Citrus Sinensis ID: 026011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MASYSMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHcccccccccccEEcccccccHHHHHHHcccccccccccccccEEEEEcccccEEEEccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEEEEccccccEEHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccccHHHHHHHHHHccccEcccccEEEcccccccHHHHHHHHcccccccccEEEccEEEEEcccccEEEEccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masysmpfsaafssplrhftqiktcpaawassmaaswtptnsikssigsakpgflqhglfsqssnlpgffvkrrsfgvhataatekslydftvkdidgkdvplskfkgKVLLIVNVAsrcgltpsnysELSHLYEKYKTQGfeilafpcnqfggqepgsnpeikefactrfkaefpifdkvdvngpntapVYQFLKssaggflgDLVKWNFEKFlvdkngkvieryppttspfqiEKDIQKLVVA
Flexible Loop (DISEMBL)
MASYSMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHataatekslydftVKDIDGkdvplskfkgKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLvdkngkvieryppttspfqiekDIQKLVVA
Low Complexity Region (SEG)
MASYSMPFSAAFSSPLRHFTQIKTCPaawassmaaswTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA
Disordered region (IsUnstruct)
***************LRHFTQIKTCPAAWASSMAASWTP************PGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG*******EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP******************
Disordered Region (DISOPRED)
************SSPLRHF*************************************HGLFSQSSNLPGFFV****************LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA
Disordered Region (DISEMBL)
MASYSMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA
Disordered Region (DISPRO)
*******************************************************QHGLFSQSSNLPG**************ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASYSMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
O24296	236	Phospholipid hydroperoxid	N/A	no	0.938	0.974	0.702	4e-91
Q9SZ54	233	Putative glutathione pero	yes	no	0.946	0.995	0.692	2e-88
P52032	236	Phospholipid hydroperoxid	no	no	0.832	0.864	0.769	7e-88
O48646	232	Probable phospholipid hyd	no	no	0.783	0.827	0.659	1e-69
Q06652	167	Probable phospholipid hyd	no	no	0.661	0.970	0.722	3e-67
Q9LEF0	170	Probable phospholipid hyd	N/A	no	0.644	0.929	0.734	1e-65
O23814	171	Probable phospholipid hyd	N/A	no	0.665	0.953	0.693	9e-65
P30708	169	Probable phospholipid hyd	N/A	no	0.644	0.934	0.708	1e-64
Q9FXS3	169	Probable phospholipid hyd	N/A	no	0.644	0.934	0.702	2e-64
O24031	169	Probable phospholipid hyd	N/A	no	0.644	0.934	0.702	2e-64

>sp|O24296|GPX1_PEA Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1

 Score =  334 bits (856), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 172/245 (70%), Positives = 192/245 (78%), Gaps = 15/245 (6%)

Query: 5   SMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSI---KSSIGSAKPGFLQHGLFS 61
           SM FS  F +PLR F Q +T           + TP+ S+   KSSI S+K  F Q G   
Sbjct: 3   SMAFSTTFFTPLRDFNQPRT-----------NSTPSTSLPFTKSSIASSKSPFFQLGFSQ 51

Query: 62  Q-SSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRC 120
           Q SSN P    K RSF V+A A  +K++YDFTVKDID KDV LSKFKGKVLLIVNVASRC
Sbjct: 52  QASSNFPIVPSKTRSFSVNAKAIKDKTIYDFTVKDIDKKDVSLSKFKGKVLLIVNVASRC 111

Query: 121 GLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180
           GLT SNY+ELSHLYE +K +G E+LAFPCNQFG QEPGSN EIK+FACT+FKAEFPIFDK
Sbjct: 112 GLTSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDK 171

Query: 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240
           VDVNGP TAPVYQFLKSS+GGF GD+VKWNFEKFLVDKNGKV+ERYPPTTSPFQIEKDIQ
Sbjct: 172 VDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQ 231

Query: 241 KLVVA 245
           KL+ A
Sbjct: 232 KLLAA 236

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 2

>sp|Q9SZ54|GPX7_ARATH Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=3 SV=2

 Score =  325 bits (833), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 194/241 (80%), Gaps = 9/241 (3%)

Query: 6   MPFS-AAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSS 64
           M FS A+FS+P   F       AA  S + +++    S++ S  ++K     +G+  +SS
Sbjct: 1   MAFSYASFSTPFNGF-------AANPSPITSAFLGP-SLRFSTRTSKTRNPSNGVSVKSS 52

Query: 65  NLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTP 124
           N   F VK ++F V+A AA EKS++DFTVKDIDG DV L KFKGK LLIVNVASRCGLT 
Sbjct: 53  NSHRFLVKSKNFSVYARAAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTS 112

Query: 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184
           SNYSELS LYEKYK QGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKVDVN
Sbjct: 113 SNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN 172

Query: 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244
           GP+TAP+Y+FLKS+AGGFLGD++KWNFEKFLVDK GKV+ERYPPTTSPFQIEKDIQKL+ 
Sbjct: 173 GPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIEKDIQKLLA 232

Query: 245 A 245
           A
Sbjct: 233 A 233

May constitute a glutathione peroxidase-like protective system against oxidative stresses.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|P52032|GPX1_ARATH Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2

 Score =  323 bits (828), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 157/204 (76%), Positives = 175/204 (85%)

Query: 42  SIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDV 101
           S+K S G +    L +G   +S   PGF  K R F V A AA EK+++DFTVKDIDGKDV
Sbjct: 33  SLKFSTGISNFANLSNGFSLKSPINPGFLFKSRPFTVQARAAAEKTVHDFTVKDIDGKDV 92

Query: 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161
            L+KFKGKV+LIVNVASRCGLT SNYSELSHLYEKYKTQGFEILAFPCNQFG QEPGSN 
Sbjct: 93  ALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNS 152

Query: 162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK 221
           EIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y+FLKS+AGGFLG L+KWNFEKFL+DK GK
Sbjct: 153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGK 212

Query: 222 VIERYPPTTSPFQIEKDIQKLVVA 245
           V+ERYPPTTSPFQIEKDIQKL+ A
Sbjct: 213 VVERYPPTTSPFQIEKDIQKLLAA 236

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O48646|GPX6_ARATH Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 151/197 (76%), Gaps = 5/197 (2%)

Query: 49  SAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATE--KSLYDFTVKDIDGKDVPLSKF 106
           SAKP F  H + S   +  G  + R     H+ AA+   KSLYDFTVKD  G DV LS +
Sbjct: 35  SAKPLFNSHRIISLPISTTGAKLSRSE---HSMAASSEPKSLYDFTVKDAKGNDVDLSIY 91

Query: 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF 166
           KGKVLLIVNVAS+CGLT SNY+EL+ LYEKYK  GFEILAFPCNQFG QEPG+N EI +F
Sbjct: 92  KGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQF 151

Query: 167 ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226
           ACTRFKAE+PIFDKVDVNG   APVY+FLKSS GG  GD +KWNF KFLVDK+G V++R+
Sbjct: 152 ACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRF 211

Query: 227 PPTTSPFQIEKDIQKLV 243
            PTTSP  IEKD++KL+
Sbjct: 212 APTTSPLSIEKDVKKLL 228

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q06652|GPX4_CITSI Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1

 Score =  254 bits (650), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 136/162 (83%)

Query: 82  AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG 141
           + ++ S++DFTVKD  G+DV LS +KGK+LLIVNVAS+CGLT SNY+ELS LY+KYK QG
Sbjct: 3   SQSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG 62

Query: 142 FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG 201
            EILAFPCNQFG QEPG N +I+EFACTRFKAEFPIFDKVDVNG N AP+Y+ LKSS GG
Sbjct: 63  LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG 122

Query: 202 FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
             GD +KWNF KFLVDK G V+ERY PTTSP  IEKDI+KL+
Sbjct: 123 LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 164

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Citrus sinensis (taxid: 2711)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9LEF0|GPX4_MESCR Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/158 (73%), Positives = 133/158 (84%)

Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           KS++DF VKD  G DV LS +KGKVLLIVNVAS+CGLT SNY EL+ LYE+YK +G EIL
Sbjct: 10  KSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEIL 69

Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
           AFPCNQFG QEPG N +I EFACTRFKAEFPIFDKVDVNG N APVY++LKSS GG  GD
Sbjct: 70  AFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGD 129

Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +KWNF KFLVD++GKV++RY PTTSP  IEKDI+KL+
Sbjct: 130 GIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLI 167

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O23814|GPX4_SPIOL Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1

 Score =  246 bits (629), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 136/163 (83%)

Query: 81  TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140
           ++A  KS+++F V+D  G DV LS +KGKVLLIVNVAS+CGLT SNY+E++ LYEKY+  
Sbjct: 5   SSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYREL 64

Query: 141 GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG 200
           G EILAFPCNQFG QEPGSN E+ EFACTRFKAE+PIFDKVDVNG N AP+Y+FLKSS G
Sbjct: 65  GLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKG 124

Query: 201 GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           G  GD +KWNF KFLVDK+G V++RY PTTSP  IEKD++KL+
Sbjct: 125 GLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLL 167

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P30708|GPX4_NICSY Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 133/158 (84%)

Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EIL
Sbjct: 9   QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEIL 68

Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
           AFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD
Sbjct: 69  AFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGD 128

Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +KWNF KFLVDK G V++RY PTT+P  +EKDI+KL+
Sbjct: 129 SIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Nicotiana sylvestris (taxid: 4096)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9FXS3|GPX4_TOBAC Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 133/158 (84%)

Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++++ +Y+KYK QG EIL
Sbjct: 9   QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEIL 68

Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
           AFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD
Sbjct: 69  AFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGD 128

Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +KWNF KFLVDK G V++RY PTT+P  +EKDI+KL+
Sbjct: 129 SIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24031|GPX4_SOLLC Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 135/158 (85%)

Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           +S+YDFTVKD  GKDV LS +KGKVL+IVNVAS+CGLT SNY++++ LY+KYK QG EIL
Sbjct: 9   QSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEIL 68

Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
           AFPCNQFGGQEPG+  +I++  CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD
Sbjct: 69  AFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGD 128

Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +KWNF KFL+DK G V++RY PTTSP  +EKDI+KL+
Sbjct: 129 GIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLL 166

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
284433780	234	putative glutathione peroxidase [Jatroph	0.946	0.991	0.746	1e-96
449455505	241	PREDICTED: phospholipid hydroperoxide gl	0.967	0.983	0.75	3e-96
118489959	232	unknown [Populus trichocarpa x Populus d	0.832	0.879	0.843	4e-96
449515073	241	PREDICTED: phospholipid hydroperoxide gl	0.967	0.983	0.745	2e-95
225430510	246	PREDICTED: phospholipid hydroperoxide gl	0.983	0.979	0.737	4e-94
390985896	246	glutathione peroxidase [Vitis pseudoreti	0.983	0.979	0.729	2e-93
147784563	246	hypothetical protein VITISV_008662 [Viti	0.983	0.979	0.733	3e-93
255548716	265	glutathione peroxidase, putative [Ricinu	0.926	0.856	0.767	5e-93
296082147	207	unnamed protein product [Vitis vinifera]	0.832	0.985	0.814	9e-92
351723235	234	uncharacterized protein LOC100305775 [Gl	0.942	0.987	0.731	4e-91

>gi|284433780|gb|ADB85096.1| putative glutathione peroxidase [Jatropha curcas]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/233 (74%), Positives = 196/233 (84%), Gaps = 1/233 (0%)

Query: 13  SSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVK 72
           S P +   Q +  P + + S A ++    S+K+S G +K  FLQHG   Q  N PGF  K
Sbjct: 3   SVPFQSLKQFQINPKSCSFSPAMAFC-IPSMKTSFGPSKSAFLQHGFSLQLPNFPGFLSK 61

Query: 73  RRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSH 132
             SF V+A AATEK+++D+TVKDIDG  VPLSKFKGKVLLIVNVAS+CGLT SNY+ELSH
Sbjct: 62  THSFAVYARAATEKTIHDYTVKDIDGNGVPLSKFKGKVLLIVNVASKCGLTASNYTELSH 121

Query: 133 LYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVY 192
           +YEKYKTQGFEILAFPCNQFGGQEPGSNPEIK+FACTR+KAEFPIFDKVDVNGPNTAPVY
Sbjct: 122 IYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRYKAEFPIFDKVDVNGPNTAPVY 181

Query: 193 QFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 245
           QFLKSSAGGFLGDL+KWNFEKFLVDKNGKV+ERYPPTTSPFQIEKDIQKL+ A
Sbjct: 182 QFLKSSAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 234

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455505|ref|XP_004145493.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic-like [Cucumis sativus]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 183/244 (75%), Positives = 202/244 (82%), Gaps = 7/244 (2%)

Query: 6   MPFSAAFSSPLRHFTQIKT--CP--AAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFS 61
           M  SA F +P+   ++  T  C   A+W S MAA+  P  S+KSS+ ++K  FL+H L  
Sbjct: 1   MSLSATFPAPIYVCSKTSTRFCYSFASWPS-MAANLIP--SLKSSLAASKSPFLRHNLTM 57

Query: 62  QSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG 121
           QSS   G F K R  GV A AATEKS+YDFTVKDIDGK V L+KFKGKVLLIVNVASRCG
Sbjct: 58  QSSISRGVFSKARFSGVSARAATEKSIYDFTVKDIDGKGVSLNKFKGKVLLIVNVASRCG 117

Query: 122 LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
           LT +NYSELSHLYEKYK QG E+LAFPCNQFGGQEPGSNPEIK+FAC+RFKAEFPIFDKV
Sbjct: 118 LTTANYSELSHLYEKYKAQGLEVLAFPCNQFGGQEPGSNPEIKQFACSRFKAEFPIFDKV 177

Query: 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
           DVNGPNTAPVYQFLKSSAGGFLGDL+KWNFEKFLVDKNGKV+ERYPPTTSPFQIEKDIQK
Sbjct: 178 DVNGPNTAPVYQFLKSSAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 237

Query: 242 LVVA 245
           LV A
Sbjct: 238 LVAA 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489959|gb|ABK96776.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 172/204 (84%), Positives = 186/204 (91%)

Query: 42  SIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDV 101
           SIKSS+G +K  FLQ G   QS NLPGF  K RSFGV A AATEKS++DFTVKDI+GKDV
Sbjct: 29  SIKSSLGPSKSAFLQRGFSLQSPNLPGFASKARSFGVFARAATEKSVHDFTVKDINGKDV 88

Query: 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161
            LSKFKGK LLIVNVAS+CGLT SNYSEL+H+YEKYKTQGFEILAFPCNQFGGQEPGSNP
Sbjct: 89  ALSKFKGKALLIVNVASKCGLTSSNYSELTHIYEKYKTQGFEILAFPCNQFGGQEPGSNP 148

Query: 162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK 221
           EIK+FACTR+KAEFPIFDKVDVNGP+TAPVYQFLKSSAGGFLGDL+KWNFEKFLVDKNGK
Sbjct: 149 EIKQFACTRYKAEFPIFDKVDVNGPSTAPVYQFLKSSAGGFLGDLIKWNFEKFLVDKNGK 208

