Citrus Sinensis ID: 026002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCVDSSG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHcccHHHHHHccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHccccccccccEEEEEEcccccccHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHccccccEEEcccc
Coil and Loop (DISEMBL)
MWIWRALILLQLVNgvlgwgkegHFAICKIAEGYLTEDALAAVKELlpdsaegdlanvcswadEVRFhmrwssplhyvdtpdfmcnykycrdchdsvgrknrcvtGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFigdvhqplhvgfigdkggntiTVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNitdgwsndvsswencannqtvcpngyahsiqfplhccvdssg
Flexible Loop (DISEMBL)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRktnlhhvwdTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCVDSSG
Low Complexity Region (SEG)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCVDSSG
Disordered region (IsUnstruct)
*WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCV****
Disordered Region (DISOPRED)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQD*ISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCVD***
Disordered Region (DISEMBL)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCVDSSG
Disordered Region (DISPRO)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCVDS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCVDSSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
F4JJL0	299	Endonuclease 4 OS=Arabido	yes	no	0.934	0.765	0.679	2e-96
F4JJL3	296	Endonuclease 5 OS=Arabido	no	no	0.938	0.777	0.583	2e-80
Q8LDW6	294	Endonuclease 3 OS=Arabido	no	no	0.918	0.765	0.603	7e-80
Q9C9G4	290	Endonuclease 2 OS=Arabido	no	no	0.897	0.758	0.563	9e-71
Q9SXA6	305	Endonuclease 1 OS=Arabido	no	no	0.881	0.708	0.511	3e-63
P24021	287	Nuclease S1 OS=Aspergillu	yes	no	0.787	0.672	0.336	1e-20
P24504	270	Nuclease PA3 OS=Penicilli	N/A	no	0.726	0.659	0.350	6e-18
P24289	270	Nuclease P1 OS=Penicilliu	N/A	no	0.726	0.659	0.350	6e-18

>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1

 Score =  352 bits (902), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 192/231 (83%), Gaps = 2/231 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8   WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query: 62  ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
            DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct: 68  PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
           ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN YA
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYA 238

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: 0EC: .EC: 1

>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1

 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 136/233 (58%), Positives = 180/233 (77%), Gaps = 3/233 (1%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
           +WI   L+L  LV+G L WGK+GH+ +CK+AEG+  +D +AAVK+LLP+S +G  LA+ C
Sbjct: 3   LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query: 60  SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
           SW DE++     +W+S LHYV+TP++ CNY+YCRDCHD+   K+ CVTGAI+NYT QL S
Sbjct: 63  SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query: 118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
             ++S ++  YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY  K+NLHHVWD
Sbjct: 123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query: 178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
            MIIDSAL+TYY+S +  MIQ++Q  + +GWSNDV SW++C  +Q  CPN YA
Sbjct: 183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYA 235

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases. Endonuclease that recognizes and cleaves some mismatches with high efficiency, including heteroduplex double-stranded DNA; mostly efficient on T/G, A/G and G/G mismatches, less efficient for T/T and poorly efficient for C/C, A/A, T/C and A/C.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1

 Score =  296 bits (759), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 140/232 (60%), Positives = 172/232 (74%), Gaps = 7/232 (3%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           MWI   L+L QLVNG L WG  GH+A+CKIA+ Y  ED + AVK+LLP+SA G+LA VCS
Sbjct: 7   MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66

Query: 61  WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           W DE++     RW+S LH+ DTPD+ CNY+Y RDC      K+ CVTGAI+NYT QL S 
Sbjct: 67  WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDC-----PKDWCVTGAIFNYTNQLMST 121

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
            ++S S+  YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD 
Sbjct: 122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           MII+SAL+TYY+S +  MI  +Q  + +GWSNDV SWE+C  NQT CPN YA
Sbjct: 182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYA 233

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1

 Score =  266 bits (680), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 125/222 (56%), Positives = 158/222 (71%), Gaps = 2/222 (0%)

Query: 9   LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
           LL     + GWGKEGH  ICKIA+  L E A  AVKELLP+SAEGDL+++C WAD V+F 
Sbjct: 18  LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77

Query: 69  MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
             WSSPLHY++TPD  C+Y+Y RDC D  G K RCV GAIYNYT QL S    + S  +Y
Sbjct: 78  YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136

Query: 129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
           NLTEAL+F+SHF+GD+HQPLHV +  DKGGNTI V WY RK NLHH+WD+ II++A    
Sbjct: 137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196

Query: 189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           Y+S +  M+ ++++NIT  W++ V  WE C   +T CP+ YA
Sbjct: 197 YNSALEGMVDALKKNITTEWADQVKRWETC-TKKTACPDIYA 237

Probable endonuclease (By similarity). Can not hydrolyze single stranded DNA and does not cleave mismatches.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/221 (51%), Positives = 155/221 (70%), Gaps = 5/221 (2%)

Query: 13  VNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMR 70
           V+ V  W KEGH   C+IA+  L       V+ LLPD  +GDL+ +C W D++R  +  R
Sbjct: 23  VSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYR 82

Query: 71  WSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNL 130
           W+S LHY+DTPD  C+Y+Y RDCHD  G K+ CV GAI N+T QL+  Y +  S  +YN+
Sbjct: 83  WTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTSDRRYNM 141

Query: 131 TEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYD 190
           TEAL+FLSHF+GD+HQP+HVGF  D+GGNTI +RWY+ K+NLHHVWD  II +ALK  YD
Sbjct: 142 TEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYD 201

Query: 191 SDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYA 230
            ++ ++ + +++NIT+G W +D+SSW  C N+   CP+ YA
Sbjct: 202 KNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPHKYA 241

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases during senescence. Endonuclease that recognizes and cleaves all types of mismatches with high efficiency, including heteroduplex double-stranded DNA. Maybe involved in programmed cell death (PCD) and senescence.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nucS PE=1 SV=2

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 102/217 (47%), Gaps = 24/217 (11%)

Query: 10  LQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF-- 67
           L L     GWG  GH  +  IA+ ++     +  + +L D +   LANV +WAD  ++  
Sbjct: 12  LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71

Query: 68  HMRWSSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
              +S P H++D    P   C   Y RDC  S G    C   AI NYT         +I 
Sbjct: 72  AGEFSKPYHFIDAQDNPPQSCGVDYDRDCG-SAG----CSISAIQNYT---------NIL 117

Query: 125 VEKYNLTE---ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMII 181
           +E  N +E   AL F+ H IGD+HQPLH   + + GGN I V +    TNLHH+WDT + 
Sbjct: 118 LESPNGSEALNALKFVVHIIGDIHQPLHDENL-EAGGNGIDVTYDGETTNLHHIWDTNMP 176

Query: 182 DSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWEN 217
           + A   Y  S        +   I  G +S+   SW +
Sbjct: 177 EEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTD 213

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG 207
               +++ +NI  G
Sbjct: 170 ESWAKTLVQNIESG 183

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium sp (taxid: 5081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 6

>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG 207
               +++ +NI  G
Sbjct: 170 ESWAKTLVQNIESG 183

Hydrolyzes only single stranded DNA and RNA without apparent specificity for bases.

Penicillium citrinum (taxid: 5077)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
224116204	297	predicted protein [Populus trichocarpa]	0.938	0.774	0.765	1e-103
225469300	323	PREDICTED: nuclease S1 [Vitis vinifera]	0.938	0.712	0.758	1e-102
296080968	332	unnamed protein product [Vitis vinifera]	0.938	0.692	0.758	1e-102
255560824	298	Nuclease PA3, putative [Ricinus communis	0.938	0.771	0.747	1e-101
379046752	309	PARS II endonuclease [Petroselinum crisp	0.938	0.744	0.730	4e-98
357475823	383	Nuclease S1 [Medicago truncatula] gi|355	0.881	0.563	0.747	9e-97
297803994	299	hypothetical protein ARALYDRAFT_492719 [	0.938	0.769	0.681	1e-95
403220385	310	endonuclease [Apium graveolens]	0.938	0.741	0.708	2e-95
22328857	299	endonuclease 4 [Arabidopsis thaliana] gi	0.934	0.765	0.679	9e-95
449492775	299	PREDICTED: endonuclease 4-like [Cucumis	0.934	0.765	0.701	2e-92

>gi|224116204|ref|XP_002317238.1| predicted protein [Populus trichocarpa] gi|222860303|gb|EEE97850.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/230 (76%), Positives = 196/230 (85%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W  RAL+LLQ V G+LGWGKEGH+A CKIAEGYLT +ALAAVKELLP+SAEGDLANVCS
Sbjct: 7   LWAVRALVLLQFVTGILGWGKEGHYATCKIAEGYLTAEALAAVKELLPESAEGDLANVCS 66

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           W DE+RFH  WSS LHYVDTPDF CNY+Y RDCHDS GRK+RCVTGAIYNYT QL S YQ
Sbjct: 67  WPDEIRFHYHWSSALHYVDTPDFRCNYEYFRDCHDSSGRKDRCVTGAIYNYTNQLLSLYQ 126

