHHhCCccceeeeeccceeeecccccCceeEEEEEE
Confidence            456799999998752    57999999999999 9999999999999999998777655432211    11223334444


Q ss_pred             EEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          141 GILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       141 ~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      +..... .....+ .+|+.++.|++++++.+..
T Consensus       101 ~~~~~~-~~~~~~-~~E~~~~~W~~~~e~~~~~  131 (153)
T d1xsba_         101 AEVKDY-DVEIRL-SHEHQAYRWLGLEEACQLA  131 (153)
T ss_dssp             EEESCT-TCCCCC-CTTEEEEEEECHHHHHHHT
T ss_pred             EEEeec-ccccCC-CcceeEEEEEEHHHHHHhc
Confidence            544432 222333 4789999999999988753

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.64  E-value=1.2e-16  Score=124.77  Aligned_cols=107  Identities=16%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             ceEEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc--
Q 025996           53 RAAVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT--  130 (245)
Q Consensus        53 ~aaV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~--  130 (245)
                      +.++.++|++..+.  .+|++++.      .|.|+||||++|+|| |+.+||+||++|||||+.....+++.+.....  
T Consensus        17 r~~~~~vi~~~~~~--~lll~~~~------~~~w~lPgG~ie~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   87 (147)
T d2azwa1          17 RYAAYIIVSKPENN--TMVLVQAP------NGAYFLPGGEIEGTE-TKEEAIHREVLEELGISVEIGCYLGEADEYFYSN   87 (147)
T ss_dssp             CCEEEEECEEGGGT--EEEEEECT------TSCEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEET
T ss_pred             CCeEEEEEEECCCC--EEEEEEcC------CCeEECcEeEeCCCC-CHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeec
Confidence            34555556664333  56666643      268999999999999 99999999999999999887777766643321  


Q ss_pred             CCc----eEEEEEEEEeCCCCCCCCCCCcccceeEEEEcccccccc
Q 025996          131 KNG----IIVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       131 ~~~----~~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ...    ...+.|.+....   .. ....+|+.++.|++++++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~e~~~~~W~~~~e~~~~  129 (147)
T d2azwa1          88 HRQTAYYNPGYFYVANTWR---QL-SEPLERTNTLHWVAPEEAVRL  129 (147)
T ss_dssp             TTTEEEEEEEEEEEEEEEE---EC-SSCC-CCSEEEEECHHHHHHH
T ss_pred             cCCceEEEEEEEEEEEecc---cc-CCCCccceEEEEEEHHHHHHH
Confidence            111    122223332221   11 233468899999999998653

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.63  E-value=1.3e-16  Score=124.41  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCccc---CCceEEEEEEEEeCC
Q 025996           69 RVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFT---KNGIIVVPVIGILPD  145 (245)
Q Consensus        69 ~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~---~~~~~v~~~v~~~~~  145 (245)
                      +|||++|..     .|.|+||||++|.|| ++.+||+||++||||+++.....+........   ........+......
T Consensus        13 kvLl~~r~~-----~~~w~lPgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (152)
T d1k2ea_          13 KVLLVKHKR-----LGVYIYPGGHVEHNE-TPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYPE   86 (152)
T ss_dssp             EEEEEECTT-----TCSEECSEEECCTTC-CHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEEEEEECSS
T ss_pred             EEEEEEEcC-----CCeEECCeeEEeCCc-cHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEEEEEEEEecCC
Confidence            899999864     378999999999999 99999999999999998765554433322211   111111111111111


Q ss_pred             CC------CCCCCCCcccceeEEEEcccccccc
Q 025996          146 RN------SFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       146 ~~------~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..      .....++.+|+.++.|+|++++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  119 (152)
T d1k2ea_          87 ETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRI  119 (152)
T ss_dssp             CEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGS
T ss_pred             CceEEEEEeEeeecCCCCcceEEEeEHHHHhhC
Confidence            00      0011235679999999999998764