Query: 222 VIERYPPTTSPFQIEKDIQKLVVA 245
           V+ERY PTTSPFQIEKDIQKL+ A
Sbjct: 209 VVERYQPTTSPFQIEKDIQKLLAA 232

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515073|ref|XP_004164574.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic-like [Cucumis sativus]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/244 (74%), Positives = 201/244 (82%), Gaps = 7/244 (2%)

Query: 6   MPFSAAFSSPLRHFTQIKT--CP--AAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFS 61
           M  SA F +P+   ++  T  C   A+W S MAA+  P  S+KSS+ ++K  FL+H L  
Sbjct: 1   MSLSATFPAPIYVCSKTSTRFCYSFASWPS-MAANLIP--SLKSSLAASKSPFLRHNLTM 57

Query: 62  QSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG 121
           QSS   G F K R  GV A AATEKS+YDFTVKDIDGK V L+KFKGKVLLIVNVASRCG
Sbjct: 58  QSSISRGVFSKARFSGVSARAATEKSIYDFTVKDIDGKGVSLNKFKGKVLLIVNVASRCG 117

Query: 122 LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
           LT +NYSELSHLYEKYK QG E+LAFPCNQFGGQEPGSNPEIK+FAC+RFKAEFPIFDKV
Sbjct: 118 LTTANYSELSHLYEKYKAQGLEVLAFPCNQFGGQEPGSNPEIKQFACSRFKAEFPIFDKV 177

Query: 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
           DVNGPNTAPVYQFLKSSAGGFLG L+KWNFEKFLVDKNGKV+ERYPPTTSPFQIEKDIQK
Sbjct: 178 DVNGPNTAPVYQFLKSSAGGFLGGLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 237

Query: 242 LVVA 245
           LV A
Sbjct: 238 LVAA 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430510|ref|XP_002285564.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Vitis vinifera]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 180/244 (73%), Positives = 200/244 (81%), Gaps = 3/244 (1%)

Query: 5   SMPFSAAFSSPLRHFTQIKTCPA-AWASSMAASWT-PTNSIKSSIGSAKPGFLQHGLFSQ 62
           SMPFS +F++    F Q K     +W SS   S      S KSS G++   FL+ G    
Sbjct: 3   SMPFSVSFTAHSPGFAQTKAAHHHSWPSSPYPSMAFLMPSTKSSFGASNSAFLRTGFSLC 62

Query: 63  SSNLPGFFVKRR-SFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG 121
           SS +PG  +K R S GV+A AATEKSLYD+TVKDI+ KDVPLSKFKGKVLLIVNVAS+CG
Sbjct: 63  SSEIPGVSLKSRFSGGVYARAATEKSLYDYTVKDIEKKDVPLSKFKGKVLLIVNVASKCG 122

Query: 122 LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
           LT SNYSELSH+YEKYKTQGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKV
Sbjct: 123 LTASNYSELSHIYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKV 182

Query: 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
           DVNGP TAPVYQFLKS+AGGFLGDL+KWNFEKFLVDKNGKV+ERY PTTSPFQIEKDIQ+
Sbjct: 183 DVNGPTTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYQPTTSPFQIEKDIQR 242

Query: 242 LVVA 245
           L+ A
Sbjct: 243 LLAA 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390985896|gb|AFM35694.1| glutathione peroxidase [Vitis pseudoreticulata]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/244 (72%), Positives = 199/244 (81%), Gaps = 3/244 (1%)

Query: 5   SMPFSAAFSSPLRHFTQIKTCPA-AWASSMAASWT-PTNSIKSSIGSAKPGFLQHGLFSQ 62
           SMPFS +F++    F Q K     +W SS   S      S KSS G++   FL+ G    
Sbjct: 3   SMPFSVSFTAHSPGFAQTKAAHHHSWPSSPYPSMAFLMPSTKSSFGASNSAFLRTGFSLC 62

Query: 63  SSNLPGFFVKRR-SFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG 121
           SS +PG  +K R S GV+A AATEKSLYD+TVKD++ KD PLSKFKGKVLLIVNVAS+CG
Sbjct: 63  SSEIPGVSLKSRFSGGVYARAATEKSLYDYTVKDVEKKDAPLSKFKGKVLLIVNVASKCG 122

Query: 122 LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
           LT SNYSELSH+YEKYKTQGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKV
Sbjct: 123 LTASNYSELSHIYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKV 182

Query: 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
           DVNGP TAPVYQFLKS+AGGFLGDL+KWNFEKFLVDKNGKV+ERY PTTSPFQIEKDIQ+
Sbjct: 183 DVNGPTTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYQPTTSPFQIEKDIQR 242

Query: 242 LVVA 245
           L+ A
Sbjct: 243 LLAA 246

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784563|emb|CAN70486.1| hypothetical protein VITISV_008662 [Vitis vinifera]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/244 (73%), Positives = 199/244 (81%), Gaps = 3/244 (1%)

Query: 5   SMPFSAAFSSPLRHFTQIKTCPA-AWASSMAASWT-PTNSIKSSIGSAKPGFLQHGLFSQ 62
           SMPFS +F++    F Q K     +W SS   S      S KSS G++   FL+ G    
Sbjct: 3   SMPFSVSFTAHSPGFAQTKAAHHHSWPSSPYPSMAFLMPSTKSSFGASNSAFLRTGFSLC 62

Query: 63  SSNLPGFFVKRR-SFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG 121
           SS +P   +K R S GV+A AATEKSLYD+TVKDI+ KDVPLSKFKGKVLLIVNVAS+CG
Sbjct: 63  SSEIPXVSLKSRFSGGVYARAATEKSLYDYTVKDIEKKDVPLSKFKGKVLLIVNVASKCG 122

Query: 122 LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181
           LT SNYSELSH+YEKYKTQGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKV
Sbjct: 123 LTASNYSELSHIYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKV 182

Query: 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
           DVNGP TAPVYQFLKS+AGGFLGDL+KWNFEKFLVDKNGKV+ERY PTTSPFQIEKDIQ+
Sbjct: 183 DVNGPTTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYQPTTSPFQIEKDIQR 242

Query: 242 LVVA 245
           L+ A
Sbjct: 243 LLAA 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548716|ref|XP_002515414.1| glutathione peroxidase, putative [Ricinus communis] gi|223545358|gb|EEF46863.1| glutathione peroxidase, putative [Ricinus communis]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 178/232 (76%), Positives = 197/232 (84%), Gaps = 5/232 (2%)

Query: 5   SMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSS 64
           S+P S+ F S L HF +I     + + SMA  + P  S+KSS+GS+K  FLQHG   Q +
Sbjct: 3   SVPLSSPFQS-LTHF-KINPNSVSSSPSMAF-FVP--SVKSSLGSSKSAFLQHGFSLQLA 57

Query: 65  NLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTP 124
              GFF K RSF V A AATEKS++++TVKDIDGKDVPLSKFKGK LLIVNVAS+CGLT 
Sbjct: 58  TSSGFFSKARSFCVSARAATEKSIHEYTVKDIDGKDVPLSKFKGKALLIVNVASKCGLTS 117

Query: 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184
           SNY+ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK FACTR+KAEFPIFDKVDVN
Sbjct: 118 SNYTELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKNFACTRYKAEFPIFDKVDVN 177

Query: 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236
           GPNTAPVYQFLKSSAGGFLGDL+KWNFEKFLVDKNGKV+ERYPPTTSPFQIE
Sbjct: 178 GPNTAPVYQFLKSSAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIE 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082147|emb|CBI21152.3| unnamed protein product [Vitis vinifera]

 Score =  342 bits (877), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 167/205 (81%), Positives = 183/205 (89%), Gaps = 1/205 (0%)

Query: 42  SIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRR-SFGVHATAATEKSLYDFTVKDIDGKD 100
           S KSS G++   FL+ G    SS +PG  +K R S GV+A AATEKSLYD+TVKDI+ KD
Sbjct: 3   STKSSFGASNSAFLRTGFSLCSSEIPGVSLKSRFSGGVYARAATEKSLYDYTVKDIEKKD 62

Query: 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160
           VPLSKFKGKVLLIVNVAS+CGLT SNYSELSH+YEKYKTQGFEILAFPCNQFGGQEPGSN
Sbjct: 63  VPLSKFKGKVLLIVNVASKCGLTASNYSELSHIYEKYKTQGFEILAFPCNQFGGQEPGSN 122

Query: 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG 220
           PEIK+FACTRFKAEFPIFDKVDVNGP TAPVYQFLKS+AGGFLGDL+KWNFEKFLVDKNG
Sbjct: 123 PEIKQFACTRFKAEFPIFDKVDVNGPTTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNG 182

Query: 221 KVIERYPPTTSPFQIEKDIQKLVVA 245
           KV+ERY PTTSPFQIEKDIQ+L+ A
Sbjct: 183 KVVERYQPTTSPFQIEKDIQRLLAA 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723235|ref|NP_001236504.1| uncharacterized protein LOC100305775 [Glycine max] gi|255626577|gb|ACU13633.1| unknown [Glycine max]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/242 (73%), Positives = 189/242 (78%), Gaps = 11/242 (4%)

Query: 5   SMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQ-S 63
           SM  S AF +PL  FTQ +T P+           P   IKSS  S+K  F    L  Q S
Sbjct: 3   SMASSTAFFTPLHDFTQARTTPSP----------PLPFIKSSFASSKSTFFHPALSLQTS 52

Query: 64  SNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLT 123
           SN P  F K + F VHA AATEK++YDFTVKDID KDV LSKFKGKVLLIVNVASRCGLT
Sbjct: 53  SNFPRLFGKPKFFSVHARAATEKTIYDFTVKDIDRKDVSLSKFKGKVLLIVNVASRCGLT 112

Query: 124 PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183
            SNYSELS LYEKYK QG EILAFPCNQFG QEPGSN +IK+FA TR+KAEFPIFDKVDV
Sbjct: 113 SSNYSELSRLYEKYKNQGLEILAFPCNQFGMQEPGSNEDIKQFAYTRYKAEFPIFDKVDV 172

Query: 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           NGP T PVYQFLKSSAGGFLGDL+KWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL+
Sbjct: 173 NGPFTTPVYQFLKSSAGGFLGDLIKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLL 232

Query: 244 VA 245
            A
Sbjct: 233 AA 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2116782	233	GPX7 "glutathione peroxidase 7	0.946	0.995	0.688	1.7e-82
TAIR|locus:2040179	236	GPX1 "glutathione peroxidase 1	0.832	0.864	0.769	2.8e-82
TAIR|locus:2139712	232	GPX6 "glutathione peroxidase 6	0.828	0.875	0.632	3.2e-65
TAIR|locus:2058233	206	GPX3 "glutathione peroxidase 3	0.722	0.859	0.644	3.9e-60
TAIR|locus:2065928	169	GPX2 "glutathione peroxidase 2	0.632	0.917	0.709	1.9e-58
TAIR|locus:2099252	173	GPX5 "glutathione peroxidase 5	0.661	0.936	0.623	8.9e-54
TAIR|locus:2031331	167	GPX8 "AT1G63460" [Arabidopsis	0.665	0.976	0.579	7.2e-52
TAIR|locus:2039346	170	GPX4 "glutathione peroxidase 4	0.661	0.952	0.604	1.1e-50
WB|WBGene00011045	163	gpx-2 [Caenorhabditis elegans	0.648	0.975	0.553	7.9e-46
WB|WBGene00009165	163	gpx-1 [Caenorhabditis elegans	0.632	0.950	0.548	3.4e-45

TAIR|locus:2116782 GPX7 "glutathione peroxidase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 166/241 (68%), Positives = 189/241 (78%)

Query:     6 MPFS-AAFSSPLRHFTQIKTCPXXXXXXXXXXXTPTNSIKSSIGSAKPGFLQHGLFSQSS 64
             M FS A+FS+P   F      P            P  S++ S  ++K     +G+  +SS
Sbjct:     1 MAFSYASFSTPFNGFAA-NPSPITSAFLG-----P--SLRFSTRTSKTRNPSNGVSVKSS 52

Query:    65 NLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTP 124
             N   F VK ++F V+A AA EKS++DFTVKDIDG DV L KFKGK LLIVNVASRCGLT 
Sbjct:    53 NSHRFLVKSKNFSVYARAAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTS 112

Query:   125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184
             SNYSELS LYEKYK QGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKVDVN
Sbjct:   113 SNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN 172

Query:   185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV 244
             GP+TAP+Y+FLKS+AGGFLGD++KWNFEKFLVDK GKV+ERYPPTTSPFQIEKDIQKL+ 
Sbjct:   173 GPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIEKDIQKLLA 232

Query:   245 A 245
             A
Sbjct:   233 A 233

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2040179 GPX1 "glutathione peroxidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 157/204 (76%), Positives = 175/204 (85%)

Query:    42 SIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDV 101
             S+K S G +    L +G   +S   PGF  K R F V A AA EK+++DFTVKDIDGKDV
Sbjct:    33 SLKFSTGISNFANLSNGFSLKSPINPGFLFKSRPFTVQARAAAEKTVHDFTVKDIDGKDV 92

Query:   102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161
              L+KFKGKV+LIVNVASRCGLT SNYSELSHLYEKYKTQGFEILAFPCNQFG QEPGSN 
Sbjct:    93 ALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNS 152

Query:   162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK 221
             EIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y+FLKS+AGGFLG L+KWNFEKFL+DK GK
Sbjct:   153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGK 212

Query:   222 VIERYPPTTSPFQIEKDIQKLVVA 245
             V+ERYPPTTSPFQIEKDIQKL+ A
Sbjct:   213 VVERYPPTTSPFQIEKDIQKLLAA 236

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2139712 GPX6 "glutathione peroxidase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 129/204 (63%), Positives = 153/204 (75%)

Query:    40 TNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGK 99
             ++S      SAKP F  H + S   +  G  + R    + A ++  KSLYDFTVKD  G 
Sbjct:    26 SSSSSKRFDSAKPLFNSHRIISLPISTTGAKLSRSEHSM-AASSEPKSLYDFTVKDAKGN 84

Query:   100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159
             DV LS +KGKVLLIVNVAS+CGLT SNY+EL+ LYEKYK  GFEILAFPCNQFG QEPG+
Sbjct:    85 DVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGT 144

Query:   160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN 219
             N EI +FACTRFKAE+PIFDKVDVNG   APVY+FLKSS GG  GD +KWNF KFLVDK+
Sbjct:   145 NEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKD 204

Query:   220 GKVIERYPPTTSPFQIEKDIQKLV 243
             G V++R+ PTTSP  IEKD++KL+
Sbjct:   205 GNVVDRFAPTTSPLSIEKDVKKLL 228

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2058233 GPX3 "glutathione peroxidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 114/177 (64%), Positives = 134/177 (75%)

Query:    69 FFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYS 128
             F++ R          +  S+Y+ +VKDI+GKDV LSKF GKVLLIVNVAS+CGLT  NY 
Sbjct:    29 FYLYRYPSSPSTVEQSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYK 88