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           +S S   YNLTEALMFLSHFIGDVHQPLHVGF+GD GGNTI V WYRRK+NLHHVWD MI
Sbjct: 127 NSNSESNYNLTEALMFLSHFIGDVHQPLHVGFLGDLGGNTIQVHWYRRKSNLHHVWDNMI 186

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           I+SALKT+Y SD+A MI++IQ NIT+ WSN    WE+CA+N TVCPN YA
Sbjct: 187 IESALKTFYSSDLATMIRAIQNNITENWSNQQPLWEHCAHNHTVCPNPYA 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469300|ref|XP_002269258.1| PREDICTED: nuclease S1 [Vitis vinifera]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/232 (75%), Positives = 200/232 (86%), Gaps = 2/232 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           + I RAL+LLQL+ G+L WGKEGH+A+CKIAEG+L+EDAL AVK LLPD AEGDLA VCS
Sbjct: 7   LLIVRALVLLQLIPGILSWGKEGHYAVCKIAEGFLSEDALGAVKALLPDYAEGDLAAVCS 66

Query: 61  WADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           WADE+R  FH RWS PLHYVDTPD+ CNY+YCRDCHD  G K+ CVTGAIYNYT QL SG
Sbjct: 67  WADEIRHNFHWRWSGPLHYVDTPDYRCNYEYCRDCHDFRGHKDICVTGAIYNYTKQLTSG 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
           Y +S S  +YNLTEALMFLSHFIGDVHQPLHVGF GD+GGNTI VRWYRRKTNLHH+WD 
Sbjct: 127 YHNSGSEIRYNLTEALMFLSHFIGDVHQPLHVGFTGDEGGNTIIVRWYRRKTNLHHIWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           MIIDSALKTYY+SD+A+MIQ+IQRNIT  WS D+SSW+NCA++ T CPN YA
Sbjct: 187 MIIDSALKTYYNSDLAIMIQAIQRNITGDWSFDISSWKNCASDDTACPNLYA 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080968|emb|CBI18600.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/232 (75%), Positives = 200/232 (86%), Gaps = 2/232 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           + I RAL+LLQL+ G+L WGKEGH+A+CKIAEG+L+EDAL AVK LLPD AEGDLA VCS
Sbjct: 7   LLIVRALVLLQLIPGILSWGKEGHYAVCKIAEGFLSEDALGAVKALLPDYAEGDLAAVCS 66

Query: 61  WADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           WADE+R  FH RWS PLHYVDTPD+ CNY+YCRDCHD  G K+ CVTGAIYNYT QL SG
Sbjct: 67  WADEIRHNFHWRWSGPLHYVDTPDYRCNYEYCRDCHDFRGHKDICVTGAIYNYTKQLTSG 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
           Y +S S  +YNLTEALMFLSHFIGDVHQPLHVGF GD+GGNTI VRWYRRKTNLHH+WD 
Sbjct: 127 YHNSGSEIRYNLTEALMFLSHFIGDVHQPLHVGFTGDEGGNTIIVRWYRRKTNLHHIWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           MIIDSALKTYY+SD+A+MIQ+IQRNIT  WS D+SSW+NCA++ T CPN YA
Sbjct: 187 MIIDSALKTYYNSDLAIMIQAIQRNITGDWSFDISSWKNCASDDTACPNLYA 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560824|ref|XP_002521425.1| Nuclease PA3, putative [Ricinus communis] gi|223539324|gb|EEF40915.1| Nuclease PA3, putative [Ricinus communis]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/230 (74%), Positives = 192/230 (83%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W+ R L+LLQ V+G+LGWGKEGH+A CKIAEGYLTEDALAAVK LLPDSAEGD A VC 
Sbjct: 8   LWVGRVLVLLQFVSGILGWGKEGHYATCKIAEGYLTEDALAAVKYLLPDSAEGDFAAVCP 67

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WAD+VRFH  WSS LH+VDTPDF CNY+YCRDCHDS G K+RCVT AI+NYT QL S YQ
Sbjct: 68  WADQVRFHYHWSSALHFVDTPDFKCNYEYCRDCHDSAGHKDRCVTAAIFNYTNQLTSAYQ 127

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           +  S   YNLTEALMFLSHFIGDVHQPLHVGF GD GGN I V WYRRKTNLHHVWD MI
Sbjct: 128 NFNSGFNYNLTEALMFLSHFIGDVHQPLHVGFTGDLGGNRIIVHWYRRKTNLHHVWDDMI 187

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           IDSALK +Y SD+A+MIQ+IQ N+T+GWSN +  WE C NN+TVCPN YA
Sbjct: 188 IDSALKKFYGSDLAIMIQAIQNNMTEGWSNQLPLWEYCQNNRTVCPNLYA 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379046752|gb|AFC88012.1| PARS II endonuclease [Petroselinum crispum]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 168/230 (73%), Positives = 190/230 (82%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           M  + A+  L L+  V  WGKEGHFAICKIA+G+LT+DAL AVK LLP+ A+GDLA VCS
Sbjct: 3   MLTYTAIYFLLLLPSVFSWGKEGHFAICKIAQGFLTKDALTAVKALLPEYADGDLAAVCS 62

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WADEVRFHMRWSSPLHYVDTPDF CNYKYCRDCHDSVGRK+RCVTGAIYNYT QL  G  
Sbjct: 63  WADEVRFHMRWSSPLHYVDTPDFRCNYKYCRDCHDSVGRKDRCVTGAIYNYTEQLLLGVH 122

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           D  S    NLTEALMFLSHF+GDVHQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWDTM+
Sbjct: 123 DLDSKMNNNLTEALMFLSHFVGDVHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDTMM 182

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           I+S+LKT+Y+SD++ +IQSIQ NIT  W  D  SW NC  +Q  CP+ YA
Sbjct: 183 IESSLKTFYNSDLSSLIQSIQSNITGIWLTDSLSWRNCTADQVACPDPYA 232

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475823|ref|XP_003608197.1| Nuclease S1 [Medicago truncatula] gi|355509252|gb|AES90394.1| Nuclease S1 [Medicago truncatula]

 Score =  358 bits (920), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 163/218 (74%), Positives = 188/218 (86%), Gaps = 2/218 (0%)

Query: 15  GVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWS 72
            VL WGK+GH+AICKI++ YL+EDAL AVK+LLPDSA+ DLA+VCSW DE+R  +H RWS
Sbjct: 105 NVLAWGKDGHYAICKISQEYLSEDALFAVKQLLPDSAQADLASVCSWPDEIRHNYHYRWS 164

Query: 73  SPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTE 132
           SPLHY+DTPDF CNY+YCRDCHDS G K+RCVTGAIYNYTMQLK    D+ S  KYNLTE
Sbjct: 165 SPLHYIDTPDFKCNYQYCRDCHDSYGHKHRCVTGAIYNYTMQLKLANADASSELKYNLTE 224

Query: 133 ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSD 192
           ALMFLSHF+GDVHQPLHVGF GD GGN+ITVRWYRRKTNLHHVWD MII+SALK +Y SD
Sbjct: 225 ALMFLSHFVGDVHQPLHVGFTGDLGGNSITVRWYRRKTNLHHVWDNMIIESALKKFYGSD 284

Query: 193 IAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           ++ MIQ+IQRNI+D WSNDVS WE+CA+N T CP+ YA
Sbjct: 285 LSTMIQAIQRNISDIWSNDVSIWEHCAHNHTACPDRYA 322

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803994|ref|XP_002869881.1| hypothetical protein ARALYDRAFT_492719 [Arabidopsis lyrata subsp. lyrata] gi|297315717|gb|EFH46140.1| hypothetical protein ARALYDRAFT_492719 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 158/232 (68%), Positives = 193/232 (83%), Gaps = 2/232 (0%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           +W    L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP+SA+GDLA+VCS
Sbjct: 7   LWFATVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPESADGDLASVCS 66

Query: 61  WADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
           W DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S 
Sbjct: 67  WPDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKHQDRCVTGAIFNYTMQLMSA 126

Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
            ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD 
Sbjct: 127 SENSHTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDN 186

Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           MII+SALKTYY+  + + IQ++Q N+T GWSNDV SWE+C  NQT CPN YA
Sbjct: 187 MIIESALKTYYNKSLPLFIQALQTNLTHGWSNDVPSWESCQLNQTACPNPYA 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|403220385|dbj|BAM38525.1| endonuclease [Apium graveolens]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 189/230 (82%)

Query: 1   MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
           M  +  +  L L+  V  WGK+GHFAICKIA+G+L++DAL AVK LLP+ A+GDLA VCS
Sbjct: 3   MLTYTGIYFLLLLPSVFCWGKQGHFAICKIAQGFLSKDALTAVKALLPEYADGDLAAVCS 62