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=7.7e-16  Score=128.11  Aligned_cols=116  Identities=17%  Similarity=0.059  Sum_probs=81.5

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCC----CCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNL----SSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIF  129 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~----~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~  129 (245)
                      -+|+|+++....+  +++|++.-+..    +..+..|++|+|.+|+|| ++++||.||+.||||+.+..++.++.+.+..
T Consensus        58 ~~v~vl~~~~~~~--~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE-~p~~aA~REL~EEtG~~~~~l~~l~~~~~sp  134 (209)
T d1g0sa_          58 HAAVLLPFDPVRD--EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPVLSFLASP  134 (209)
T ss_dssp             CEEEEEEEETTTT--EEEEEEEECGGGGGGSSCSEEEECEEEECCTTC-CHHHHHHHHHHHHHCCCCCCEEEEEEEESCT
T ss_pred             CEEEEEEEEecCC--eEEEEEEEeccccccCCCceEEeeceeecCCCc-CHHHHHHHHHHhhhcccccceeeccccccCC
Confidence            4444545553334  57776654321    112346899999999999 9999999999999999999999999987766


Q ss_pred             cCCceEEEEEEEEeCCCC--CCCCCCCcccceeEEEEcccccccc
Q 025996          130 TKNGIIVVPVIGILPDRN--SFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       130 ~~~~~~v~~~v~~~~~~~--~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      +.+...++.|++.+....  ......+++|..++.|+|++++.+.
T Consensus       135 g~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~  179 (209)
T d1g0sa_         135 GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  179 (209)
T ss_dssp             TTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred             cccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHH
Confidence            666778888888765321  1112346678889999999998764

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.61  E-value=4e-16  Score=119.69  Aligned_cols=106  Identities=17%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             EEEEEEEEcCCCcEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCcccCCce
Q 025996           55 AVLVCLFEGNDGDLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPIFTKNGI  134 (245)
Q Consensus        55 aV~v~l~~~~~g~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  134 (245)
                      .|++.++.+++|  ++|++||+.. +.++|+|+||||.+|.++ + .+++.||++||+|+++...+.++.+.+.++....
T Consensus         5 ~v~~~vi~~~~g--~iLl~kR~~~-~~~~GlWefP~g~~e~~~-~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~   79 (127)
T d1rrqa2           5 PLAVAVLADDEG--RVLIRKRDST-GLLANLWEFPSCETDGAD-G-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVW   79 (127)
T ss_dssp             EEEEEEEEESSS--EEEEEECCSS-STTTTCEECCEEECTTTC-C-HHHHHHTTC----CEEEECSCCEEEEEECSSEEE
T ss_pred             EEEEEEEEECCC--EEEEEECCCC-CCCCCceecccccccCCC-C-HHHHHHHhhhhcceEEEeccccccceEecCCeEE
Confidence            344444433566  8999999876 589999999999999777 6 7899999999999988777777887777777667


Q ss_pred             EEEEEEEEeCCCCCCCCCCCcccceeEEEEccccccccC
Q 025996          135 IVVPVIGILPDRNSFIPAPNTAEVDAIFDAPLEMFLKDE  173 (245)
Q Consensus       135 ~v~~~v~~~~~~~~~~~~~~~~Ev~~v~wvpl~el~~~~  173 (245)
                      .+++|.+.....        ..+..++.|+++++|.+-.
T Consensus        80 ~~~~~~~~~~~~--------~~~~~~~~Wv~~~el~~~~  110 (127)
T d1rrqa2          80 QLTVFPGRLVHG--------GPVEEPYRLAPEDELKAYA  110 (127)
T ss_dssp             EEEEEEEEEECC--------SCCCTTEEEEEGGGGGGSC
T ss_pred             EEEEEEEEECCC--------CccccceEEeeHHHHhHCC
Confidence            777777765432        1234568899999997643

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=9.6e-14  Score=113.49  Aligned_cols=115  Identities=16%  Similarity=0.097  Sum_probs=78.1