Query:   129 ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188
             E++ LY KYKTQGFEILAFPCNQFG QEPGSN EIKE  C  FKAEFPIFDK++VNG NT
Sbjct:    89 EMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNT 148

Query:   189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 245
              P+Y FLK   GG  GD +KWNF KFLVD+ G V++RY PTTSP +IEKDI KL+ +
Sbjct:   149 CPLYNFLKEQKGGLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEKDIVKLLAS 205

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0042631 "cellular response to water deprivation" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2065928 GPX2 "glutathione peroxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 110/155 (70%), Positives = 128/155 (82%)

Query:    86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
             KS+YDFTVKDI G DV L ++KGK LL+VNVAS+CGLT +NY EL+ LYEKYK QG EIL
Sbjct:     7 KSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEIL 66

Query:   146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
             AFPCNQF GQEPG+N EI++  CTRFKAEFPIFDKVDVNG NTAP+Y++LK+  GG L D
Sbjct:    67 AFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLID 126

Query:   206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240
              +KWNF KFLV  +GKV++RY P TSP Q EKDIQ
Sbjct:   127 AIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDIQ 161

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=NAS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2099252 GPX5 "glutathione peroxidase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 101/162 (62%), Positives = 128/162 (79%)

Query:    80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
             +++ +EKS++ FTVKD  GK+V LS ++GKVLL+VNVAS+CG T SNY++L+ LY KYK 
Sbjct:     6 SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKD 65

Query:   140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
             QGF +LAFPCNQF  QEPG++ E  +FACTRFKAE+P+F KV VNG N APVY+FLKS  
Sbjct:    66 QGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKK 125

Query:   200 GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
               FLG  +KWNF KFLV K+G+VI+RY  T SP  I+KDI+K
Sbjct:   126 PSFLGSRIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIEK 167

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2031331 GPX8 "AT1G63460" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 95/164 (57%), Positives = 129/164 (78%)

Query:    80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
             AT   E S+Y+ +++D  G ++ LS++K KVLLIVNVAS+CG+T SNY+EL+ LY +YK 
Sbjct:     2 ATKEPE-SVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKD 60

Query:   140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
             +G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIF+K++VNG N +P+Y+FLK   
Sbjct:    61 KGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGK 120

Query:   200 GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
              G  GD ++WNF KFLVDKNG+ ++RY PTTSP  +E DI+ L+
Sbjct:   121 WGIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLL 164

GO:0004602 "glutathione peroxidase activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0004601 "peroxidase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2039346 GPX4 "glutathione peroxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 98/162 (60%), Positives = 124/162 (76%)

Query:    80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
             + +  E+S++ FTVKD  GKD+ +S ++GKVLLIVNVAS+CG T +NY++L+ LY KYK 
Sbjct:     4 SASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKD 63

Query:   140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
             Q FEILAFPCNQF  QEPG++ E  EFAC RFKAE+P+F KV VNG N AP+Y+FLK+S 
Sbjct:    64 QDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASK 123

Query:   200 GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
               FLG  +KWNF KFLV K+G VI+RY    +P  IEKDI+K
Sbjct:   124 PTFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEKDIKK 165

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=NAS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

WB|WBGene00011045 gpx-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 88/159 (55%), Positives = 115/159 (72%)

Query:    87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
             S++  TVK+  G+D PLS ++GKVL+IVNVAS+CGLT SNY++   L + YK  G E+LA
Sbjct:     3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLA 62

Query:   147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
             FPCNQFGGQEP    +I  F   +FK E  +F K+DVNG NTAP+Y+FLK   GGFL D 
Sbjct:    63 FPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDA 122

Query:   207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 245
             +KWNF KFLV ++G VI+R+ PTT P  ++KDI+  + A
Sbjct:   123 IKWNFTKFLVGRDGHVIKRFSPTTEPKDMKKDIEAALQA 161

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

WB|WBGene00009165 gpx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 85/155 (54%), Positives = 115/155 (74%)

Query:    87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
             S+YDF VK+ +G DV LS +KGKVL+IVNVAS+CGLT  NY++L  L + YK  G E+LA
Sbjct:     3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLA 62

Query:   147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
             FPCNQF GQEP    +I+ F   +FK E  +F K+DVNG   +P+++FLK+  GGF+ D 
Sbjct:    63 FPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDA 122

Query:   207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 241
             +KWNF KFLV ++GK+I+R+ PTT P  +EKDI++
Sbjct:   123 IKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKE 157

GO:0055114 "oxidation-reduction process" evidence=IEA;IMP

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0090087 "regulation of peptide transport" evidence=IMP

GO:0047066 "phospholipid-hydroperoxide glutathione peroxidase activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z9N7	BSAA_BACHD	1, ., -, ., -, ., -	0.5031	0.6367	0.9936	yes	no
P38143	GPX2_YEAST	1, ., 1, 1, ., 1, ., 9	0.5316	0.6367	0.9629	yes	no
O24296	GPX1_PEA	1, ., 1, 1, ., 1, ., 1, 2	0.7020	0.9387	0.9745	N/A	no
Q9CFV1	GPO_LACLA	1, ., 1, 1, ., 1, ., 9	0.5095	0.6367	0.9936	yes	no
Q9FXS3	GPX4_TOBAC	1, ., 1, 1, ., 1, ., 1, 2	0.7025	0.6448	0.9349	N/A	no
Q9LEF0	GPX4_MESCR	1, ., 1, 1, ., 1, ., 1, 2	0.7341	0.6448	0.9294	N/A	no
O23968	GPX4_HELAN	1, ., 1, 1, ., 1, ., 1, 2	0.7320	0.6244	0.85	N/A	no
Q9SZ54	GPX7_ARATH	1, ., 1, 1, ., 1, ., 9	0.6929	0.9469	0.9957	yes	no
O24031	GPX4_SOLLC	1, ., 1, 1, ., 1, ., 1, 2	0.7025	0.6448	0.9349	N/A	no
O62327	GPX2_CAEEL	1, ., 1, 1, ., 1, ., 9	0.5534	0.6489	0.9754	yes	no
P52032	GPX1_ARATH	1, ., 1, 1, ., 1, ., 1, 2	0.7696	0.8326	0.8644	no	no
P52035	BSAA_BACSU	1, ., -, ., -, ., -	0.5063	0.6367	0.975	yes	no
P30708	GPX4_NICSY	1, ., 1, 1, ., 1, ., 1, 2	0.7088	0.6448	0.9349	N/A	no
O59858	GPX1_SCHPO	1, ., 1, 1, ., 1, ., 9	0.5192	0.6326	0.9810	yes	no
O49069	GPX4_GOSHI	1, ., 1, 1, ., 1, ., 1, 2	0.7044	0.6448	0.9294	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.11.1	0.983
4th Layer	1.11.1.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032791001	RecName- Full=Glutathione peroxidase; (246 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016630001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (536 aa)						•	•		0.913
	GSVIVG00022884001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (510 aa)						•	•		0.908
	GSVIVG00036967001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (115 aa)						•			0.899
	GSVIVG00031741001	SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (223 aa)						•			0.899
	GSVIVG00029492001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (305 aa)						•			0.899
	GSVIVG00028454001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (227 aa)						•			0.899
	GSVIVG00028452001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (223 aa)						•			0.899
	GSVIVG00027957001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (214 aa)						•			0.899
	GSVIVG00027954001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (214 aa)						•			0.899
	GSVIVG00025776001	SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_35, whole genome shot [...] (220 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
PLN02399	236	PLN02399, PLN02399, phospholipid hydroperoxide glu	1e-137
cd00340	152	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxid	2e-94
PLN02412	167	PLN02412, PLN02412, probable glutathione peroxidas	5e-93
COG0386	162	COG0386, BtuE, Glutathione peroxidase [Posttransla	4e-85
PTZ00256	183	PTZ00256, PTZ00256, glutathione peroxidase; Provis	5e-67
pfam00255	108	pfam00255, GSHPx, Glutathione peroxidase	5e-58
PRK10606	183	PRK10606, btuE, putative glutathione peroxidase; P	3e-57
PTZ00056	199	PTZ00056, PTZ00056, glutathione peroxidase; Provis	3e-49
TIGR02540	153	TIGR02540, gpx7, putative glutathione peroxidase G	4e-45
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	8e-09
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	6e-07
pfam08534	142	pfam08534, Redoxin, Redoxin	9e-07
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	3e-05
cd02969	171	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 fam	0.002

>gnl|CDD|178021 PLN02399, PLN02399, phospholipid hydroperoxide glutathione peroxidase

 Score =  384 bits (988), Expect = e-137
 Identities = 175/237 (73%), Positives = 197/237 (83%), Gaps = 1/237 (0%)

Query: 9   SAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPG 68
             + ++    +   KT   +     + ++    S+KSS G +K  FL +G   +S N PG
Sbjct: 1   MVSLTTSSSSYASFKTVFNSSPPPPSMAFLVP-SLKSSTGISKSAFLSNGFSLKSPNSPG 59

Query: 69  FFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYS 128
           F  K RSFGV+A AATEKS++DFTVKDIDGKDV LSKFKGKVLLIVNVAS+CGLT SNYS
Sbjct: 60  FLSKSRSFGVYARAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYS 119

Query: 129 ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188
           ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKVDVNGP+T
Sbjct: 120 ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPST 179

Query: 189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 245
           APVYQFLKS+AGGFLGDL+KWNFEKFLVDKNGKV+ERYPPTTSPFQIEKDIQKL+ A
Sbjct: 180 APVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 236

Length = 236

>gnl|CDD|238207 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

 Score =  273 bits (700), Expect = 2e-94
 Identities = 97/153 (63%), Positives = 119/153 (77%), Gaps = 1/153 (0%)

Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S+YDF+VKDIDG+ V LSK+KGKVLLIVNVAS+CG TP  Y  L  LYEKYK +G  +L 
Sbjct: 1   SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCGFTP-QYEGLEALYEKYKDRGLVVLG 59

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
           FPCNQFGGQEPGSN EIKEF  T +   FP+F K+DVNG N  P+Y++LK  A G LG  
Sbjct: 60  FPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKD 119

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239
           +KWNF KFLVD++G+V++R+ PTT P ++EKDI
Sbjct: 120 IKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. Length = 152

>gnl|CDD|166053 PLN02412, PLN02412, probable glutathione peroxidase

 Score =  270 bits (691), Expect = 5e-93
 Identities = 118/161 (73%), Positives = 136/161 (84%)

Query: 83  ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF 142
            + KS+YDFTVKDI G DV L+++KGKVLLIVNVAS+CGLT SNY EL+ LYEKYK QGF
Sbjct: 4   ESPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGF 63

Query: 143 EILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGF 202
           EILAFPCNQF GQEPGSN EI++  CTRFKAEFPIFDKVDVNG NTAP+Y++LK+  GG 
Sbjct: 64  EILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGL 123

Query: 203 LGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            GD +KWNF KFLV K GKV++RY PTTSP +IEKDIQ L+
Sbjct: 124 FGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164

Length = 167

>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

 Score =  249 bits (639), Expect = 4e-85
 Identities = 90/157 (57%), Positives = 113/157 (71%), Gaps = 2/157 (1%)

Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S+YDF+VKDIDG+ V LS +KGKVLLIVN AS+CG TP  Y  L  LY+KYK +GFE+L 
Sbjct: 4   SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLG 62

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG-FLGD 205
           FPCNQFGGQEPGS+ EI +F    +   FP+F K+DVNG N  P+Y++LK    G   G 
Sbjct: 63  FPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGK 122

Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
            +KWNF KFLVD++G V++R+ P T P  IE  I+KL
Sbjct: 123 DIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKL 159

Length = 162

>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional

 Score =  204 bits (522), Expect = 5e-67
 Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 6/165 (3%)

Query: 84  TEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF 142
             KS ++F   DIDG+ V LSKFKG K +++VNVA +CGLT  +Y++L  LY++YK+QG 
Sbjct: 16  PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGL 75

Query: 143 EILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGF 202
           EILAFPCNQF  QEP   PEIKE+   +F  +FP+F K++VNG NT  +Y++L+ ++  F
Sbjct: 76  EILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELF 135

Query: 203 LGDL-----VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
             +      + WNF KFL+D  GKV++ + P  +P ++ +DI+KL
Sbjct: 136 QNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKL 180

Length = 183

>gnl|CDD|201117 pfam00255, GSHPx, Glutathione peroxidase

 Score =  179 bits (456), Expect = 5e-58
 Identities = 68/108 (62%), Positives = 83/108 (76%), Gaps = 1/108 (0%)

Query: 89  YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148
           YDF+ KDI+G+ VPL +++GKVLLIVNVAS+CGLTP  Y+EL+ L E+YK +G  IL FP
Sbjct: 2   YDFSAKDINGEPVPLDQYRGKVLLIVNVASKCGLTP-QYTELNELQERYKDRGLVILGFP 60

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196
           CNQFG QEPGSN EIK F    +   FPIF K+DVNG N  P+Y+FLK
Sbjct: 61  CNQFGKQEPGSNEEIKYFRPGGYGVTFPIFSKIDVNGENAHPLYKFLK 108

Length = 108

>gnl|CDD|182585 PRK10606, btuE, putative glutathione peroxidase; Provisional

 Score =  179 bits (457), Expect = 3e-57
 Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 21/166 (12%)

Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S+    V  IDG+   L K+ G VLLIVNVAS+CGLTP  Y +L ++ + +  QGF +L 
Sbjct: 4   SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLG 62

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA------- 199
           FPCNQF GQEPGS+ EIK +  T +   FP+F K++VNG    P+YQ L ++A       
Sbjct: 63  FPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPE 122

Query: 200 -GGFLGDLVK------------WNFEKFLVDKNGKVIERYPPTTSP 232
             GF   +V             WNFEKFLV ++G+VI+R+ P  +P
Sbjct: 123 ESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTP 168

Length = 183

>gnl|CDD|240248 PTZ00056, PTZ00056, glutathione peroxidase; Provisional

 Score =  160 bits (405), Expect = 3e-49
 Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 69  FFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYS 128
           FF K       +     KS+YD+TVK ++G  VP+S  K KVL+I N AS+CGLT  +  
Sbjct: 4   FFKKITV----SKDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVD 59

Query: 129 ELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188
           +++ L+  +   G EILAFP +QF  QE  +  +I++F   + K ++  F+ ++VNG NT
Sbjct: 60  QMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFN-DKNKIKYNFFEPIEVNGENT 118

Query: 189 APVYQFLKSSAGGFL---GDL--VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
             +++FLK++        G L  + WNF KFLV+K+G V+  + P T P ++EK I +L+
Sbjct: 119 HELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178

Length = 199

>gnl|CDD|131592 TIGR02540, gpx7, putative glutathione peroxidase Gpx7

 Score =  148 bits (374), Expect = 4e-45
 Identities = 64/157 (40%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
             Y F VKD  G+ V L K++GKV L+VNVAS CG T  NY  L  L+ +     F +LA
Sbjct: 1   DFYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLA 60