Query: 61  WADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQ 120
           WADEVRFHMRWSSPLHYVDTPDF CNYKYCRDCHDSVGRK+RCVTGAI+NYT QL  G  
Sbjct: 63  WADEVRFHMRWSSPLHYVDTPDFRCNYKYCRDCHDSVGRKDRCVTGAIHNYTEQLLLGVH 122

Query: 121 DSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMI 180
           D  S    NLTEALMFLSHF+GDVHQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWDTM+
Sbjct: 123 DLNSKMNNNLTEALMFLSHFVGDVHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDTMM 182

Query: 181 IDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           I+S+LKT+Y+SD++ +IQ+IQ NIT  W  D  SW NC  +  VCP+ YA
Sbjct: 183 IESSLKTFYNSDLSSLIQAIQSNITGVWLTDSLSWSNCTADHVVCPDPYA 232

Source: Apium graveolens

Species: Apium graveolens

Genus: Apium

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328857|ref|NP_680734.1| endonuclease 4 [Arabidopsis thaliana] gi|391359266|sp|F4JJL0.1|ENDO4_ARATH RecName: Full=Endonuclease 4; Short=AtENDO4; AltName: Full=Deoxyribonuclease ENDO4; AltName: Full=Single-stranded-nucleate endonuclease ENDO4; Flags: Precursor gi|332659076|gb|AEE84476.1| endonuclease 4 [Arabidopsis thaliana]

 Score =  352 bits (902), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 192/231 (83%), Gaps = 2/231 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8   WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query: 62  ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
            DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct: 68  PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
           ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN YA
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYA 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492775|ref|XP_004159097.1| PREDICTED: endonuclease 4-like [Cucumis sativus]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 162/231 (70%), Positives = 182/231 (78%), Gaps = 2/231 (0%)

Query: 2   WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
           W   A + L L+ G+LGWG+EGH+ ICKIAE YLTEDAL+ VKELLP  AEGDLA VCSW
Sbjct: 8   WTANAFVFLLLLPGILGWGREGHYMICKIAEKYLTEDALSMVKELLPSYAEGDLAAVCSW 67

Query: 62  ADEVRFH--MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
           ADE+R H    WS  LHYVDTPDF CNYK  RDCHD+   K RCVT AIYNYTMQL+S Y
Sbjct: 68  ADELRAHPDYHWSGALHYVDTPDFFCNYKCSRDCHDNYRHKGRCVTAAIYNYTMQLESAY 127

Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
            +  S  KYNLTEALMFLSHFIGDVHQPLHVGF+GD GGN I V WYRR+TNLHHVWDTM
Sbjct: 128 NEITSEIKYNLTEALMFLSHFIGDVHQPLHVGFVGDIGGNLIKVSWYRRRTNLHHVWDTM 187

Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
           IIDSALK +Y S++ +MIQ+IQ NI+D W N+VS+W NC  NQT CPN YA
Sbjct: 188 IIDSALKRFYHSNLLLMIQAIQNNISDEWHNEVSAWRNCTVNQTTCPNPYA 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:504955531	299	ENDO4 "endonuclease 4" [Arabid	0.967	0.792	0.666	1.5e-92
TAIR|locus:2119612	296	ENDO5 "endonuclease 5" [Arabid	0.971	0.804	0.574	3.3e-79
TAIR|locus:2119687	294	ENDO3 "endonuclease 3" [Arabid	0.951	0.792	0.593	4.3e-77
TAIR|locus:2199297	290	ENDO2 "AT1G68290" [Arabidopsis	0.897	0.758	0.563	2.1e-68
TAIR|locus:2202114	305	BFN1 "bifunctional nuclease i"	0.938	0.754	0.495	1.2e-63
UNIPROTKB|G5EHU9	306	MGCH7_ch7g611 "Nuclease PA3" [	0.677	0.542	0.327	3.8e-23
GENEDB_PFALCIPARUM|PF14_0117	327	PF14_0117 "hypothetical protei	0.6	0.449	0.226	0.00082
UNIPROTKB|Q8ILX6	327	PF14_0117 "Putative uncharacte	0.6	0.449	0.226	0.00082

TAIR|locus:504955531 ENDO4 "endonuclease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 160/240 (66%), Positives = 195/240 (81%)

Query:     2 WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
             W  R L+L QL+NG L WGKEGH+ +CKIAE Y  E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct:     8 WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67

Query:    62 ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
              DE++ H   RW+SPLHYVDTPD+ CNY+YCRDCHD+   ++RCVTGAI+NYTMQL S  
Sbjct:    68 PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127

Query:   120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
             ++S ++  YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct:   128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187

Query:   180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHC 239
             II+SALKTYY+  + +MI+++Q N+T+ WSNDV  WE+C  NQT CPN YA S    L C
Sbjct:   188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYA-SESINLAC 246

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2119612 ENDO5 "endonuclease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 139/242 (57%), Positives = 183/242 (75%)

Query:     1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
             +WI   L+L  LV+G L WGK+GH+ +CK+AEG+  +D +AAVK+LLP+S +G  LA+ C
Sbjct:     3 LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62

Query:    60 SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
             SW DE++     +W+S LHYV+TP++ CNY+YCRDCHD+   K+ CVTGAI+NYT QL S
Sbjct:    63 SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122

Query:   118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
               ++S ++  YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY  K+NLHHVWD
Sbjct:   123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182

Query:   178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPL 237
              MIIDSAL+TYY+S +  MIQ++Q  + +GWSNDV SW++C  +Q  CPN YA S    L
Sbjct:   183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYA-SESIDL 241

Query:   238 HC 239
              C
Sbjct:   242 AC 243

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2119687 ENDO3 "endonuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 143/241 (59%), Positives = 175/241 (72%)

Query:     1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
             MWI   L+L QLVNG L WG  GH+A+CKIA+ Y  ED + AVK+LLP+SA G+LA VCS
Sbjct:     7 MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66

Query:    61 WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
             W DE++     RW+S LH+ DTPD+ CNY+Y RDC      K+ CVTGAI+NYT QL S 
Sbjct:    67 WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDCP-----KDWCVTGAIFNYTNQLMST 121

Query:   119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
              ++S S+  YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD 
Sbjct:   122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181

Query:   179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLH 238
             MII+SAL+TYY+S +  MI  +Q  + +GWSNDV SWE+C  NQT CPN YA S    L 
Sbjct:   182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYA-SESIDLA 240

Query:   239 C 239
             C
Sbjct:   241 C 241

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=IEA;ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2199297 ENDO2 "AT1G68290" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 125/222 (56%), Positives = 158/222 (71%)

Query:     9 LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
             LL     + GWGKEGH  ICKIA+  L E A  AVKELLP+SAEGDL+++C WAD V+F 
Sbjct:    18 LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77

Query:    69 MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
               WSSPLHY++TPD  C+Y+Y RDC D  G K RCV GAIYNYT QL S    + S  +Y
Sbjct:    78 YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136

Query:   129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
             NLTEAL+F+SHF+GD+HQPLHV +  DKGGNTI V WY RK NLHH+WD+ II++A    
Sbjct:   137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196

Query:   189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYA 230
             Y+S +  M+ ++++NIT  W++ V  WE C   +T CP+ YA
Sbjct:   197 YNSALEGMVDALKKNITTEWADQVKRWETCTK-KTACPDIYA 237

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0004519 "endonuclease activity" evidence=ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

TAIR|locus:2202114 BFN1 "bifunctional nuclease i" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 117/236 (49%), Positives = 162/236 (68%)

Query:     7 LILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR 66
             +++L  V+ V  W KEGH   C+IA+  L       V+ LLPD  +GDL+ +C W D++R
Sbjct:    17 ILILCSVSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIR 76

Query:    67 --FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
               +  RW+S LHY+DTPD  C+Y+Y RDCHD  G K+ CV GAI N+T QL+  Y +  S
Sbjct:    77 HWYKYRWTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTS 135

Query:   125 VEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSA 184
               +YN+TEAL+FLSHF+GD+HQP+HVGF  D+GGNTI +RWY+ K+NLHHVWD  II +A
Sbjct:   136 DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTA 195

Query:   185 LKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYAHSIQFPLHC 239
             LK  YD ++ ++ + +++NIT+G W +D+SSW  C N+   CP+ YA S    L C
Sbjct:   196 LKENYDKNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPHKYA-SESIKLAC 249

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006308 "DNA catabolic process" evidence=ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0000014 "single-stranded DNA specific endodeoxyribonuclease activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IDA

GO:0043765 "T/G mismatch-specific endonuclease activity" evidence=IDA

GO:0080187 "floral organ senescence" evidence=IEP

UNIPROTKB|G5EHU9 MGCH7_ch7g611 "Nuclease PA3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/183 (32%), Positives = 95/183 (51%)

Query:     6 ALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEV 65
             A ++L  + G L WG  GH  +  +A  ++       ++ LL +  +  LA V +WAD +
Sbjct:     9 APLILSGLPGALAWGSLGHITVAYLASRFVAPQTETYLQRLLRNDTDAYLAGVATWADSI 68