Q ss_pred             eEEEEEEEEcCCCcEEEEEEEeCCCC-----CCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcceEEEEeCCc
Q 025996           54 AAVLVCLFEGNDGDLRVFLTKRSSNL-----SSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVNVVTILDPI  128 (245)
Q Consensus        54 aaV~v~l~~~~~g~~~vLL~rR~~~~-----~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~~lg~l~~~  128 (245)
                      -||+|++++..++  +|+|++.-+..     ....-.|++|||.+| +| ++++||+||+.||||+.+..+..++.+...
T Consensus        44 ~aV~Vl~~~~~~~--~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e-~p~~aA~REL~EEtG~~~~~~~~lg~~~~s  119 (189)
T d1viua_          44 NGATILLYNTKKK--TVVLIRQFRVATWVNGNESGQLIESCAGLLD-ND-EPEVCIRKEAIEETGYEVGEVRKLFELYMS  119 (189)
T ss_dssp             CEEEEEEEETTTT--EEEEEEEECHHHHTTTCSSCEEEECEEEECT-TS-CHHHHHHHHHHHHHSCCCCCCEEEEEEESC
T ss_pred             CEEEEEEEEcCCC--EEEEEEeeccceeeccCCCcceecCcEEecC-CC-CHHHHHHHHHHHhhCCcceEEEEcceeecC
Confidence            3666666654445  67776653210     012235689999998 55 579999999999999999999999988666


Q ss_pred             ccCCceEEEEEEEEeCCCCCC-CCCCCcccceeEEEEcccccccc
Q 025996          129 FTKNGIIVVPVIGILPDRNSF-IPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       129 ~~~~~~~v~~~v~~~~~~~~~-~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      .+.+...++.|++.+...... ....+++|..++.|+|++++.+.
T Consensus       120 pG~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~  164 (189)
T d1viua_         120 PGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEM  164 (189)
T ss_dssp             TTTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHH
T ss_pred             ccccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHH
Confidence            566667888888876643221 12345678999999999998764

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.47  E-value=6.5e-14  Score=115.12  Aligned_cols=116  Identities=18%  Similarity=0.165  Sum_probs=73.8

Q ss_pred             CCCCceEEEEEEEEcCCC--------cEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcce
Q 025996           49 STKKRAAVLVCLFEGNDG--------DLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLVN  120 (245)
Q Consensus        49 ~~~r~aaV~v~l~~~~~g--------~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~~  120 (245)
                      .+.|+++.+++... +.+        +..||+++|.      .|.|+||||++|+||.++++||.||+.||||+.+..+.
T Consensus        17 ~g~r~a~~~~~~~~-~~~~~~~~~~~~~~vl~~~r~------~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~   89 (196)
T d1u20a1          17 EGYKHACHALLHAP-SQAKLFDRVPIRRVLLMMMRF------DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE   89 (196)
T ss_dssp             SSCEEEEEEEEEEE-CCCEETTTEECCEEEEEEEET------TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCC
T ss_pred             CCcceEEEEEEEcC-CCceEEEEecCCcEEEEEEec------CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEE
Confidence            46777776664443 233        2257888874      38999999999999955788999999999999876554


Q ss_pred             EEEE--eC-CcccC-CceEEEEEEEEeCCC-------CCCCCCCCcccceeEEEEccccccc
Q 025996          121 VVTI--LD-PIFTK-NGIIVVPVIGILPDR-------NSFIPAPNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       121 ~lg~--l~-~~~~~-~~~~v~~~v~~~~~~-------~~~~~~~~~~Ev~~v~wvpl~el~~  171 (245)
                      ++..  +. ..... .....+.|++.+...       ........+.|+.++.|+|+.++.+
T Consensus        90 l~~~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          90 VTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             CCGGGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             EEeeEEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            3211  11 11111 233444455544311       0112234457899999999999755