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
           FPCNQFG  EP S+ EI+ FA   +   FP+F K+ + G    P ++FL  S+       
Sbjct: 61  FPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSS----KKE 116

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +WNF K+LV+  G+V++ + P     +I  +I  LV
Sbjct: 117 PRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. Length = 153

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 25/138 (18%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148
           DF++ D+DGK V LS  KGKV+L VN  AS C    +   EL  L ++YK  G E++   
Sbjct: 1   DFSLPDLDGKPVSLSDLKGKVVL-VNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGV- 58

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK 208
                  +      +K F   ++   FP+   +D +G   A  Y              V+
Sbjct: 59  -----NVDDDDPAAVKAFL-KKYGITFPVL--LDPDG-ELAKAYG-------------VR 96

Query: 209 WNFEKFLVDKNGKVIERY 226
                FL+D++G++  R+
Sbjct: 97  GLPTTFLIDRDGRIRARH 114

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 20/137 (14%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFP 148
           DF + D+DGK+V LS +KGK +++         +  +    L+ LYE++K  G E+L   
Sbjct: 7   DFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVEVLGVS 66

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK 208
            +        S    K+FA  +    FP+    D +G   A  Y  L    G  L     
Sbjct: 67  VD--------SPESHKKFA-EKLGLPFPLL--SDPDG-EVAKAYGVLNEEEGLALRTT-- 112

Query: 209 WNFEKFLVDKNGKVIER 225
                F++D +GK+   
Sbjct: 113 -----FVIDPDGKIRYI 124

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 22/140 (15%)

Query: 90  DFTVKDI--DGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILA 146
           DFT+ D+  DGK V LS FKGK +++       C    + +  L  L + YK +G +++A
Sbjct: 7   DFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVA 66

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
              N            +  F   +   ++P+    D +G        F K  A G   D 
Sbjct: 67  --VNA-----SNDPFFVMNF-WAKEGLKYPVL--ADRDG-------AFTK--AYGLTEDA 107

Query: 207 VKWNFEKFLVDKNGKVIERY 226
                  FL+D++GKV+   
Sbjct: 108 GLRTPRYFLIDEDGKVVYLE 127

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 40/162 (24%)

Query: 68  GFFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNY 127
            FF  +    V   A       +F + D++GK + L   KGK + +    + C       
Sbjct: 27  NFFADKEKVQVGKEAP------NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEM 80

Query: 128 SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI-FDK----VD 182
             ++ LY KYK +G EI+A   +        +   +K F   R+   FP+  DK    +D
Sbjct: 81  PYMNELYPKYKEKGVEIIAVNVD-------ETELAVKNFV-NRYGLTFPVAIDKGRQVID 132

Query: 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE 224
             G    P                       FL+DK+GKV++
Sbjct: 133 AYGVGPLPT---------------------TFLIDKDGKVVK 153

Length = 173

>gnl|CDD|239267 cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 90  DFTVKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148
           DF++ D DGK   L+ F  GK L+++ + + C    +    L+ L ++Y  +G  ++A  
Sbjct: 6   DFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAIN 65

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFP 176
            N        S   +K  A       FP
Sbjct: 66  SNDIEAYPEDSPENMKAKA-KEHGYPFP 92

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	100.0
PLN02412	167	probable glutathione peroxidase	100.0
PTZ00056	199	glutathione peroxidase; Provisional	100.0
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.98
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.97
PTZ00256	183	glutathione peroxidase; Provisional	99.97
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	99.97
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.97
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	99.96
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.95
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.94
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.93
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.93
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.93
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.92
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.92
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.92
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.92
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.92
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.92
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.92
PRK13190	202	putative peroxiredoxin; Provisional	99.92
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.91
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.91
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.91
PRK13599	215	putative peroxiredoxin; Provisional	99.91
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.9
PRK13191	215	putative peroxiredoxin; Provisional	99.9
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.9
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.9
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.89
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.89
PRK15000	200	peroxidase; Provisional	99.89
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.89
PRK13189	222	peroxiredoxin; Provisional	99.88
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.88
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.88
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.88
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.88
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.88
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.87
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.87
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.87
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.85
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.85
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.84
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.83
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.83
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.83
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.82
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.81
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	99.8
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	99.78
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.77
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.73
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.72
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	99.71
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	99.68
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.64
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.62
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.56
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.53
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.52
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	99.52
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.51
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.5
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.49
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.49
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.48
PHA02278	103	thioredoxin-like protein	99.44
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.43
PRK09381	109	trxA thioredoxin; Provisional	99.43
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.42
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.42
PRK10996	139	thioredoxin 2; Provisional	99.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.39
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.38
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.37
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.37
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.37
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.35
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.35
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.31
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.31
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.31
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.3
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.3
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.3
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.28
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.24
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.24
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.23
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.22
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.22
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.21
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.21
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.21
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.2
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.17
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.16
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.16
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.14
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.12
PTZ00051	98	thioredoxin; Provisional	99.11
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.1
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.09
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.07
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.06
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.04
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.04
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.03
PTZ00102	477	disulphide isomerase; Provisional	99.0
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.99
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.97
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.96
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.96
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.95
PLN02309	457	5'-adenylylsulfate reductase	98.93
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.92
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.92
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.92
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.85
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.8
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.8
PTZ00102	477	disulphide isomerase; Provisional	98.74
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.71
PTZ00062	204	glutaredoxin; Provisional	98.68
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.67
PF13728	215	TraF: F plasmid transfer operon protein	98.63
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.58
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.57
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.55
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	98.52
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.52
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.48
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	98.44
smart00594	122	UAS UAS domain.	98.44
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.38
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.35
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.27
PHA02125	75	thioredoxin-like protein	98.26
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.25
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.15
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	98.12
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	98.09
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.09
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.08
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	97.89
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	97.88
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	97.88
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.79
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	97.79
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	97.76
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.74
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	97.58
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.49
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	97.44
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.42
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	97.35
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.35
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.28
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.2
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.17
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.15
KOG4277	468	consensus Uncharacterized conserved protein, conta	97.15
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.08
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	97.04
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.0
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	97.0
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	96.79
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.67
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	96.64
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	96.45
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	96.35
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.3
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.18
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.01
KOG4498	197	consensus Uncharacterized conserved protein [Funct	95.96
PRK11200	85	grxA glutaredoxin 1; Provisional	95.91
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.44
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	95.35
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	94.95
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	94.83
KOG3425	128	consensus Uncharacterized conserved protein [Funct	94.8
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	94.76
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.68
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	94.55
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	94.14
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	94.1
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	94.01
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	93.83
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	93.81
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.67
PRK10329	81	glutaredoxin-like protein; Provisional	93.6
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	93.31
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	93.22
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	93.22
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.13
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	93.12
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	93.01
PHA03050	108	glutaredoxin; Provisional	92.59
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	92.34
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	92.24
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	91.84
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	91.73
PHA03075	123	glutaredoxin-like protein; Provisional	91.66
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	91.54
COG1331	667	Highly conserved protein containing a thioredoxin	90.91
KOG1672	211	consensus ATP binding protein [Posttranslational m	90.46
PRK10824	115	glutaredoxin-4; Provisional	90.3
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	90.18
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	89.96
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	89.84
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	89.38
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	89.16
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	89.14
PRK10638	83	glutaredoxin 3; Provisional	87.9
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	85.72
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	84.79
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	84.78
cd02979	167	PHOX_C FAD-dependent Phenol hydoxylase (PHOX) fami	84.08
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	84.02
KOG3170	240	consensus Conserved phosducin-like protein [Signal	83.96
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	83.67
COG3054	184	Predicted transcriptional regulator [General funct	83.65
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	83.43
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	83.39
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	83.18
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	83.14
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	82.94
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	80.52

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=100.00  E-value=1.9e-43  Score=288.87  Aligned_cols=233  Identities=77%  Similarity=1.174  Sum_probs=206.5

Q ss_pred             CCC-ccccccCCccccccccCCCcchhccccccCCCCCccccccCCCCCCcccCCccccCCCCCCccccccccccccccc
Q 026011            5 SMP-FSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHATAA   83 (245)
Q Consensus         5 ~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (245)
                      ||+ ++++++++.+.+...+++|.      .+++  +|+.+++.++++++++++++++++++.+++...+|.+.......
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (236)
T PLN02399          3 SLTTSSSSYASFKTVFNSSPPPPS------MAFL--VPSLKSSTGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYARAA   74 (236)
T ss_pred             ccccccccccccccccccCCCCCc------cccc--cceeeeccccccchhhccccccccCCCccccccccccccccchh
Confidence            344 55677888888887665555      2244  89999999999999999999999999999999999999888889


Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      .|+.+|+|+++|.+|+.++|++++||++||+||++||++|..++|+|++++++|+++|++||+|++|++...+.++.+++
T Consensus        75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei  154 (236)
T PLN02399         75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  154 (236)
T ss_pred             cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998777777788999


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      ++|+.++++++||++.+.|.+|..+.+.|++++...++..++.+.++|++||||++|+|++++.|..+++++++.|+++|
T Consensus       155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence            99986689999999977777787888999987665565555567888999999999999999999999999999999999


Q ss_pred             hC
Q 026011          244 VA  245 (245)
Q Consensus       244 ~~  245 (245)
                      ++
T Consensus       235 ~~  236 (236)
T PLN02399        235 AA  236 (236)
T ss_pred             cC
Confidence            75

>PLN02412 probable glutathione peroxidase

Probab=100.00  E-value=1.8e-32  Score=215.11  Aligned_cols=161  Identities=73%  Similarity=1.225  Sum_probs=143.4

Q ss_pred             cCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011           85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        85 g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      ...+|+|+++|.+|+.++|++++||++||+||++||+.|..+++.|++++++|+++|++||+|++|++...+.++.+++.
T Consensus         6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~   85 (167)
T PLN02412          6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ   85 (167)
T ss_pred             CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999977666666777777


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ++..++++++||++.+.|.++....+.|+++....++..+..+.++|++||||++|+|++++.|..+++++++.|+++|+
T Consensus        86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412         86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            76558899999999877777777899999887766665555677889999999999999999999999999999999987


Q ss_pred             C
Q 026011          245 A  245 (245)
Q Consensus       245 ~  245 (245)
                      +
T Consensus       166 ~  166 (167)
T PLN02412        166 Q  166 (167)
T ss_pred             h
Confidence            4

>PTZ00056 glutathione peroxidase; Provisional

Probab=100.00  E-value=8.2e-32  Score=216.77  Aligned_cols=162  Identities=40%  Similarity=0.766  Sum_probs=141.4

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      ...+..+|+|+++|.+|+.++|++++||++||+||++||++|..++|.|++++++|+++|++||+|++|++..++.++.+
T Consensus        13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e   92 (199)
T PTZ00056         13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK   92 (199)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999988777778899


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCC---C--CccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL---G--DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE  236 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~---~--~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~  236 (245)
                      ++++|+ ++++++||++.|.+.+|....+++++++.......   +  ..+.+.|++||||++|+|++++.|..++++++
T Consensus        93 ~~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~  171 (199)
T PTZ00056         93 DIRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELE  171 (199)
T ss_pred             HHHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHH
Confidence            999999 89999999998877888777888877653322111   1  12556678999999999999999999999999


Q ss_pred             HHHHHHhh
Q 026011          237 KDIQKLVV  244 (245)
Q Consensus       237 ~~l~~ll~  244 (245)
                      +.|+++|+
T Consensus       172 ~~I~~ll~  179 (199)
T PTZ00056        172 KKIAELLG  179 (199)
T ss_pred             HHHHHHHH
Confidence            99999886

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.98  E-value=2.3e-31  Score=210.40  Aligned_cols=159  Identities=45%  Similarity=0.840  Sum_probs=144.3

Q ss_pred             CcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011           86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE  165 (245)
Q Consensus        86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~  165 (245)
                      ..+++|+++|++|+.++|++++||++||.|||+||+.|. +++.|++++++|+++|++||+|++|+|+.+++++.+++++
T Consensus         3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~   81 (183)
T PRK10606          3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT   81 (183)
T ss_pred             CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence            368999999999999999999999999999999999996 7999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCC--------------------CCCCccccceeEEEECCCCcEEEe
Q 026011          166 FACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG--------------------FLGDLVKWNFEKFLVDKNGKVIER  225 (245)
Q Consensus       166 ~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~P~~~liD~~G~i~~~  225 (245)
                      |+.++++++||++.+.|.+|....++|++++...+.                    ..+..|.|+.+.||||++|+++.+
T Consensus        82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r  161 (183)
T PRK10606         82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR  161 (183)
T ss_pred             HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence            995479999999999999999999999999865541                    112369999999999999999999


Q ss_pred             cCCCCChHH--HHHHHHHHhhC
Q 026011          226 YPPTTSPFQ--IEKDIQKLVVA  245 (245)
Q Consensus       226 ~~g~~~~~~--l~~~l~~ll~~  245 (245)
                      |.+...+++  +++.|+++|++
T Consensus       162 ~~~~~~p~~~~i~~~i~~~l~~  183 (183)
T PRK10606        162 FSPDMTPEDPIVMESIKLALAK  183 (183)
T ss_pred             ECCCCCCCHHHHHHHHHHHhcC
Confidence            999888876  99999998853

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.97  E-value=1.8e-30  Score=201.02  Aligned_cols=150  Identities=62%  Similarity=1.131  Sum_probs=124.6

Q ss_pred             ccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        88 ~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      +|+|+++|.+|+.++|++++||+|||+||++||+ |..++|.|++++++|+++|++||+|++|++...+.++.+++++|+
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~   80 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC   80 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence            7999999999999999999999999999999999 999999999999999999999999999866555567788999999


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      .++++++||++.|.|.++......|+++.....+..+..+.+.+++||||++|+|++++.|..+.+++++.
T Consensus        81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340          81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence            33489999999776656665677777644333221123356667999999999999999999988877654

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.97  E-value=3.9e-30  Score=204.88  Aligned_cols=162  Identities=47%  Similarity=0.856  Sum_probs=136.5

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      .+..+|+|+++|.+|+.++|++++||++ |+.+|++|||+|..++|.|++++++|+++|++||+|++|++..+++++.++
T Consensus        16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~   95 (183)
T PTZ00256         16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE   95 (183)
T ss_pred             CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence            3567999999999999999999999964 566799999999999999999999999999999999998766666667788


Q ss_pred             HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCC--CCccccce---eEEEECCCCcEEEecCCCCChHHHHH
Q 026011          163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL--GDLVKWNF---EKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~--~~~i~~~P---~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                      +.+|+.++++++||++.|.+.++....++|+++....+...  ...+..+|   ++||||++|+|++++.|..+.+++++
T Consensus        96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~  175 (183)
T PTZ00256         96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ  175 (183)
T ss_pred             HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence            99998568899999998877787777889988776554211  11244446   57999999999999999999999999


Q ss_pred             HHHHHhhC
Q 026011          238 DIQKLVVA  245 (245)
Q Consensus       238 ~l~~ll~~  245 (245)
                      .|+++|++
T Consensus       176 ~I~~ll~~  183 (183)
T PTZ00256        176 DIEKLLNA  183 (183)
T ss_pred             HHHHHhcC
Confidence            99999874