Query:    66 RFHMRW---SSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
             R+  +W   +   H++D    P   C+    RDC D  G    CV  A+ NYT ++    
Sbjct:    69 RY-TKWGHFTGVFHFIDAKDDPPRSCSVDMDRDCKDQ-G----CVVTALQNYTSRM---- 118

Query:   120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
              D   + ++   +A  F+ HF+GD+HQPLH   +  +GGN I V W+ R+ NLH VWD+ 
Sbjct:   119 MDLDRLREWERAQAAKFVVHFVGDMHQPLHDEDVA-RGGNGIHVLWHGREYNLHSVWDSA 177

Query:   180 IID 182
             I +
Sbjct:   178 IAE 180

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF14_0117 PF14_0117 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00082
 Identities = 37/163 (22%), Positives = 68/163 (41%)

Query:     3 IWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLAN--VCS 60
             I+ +L++L       GW  EGH  +  IA  +L +D    +  +  +  E +  N  V  
Sbjct:     7 IFCSLLILIFTKRCSGWCDEGHMLVSAIAYNFLNDDEKTVLDHIFKNYKEDNDFNDPVLG 66

Query:    61 --WADEVR-FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQ--- 114
               W D ++ F+  + + +  +D  + M  + Y    ++    K        Y  T     
Sbjct:    67 SVWPDHIKYFNYNYPNKMRRIDGLELMNKWHYVNIPYNPTNIKLNMFQKEYYKRTDNAIT 126

Query:   115 -LKSGYQDSISVEK-------YNLTEALMFLSHFIGDVHQPLH 149
              LKS ++   +V+K       ++    + +  H  GD+HQPLH
Sbjct:   127 ILKSIFKSLKNVKKKENHGTFFSYNFLIRYFIHIFGDIHQPLH 169

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILX6 PF14_0117 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00082
 Identities = 37/163 (22%), Positives = 68/163 (41%)

Query:     3 IWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLAN--VCS 60
             I+ +L++L       GW  EGH  +  IA  +L +D    +  +  +  E +  N  V  
Sbjct:     7 IFCSLLILIFTKRCSGWCDEGHMLVSAIAYNFLNDDEKTVLDHIFKNYKEDNDFNDPVLG 66

Query:    61 --WADEVR-FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQ--- 114
               W D ++ F+  + + +  +D  + M  + Y    ++    K        Y  T     
Sbjct:    67 SVWPDHIKYFNYNYPNKMRRIDGLELMNKWHYVNIPYNPTNIKLNMFQKEYYKRTDNAIT 126

Query:   115 -LKSGYQDSISVEK-------YNLTEALMFLSHFIGDVHQPLH 149
              LKS ++   +V+K       ++    + +  H  GD+HQPLH
Sbjct:   127 ILKSIFKSLKNVKKKENHGTFFSYNFLIRYFIHIFGDIHQPLH 169


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       245   0.00099  113 3  11 22  0.40    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  247 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.00u 0.15s 20.15t   Elapsed:  00:00:01
  Total cpu time:  20.00u 0.15s 20.15t   Elapsed:  00:00:01
  Start:  Tue May 21 00:54:21 2013   End:  Tue May 21 00:54:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JJL0	ENDO4_ARATH	3, ., 1, ., 3, 0, ., 1	0.6796	0.9346	0.7658	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.30.1	LOW CONFIDENCE prediction!
3rd Layer	3.1.30	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XI0310 hypothetical protein (297 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam02265	251	pfam02265, S1-P1_nuclease, S1/P1 Nuclease	2e-84
cd11010	249	cd11010, S1-P1_nuclease, S1/P1 nucleases and relat	4e-62
cd10981	238	cd10981, ZnPC_S1P1, Zinc dependent phospholipase C	1e-07

>gnl|CDD|216953 pfam02265, S1-P1_nuclease, S1/P1 Nuclease

 Score =  251 bits (643), Expect = 2e-84
 Identities = 99/221 (44%), Positives = 124/221 (56%), Gaps = 21/221 (9%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WGKEGH  + +IAE +L+  A  AV+ LLP   +GDLA V +WAD++R     RW+SP H
Sbjct: 1   WGKEGHRTVAEIAERHLSPKARKAVQRLLPGL-DGDLAQVATWADDIRSDGKYRWTSPWH 59

Query: 77  YVDTPDFMCNYKYCRDCHDSV-GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           Y+DTPD        RDCHD+    K  CV  AI NYT QLK     S         EAL 
Sbjct: 60  YIDTPD----NPPPRDCHDAEDCPKEGCVVSAINNYTSQLKDTTASS-----DQRAEALK 110

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
           FL HF+GD+HQPLH G  GD+GGN I VRW+ RKTNLH VWD+ II++AL  YY S ++ 
Sbjct: 111 FLVHFVGDIHQPLHAGRAGDRGGNDIKVRWFGRKTNLHSVWDSGIIETALGDYYRSSLSE 170

Query: 196 MIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAH-SIQF 235
              +++  IT G   D              P  +A  S   
Sbjct: 171 WADALEATITFGEYKDAW-------EPGTTPLDWAEESNAL 204

This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. Length = 251

>gnl|CDD|211382 cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes

 Score =  194 bits (495), Expect = 4e-62
 Identities = 80/196 (40%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WG EGH  + +IAE YLT  A  AV  LL   +   LA   +WAD++R     +W++P H
Sbjct: 1   WGAEGHRIVAEIAEQYLTPKARKAVDRLLGGLSGESLAEAATWADDIRSDPAYKWTAPWH 60

Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           YV+ PD  C +   RDC         CV  AI NYT +LK               EAL F
Sbjct: 61  YVNIPDNPCKFYDERDC-----PPGGCVVSAIKNYTARLKDPSLS-----DAERAEALKF 110

Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVR-WYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
           L HF+GD+HQPLHVG   D GGN   V  W+ RKTNLH VWD+ +ID A  +Y +   A+
Sbjct: 111 LIHFVGDIHQPLHVGSREDGGGNDGDVGGWFGRKTNLHSVWDSGLIDKAKGSYTELAAAL 170

Query: 196 MIQSIQRNITDGWSND 211
           +   +   I  G    
Sbjct: 171 LAALLAEAIETGLEEA 186

This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis. Length = 249

>gnl|CDD|211380 cd10981, ZnPC_S1P1, Zinc dependent phospholipase C/S1-P1 nuclease

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 22/177 (12%)

Query: 20  GKEGHFAICKIAEGYL-TEDALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYV 78
           G   H  I + A   L  E A      L  +  E  L       D+ R+     +  H +
Sbjct: 1   GFGTHHKIARDAVFTLPPELAEFWSDLLKRNIDE--LLEGAVAPDKRRYDDDGEAQNHVL 58

Query: 79  DT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           D     D   +                     I  +  +L   ++     +  ++  A  
Sbjct: 59  DVDDYGDSALDKYGEDTL-----GYWGGAPWQIQEWYQRLVDAFRRK---DWKDIAFAAG 110

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSD 192
            LSH+IGD H PLH                   +  +H  W+T I +   + Y  +D
Sbjct: 111 VLSHYIGDAHVPLHTT--------QNYNGQLTGQDGIHRAWETRIPELYAELYALTD 159

This model describes both the bacterial and archeal zinc-dependent phospholipase C, a domain found in the alpha toxin of Clostridium perfringens, as well as S1/P1 nucleases, which predominantly act on single-stranded DNA and RNA. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PF02265	252	S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR00315	100.0
smart00770	241	Zn_dep_PLPC Zinc dependent phospholipase C (alpha	96.24

>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3

Probab=100.00  E-value=2.4e-54  Score=380.61  Aligned_cols=203  Identities=38%  Similarity=0.747  Sum_probs=154.8

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCChhccccccccccc---cCCccccccccccCC--CCCCccccCCc
Q 026002           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF---HMRWSSPLHYVDTPD--FMCNYKYCRDC   93 (245)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~a~WaD~ir~---~~~~~~~wHyid~p~--~~~~~~~~~dc   93 (245)
                      ||..|||+||+||+++|+|+++++|++||+.....+|+++|+|||+||.   +++++++|||+|+|.  ..+++...++|
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~   80 (252)
T PF02265_consen    1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC   80 (252)
T ss_dssp             --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence            9999999999999999999999999999986555899999999999994   579999999999998  44566666778


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcc-cccCCCCCCceEEEeeCCcccch
Q 026002           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLH-VGFIGDKGGNTITVRWYRRKTNL  172 (245)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH-~~~~~D~GGN~i~V~~~g~~~nL  172 (245)
                           ++++|++++|.+++++|++.+.+     ..++.++||||+||||||||||| +++++|+|||+++|.++|+++||
T Consensus        81 -----~~~~~~~~ai~~~~~~L~~~~~~-----~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL  150 (252)
T PF02265_consen   81 -----PNGGCVVSAIKNYTSRLKDTSTS-----KAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL  150 (252)
T ss_dssp             ------TT--HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred             -----CCCCcHHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence                 78999999999999999999877     46899999999999999999999 67899999999999999999999


Q ss_pred             hHhhhhhhHhHHhhhcCcchHHHHHHHHHHhhhcccCCCccchhhccCCCccchhhhhhhcCCCceeee
Q 026002          173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCCV  241 (245)
Q Consensus       173 H~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~W~~~~~~~~~c~~~~a~es~~~~~~~~  241 (245)
                      |++||++|++......+..+...+++.|.++++.   .....|..     . |+..|+.||.. |+|.+
T Consensus       151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~~---~~~~~~~~-----~-~~~~Wa~ES~~-la~~~  209 (252)
T PF02265_consen  151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKITK---ESFKSWQP-----G-DPEDWANESHE-LACNI  209 (252)
T ss_dssp             HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHHH-------HHHH-----H-HHHHHHHHHHH-HHHHT
T ss_pred             HHHHHHHHHHhhccccchhhHHHHHHHHHhhccc---hhhhhhhh-----h-hHHHHHHHHHH-HHHHH
Confidence            9999999999887655566778888998888874   67777763     1 69999999966 88764

1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.