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-12  Score=113.69  Aligned_cols=99  Identities=20%  Similarity=0.067  Sum_probs=66.3

Q ss_pred             cEEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHCCCCCcc---------------------eEEEEe
Q 025996           67 DLRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIGLDPSLV---------------------NVVTIL  125 (245)
Q Consensus        67 ~~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtGl~~~~~---------------------~~lg~l  125 (245)
                      .++||+++|...     |.|+||||++|+|| ++.+||+||+.||||+.....                     .+.+.+
T Consensus       138 ~LqvLlIkR~d~-----g~WaLPGG~Vd~GE-s~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyv  211 (292)
T d1q33a_         138 ILQFVAIKRKDC-----GEWAIPGGMVDPGE-KISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYV  211 (292)
T ss_dssp             CEEEEEEECTTT-----CSEECCCEECCTTC-CHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEEC
T ss_pred             eeEEEEEEecCC-----CcEeCCcccCCCCC-CHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccc
Confidence            378999999765     79999999999999 999999999999999976432                     123333


Q ss_pred             CCcc-cCCceEE-EEEEEEeCCCCCC-CC-CCCcccceeEEEEccccccc
Q 025996          126 DPIF-TKNGIIV-VPVIGILPDRNSF-IP-APNTAEVDAIFDAPLEMFLK  171 (245)
Q Consensus       126 ~~~~-~~~~~~v-~~~v~~~~~~~~~-~~-~~~~~Ev~~v~wvpl~el~~  171 (245)
                      .... +.....+ +.|.+........ .. ....+|+.++.|++++++.+
T Consensus       212 ddprntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~  261 (292)
T d1q33a_         212 DDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLK  261 (292)
T ss_dssp             CCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCC
T ss_pred             cccCCCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhcccc
Confidence            3322 2222222 2344444322111 11 12347999999999998764

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.4e-12  Score=96.07  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=76.3

Q ss_pred             EEEEEEEeCCCCCCCCCCccCCceecCCCCCCHHHHHHHHHHHHHC--CCCCcceEEEEeCCcccCCceEEEEEEEEeCC
Q 025996           68 LRVFLTKRSSNLSSHSGEVALPGGKREENDADDAGTALREAKEEIG--LDPSLVNVVTILDPIFTKNGIIVVPVIGILPD  145 (245)
Q Consensus        68 ~~vLL~rR~~~~~~~~G~w~fPGG~ve~gE~s~~~aA~REl~EEtG--l~~~~~~~lg~l~~~~~~~~~~v~~~v~~~~~  145 (245)
                      -+|||+||+.. +.++|+|+||+|.++.+| +..++|+||..+|.+  +++.....++.+.+.++.....+++|.+.+..
T Consensus        27 ~~iLl~kR~~~-g~l~GlWefP~~~~~~~e-~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH~~~~~~v~~~~~~~  104 (142)
T d1x51a1          27 AQILLVQRPNS-GLLAGLWEFPSVTWEPSE-QLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEG  104 (142)
T ss_dssp             EEEEEEECCCC-STTCSCEECCEEECCSSH-HHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSS
T ss_pred             CEEEEEECCCC-CCCCcceeeeEeeccCCc-chhHHHHHHHHHHhccCcceeeeeeeccceeccCCcceEEEEEEEEEeC
Confidence            38999999877 689999999999999999 777777766555554  45566677888888888888888888887764


Q ss_pred             CCCCCCCCCcccceeEEEEcccccccc
Q 025996          146 RNSFIPAPNTAEVDAIFDAPLEMFLKD  172 (245)
Q Consensus       146 ~~~~~~~~~~~Ev~~v~wvpl~el~~~  172 (245)
                      ..     +...|..+..|++++++.+-
T Consensus       105 ~~-----~~~~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1         105 QT-----PVTTVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             CC-----CCCCCCTTEEEEEHHHHHHS
T ss_pred             CC-----cccccCccCEEeeHHHcccc
Confidence            31     23356778999999998764