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.4e-30  Score=191.62  Aligned_cols=158  Identities=57%  Similarity=1.071  Sum_probs=150.9

Q ss_pred             cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF  166 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~  166 (245)
                      .+.||++++++|++++|++|+||++||.-.|+.|+..+ +...|+.||++|+++|++|+++.+++|.++++++.+++++|
T Consensus         4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f   82 (162)
T COG0386           4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF   82 (162)
T ss_pred             ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence            57799999999999999999999999999999999998 88999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceeeccCCCCCCcchhhhhhhcccCC-CCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          167 ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       167 ~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                      +...|+.+||++...+++|...+++|+++.....+ ..+..|.|+.+.||||+||+|+.||.....|++++..|+++|++
T Consensus        83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~  162 (162)
T COG0386          83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE  162 (162)
T ss_pred             HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence            99999999999999999999999999999988876 55678999999999999999999999999999999999999874

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.97  E-value=1.2e-29  Score=196.66  Aligned_cols=152  Identities=42%  Similarity=0.798  Sum_probs=128.8

Q ss_pred             ccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        88 ~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      +.+|+++|.+|++++|++++||++||+||++|||+|..++|.|++++++|+++|++|++|++++++..+.++.+.+++|+
T Consensus         2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~   81 (153)
T TIGR02540         2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA   81 (153)
T ss_pred             cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999998877777678899999999


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      .++++++||++.|.+..+......|+++....++.    ..++.++||||++|+|++++.|..+.+++++.|+++|
T Consensus        82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~----p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~  153 (153)
T TIGR02540        82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKE----PRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV  153 (153)
T ss_pred             HHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCC----CCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence            43489999999876666666677777654322211    1222349999999999999999999999999998875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.6e-29  Score=187.40  Aligned_cols=162  Identities=65%  Similarity=1.130  Sum_probs=155.9

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      ....+.||+++|++|+.++|+.|+||++||.-.|+.|+.......+|++++++|+++|++|++..++||+.+|+.+.+++
T Consensus        10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei   89 (171)
T KOG1651|consen   10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI   89 (171)
T ss_pred             hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      .++++.+++..||++...|++|....++|++++...++.+++.|.|+.+.||||+||+++.||....++.+++.+|+++|
T Consensus        90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL  169 (171)
T KOG1651|consen   90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL  169 (171)
T ss_pred             HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hC
Q 026011          244 VA  245 (245)
Q Consensus       244 ~~  245 (245)
                      ++
T Consensus       170 ~~  171 (171)
T KOG1651|consen  170 AQ  171 (171)
T ss_pred             cC
Confidence            64

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.2e-27  Score=178.26  Aligned_cols=149  Identities=19%  Similarity=0.287  Sum_probs=122.5

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+.+|+++|||+|++.+|+.++|++++||+|||+|| ..++|.|..++..|++.+++|++.|.+|||||.|        +
T Consensus         3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s   74 (157)
T COG1225           3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S   74 (157)
T ss_pred             cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence            467999999999999999999999999999999888 8999999999999999999999999999999988        9


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---ChHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---SPFQIE  236 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---~~~~l~  236 (245)
                      .+.+++|+ ++++++||+++|.+   ..+.+.|+++....... +.-....+.+||||++|+|++.+....   +.+++.
T Consensus        75 ~~~~~~F~-~k~~L~f~LLSD~~---~~v~~~ygv~~~k~~~g-k~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl  149 (157)
T COG1225          75 PKSHKKFA-EKHGLTFPLLSDED---GEVAEAYGVWGEKKMYG-KEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVL  149 (157)
T ss_pred             HHHHHHHH-HHhCCCceeeECCc---HHHHHHhCcccccccCc-cccccccceEEEECCCCeEEEEecCCCCcccHHHHH
Confidence            99999999 99999999997755   44788888766432200 000223389999999999999984433   344555


Q ss_pred             HHHHHH
Q 026011          237 KDIQKL  242 (245)
Q Consensus       237 ~~l~~l  242 (245)
                      +.|+++
T Consensus       150 ~~l~~l  155 (157)
T COG1225         150 AALKKL  155 (157)
T ss_pred             HHHHHh
Confidence            555554

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.94  E-value=2e-26  Score=177.02  Aligned_cols=133  Identities=31%  Similarity=0.490  Sum_probs=105.8

Q ss_pred             cccCcccCeEEEc--CCCCeeecCCCCCCEEEEEEecC-CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKD--IDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        83 ~~g~~~pdf~l~~--~~G~~v~l~~~~gk~vll~F~~t-~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ++|+++|+|++++  .+|++++|++++||++||+||++ |||+|..++|.|++++++++++|+++|+|+.+        +
T Consensus         1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~   72 (146)
T PF08534_consen    1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------D   72 (146)
T ss_dssp             STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------S
T ss_pred             CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------C
Confidence            4799999999966  99999999999999999999999 99999999999999999999999999999988        4


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS  231 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~  231 (245)
                      ...+.+|+ ++++.+||++.|.+   ..+.+.|+.......+ .+   ..+|+++|||++|+|++++.|..+
T Consensus        73 ~~~~~~~~-~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~-~~---~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   73 DPPVREFL-KKYGINFPVLSDPD---GALAKALGVTIMEDPG-NG---FGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             SHHHHHHH-HHTTTTSEEEEETT---SHHHHHTTCEEECCTT-TT---SSSSEEEEEETTSBEEEEEESSBT
T ss_pred             CHHHHHHH-HhhCCCceEEechH---HHHHHHhCCccccccc-cC---CeecEEEEEECCCEEEEEEeCCCC
Confidence            44489998 77899999996632   3344445421000000 00   145999999999999999988776

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.93  E-value=3.5e-25  Score=171.63  Aligned_cols=147  Identities=16%  Similarity=0.189  Sum_probs=115.3

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecC-CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t-~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+..|+.+|+|+++|.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++|+++|+|+.|        +
T Consensus         3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~   74 (154)
T PRK09437          3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------K   74 (154)
T ss_pred             cCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence            45689999999999999999999999999999999976 78899999999999999999999999999987        7


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                      .+++++|+ ++++.+||++.|.+   ..+.+.|+..........++... .|++||||++|+|++.+.|....+.+.+.+
T Consensus        75 ~~~~~~~~-~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~~~~~~~~-~~~~~lid~~G~i~~~~~g~~~~~~~~~~~  149 (154)
T PRK09437         75 PEKLSRFA-EKELLNFTLLSDED---HQVAEQFGVWGEKKFMGKTYDGI-HRISFLIDADGKIEHVFDKFKTSNHHDVVL  149 (154)
T ss_pred             HHHHHHHH-HHhCCCCeEEECCC---chHHHHhCCCcccccccccccCc-ceEEEEECCCCEEEEEEcCCCcchhHHHHH
Confidence            89999999 78899999996533   33555565432111000000001 178899999999999999876666655544


Q ss_pred             H
Q 026011          240 Q  240 (245)
Q Consensus       240 ~  240 (245)
                      +
T Consensus       150 ~  150 (154)
T PRK09437        150 D  150 (154)
T ss_pred             H
Confidence            3

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.93  E-value=1.2e-25  Score=179.33  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=111.5

Q ss_pred             ccccCcccCeEEEcCCC--CeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDG--KDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G--~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ...|.++|+|+++|++|  +.++++++ +||++||+||++||++|+.++|.|+++++    +|++||+|+.|       +
T Consensus        39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~  107 (185)
T PRK15412         39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------D  107 (185)
T ss_pred             hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence            45799999999999984  67777665 89999999999999999999999988754    47999999986       3


Q ss_pred             ChHHHHHHHHHhcCCCcce-eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011          159 SNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~-~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                      +.+++++|+ ++++.+||+ +.|  ..+ .+...|+             +..+|++||||++|+|++++.|..+.+++++
T Consensus       108 ~~~~~~~~~-~~~~~~~~~~~~D--~~~-~~~~~~g-------------v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~  170 (185)
T PRK15412        108 DRQKAISWL-KELGNPYALSLFD--GDG-MLGLDLG-------------VYGAPETFLIDGNGIIRYRHAGDLNPRVWES  170 (185)
T ss_pred             CHHHHHHHH-HHcCCCCceEEEc--CCc-cHHHhcC-------------CCcCCeEEEECCCceEEEEEecCCCHHHHHH
Confidence            678899999 888999985 533  222 2333343             5566999999999999999999999999999


Q ss_pred             HHHHHhh
Q 026011          238 DIQKLVV  244 (245)
Q Consensus       238 ~l~~ll~  244 (245)
                      .|+.+++
T Consensus       171 ~i~~~~~  177 (185)
T PRK15412        171 EIKPLWE  177 (185)
T ss_pred             HHHHHHH
Confidence            9998875

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.93  E-value=2.1e-25  Score=166.35  Aligned_cols=123  Identities=28%  Similarity=0.485  Sum_probs=105.5

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecC-CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t-~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      +|+++|+|++++.+|+.++|++++||++||.||.+ ||+.|..+++.|++++++++++|+++++|+.|        +.++
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~   72 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE   72 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence            58999999999999999999999999999999988 99999999999999999999999999999988        7889


Q ss_pred             HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe
Q 026011          163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER  225 (245)
Q Consensus       163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~  225 (245)
                      +++|. ++++.+||++.|.+   ..+.+.|+.....       .....|.+||||++|+|+++
T Consensus        73 ~~~~~-~~~~~~~~~~~D~~---~~~~~~~~~~~~~-------~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   73 IKQFL-EEYGLPFPVLSDPD---GELAKAFGIEDEK-------DTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHHHH-HHHTCSSEEEEETT---SHHHHHTTCEETT-------TSEESEEEEEEETTSBEEEE
T ss_pred             hhhhh-hhhccccccccCcc---hHHHHHcCCcccc-------CCceEeEEEEECCCCEEEeC
Confidence            99999 88899999997633   4455555532211       02245999999999999874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.92  E-value=5e-25  Score=167.81  Aligned_cols=138  Identities=22%  Similarity=0.384  Sum_probs=114.4

Q ss_pred             CcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011           86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      +.+|+|+++|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++.++|+++|+|+.|        +.+.++
T Consensus         1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~   72 (140)
T cd03017           1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA   72 (140)
T ss_pred             CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence            3689999999999999999999999999999 6899999999999999999999999999999987        788999


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                      +|+ ++++++||++.|.+   ..+.+.|+......++.    ....|++||||++|+|++.+.|....+.+.+.+
T Consensus        73 ~~~-~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~~----~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017          73 KFA-EKYGLPFPLLSDPD---GKLAKAYGVWGEKKKKY----MGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             HHH-HHhCCCceEEECCc---cHHHHHhCCcccccccc----CCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence            999 78899999996644   34556666433221111    122389999999999999999988777777665

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.92  E-value=9.5e-25  Score=168.08  Aligned_cols=131  Identities=21%  Similarity=0.363  Sum_probs=107.8

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCC-CEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~g-k~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      .+|+.+|+|++.+.+|+.+++++++| |++||.|| ++||+.|..+++.|++++++++++|+++|+|+.|        +.
T Consensus         2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~   73 (149)
T cd03018           2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP   73 (149)
T ss_pred             CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence            57999999999999999999999999 99888887 9999999999999999999999989999999987        77


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                      +.+++|+ ++++++||++.|.+.. ..+...|+......+      + +.|++||||++|+|++.+.|..
T Consensus        74 ~~~~~~~-~~~~~~~~~~~D~~~~-~~~~~~~g~~~~~~~------~-~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018          74 FSLRAWA-EENGLTFPLLSDFWPH-GEVAKAYGVFDEDLG------V-AERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             HHHHHHH-HhcCCCceEecCCCch-hHHHHHhCCccccCC------C-ccceEEEECCCCEEEEEEecCC
Confidence            8899999 7889999999654322 234445553221110      1 2368999999999999998865

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.92  E-value=2e-24  Score=170.34  Aligned_cols=143  Identities=23%  Similarity=0.394  Sum_probs=117.9

Q ss_pred             cCcccCeEEEcCCCCeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           85 EKSLYDFTVKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        85 g~~~pdf~l~~~~G~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      |..+|+|++++.+|+.++++++ +||++||+||++|||.|..+++.|++++++++++++++|+|++|.......++.+++
T Consensus         1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~   80 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM   80 (171)
T ss_pred             CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence            5789999999999999999998 999999999999999999999999999999998889999999984322233578999


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC---------CCCChHH
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP---------PTTSPFQ  234 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~---------g~~~~~~  234 (245)
                      ++|+ ++++++||++.|.+   ..+.+.|+             +.+.|.+||||++|+|++...         +..+.++
T Consensus        81 ~~~~-~~~~~~~~~l~D~~---~~~~~~~~-------------v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~  143 (171)
T cd02969          81 KAKA-KEHGYPFPYLLDET---QEVAKAYG-------------AACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD  143 (171)
T ss_pred             HHHH-HHCCCCceEEECCc---hHHHHHcC-------------CCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence            9999 78899999996543   23344444             455699999999999997741         1234578


Q ss_pred             HHHHHHHHhh
Q 026011          235 IEKDIQKLVV  244 (245)
Q Consensus       235 l~~~l~~ll~  244 (245)
                      +.+.|+.+|.
T Consensus       144 ~~~~i~~~l~  153 (171)
T cd02969         144 LRAALDALLA  153 (171)
T ss_pred             HHHHHHHHHc
Confidence            9999998875

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.92  E-value=2.4e-24  Score=169.85  Aligned_cols=139  Identities=26%  Similarity=0.445  Sum_probs=121.4

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ..+..|..+|+|++.+.+|+.+++++++||+++|+||++||+.|+.+++.|+++++++++.++++++|++|       ++
T Consensus        33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d-------~~  105 (173)
T PRK03147         33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD-------ET  105 (173)
T ss_pred             cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC-------CC
Confidence            44668999999999999999999999999999999999999999999999999999999888999999998       36


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                      .+.+.+|+ ++++.+||++.|.+   ..+.+.|+             +.+.|++|+||++|+++..+.|..+.+++.+.+
T Consensus       106 ~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l  168 (173)
T PRK03147        106 ELAVKNFV-NRYGLTFPVAIDKG---RQVIDAYG-------------VGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL  168 (173)
T ss_pred             HHHHHHHH-HHhCCCceEEECCc---chHHHHcC-------------CCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            78899999 88999999985432   33444444             566699999999999999999999999998888


Q ss_pred             HHH
Q 026011          240 QKL  242 (245)
Q Consensus       240 ~~l  242 (245)
                      +++
T Consensus       169 ~~~  171 (173)
T PRK03147        169 EKI  171 (173)
T ss_pred             HHh
Confidence            765

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.92  E-value=3.9e-24  Score=167.91  Aligned_cols=144  Identities=17%  Similarity=0.181  Sum_probs=110.8