>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin)

Probab=96.24  E-value=0.024  Score=50.18  Aligned_cols=113  Identities=20%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhcCCHH----HHHHHHHhCCCCCCCChhccccccccccccCCccccccccccCCCCCCccccCCccccC
Q 026002           22 EGHFAICKIAEGYLTED----ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSV   97 (245)
Q Consensus        22 ~GH~~Va~IA~~~L~~~----a~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc~~~~   97 (245)
                      .-|.-|..=|...|...    ....| ++|... -..|..-..|||.-...+.- ...||.|...+ .+|-+.       
T Consensus        38 ~tH~~I~~qAi~iL~nd~~~~~~~~~-~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~~-------  106 (241)
T smart00770       38 NTHLFIVNQALEILKNDNNKNEYKLV-EILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLPG-------  106 (241)
T ss_pred             cHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHH-HHHHHcCCcccccCcccccc-ccccccCCCCC-CCCCCC-------
Confidence            67999999999988654    22211 233211 23577778999986643332 26799886443 232111       


Q ss_pred             CCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026002           98 GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG  151 (245)
Q Consensus        98 ~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~  151 (245)
                         .....+....+...-.+.-....   ...--+.|-.-.|+++|+-||+|+.
T Consensus       107 ---~~~A~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~  154 (241)
T smart00770      107 ---FSNAKDTGRKYFKLALNEWKKGN---YKKAFFYLGRACHYLGDLSTPYHAN  154 (241)
T ss_pred             ---CCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCccccc
Confidence               11233444444443332211110   1122355677899999999999996

This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
3sng_A	277	X-ray Structure Of Fully Glycosylated Bifunctional		5e-65
4dj4_A	277	X-ray Structure Of Mutant N211d Of Bifunctional Nuc		2e-64
1ak0_A	270	P1 Nuclease In Complex With A Substrate Analog Leng		5e-19

>pdb|3SNG|A Chain A, X-ray Structure Of Fully Glycosylated Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/215 (53%), Positives = 153/215 (71%), Gaps = 5/215 (2%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR  +  +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL S Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 197 IQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYA 230
            + I+ N TDG WS+D++SW  C N  + C N +A
Sbjct: 180 EEDIEGNFTDGIWSDDLASWRECGNVFS-CVNKFA 213

>pdb|4DJ4|A Chain A, X-ray Structure Of Mutant N211d Of Bifunctional Nuclease Tbn1 From Solanum Lycopersicum (tomato) Length = 277

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 153/215 (71%), Gaps = 5/215 (2%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR  +  +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60
Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL S Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQL-SHYREGTSDRRYNMTEALLF 119
Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179
Query: 197 IQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYA 230
            + I+ + TDG WS+D++SW  C N  + C N +A
Sbjct: 180 EEDIEGDFTDGIWSDDLASWRECGNVFS-CVNKFA 213

>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog Length = 270

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 96/194 (49%), Gaps = 16/194 (8%)
Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 77  YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D    P   CN  Y RDC  S      C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110
Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 194 AVMIQSIQRNITDG 207
               +++ +NI  G
Sbjct: 170 ESWAKTLVQNIESG 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	1e-60
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	8e-54
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} Length = 277

 Score =  191 bits (485), Expect = 1e-60
 Identities = 113/220 (51%), Positives = 149/220 (67%), Gaps = 4/220 (1%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           W KEGH   C+IA+G L ++A  AVK LLP+   GDL+ +C W D+VR     +W+SPLH
Sbjct: 1   WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLH 60

Query: 77  YVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMF 136
           ++DTPD  CN+ Y RDCHD  G K+ CV GAI N+T QL   Y++  S  +YN+TEAL+F
Sbjct: 61  FIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSH-YREGTSDRRYNMTEALLF 119

Query: 137 LSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVM 196
           LSHF+GD+HQP+HVGF  D GGN+I +RW+R K+NLHHVWD  II +A K YY  DI ++
Sbjct: 120 LSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLL 179

Query: 197 IQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYAHSIQF 235
            + I+ N TDG WS+D++SW  C N  +        SI  
Sbjct: 180 EEDIEGNFTDGIWSDDLASWRECGNVFSCVNKFATESINI 219

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2 Length = 270

 Score =  173 bits (440), Expect = 8e-54
 Identities = 69/221 (31%), Positives = 102/221 (46%), Gaps = 19/221 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDTPD---FMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D  D     CN  Y RDC       + C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGS-----SGCSISAIANYTQRVSDS-----SLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEA-YAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSWENC--ANNQTVCPNGYAH 231
               +++ +NI  G ++     W      +        +A 
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWAS 210

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 47/316 (14%), Positives = 91/316 (28%), Gaps = 101/316 (31%)

Query: 9   LLQL-------VNGVLGWGKEGHFAICKIAEGYLTEDALAA--VKELLP----------- 48
           LL+L       ++GVLG GK            ++  D   +  V+  +            
Sbjct: 144 LLELRPAKNVLIDGVLGSGKT-----------WVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 49  DSAEGDLA---NVCSWAD---EVRFHMRWSSPLHYVDTPD----FMCNYKYCRDCH---D 95
           +S E  L     +    D     R     +  L            + +  Y   C     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLL 251

Query: 96  SVGRKN-------RC---VTGAIYNYTMQLKSGYQDSISVEKYNLT----EALMFLSHFI 141
           +V            C   +T      T  L +     IS++ +++T    E    L  ++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 142 G-----------DVHQPLHVGFIGDKGGNTITVRW-YRRKTNLHHVWDTMIIDSAL---- 185
                         + P  +  I +   + +   W   +  N   +  T II+S+L    
Sbjct: 312 DCRPQDLPREVLTTN-PRRLSIIAESIRDGLA-TWDNWKHVNCDKL--TTIIESSLNVLE 367

Query: 186 ----KTYYDSDIAVMIQSIQRNITDG-----WSNDVSS-----WENCAN----NQTVCPN 227
               +  +D  ++V   S   +I        W + + S                +    +
Sbjct: 368 PAEYRKMFD-RLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 228 GYA-HSIQFPLHCCVD 242
             +  SI   L   ++
Sbjct: 425 TISIPSIYLELKVKLE 440

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
3sng_A	277	Nuclease; mainly alpha helical, trinuclear metal c	100.0
1ak0_A	270	P1 nuclease; endonuclease, reaction mechanism, thi	100.0
1ah7_A	245	Phospholipase C; phospholipid hydrolysis, hydrolas	99.97
2wxu_A	370	Phospholipase C; cytolysis, hydrolase, hemolysis,	89.99
1olp_A	370	Alpha-toxin; zinc phospholipase C, GAS gangrene de	89.84

>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} PDB: 4dj4_A*

Probab=100.00  E-value=1.5e-64  Score=451.49  Aligned_cols=215  Identities=53%  Similarity=1.059  Sum_probs=199.1

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCChhcccccccccc--ccCCccccccccccCCCCCCccccCCcccc
Q 026002           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDS   96 (245)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~a~WaD~ir--~~~~~~~~wHyid~p~~~~~~~~~~dc~~~   96 (245)
                      ||..||++||+||+++|+|+++++|++||+...+.+|+++|+|||+||  ++++|+++|||+|+|++.|+|+|+|||++.
T Consensus         1 Wg~~GH~~Va~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~c~~~~~rdc~~~   80 (277)
T 3sng_A            1 WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQ   80 (277)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHHHSCGGGTTCGGGTTTHHHHHTTSGGGGGGGGGGCCCBCTTTCCCCHHHHCBCT
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCcccccCHHHHhhhHhhhcccccccccCcceeecCCCCcCCCcccCCcccc
Confidence            999999999999999999999999999999766789999999999999  568999999999999999999999999765


Q ss_pred             CCCCCCcHHHHHHHHHHHHccCC----CCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccch
Q 026002           97 VGRKNRCVTGAIYNYTMQLKSGY----QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNL  172 (245)
Q Consensus        97 ~~~~~~cv~~aI~~~~~~L~~~~----~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nL  172 (245)
                      .+++++||++||++++++|++.+    ++     .+++.+|||||||||||||||||+++.+|+|||+|+|.|+|+++||
T Consensus        81 ~~~~~~cvv~aI~~~t~~L~~~~~~~~~~-----~~~~~~aLkfLvHfvGDiHQPLH~g~~~D~GGN~i~V~~~g~~~NL  155 (277)
T 3sng_A           81 HGVKDMCVAGAIQNFTTQLSHYREGTSDR-----RYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNL  155 (277)
T ss_dssp             TCCBTCSHHHHHHHHHHHHTTTTTCCCCT-----TCCHHHHHHHHHHHHHHHHSGGGGCBTTTTTTTTCEEEETTEEEEH
T ss_pred             cCCCcchHHHHHHHHHHHHcCCCCcccCC-----hHHHHHHHHHHHHHhccccCCccCCCCcCCCCCeEEEEECCccCch
Confidence            55679999999999999999985    33     5789999999999999999999999999999999999999999999


Q ss_pred             hHhhhhhhHhHHhhhcCcchHHHHHHHHHHhhhcc-cCCCccchhhccCCCccchhhhhhhcCCCceee
Q 026002          173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYAHSIQFPLHCC  240 (245)
Q Consensus       173 H~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~W~~~~~~~~~c~~~~a~es~~~~~~~  240 (245)
                      |+|||+.||+++.+.++..++..|++.|.++|+.+ |+.++.+|.+|. ++..||..|+.||+. |+|.
T Consensus       156 H~vWDs~ii~~~~~~~~~~~~~~~a~~L~~~i~~~~~~~~~~~w~~~~-~~~~~~~~Wa~ES~~-la~~  222 (277)
T 3sng_A          156 HHVWDREIILTAAKDYYAKDINLLEEDIEGNFTDGIWSDDLASWRECG-NVFSCVNKFATESIN-IACK  222 (277)
T ss_dssp             HHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTHHHHHCCC-SHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHhhhhhhhhccccccCHHHHHHHHHHHhhcccchhHHHHHhhcc-cccCCHHHHHHHHHH-HHHH
Confidence            99999999999887777777889999999999986 899999999984 577899999999987 8886

>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2

Probab=100.00  E-value=2.8e-59  Score=415.82  Aligned_cols=211  Identities=34%  Similarity=0.592  Sum_probs=191.8

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCChhccccccccccc--cCCccccccccccCC---CCCCccccCCc
Q 026002           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLHYVDTPD---FMCNYKYCRDC   93 (245)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~a~WaD~ir~--~~~~~~~wHyid~p~---~~~~~~~~~dc   93 (245)
                      ||..|||+||+||+++|+|+++++|++||+.+.+.+|+++|+|||+||.  .++|+++|||+|+|.   ..|.+++.|+|
T Consensus         1 Wg~~GH~~va~iA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~~~~p~~~c~~~~~rdc   80 (270)
T 1ak0_A            1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (270)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCCCCcccHHHHccchhhcccCCCCCccccccCCCCcCCCCcCCCCcccCCC
Confidence            9999999999999999999999999999997666779999999999993  589999999999964   56999999999


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchh
Q 026002           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLH  173 (245)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nLH  173 (245)
                           ++++|+++||++++++|++.+.+     .+++.++||||+|||||||||||++ .+|+|||+|+|.|+|+++|||
T Consensus        81 -----~~~~cv~~ai~~~~~~L~~~~~s-----~~~~~~aL~fLvH~vGDiHQPLH~~-~~D~GGN~i~V~~~g~~~nLH  149 (270)
T 1ak0_A           81 -----GSSGCSISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (270)
T ss_dssp             -----CTTCCHHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             -----CCcccHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHHHcccccCcccCc-CcCCCCCeEEEEECCccCccH
Confidence                 67899999999999999998776     5789999999999999999999999 689999999999999999999


Q ss_pred             HhhhhhhHhHHhhhcCcchHHHHHHHHHHhhhcc-cCCCccchhhccC--CCccchhhhhhhcCCCceeee
Q 026002          174 HVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCAN--NQTVCPNGYAHSIQFPLHCCV  241 (245)
Q Consensus       174 ~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~W~~~~~--~~~~c~~~~a~es~~~~~~~~  241 (245)
                      +|||++|+++..+.++..+...|++.|.++++.+ |+.+...|..|..  +...|+..|+.||+. |+|..
T Consensus       150 ~vWDs~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~wa~ES~~-la~~~  219 (270)
T 1ak0_A          150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANA-LVCTV  219 (270)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHH-HHHHT
T ss_pred             HHHhccchhhhccccCcchHHHHHHHHHHhcccCCCchhHHHhhcCccccccccCHHHHHHHHHH-HHHHH
Confidence            9999999999877777778889999999999877 7889999988752  456899999999977 88864

>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A

Probab=99.97  E-value=3e-32  Score=238.55  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=125.2

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHH---HhCCCCCCCChhcccccccccccc-C-CccccccccccCCCCCCccccCCcc
Q 026002           20 GKEGHFAICKIAEGYLTEDALAAVK---ELLPDSAEGDLANVCSWADEVRFH-M-RWSSPLHYVDTPDFMCNYKYCRDCH   94 (245)
Q Consensus        20 g~~GH~~Va~IA~~~L~~~a~~~v~---~lL~~~~~~~l~~~a~WaD~ir~~-~-~~~~~wHyid~p~~~~~~~~~~dc~   94 (245)
                      |..||+.|+++|...|+......++   ..+..+ ...|...|+|||+ |.. + +++++|||+|+|.+ |+|.+.++|.
T Consensus        10 ~~~tH~~I~~~A~~~L~~~~~~~~~~~~~~~~~w-~D~i~~~~~w~D~-k~~~~~~~~~~~Hy~d~~~~-~~~~~~~~~~   86 (245)
T 1ah7_A           10 GVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADY-ENPYYDNSTFASHFYDPDNG-KTYIPFAKQA   86 (245)
T ss_dssp             GGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTT-STTTTTTTTCGGGCCBTTTT-BCSSTTCCCH
T ss_pred             CCcHHHHHHHHHHHHhccccchHHHHHHHHHHhC-HHHHHhcCcCCCc-ccccccccCCCcccccCCCC-CCCCCCCCCc
Confidence            5789999999999999766421111   112221 2356677888888 733 3 89999999999874 8999989993


Q ss_pred             ccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhH
Q 026002           95 DSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHH  174 (245)
Q Consensus        95 ~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~  174 (245)
                           + +|++.+|.+++..|++.+       ..++.++|+||+|||||||||||       |||.+.   +|+.+|||+
T Consensus        87 -----~-~~~~~~~~~~~~~l~~~~-------~~~~~~aL~~l~H~vGDiHQPlH-------~gn~~~---~~~~~nlH~  143 (245)
T 1ah7_A           87 -----K-ETGAKYFKLAGESYKNKD-------MKQAFFYLGLSLHYLGDVNQPMH-------AANFTN---LSYPQGFHS  143 (245)
T ss_dssp             -----H-HHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTSTTT-------TTTCCT---TSSSTTHHH
T ss_pred             -----c-hHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhcCCCCC-------CCcccc---CCCCCCchH
Confidence                 2 399999999999998864       24899999999999999999999       677776   588899999


Q ss_pred             hhhhhhHhHHhhhcCcchHHHHHHHHHHhhhcccCCCccchhhccCCCccchhhhhhhcCCCceee
Q 026002          175 VWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQFPLHCC  240 (245)
Q Consensus       175 vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~W~~~~~~~~~c~~~~a~es~~~~~~~  240 (245)
                      +|| .+|++.... |..             ..  .++...|..      .||..|+.||+. + |-
T Consensus       144 ~WD-~~i~~~~~~-y~~-------------~~--~~~~~~~~~------~~~~~W~~Es~~-~-a~  184 (245)
T 1ah7_A          144 KYE-NFVDTIKDN-YKV-------------TD--GNGYWNWKG------TNPEEWIHGAAV-V-AK  184 (245)
T ss_dssp             HHH-HHHHHHGGG-GCC-------------CS--SCCCTTCSC------SCHHHHHHHHHH-H-HH
T ss_pred             HHH-HHHHHHhhc-ccc-------------cc--hHHHHHHhc------CCHHHHHHHHHH-H-HH
Confidence            999 888764222 111             00  134444532      378899999876 4 53