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCC-CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~-C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ...+|+.+|+|+++|.+|+.++|++++||++||+||++| |++|..+++.|+++++++.  |++|++||.|        +
T Consensus        17 ~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~   86 (167)
T PRK00522         17 LPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------L   86 (167)
T ss_pred             CCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------C
Confidence            345899999999999999999999999999999999999 9999999999999999983  7999999988        6


Q ss_pred             hHHHHHHHHHhcCCC-cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC--CChHHHH
Q 026011          160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--TSPFQIE  236 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~--~~~~~l~  236 (245)
                      .+.+++|+ ++++++ +++++|.  .+..+.+.|+...... ...|  + ..|++||||++|+|++.+.+.  .+..+++
T Consensus        87 ~~~~~~f~-~~~~~~~~~~lsD~--~~~~~~~~~gv~~~~~-~~~g--~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~  159 (167)
T PRK00522         87 PFAQKRFC-GAEGLENVITLSDF--RDHSFGKAYGVAIAEG-PLKG--L-LARAVFVLDENNKVVYSELVPEITNEPDYD  159 (167)
T ss_pred             HHHHHHHH-HhCCCCCceEeecC--CccHHHHHhCCeeccc-ccCC--c-eeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence            78889999 788887 6888542  3334566777543210 0011  1 237999999999999988533  2333444


Q ss_pred             HHHHH
Q 026011          237 KDIQK  241 (245)
Q Consensus       237 ~~l~~  241 (245)
                      +.|+.
T Consensus       160 ~~l~~  164 (167)
T PRK00522        160 AALAA  164 (167)
T ss_pred             HHHHH
Confidence            44443

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.92  E-value=2.3e-24  Score=170.21  Aligned_cols=138  Identities=19%  Similarity=0.205  Sum_probs=110.6

Q ss_pred             cccccCcccCeEEEcCCCC--eeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGK--DVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~--~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      ...+|.++|+|+++|.+|+  .++++++ +||+++|+||++||++|+.++|.++++++    +|+++|+|+.|       
T Consensus        33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~-------  101 (173)
T TIGR00385        33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK-------  101 (173)
T ss_pred             chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence            3468999999999999997  4554565 79999999999999999999999988764    46999999976       


Q ss_pred             CChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011          158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                      ++.++..+|+ ++++.+|+.+. .|.+ ..+...|+             +..+|++|+||++|+|++++.|..+.+++++
T Consensus       102 ~~~~~~~~~~-~~~~~~f~~v~-~D~~-~~~~~~~~-------------v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~  165 (173)
T TIGR00385       102 DQSQNALKFL-KELGNPYQAIL-IDPN-GKLGLDLG-------------VYGAPETFLVDGNGVILYRHAGPLNNEVWTE  165 (173)
T ss_pred             CChHHHHHHH-HHcCCCCceEE-ECCC-CchHHhcC-------------CeeCCeEEEEcCCceEEEEEeccCCHHHHHH
Confidence            3566778898 78888998431 2323 23444444             4445999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 026011          238 DIQKLVVA  245 (245)
Q Consensus       238 ~l~~ll~~  245 (245)
                      .|++++++
T Consensus       166 ~l~~~~~~  173 (173)
T TIGR00385       166 GFLPAMEK  173 (173)
T ss_pred             HHHHHhhC
Confidence            99998853

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.92  E-value=6.4e-24  Score=167.72  Aligned_cols=140  Identities=20%  Similarity=0.260  Sum_probs=110.4

Q ss_pred             ccCcccCeEEEcCCC----CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           84 TEKSLYDFTVKDIDG----KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G----~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      +|+.+|+|++++.+|    +.++|++++||++||+|| ++||++|..+++.|++++++|.++|++|++||+|        
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d--------   72 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD--------   72 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence            588999999999887    789999999999999999 8999999999999999999999999999999988        


Q ss_pred             ChHHHHHHHHHh-------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC-
Q 026011          159 SNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT-  230 (245)
Q Consensus       159 ~~~~~~~~~~~~-------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~-  230 (245)
                      +.+..++|. +.       .+++|+++.|.+   ..+.+.|+......+    .   ..|++||||++|+|++.+.+.. 
T Consensus        73 ~~~~~~~~~-~~~~~~~~~~~~~f~~l~D~~---~~~~~~~gv~~~~~~----~---~~p~~~lID~~G~I~~~~~~~~~  141 (173)
T cd03015          73 SHFSHLAWR-NTPRKEGGLGKINFPLLADPK---KKISRDYGVLDEEEG----V---ALRGTFIIDPEGIIRHITVNDLP  141 (173)
T ss_pred             CHHHHHHHH-HhhhhhCCccCcceeEEECCc---hhHHHHhCCccccCC----c---eeeEEEEECCCCeEEEEEecCCC
Confidence            555666676 33       457899996543   445566664332211    1   2389999999999999985543 


Q ss_pred             ---ChHHHHHHHHHH
Q 026011          231 ---SPFQIEKDIQKL  242 (245)
Q Consensus       231 ---~~~~l~~~l~~l  242 (245)
                         +.+++.+.|+++
T Consensus       142 ~~~~~~~il~~l~~~  156 (173)
T cd03015         142 VGRSVDETLRVLDAL  156 (173)
T ss_pred             CCCCHHHHHHHHHHh
Confidence               445677776655

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.92  E-value=4.3e-24  Score=172.51  Aligned_cols=143  Identities=24%  Similarity=0.342  Sum_probs=113.4

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCEEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      +.+|+.+|+|++.+.+| .++|++++||++|| +||++||++|..+++.|++++++|+++|++||+||+|        +.
T Consensus         2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~   72 (202)
T PRK13190          2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI   72 (202)
T ss_pred             CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence            45899999999999888 79999999997766 6889999999999999999999999999999999998        66


Q ss_pred             HHHHHHHH---HhcC--CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec----CCCCC
Q 026011          161 PEIKEFAC---TRFK--AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY----PPTTS  231 (245)
Q Consensus       161 ~~~~~~~~---~~~~--~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~----~g~~~  231 (245)
                      +.+.+|+.   ++++  ++||++.|.+   ..+.+.|+.+....+       ...|.+||||++|+|++..    ....+
T Consensus        73 ~~~~~w~~~~~~~~g~~~~fPll~D~~---~~ia~~ygv~~~~~g-------~~~p~~fiId~~G~I~~~~~~~~~~gr~  142 (202)
T PRK13190         73 YSHIAWLRDIEERFGIKIPFPVIADID---KELAREYNLIDENSG-------ATVRGVFIIDPNQIVRWMIYYPAETGRN  142 (202)
T ss_pred             HHHHHHHHhHHHhcCCCceEEEEECCC---hHHHHHcCCccccCC-------cEEeEEEEECCCCEEEEEEEeCCCCCCC
Confidence            77666652   3454  5899997644   446677776443221       1249999999999999775    33347


Q ss_pred             hHHHHHHHHHHh
Q 026011          232 PFQIEKDIQKLV  243 (245)
Q Consensus       232 ~~~l~~~l~~ll  243 (245)
                      .+++.+.|+.++
T Consensus       143 ~~ellr~l~~l~  154 (202)
T PRK13190        143 IDEIIRITKALQ  154 (202)
T ss_pred             HHHHHHHHHHhh
Confidence            778888887765

>TIGR03137 AhpC peroxiredoxin

Probab=99.91  E-value=2.7e-24  Score=171.78  Aligned_cols=141  Identities=17%  Similarity=0.241  Sum_probs=109.7

Q ss_pred             cccCcccCeEEEc-CCCC--eeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKD-IDGK--DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        83 ~~g~~~pdf~l~~-~~G~--~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+|+.+|+|++++ .+|+  .+++++++||++||+|| ++||++|..+++.|++++++|+++|++||+||.|        
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D--------   74 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD--------   74 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence            4799999999999 5776  67888999999999999 9999999999999999999999999999999998        


Q ss_pred             ChHHHHHHHHHh---cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----C
Q 026011          159 SNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----S  231 (245)
Q Consensus       159 ~~~~~~~~~~~~---~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----~  231 (245)
                      +.+.+++|....   .+++||++.|.+   ..+.+.|+.+....+       .+.|++||||++|+|++.+....    +
T Consensus        75 ~~~~~~~~~~~~~~~~~l~fpllsD~~---~~~a~~~gv~~~~~g-------~~~p~tfiID~~G~I~~~~~~~~~~~~~  144 (187)
T TIGR03137        75 THFVHKAWHDTSEAIGKITYPMLGDPT---GVLTRNFGVLIEEAG-------LADRGTFVIDPEGVIQAVEITDNGIGRD  144 (187)
T ss_pred             CHHHHHHHHhhhhhccCcceeEEECCc---cHHHHHhCCcccCCC-------ceeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence            667777776321   367899996643   446666765432111       12499999999999998875433    4


Q ss_pred             hHHHHHHHHH
Q 026011          232 PFQIEKDIQK  241 (245)
Q Consensus       232 ~~~l~~~l~~  241 (245)
                      .+++.+.|+.
T Consensus       145 ~~~ll~~l~~  154 (187)
T TIGR03137       145 ASELLRKIKA  154 (187)
T ss_pred             HHHHHHHHHH
Confidence            4555555543

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.91  E-value=1.3e-23  Score=167.21  Aligned_cols=143  Identities=12%  Similarity=0.238  Sum_probs=114.6

Q ss_pred             ccccCcccCeEEEcC-CC--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDI-DG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~-~G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      +.+|.++|+|+.+.. +|  .+++|++++||++||+|| ++||++|..+++.|++++++|.++|++||+||.|       
T Consensus         2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D-------   74 (187)
T PRK10382          2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD-------   74 (187)
T ss_pred             CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence            458999999999883 44  467888999999999999 9999999999999999999999999999999988       


Q ss_pred             CChHHHHHHHHHh---cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC----C
Q 026011          158 GSNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----T  230 (245)
Q Consensus       158 ~~~~~~~~~~~~~---~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~----~  230 (245)
                       +.+.+++|..+.   .+++||+++|.+   ..+.+.|+.+....+      + ..|.+||||++|+|++.+...    .
T Consensus        75 -~~~~~~a~~~~~~~~~~l~fpllsD~~---~~ia~~ygv~~~~~g------~-~~r~tfIID~~G~I~~~~~~~~~~~~  143 (187)
T PRK10382         75 -THFTHKAWHSSSETIAKIKYAMIGDPT---GALTRNFDNMREDEG------L-ADRATFVVDPQGIIQAIEVTAEGIGR  143 (187)
T ss_pred             -CHHHHHHHHHhhccccCCceeEEEcCc---hHHHHHcCCCcccCC------c-eeeEEEEECCCCEEEEEEEeCCCCCC
Confidence             889999998432   478999997643   557778876543211      1 239999999999999887433    2


Q ss_pred             ChHHHHHHHHHH
Q 026011          231 SPFQIEKDIQKL  242 (245)
Q Consensus       231 ~~~~l~~~l~~l  242 (245)
                      +.+++.+.|+.+
T Consensus       144 ~~~eil~~l~al  155 (187)
T PRK10382        144 DASDLLRKIKAA  155 (187)
T ss_pred             CHHHHHHHHHhh
Confidence            566777777655

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.91  E-value=1.2e-23  Score=160.92  Aligned_cols=126  Identities=20%  Similarity=0.222  Sum_probs=103.5

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCC-CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~-C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      +|+.+|+|++++.+|+.++|++++||++||+||++| |++|..+++.|++++++++  |+.||+|+.|        +.+.
T Consensus         2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~   71 (143)
T cd03014           2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA   71 (143)
T ss_pred             CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence            689999999999999999999999999999999988 6999999999999999984  6999999988        6778


Q ss_pred             HHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          163 IKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       163 ~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                      +++|. ++++. .++++.|.+  .....+.|+.+....+      + ..|++||||++|+|++.+.|.
T Consensus        72 ~~~~~-~~~~~~~~~~l~D~~--~~~~~~~~gv~~~~~~------~-~~~~~~iid~~G~I~~~~~~~  129 (143)
T cd03014          72 QKRWC-GAEGVDNVTTLSDFR--DHSFGKAYGVLIKDLG------L-LARAVFVIDENGKVIYVELVP  129 (143)
T ss_pred             HHHHH-HhcCCCCceEeecCc--ccHHHHHhCCeeccCC------c-cceEEEEEcCCCeEEEEEECC
Confidence            89998 67775 789886542  1345566665432211      0 138999999999999998765

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.91  E-value=2.1e-23  Score=169.53  Aligned_cols=143  Identities=13%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      .+|+.+|+|++.+.+|+...+++++||++ |++||++|||+|..+++.|++++++|+++|++||+||+|        +.+
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~   74 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF   74 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence            48999999999999999888899999975 568889999999999999999999999999999999998        666


Q ss_pred             HHHHHHH--H---hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC----CCh
Q 026011          162 EIKEFAC--T---RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----TSP  232 (245)
Q Consensus       162 ~~~~~~~--~---~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~----~~~  232 (245)
                      .+.+|..  +   .++++||++.|.+   ..+.+.|+.+....+      ....|++||||++|+|++.+...    .+.
T Consensus        75 ~~~~w~~~i~~~~~~~i~fPil~D~~---~~va~~yg~~~~~~~------~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~  145 (215)
T PRK13599         75 SHIKWVEWIKDNTNIAIPFPVIADDL---GKVSNQLGMIHPGKG------TNTVRAVFIVDDKGTIRLIMYYPQEVGRNV  145 (215)
T ss_pred             HHHHHHHhHHHhcCCCCceeEEECCC---chHHHHcCCCccCCC------CceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence            6666542  2   3578899996643   446777776533211      12349999999999999875321    256


Q ss_pred             HHHHHHHHHH
Q 026011          233 FQIEKDIQKL  242 (245)
Q Consensus       233 ~~l~~~l~~l  242 (245)
                      +++.+.|+.+
T Consensus       146 ~eilr~l~~l  155 (215)
T PRK13599        146 DEILRALKAL  155 (215)
T ss_pred             HHHHHHHHHh
Confidence            6777777765

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.90  E-value=8.2e-24  Score=158.67  Aligned_cols=123  Identities=18%  Similarity=0.182  Sum_probs=101.6

Q ss_pred             cccCeEEEcCCC--CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011           87 SLYDFTVKDIDG--KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        87 ~~pdf~l~~~~G--~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      ++|+|++++++|  +.+++++++||++||+||++||++|+.+++.|+++.+++   +++||+|+.|       ++.+.++
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~~   71 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENAL   71 (127)
T ss_pred             CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHHH
Confidence            689999999999  889999999999999999999999999999999998775   4999999986       4788999


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHH
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI  235 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l  235 (245)
                      +|+ ++++++|+.+. .|.. ..+...|+             +..+|++|+||++|+|++++.|..+.+.+
T Consensus        72 ~~~-~~~~~~~~~~~-~D~~-~~~~~~~~-------------v~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          72 AWL-ARHGNPYAAVG-FDPD-GRVGIDLG-------------VYGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             HHH-HhcCCCCceEE-ECCc-chHHHhcC-------------CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence            998 78888886431 2322 23444444             45569999999999999999998877654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.90  E-value=3.3e-23  Score=168.47  Aligned_cols=143  Identities=18%  Similarity=0.284  Sum_probs=110.8

Q ss_pred             ccccCcccCeEEEcCCCCeeec-CCCCCCEEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPL-SKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l-~~~~gk~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +.+|+.+|+|++++.+|+ +.+ ++++||++|| +||++||++|..+++.|++++++|+++|++|++||+|        +
T Consensus         7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s   77 (215)
T PRK13191          7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------S   77 (215)
T ss_pred             ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------C
Confidence            458999999999999997 555 5589997666 7789999999999999999999999999999999998        6


Q ss_pred             hHHHHHHHH--H---hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----
Q 026011          160 NPEIKEFAC--T---RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----  230 (245)
Q Consensus       160 ~~~~~~~~~--~---~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----  230 (245)
                      ...+++|..  +   .++++||+++|.+   ..+.+.|+.+.....+      ...|.+||||++|+|++.+.+..    
T Consensus        78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~---~~ia~~ygv~~~~~~~------~~~r~tfIID~~G~Ir~~~~~~~~~gr  148 (215)
T PRK13191         78 NISHIEWVMWIEKNLKVEVPFPIIADPM---GNVAKRLGMIHAESST------ATVRAVFIVDDKGTVRLILYYPMEIGR  148 (215)
T ss_pred             HHHHHHHHhhHHHhcCCCCceEEEECCc---hHHHHHcCCcccccCC------ceeEEEEEECCCCEEEEEEecCCCCCC
Confidence            676666542  2   3468899997644   5577778765432111      13499999999999998764332    


Q ss_pred             ChHHHHHHHHHH
Q 026011          231 SPFQIEKDIQKL  242 (245)
Q Consensus       231 ~~~~l~~~l~~l  242 (245)
                      +.+++.+.|+.+
T Consensus       149 ~~~eilr~l~al  160 (215)
T PRK13191        149 NIDEILRAIRAL  160 (215)
T ss_pred             CHHHHHHHHHHh
Confidence            666777777665

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.90  E-value=2e-23  Score=159.37  Aligned_cols=137  Identities=22%  Similarity=0.311  Sum_probs=107.1

Q ss_pred             cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCC-ChHHHHHHHHHHHHhhhCC---cEEEEEecCCCCCCCCCChHH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~-C~~~~~~l~~l~~~~~~~g---~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      .+|+|++.|.+|+.+++.+++||++||+||++||+. |..+++.|+++++++++++   +++++|+.|    +..++.+.
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d----~~~d~~~~   76 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD----PERDTPEV   76 (142)
T ss_pred             CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC----CCCCCHHH
Confidence            379999999999999999999999999999999997 9999999999999998875   999999998    33357789


Q ss_pred             HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccC-CCCCCccccceeEEEECCCCcEEEecCC
Q 026011          163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                      +++|+ ++++.+|+++.+.+.....+.+.|+....... ...++.+.|.|.+||||++|+|++.|.+
T Consensus        77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~  142 (142)
T cd02968          77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG  142 (142)
T ss_pred             HHHHH-HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence            99999 78888999996532111234444553322111 1112336677999999999999998754

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.90  E-value=8.2e-23  Score=165.24  Aligned_cols=141  Identities=14%  Similarity=0.220  Sum_probs=109.1

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCC-CEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKG-KVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~g-k~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      +|+.+|+|++.+.+| .+++++++| |++ |++||++|||+|..+++.|++++++|+++|++|++||+|        +.+
T Consensus         1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~   71 (203)
T cd03016           1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE   71 (203)
T ss_pred             CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence            488999999999988 589999998 655 557889999999999999999999999999999999998        667


Q ss_pred             HHHHHHHHh------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----C
Q 026011          162 EIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----S  231 (245)
Q Consensus       162 ~~~~~~~~~------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----~  231 (245)
                      .+++|. +.      .+++||++.|.+   ..+.+.|+.+....+.  +   ...|.+||||++|+|++.+.+..    +
T Consensus        72 ~~~~~~-~~i~~~~~~~~~fpil~D~~---~~ia~~yg~~~~~~~~--~---~~~r~~fiID~~G~I~~~~~~~~~~gr~  142 (203)
T cd03016          72 SHIKWI-EDIEEYTGVEIPFPIIADPD---REVAKLLGMIDPDAGS--T---LTVRAVFIIDPDKKIRLILYYPATTGRN  142 (203)
T ss_pred             HHHHHH-hhHHHhcCCCCceeEEECch---HHHHHHcCCccccCCC--C---ceeeEEEEECCCCeEEEEEecCCCCCCC
Confidence            777766 32      688999997644   4466667654322110  0   12388999999999998875432    4


Q ss_pred             hHHHHHHHHHH
Q 026011          232 PFQIEKDIQKL  242 (245)
Q Consensus       232 ~~~l~~~l~~l  242 (245)
                      .+++.+.|+.+
T Consensus       143 ~~ell~~l~~l  153 (203)
T cd03016         143 FDEILRVVDAL  153 (203)
T ss_pred             HHHHHHHHHHH
Confidence            56777777665

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.89  E-value=2.6e-23  Score=155.81  Aligned_cols=113  Identities=21%  Similarity=0.307  Sum_probs=94.0

Q ss_pred             CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026011           98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI  177 (245)
Q Consensus        98 G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~  177 (245)
                      |+.++|++++||++||+||++||++|..+++.|++++++++++|+++|+|+.+++.  ..++.+++++|+ ++++++||+
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~-~~~~~~~p~   89 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAV-LRYGITYPV   89 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHH-HHcCCCCCE
Confidence            47899999999999999999999999999999999999999999999999875321  124788999999 899999999


Q ss_pred             eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       178 ~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                      +.|.+   ..+...|+             +.++|++||||++|+|++++.|.
T Consensus        90 ~~D~~---~~~~~~~~-------------v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          90 ANDND---YATWRAYG-------------NQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             EECCc---hHHHHHhC-------------CCcCCeEEEECCCCcEEEEEecC
Confidence            96533   22233333             55669999999999999998874

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.89  E-value=1.6e-22  Score=161.82  Aligned_cols=131  Identities=15%  Similarity=0.194  Sum_probs=102.8

Q ss_pred             ccccCcccCeEEEcCCCCeeecC--CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLS--KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~--~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ..+|+.+|+|+++|.+|+.+++.  +++||++||+||++|||+|+.++|.++++++++   ++++++|+.|        +
T Consensus        46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------~  114 (189)
T TIGR02661        46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------T  114 (189)
T ss_pred             CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------C
Confidence            56899999999999999999995  579999999999999999999999999988653   5789999854        7


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                      .+++++|+ ++++++++.+. .  . .++.+.|+             +...|++||||++|+|+++.. ....+++++.+
T Consensus       115 ~~~~~~~~-~~~~~~~~~~~-~--~-~~i~~~y~-------------v~~~P~~~lID~~G~I~~~g~-~~~~~~le~ll  175 (189)
T TIGR02661       115 PAEHRRFL-KDHELGGERYV-V--S-AEIGMAFQ-------------VGKIPYGVLLDQDGKIRAKGL-TNTREHLESLL  175 (189)
T ss_pred             HHHHHHHH-HhcCCCcceee-c--h-hHHHHhcc-------------CCccceEEEECCCCeEEEccC-CCCHHHHHHHH
Confidence            88999999 78888876552 1  1 22334444             455699999999999988642 23445666666


Q ss_pred             HHH
Q 026011          240 QKL  242 (245)
Q Consensus       240 ~~l  242 (245)
                      +.+
T Consensus       176 ~~l  178 (189)
T TIGR02661       176 EAD  178 (189)
T ss_pred             HHH
Confidence            544

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PRK15000 peroxidase; Provisional

Probab=99.89  E-value=1.8e-22  Score=162.54  Aligned_cols=142  Identities=16%  Similarity=0.244  Sum_probs=109.2

Q ss_pred             cccCcccCeEEEcCC--CC---eeecCCC-CCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           83 ATEKSLYDFTVKDID--GK---DVPLSKF-KGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~--G~---~v~l~~~-~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      .+|+.+|+|++++..  |+   .++|+++ +||++||+||. +||++|..+++.|++++++|+++|++||+||+|     
T Consensus         3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D-----   77 (200)
T PRK15000          3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD-----   77 (200)
T ss_pred             cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            479999999999864  44   3456665 89999999997 599999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHH---HhcC---CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          156 EPGSNPEIKEFAC---TRFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       156 ~~~~~~~~~~~~~---~~~~---~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                         +.+.++.|..   ++.+   ++||+++|.+   ..+.+.|+.+....+    .   ..|.+||||++|+|++.+.+.
T Consensus        78 ---~~~~~~~w~~~~~~~~g~~~i~fpllsD~~---~~ia~~ygv~~~~~g----~---~~r~tfiID~~G~I~~~~~~~  144 (200)
T PRK15000         78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVADVK---REIQKAYGIEHPDEG----V---ALRGSFLIDANGIVRHQVVND  144 (200)
T ss_pred             ---CHHHHHHHHhhHHHhCCccccCceEEECCC---cHHHHHcCCccCCCC----c---EEeEEEEECCCCEEEEEEecC
Confidence               6777777652   2333   5899997644   456777775432221    1   249999999999999987664


Q ss_pred             C----ChHHHHHHHHHH
Q 026011          230 T----SPFQIEKDIQKL  242 (245)
Q Consensus       230 ~----~~~~l~~~l~~l  242 (245)
                      .    +.+++.+.|+.+
T Consensus       145 ~~~gr~~~eilr~l~al  161 (200)
T PRK15000        145 LPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            4    555666666654

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.89  E-value=1.3e-22  Score=168.16  Aligned_cols=143  Identities=17%  Similarity=0.216  Sum_probs=112.3

Q ss_pred             cccccCcccCeEEEc-CCCC--eeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           81 TAATEKSLYDFTVKD-IDGK--DVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~-~~G~--~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      ...+|+.+|+|++++ .+|+  +++|+++ +||++||+|| ++||++|..+++.|++++++|+++|++|++||+|     
T Consensus        67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D-----  141 (261)
T PTZ00137         67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD-----  141 (261)
T ss_pred             cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            356999999999988 5664  6899998 8988888877 9999999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHH------hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          156 EPGSNPEIKEFACT------RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       156 ~~~~~~~~~~~~~~------~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                         +.+.+++|..+      ..+++||++.|.+   ..+.+.|+.+.. .    |   ...|++||||++|+|++.+...
T Consensus       142 ---s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~---~~iakayGv~~~-~----g---~a~R~tFIID~dG~I~~~~~~~  207 (261)
T PTZ00137        142 ---SPFSHKAWKELDVRQGGVSPLKFPLFSDIS---REVSKSFGLLRD-E----G---FSHRASVLVDKAGVVKHVAVYD  207 (261)
T ss_pred             ---CHHHHHHHHhhhhhhccccCcceEEEEcCC---hHHHHHcCCCCc-C----C---ceecEEEEECCCCEEEEEEEeC
Confidence               67777777632      2578899997643   456777775432 1    1   1249999999999999876322


Q ss_pred             ----CChHHHHHHHHHH
Q 026011          230 ----TSPFQIEKDIQKL  242 (245)
Q Consensus       230 ----~~~~~l~~~l~~l  242 (245)
                          .+.+++.+.|+.+
T Consensus       208 ~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        208 LGLGRSVDETLRLFDAV  224 (261)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence                2666777777655

>PRK13189 peroxiredoxin; Provisional

Probab=99.88  E-value=4.8e-22  Score=162.52  Aligned_cols=145  Identities=15%  Similarity=0.252  Sum_probs=110.8

Q ss_pred             cccccCcccCeEEEcCCCCeeecCC-CCCCEEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSK-FKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~-~~gk~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+.+|+.+|+|++++.+|+ +.+++ ++||++|| +||++||++|..+++.|++++++|+++|++||+||+|        
T Consensus         8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------   78 (222)
T PRK13189          8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------   78 (222)
T ss_pred             cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------
Confidence            3568999999999999985 67776 59996654 7789999999999999999999999999999999998        


Q ss_pred             ChHHHHHHHHH---h--cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---
Q 026011          159 SNPEIKEFACT---R--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---  230 (245)
Q Consensus       159 ~~~~~~~~~~~---~--~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---  230 (245)
                      +...+.+|..+   +  .+++||++.|.+   ..+.+.|+.+....++      ...|++||||++|+|++...+..   
T Consensus        79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~---~~ia~~ygv~~~~~~~------~~~r~tfIID~~G~Ir~~~~~~~~~g  149 (222)
T PRK13189         79 QVFSHIKWVEWIKEKLGVEIEFPIIADDR---GEIAKKLGMISPGKGT------NTVRAVFIIDPKGIIRAILYYPQEVG  149 (222)
T ss_pred             CHHHHHHHHHhHHHhcCcCcceeEEEcCc---cHHHHHhCCCccccCC------CceeEEEEECCCCeEEEEEecCCCCC
Confidence            67777777632   1  357899997644   4567777754322111      13499999999999988764322   


Q ss_pred             -ChHHHHHHHHHHh
Q 026011          231 -SPFQIEKDIQKLV  243 (245)
Q Consensus       231 -~~~~l~~~l~~ll  243 (245)
                       +.+++.+.|+.+.
T Consensus       150 r~~~eilr~l~alq  163 (222)
T PRK13189        150 RNMDEILRLVKALQ  163 (222)
T ss_pred             CCHHHHHHHHHHhh
Confidence             5667777776653

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.88  E-value=3e-22  Score=147.21  Aligned_cols=110  Identities=18%  Similarity=0.295  Sum_probs=90.9

Q ss_pred             cCeEEEcCCCCeeecCCCC-CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFK-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~-gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      |+|++++.+|+.++|.+++ ||++||+||++||++|+.++|.++++++++.+ ++.++.|+ |       ++.++.++++
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~   71 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL   71 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence            7999999999999999997 99999999999999999999999999988865 48888886 3       3678899999


Q ss_pred             HHhcCCC-cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          168 CTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       168 ~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                       +++++. +|++.+     ..+...|+             +..+|++||||++|+|+++.
T Consensus        72 -~~~~~~~~p~~~~-----~~~~~~~~-------------~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          72 -KKHGLEAFPYVLS-----AELGMAYQ-------------VSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             -HHhCCCCCcEEec-----HHHHhhcC-------------CCCcCeEEEECCCCeEEecc
Confidence             788884 888732     12333343             45569999999999997763

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.88  E-value=4.1e-22  Score=151.66  Aligned_cols=129  Identities=24%  Similarity=0.341  Sum_probs=105.4

Q ss_pred             cccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE  165 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~  165 (245)
                      .+|+|+++|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.|+++|+|+.|        +.+.+++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~   72 (140)
T cd02971           1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA   72 (140)
T ss_pred             CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence            479999999999999999999999999999 7899999999999999999998889999999987        7788999