>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A

Probab=89.99  E-value=0.11  Score=47.44  Aligned_cols=124  Identities=16%  Similarity=0.097  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHH-------HHHHHhCCCCCCCChhccccccccccccCCccccccccccCCCCCCccccCCc
Q 026002           21 KEGHFAICKIAEGYLTEDAL-------AAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (245)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~a~-------~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc   93 (245)
                      ..-|.-|+.=|...|.....       +.-.++|... -..|-.=++|||.=...+. .-.-||.|...+. ++......
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~~-~~~~~~~w   84 (370)
T 2wxu_A            8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKEN-MHELQLGSTYPDYDKNAYD-LYQDHFWDPDIDN-NFSKDNSW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGTCTTCCT-TCGGGCCCTTC----------C
T ss_pred             CchHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCCC-Cccccccc
Confidence            45688899888877733211       1222222210 1256666899998332221 2234888764431 22111000


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026002           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG  151 (245)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~  151 (245)
                      -... .-.....+....+.+.-.+.-....   ...--+.|--.+|||+|+.||+|+.
T Consensus        85 ~~~~-~~~~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~  138 (370)
T 2wxu_A           85 YLAY-SIPDTGESQIRKFSALARYEWQRGN---YKQATFYLGEAMHYFGDIDTPYHPA  138 (370)
T ss_dssp             TTTB-CBCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTSSTTTT
T ss_pred             cccc-CCCCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccc
Confidence            0000 0001233444444444332211110   1234577888999999999999994

>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3

Probab=89.84  E-value=0.076  Score=48.50  Aligned_cols=124  Identities=15%  Similarity=0.076  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHhcCCHHH-------HHHHHHhCCCCCCCChhccccccccccccCCccccccccccCCCCCCccccCCc
Q 026002           21 KEGHFAICKIAEGYLTEDA-------LAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDC   93 (245)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~a-------~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc   93 (245)
                      ..-|..|+.=|...|....       .+.-.++|... -..|-.=++|||.=...+. .-.-||.|...+. ++......
T Consensus         8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~~-~~~~~~~w   84 (370)
T 1olp_A            8 TGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDPDTDH-NFTQDNKW   84 (370)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBTTTTB-CHHHHSGG
T ss_pred             CchHHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCCC-Cccccccc
Confidence            4568899988888884322       22222333211 2356667899998332221 2234888764431 22110000


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026002           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG  151 (245)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~  151 (245)
                      -... .-.....+....+...-.+.-....   ...--+.|-..+|||+|+.||+|+.
T Consensus        85 ~~~~-~~~~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~  138 (370)
T 1olp_A           85 YLSY-AVPDNAESQTRKFATLAKNEWDKGN---YEKAAWYLGQGMHYFGDLNTPYHAA  138 (370)
T ss_dssp             GGGG-CCSCCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTSHHHHT
T ss_pred             cccc-CCCCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccc
Confidence            0000 0001233334444443332211110   1234577888999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1ak0a_	264	a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [	4e-56
d1ah7a_	245	a.124.1.1 (A:) Bacterial phosholipase C {Bacillus	2e-33

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]} Length = 264

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

 Score =  178 bits (452), Expect = 4e-56
 Identities = 69/221 (31%), Positives = 102/221 (46%), Gaps = 19/221 (8%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF--HMRWSSPLH 76
           WG  GH  +  +A+ Y++ +A +  + +L  S+   LA++ SWADE R     +WS+ LH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 77  YVDTPDFM---CNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
           ++D  D     CN  Y RDC       + C   AI NYT ++        S+   N  EA
Sbjct: 61  FIDAEDNPPTNCNVDYERDCGS-----SGCSISAIANYTQRVS-----DSSLSSENHAEA 110

Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
           L FL HFIGD+ QPLH       GGN I V +     NLH  WDT +    +  +  SD 
Sbjct: 111 LRFLVHFIGDMTQPLHDEAY-AVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169

Query: 194 AVMIQSIQRNITDG-WSNDVSSWENC--ANNQTVCPNGYAH 231
               +++ +NI  G ++     W      +        +A 
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWAS 210

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]} Length = 245

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

 Score =  119 bits (298), Expect = 2e-33
 Identities = 24/219 (10%), Positives = 53/219 (24%), Gaps = 38/219 (17%)

Query: 19  WGKEGHFAICKIAEGYLTEDALAAVKELLP--DSAEGDLANVCSWADEVR-FHMRWSSPL 75
            G   H  I   A   ++ +     ++ +   +    +L N    AD    ++   +   
Sbjct: 9   EGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEWRTELENGIYAADYENPYYDNSTFAS 68

Query: 76  HYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALM 135
           H+ D  +    Y                       + +  +S     +    +     L 
Sbjct: 69  HFYDPDN-GKTYIPFAKQ---------AKETGAKYFKLAGESYKNKDMKQAFF----YLG 114

Query: 136 FLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAV 195
              H++GDV+QP+H                       H  ++  +               
Sbjct: 115 LSLHYLGDVNQPMHAA----------NFTNLSYPQGFHSKYENFVDTIKDNYKVTDGN-- 162

Query: 196 MIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYAHSIQ 234
                     +    +   W        V    Y+  + 
Sbjct: 163 -------GYWNWKGTNPEEW--IHGAAVVAKQDYSGIVN 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1ak0a_	264	P1 nuclease {Penicillium citrinum [TaxId: 5077]}	100.0
d1ah7a_	245	Bacterial phosholipase C {Bacillus cereus [TaxId:	99.95
d1ca1a1	249	Alpha-toxin, N-terminal domain {Clostridium perfri	96.22
d1olpa1	249	Alpha-toxin, N-terminal domain {Clostridium absonu	91.42

>d1ak0a_ a.124.1.2 (A:) P1 nuclease {Penicillium citrinum [TaxId: 5077]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: P1 nuclease
domain: P1 nuclease
species: Penicillium citrinum [TaxId: 5077]

Probab=100.00  E-value=4.7e-58  Score=404.47  Aligned_cols=211  Identities=34%  Similarity=0.579  Sum_probs=189.1

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCChhcccccccccc--ccCCccccccccccCCC---CCCccccCCc
Q 026002           19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMRWSSPLHYVDTPDF---MCNYKYCRDC   93 (245)
Q Consensus        19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~a~WaD~ir--~~~~~~~~wHyid~p~~---~~~~~~~~dc   93 (245)
                      ||.+|||+||+||+++|+|+++++|++||+.....+|+++|+|||+||  +.++++.+|||+|+|.+   .|.+.++++|
T Consensus         1 Wg~~GH~~Va~iA~~~L~~~~~~~v~~iL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyvn~p~~~~~~~~~~~~~~~   80 (264)
T d1ak0a_           1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC   80 (264)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred             CCcHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCceeeeeChHhhcCCCccchhhccccCCCCCCCCccccccccccC
Confidence            999999999999999999999999999999766678999999999999  56789999999999753   5677888899


Q ss_pred             cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchh
Q 026002           94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLH  173 (245)
Q Consensus        94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nLH  173 (245)
                           ++++|+++||++++++|++++.+     .+++.+|||||||||||||||||++ ..|+|||+|+|.|+|+++|||
T Consensus        81 -----~~~~~i~~ai~~~~~~l~~~~~s-----~~~~~~aL~~LvHlvGDiHQPLH~~-~~D~GGN~i~V~~~g~~~NLH  149 (264)
T d1ak0a_          81 -----GSSGCSISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH  149 (264)
T ss_dssp             -----CTTCCHHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred             -----CCCccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHhhcccccccc-CcCCCCCeeEEEECCccCcHH
Confidence                 78999999999999999998876     4689999999999999999999988 789999999999999999999


Q ss_pred             HhhhhhhHhHHhhhcCcchHHHHHHHHHHhhhcc-cCCCccchhhcc--CCCccchhhhhhhcCCCceeee
Q 026002          174 HVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCA--NNQTVCPNGYAHSIQFPLHCCV  241 (245)
Q Consensus       174 ~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~W~~~~--~~~~~c~~~~a~es~~~~~~~~  241 (245)
                      +|||+.|+++++..+..+....+++.|.+++... |.++...|..+.  ..+..||..|+.||+. |+|.+
T Consensus       150 ~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Es~~-la~~~  219 (264)
T d1ak0a_         150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANA-LVCTV  219 (264)
T ss_dssp             HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHH-HHHHT
T ss_pred             HHHhhhHHhhhccccccchHHHHHHHHHHhccccccHHHhhhhhccccccccccCHHHHHHHHHH-HHHHH
Confidence            9999999999887777777788999999988776 678889997764  2456799999999966 77754

>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Bacterial phosholipase C
species: Bacillus cereus [TaxId: 1396]

Probab=99.95  E-value=8.4e-31  Score=227.59  Aligned_cols=184  Identities=16%  Similarity=0.115  Sum_probs=128.8

Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHH---HHHHHhCCCCCCCChhccccccccccccC-CccccccccccCCCCCCcccc
Q 026002           15 GVLGWGKEGHFAICKIAEGYLTEDAL---AAVKELLPDSAEGDLANVCSWADEVRFHM-RWSSPLHYVDTPDFMCNYKYC   90 (245)
Q Consensus        15 ~a~AWg~~GH~~Va~IA~~~L~~~a~---~~v~~lL~~~~~~~l~~~a~WaD~ir~~~-~~~~~wHyid~p~~~~~~~~~   90 (245)
                      ...+||..||+.|+.+|+..|++++.   +.+-++|.. ...+|.+.++|||++|..+ +++.+|||+|.|.+ +++...
T Consensus         5 ~~~~~g~~tH~~I~~~A~~~L~~d~~~~~~~~~~~l~~-y~~~l~~g~~waD~~~~~~~~~~~~~Hf~~~~~~-~~~~~~   82 (245)
T d1ah7a_           5 DKHKEGVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNE-WRTELENGIYAADYENPYYDNSTFASHFYDPDNG-KTYIPF   82 (245)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHH-THHHHHHHHHHTTTSTTTTTTTTCGGGCCBTTTT-BCSSTT
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHhcCcCccccccccccccCCceeeeCCCC-CCcCCC
Confidence            45799999999999999999988754   333333431 1347999999999999544 57899999996654 555544


Q ss_pred             CCccccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCccc
Q 026002           91 RDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKT  170 (245)
Q Consensus        91 ~dc~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~  170 (245)
                      .++      ..++++.+++.....+++.+.+       +..++|++++|||||+|||||++.          |.++|+.+
T Consensus        83 ~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~h~~~d~~qP~H~~~----------v~~~~~~~  139 (245)
T d1ah7a_          83 AKQ------AKETGAKYFKLAGESYKNKDMK-------QAFFYLGLSLHYLGDVNQPMHAAN----------FTNLSYPQ  139 (245)
T ss_dssp             CCC------HHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHHHHTSTTTTTT----------CCTTSSST
T ss_pred             CCC------hHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHhhcCCCccccc----------cccCCCCC
Confidence            443      3456778888888888876432       567899999999999999999972          66788999


Q ss_pred             chhHhhhhhhHhHHhhhcCcchHHHHHHHHHHhhhccc-CCCccchhhccCCCccchhhhhhhcCC
Q 026002          171 NLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGW-SNDVSSWENCANNQTVCPNGYAHSIQF  235 (245)
Q Consensus       171 nLH~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~W~~~~~~~~~c~~~~a~es~~  235 (245)
                      |||++||+.|++... .+.....         .....+ ...+.+|..  +....|+..|+.||+.
T Consensus       140 NLH~~WDs~i~~~~~-~~~~~~~---------~~~~~~~~~~~~~~i~--~~~~~~~~~w~~es~~  193 (245)
T d1ah7a_         140 GFHSKYENFVDTIKD-NYKVTDG---------NGYWNWKGTNPEEWIH--GAAVVAKQDYSGIVND  193 (245)
T ss_dssp             THHHHHHHHHHHHGG-GGCCCSS---------CCCTTCSCSCHHHHHH--HHHHHHHHTGGGTSSH
T ss_pred             CcHHHHHhhHHHhhh-hhhhhHH---------HHHHHHhccCHHHHHH--HHhhcCHHHHHHHHHH
Confidence            999999999997632 1110000         000111 244556644  2334467778888765

>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium perfringens, different strains [TaxId: 1502]

Probab=96.22  E-value=0.0049  Score=51.45  Aligned_cols=140  Identities=14%  Similarity=0.071  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHhcCCHH--------HHHHHHHhCCCCCCCChhccccccccccccCCccccccccccCCCCCCccccCC
Q 026002           21 KEGHFAICKIAEGYLTED--------ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRD   92 (245)
Q Consensus        21 ~~GH~~Va~IA~~~L~~~--------a~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~d   92 (245)
                      ..-|..|+.=|...|...        .+..++.|..  .-..|..-+.|||.-...|+ +-..||.|...+ .++.....
T Consensus         8 ~~TH~~i~~qA~~iL~nD~~~~~~~~~~~~~~~L~~--y~~~~~~G~~~~D~~~~~y~-~f~~HFy~p~~~-k~~~g~~~   83 (249)
T d1ca1a1           8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKE--NMHELQLGSTYPDYDKNAYD-LYQDHFWDPDTD-NNFSKDNS   83 (249)
T ss_dssp             BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHH--THHHHHHHHHGGGTCTTCCT-TCGGGCCCTTTC-SSTTTCSC
T ss_pred             CchHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH--HHHHHhcCCcCcccCCccCc-ccccccccCCCC-CCccCccc
Confidence            346999999888776543        1222222221  02356677899997654443 345699876443 12211100


Q ss_pred             ccccCCCCCCcHHHHHHHHHHHHccC-CCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccc
Q 026002           93 CHDSVGRKNRCVTGAIYNYTMQLKSG-YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTN  171 (245)
Q Consensus        93 c~~~~~~~~~cv~~aI~~~~~~L~~~-~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~n  171 (245)
                      -.-.. .-.....+....|...-.+. ....    ...--+.|-...|+|+|+.||+|++.       .     -....+
T Consensus        84 ~~~~~-~~~~~a~~~~~ky~~~A~~~~~~~~----~~~a~~~LG~a~Hy~~D~~~P~Ha~N-------~-----t~~~~~  146 (249)
T d1ca1a1          84 WYLAY-SIPDTGESQIRKFSALARYEWQRGN----YKQATFYLGEAMHYFGDIDTPYHPAN-------V-----TAVDSA  146 (249)
T ss_dssp             CCCSS-CCCCCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHTSSTTTTT-------C-----CTTTCT
T ss_pred             ccccc-cccchHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHhcCCCcccccc-------c-----cccCcc
Confidence            00000 11123444444444433321 1110    11233668889999999999999961       0     011234


Q ss_pred             hhHhhhhhhH
Q 026002          172 LHHVWDTMII  181 (245)
Q Consensus       172 LH~vWDs~ii  181 (245)
                      -|+..++-+-
T Consensus       147 ~H~~yEn~V~  156 (249)
T d1ca1a1         147 GHVKFETFAE  156 (249)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            5888777764

>d1olpa1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain {Clostridium absonum [TaxId: 29369]}

class: All alpha proteins
fold: Phospholipase C/P1 nuclease
superfamily: Phospholipase C/P1 nuclease
family: Phospholipase C
domain: Alpha-toxin, N-terminal domain
species: Clostridium absonum [TaxId: 29369]

Probab=91.42  E-value=0.037  Score=45.88  Aligned_cols=143  Identities=16%  Similarity=0.121  Sum_probs=69.7

Q ss_pred             ChHHHHHHHHHHHhcCC----HHHHHHHH---HhCCCCCCCChhccccccccccccCCccccccccccCCCCCCccccCC
Q 026002           20 GKEGHFAICKIAEGYLT----EDALAAVK---ELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRD   92 (245)
Q Consensus        20 g~~GH~~Va~IA~~~L~----~~a~~~v~---~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~d   92 (245)
                      |..-|.-|+.=|...|.    .+....++   ++|... ...|..-+.|||.=-..+. +-.-||.|...+ .++.-..+
T Consensus         7 g~~TH~~I~~qAi~IL~nd~~~~~~~~~~~~~~~l~~~-~~~~~~G~~~aD~d~~~y~-~f~~HFy~pdtg-k~~~g~~~   83 (249)
T d1olpa1           7 GTGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDPDTD-HNFTQDNK   83 (249)
T ss_dssp             TBSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBTTTT-BCHHHHSG
T ss_pred             CcchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHh-HHHHhcCCcCccCCCcccc-ccccccccCCCC-CCCcCCcc
Confidence            34568889888887773    22222221   223211 1245666789996332221 223488876443 12211100


Q ss_pred             ccccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccch
Q 026002           93 CHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNL  172 (245)
Q Consensus        93 c~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDlHQPLH~~~~~D~GGN~i~V~~~g~~~nL  172 (245)
                      -.... .-.....+....+...-.+.-....   ...--+.|-...|+++|+.||+|++       |...     ...+.
T Consensus        84 ~~~~~-~~~~~A~~~~~ky~~~A~~~~~~g~---~~~a~~~LG~a~Hy~~D~~qP~Haa-------N~t~-----v~~~~  147 (249)
T d1olpa1          84 WYLSY-AVPDNAESQTRKFATLAKNEWDKGN---YEKAAWYLGQGMHYFGDLNTPYHAA-------NVTA-----VDSPG  147 (249)
T ss_dssp             GGGGG-CCSCCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTSHHHHT-------TCCT-----TTCHH
T ss_pred             ccccc-cCCccHHHHHHHHHHHHHHHHHccC---HHHHHHHHHhHhHHhhcCCCCcccc-------cccc-----ccccc
Confidence            00000 1112344444444443332211110   1123367788999999999999986       1111     12235


Q ss_pred             hHhhhhhhH
Q 026002          173 HHVWDTMII  181 (245)
Q Consensus       173 H~vWDs~ii  181 (245)
                      |+..++-+-
T Consensus       148 H~~yE~yV~  156 (249)
T d1olpa1         148 HVKFETYAE  156 (249)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887776664