Q ss_pred             HHHHhc-CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 026011          166 FACTRF-KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS  231 (245)
Q Consensus       166 ~~~~~~-~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~  231 (245)
                      |+ +++ +.+|+++.|.+   ..+.+.|+.......   +. ....|++||||++|+|++++.|...
T Consensus        73 ~~-~~~~~~~~~~l~D~~---~~~~~~~g~~~~~~~---~~-~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971          73 WA-EKEGGLNFPLLSDPD---GEFAKAYGVLIEKSA---GG-GLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             HH-hcccCCCceEEECCC---hHHHHHcCCcccccc---cc-CceeEEEEEECCCCcEEEEEecCCC
Confidence            99 777 88999996533   234555554332211   00 1124899999999999999988764

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.88  E-value=5.1e-22  Score=178.49  Aligned_cols=139  Identities=18%  Similarity=0.168  Sum_probs=111.3

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      ...++.+|+|++.|.+|+.+.++  +||+|||+||++||++|+.++|.|+++++++++++++||+|+++...  ...+.+
T Consensus        32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~--~e~~~~  107 (521)
T PRK14018         32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL--HEKKDG  107 (521)
T ss_pred             ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc--ccccHH
Confidence            45677899999999999999987  89999999999999999999999999999998778999999985321  123456


Q ss_pred             HHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          162 EIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       162 ~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      ++++|+ +..+. .+|++.|  .+ ..+...|+             |..+|+++|||++|+|+.++.|..+.+++++.|+
T Consensus       108 ~~~~~~-~~~~y~~~pV~~D--~~-~~lak~fg-------------V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        108 DFQKWY-AGLDYPKLPVLTD--NG-GTLAQSLN-------------ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHHHHH-HhCCCcccceecc--cc-HHHHHHcC-------------CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            777777 44443 4677743  22 22333333             6677999999999999999999999999988887


Q ss_pred             H
Q 026011          241 K  241 (245)
Q Consensus       241 ~  241 (245)
                      .
T Consensus       171 ~  171 (521)
T PRK14018        171 N  171 (521)
T ss_pred             H
Confidence            3

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.88  E-value=4.1e-22  Score=160.75  Aligned_cols=142  Identities=17%  Similarity=0.206  Sum_probs=108.3

Q ss_pred             ccccCcccCeEEEc----CCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           82 AATEKSLYDFTVKD----IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        82 ~~~g~~~pdf~l~~----~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      ..+|+++|+|++.+    .+|++++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+||.|      
T Consensus         6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------   79 (199)
T PTZ00253          6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------   79 (199)
T ss_pred             cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence            45899999999765    466899999999999999999 5899999999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHH-h-----cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          157 PGSNPEIKEFACT-R-----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       157 ~~~~~~~~~~~~~-~-----~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                        +.....+|..+ +     .+++||++.|.+   ..+.+.|+.+....+      + ..|.+||||++|+|++.+.+..
T Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~fpll~D~~---~~ia~~ygv~~~~~g------~-~~r~~fiID~~G~i~~~~~~~~  147 (199)
T PTZ00253         80 --SEYAHLQWTLQERKKGGLGTMAIPMLADKT---KSIARSYGVLEEEQG------V-AYRGLFIIDPKGMLRQITVNDM  147 (199)
T ss_pred             --CHHHHHHHHhChHhhCCccccccceEECcH---hHHHHHcCCcccCCC------c-eEEEEEEECCCCEEEEEEecCC
Confidence              56556665421 1     147899997644   556777776543221      1 2389999999999998875543


Q ss_pred             ----ChHHHHHHHHH
Q 026011          231 ----SPFQIEKDIQK  241 (245)
Q Consensus       231 ----~~~~l~~~l~~  241 (245)
                          +.+++.+.|+.
T Consensus       148 ~~~r~~~e~l~~l~a  162 (199)
T PTZ00253        148 PVGRNVEEVLRLLEA  162 (199)
T ss_pred             CCCCCHHHHHHHHHh
Confidence                33344444443

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.88  E-value=1.6e-22  Score=154.04  Aligned_cols=107  Identities=10%  Similarity=0.141  Sum_probs=82.8

Q ss_pred             CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-------CcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011           99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-------GFEILAFPCNQFGGQEPGSNPEIKEFACTRF  171 (245)
Q Consensus        99 ~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-------g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~  171 (245)
                      +.++|++++||+|+|+|||+||++|+.++|.|++++++++++       +++||+|+.|       ++.+++++|+ +++
T Consensus        16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~-~~~   87 (146)
T cd03008          16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFL-KDM   87 (146)
T ss_pred             ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHH-HHC
Confidence            346788999999999999999999999999999999988653       6999999988       3667789998 788


Q ss_pred             CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       172 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                      ++.|+.+...+..+..+...|+             +..+|++||||++|+|+.+.
T Consensus        88 ~~~~~~~p~~~~~~~~l~~~y~-------------v~~iPt~vlId~~G~Vv~~~  129 (146)
T cd03008          88 PKKWLFLPFEDEFRRELEAQFS-------------VEELPTVVVLKPDGDVLAAN  129 (146)
T ss_pred             CCCceeecccchHHHHHHHHcC-------------CCCCCEEEEECCCCcEEeeC
Confidence            8776443222211122333333             55669999999999998774

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.87  E-value=7.4e-22  Score=147.05  Aligned_cols=121  Identities=18%  Similarity=0.310  Sum_probs=103.3

Q ss_pred             cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC  168 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~  168 (245)
                      |+|++++++|+.+++.+++||+++|+||++||++|+.+++.|++++++     +++++|++|      .++.+++.+|+ 
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~------~~~~~~~~~~~-   68 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALR------SGDDGAVARFM-   68 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEcc------CCCHHHHHHHH-
Confidence            799999999999999999999999999999999999999999999876     678999887      34689999999 


Q ss_pred             HhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      ++++++||++.|.+   ..+.+.|+             |.+.|+++|||++| +++++.|..+++++.+.
T Consensus        69 ~~~~~~~~~~~d~~---~~~~~~~~-------------i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~  121 (123)
T cd03011          69 QKKGYGFPVINDPD---GVISARWG-------------VSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             HHcCCCccEEECCC---cHHHHhCC-------------CCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence            78899999985432   22344444             66679999999999 99999999999888765

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.87  E-value=7.5e-22  Score=151.60  Aligned_cols=129  Identities=18%  Similarity=0.233  Sum_probs=98.9

Q ss_pred             cccCeEEEcCCCCeeecCCCC-CCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFK-GKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~-gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      .+|+|+++|.+|+.++++++. +|++ |++||++||++|+.+++.|+++++++.++|+++|+|+.|        +.+...
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~   72 (149)
T cd02970           1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE   72 (149)
T ss_pred             CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence            479999999999999999875 4655 555569999999999999999999999999999999987        566777


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhccc-----------------CCCCCCccccceeEEEECCCCcEEEecC
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA-----------------GGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                      +|. ++++++||++.|.+   ..+.+.|+......                 ++. +......|++||||++|+|++.+.
T Consensus        73 ~~~-~~~~~~~p~~~D~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~fvid~~g~i~~~~~  147 (149)
T cd02970          73 AFD-KGKFLPFPVYADPD---RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGND-EGDGLQLPGVFVIGPDGTILFAHV  147 (149)
T ss_pred             HHH-HhcCCCCeEEECCc---hhHHHHcCceecCcHHHHHHHHhhCcccccccCC-CCcccccceEEEECCCCeEEEEec
Confidence            888 78899999996644   33445555422111                 011 111234599999999999999887


Q ss_pred             C
Q 026011          228 P  228 (245)
Q Consensus       228 g  228 (245)
                      |
T Consensus       148 ~  148 (149)
T cd02970         148 D  148 (149)
T ss_pred             C
Confidence            5

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.4e-21  Score=150.78  Aligned_cols=144  Identities=21%  Similarity=0.314  Sum_probs=119.6

Q ss_pred             ccccCcccCeEEEcC-CCC---eeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           82 AATEKSLYDFTVKDI-DGK---DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~-~G~---~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      ..+|+++|+|++... .|+   +++++++.||+++|+|| +++.++|+.++..++++|++|+++|++||+||+|      
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------   76 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------   76 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence            358999999999998 774   89999998999999999 9999999999999999999999999999999999      


Q ss_pred             CCChHHHHHHHHH---hcC---CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          157 PGSNPEIKEFACT---RFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       157 ~~~~~~~~~~~~~---~~~---~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                        +...+.+|...   ..+   ++||++.|.+   .++++.|+++..+.|..       .+.+||||++|+|++......
T Consensus        77 --s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~---~~vs~~ygvl~~~~g~a-------~R~~FIIDp~g~ir~~~v~~~  144 (194)
T COG0450          77 --SVFSHKAWKATIREAGGIGKIKFPMIADPK---GEIARAYGVLHPEEGLA-------LRGTFIIDPDGVIRHILVNPL  144 (194)
T ss_pred             --cHHHHHHHHhcHHhcCCccceecceEEcCc---hhHHHHcCCcccCCCcc-------eeEEEEECCCCeEEEEEEecC
Confidence              88888888844   455   6899997655   55889999877555532       288999999999987653332


Q ss_pred             ----ChHHHHHHHHHHh
Q 026011          231 ----SPFQIEKDIQKLV  243 (245)
Q Consensus       231 ----~~~~l~~~l~~ll  243 (245)
                          +.+++.+.|+.+.
T Consensus       145 ~iGRn~dEilR~idAlq  161 (194)
T COG0450         145 TIGRNVDEILRVIDALQ  161 (194)
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence                5677777777653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.87  E-value=8.9e-22  Score=191.87  Aligned_cols=146  Identities=18%  Similarity=0.226  Sum_probs=120.5

Q ss_pred             ccccccCcccCeEEEc--CCCCeeec-CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKD--IDGKDVPL-SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~--~~G~~v~l-~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      .....|..+|+|...+  .+|+++++ ++++||+|||+||++||++|+.++|.|++++++|++++++||+|+++.+  +.
T Consensus       389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~--D~  466 (1057)
T PLN02919        389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF--DN  466 (1057)
T ss_pred             hccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc--cc
Confidence            3455799999999876  68999998 5899999999999999999999999999999999999999999986532  11


Q ss_pred             CCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011          157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE  236 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~  236 (245)
                      .++.+++++++ +++++.||++.|.+  + .+.+.|+             |..+|+++|||++|+|++++.|....++++
T Consensus       467 ~~~~~~~~~~~-~~~~i~~pvv~D~~--~-~~~~~~~-------------V~~iPt~ilid~~G~iv~~~~G~~~~~~l~  529 (1057)
T PLN02919        467 EKDLEAIRNAV-LRYNISHPVVNDGD--M-YLWRELG-------------VSSWPTFAVVSPNGKLIAQLSGEGHRKDLD  529 (1057)
T ss_pred             cccHHHHHHHH-HHhCCCccEEECCc--h-HHHHhcC-------------CCccceEEEECCCCeEEEEEecccCHHHHH
Confidence            23567888998 79999999985432  2 2222332             667799999999999999999998899999


Q ss_pred             HHHHHHhh
Q 026011          237 KDIQKLVV  244 (245)
Q Consensus       237 ~~l~~ll~  244 (245)
                      +.|++++.
T Consensus       530 ~~l~~~l~  537 (1057)
T PLN02919        530 DLVEAALQ  537 (1057)
T ss_pred             HHHHHHHH
Confidence            99888763

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.85  E-value=8.2e-21  Score=138.40  Aligned_cols=116  Identities=31%  Similarity=0.533  Sum_probs=99.4

Q ss_pred             CeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026011           90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT  169 (245)
Q Consensus        90 df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~  169 (245)
                      +|++.+.+|+.+++.+++||++||+||++||+.|+..++.|.++++++++.++.+++|++|.      ++.+.+++++ +
T Consensus         1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~-~   73 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFL-K   73 (116)
T ss_pred             CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHH-H
Confidence            57889999999999999999999999999999999999999999999987789999999982      1489999999 7


Q ss_pred             hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       170 ~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                      +++.+++++.|.   ...+.+.|+             +.++|+++|+|++|++++++.|
T Consensus        74 ~~~~~~~~~~~~---~~~~~~~~~-------------~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          74 KYGITFPVLLDP---DGELAKAYG-------------VRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             HcCCCcceEEcC---cchHHHhcC-------------cCccceEEEECCCCcEEEEecC
Confidence            888999998553   233444454             4556999999999999998865

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.85  E-value=6.1e-21  Score=147.88  Aligned_cols=132  Identities=17%  Similarity=0.226  Sum_probs=106.0

Q ss_pred             ccCcccCeEEEcCC---CCeeecCC-CCCCEEEEEEe-cCCCCCChHH-HHHHHHHHHHhhhCCc-EEEEEecCCCCCCC
Q 026011           84 TEKSLYDFTVKDID---GKDVPLSK-FKGKVLLIVNV-ASRCGLTPSN-YSELSHLYEKYKTQGF-EILAFPCNQFGGQE  156 (245)
Q Consensus        84 ~g~~~pdf~l~~~~---G~~v~l~~-~~gk~vll~F~-~t~C~~C~~~-~~~l~~l~~~~~~~g~-~vv~Vs~D~~~~~~  156 (245)
                      +|+.+|+|++++.+   |+.++|++ ++||++||+|| +.|||.|..+ ++.|++.+++|.+.|+ +|++||.|      
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------   74 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------   74 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence            58899999999985   99999999 68886666665 9999999999 9999999999999999 69999988      


Q ss_pred             CCChHHHHHHHHHhcCC--CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          157 PGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~--~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                        +.+.+++|+ +++++  +||+++|.+   ..+.+.|+.+.....  .+......+.+|||| +|+|++.+....
T Consensus        75 --~~~~~~~~~-~~~~~~~~f~lLsD~~---~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~  141 (155)
T cd03013          75 --DPFVMKAWG-KALGAKDKIRFLADGN---GEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEED  141 (155)
T ss_pred             --CHHHHHHHH-HhhCCCCcEEEEECCC---HHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence              899999999 78887  899997754   557888886544321  010011238899999 799998875543

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.84  E-value=1.8e-20  Score=147.58  Aligned_cols=132  Identities=21%  Similarity=0.214  Sum_probs=97.8

Q ss_pred             ccccCcccCeEEEcC-----C-----CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEE------E
Q 026011           82 AATEKSLYDFTVKDI-----D-----GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI------L  145 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~-----~-----G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~v------v  145 (245)
                      +..|+++|...+.|-     +     .+.++.++++||++||.|||+||++|..+.|.|.++    +++|+.+      +
T Consensus        23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~   98 (184)
T TIGR01626        23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTT   98 (184)
T ss_pred             hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceE
Confidence            456777777766554     3     356778889999999999999999999999999998    4456888      9


Q ss_pred             EEecCCCCCCCCCChHHHHHHHHHhcCCCcc---eeeccCCCCCCcchhhhhhhcccCCCCCCccccceeE-EEECCCCc
Q 026011          146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFP---IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEK-FLVDKNGK  221 (245)
Q Consensus       146 ~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~-~liD~~G~  221 (245)
                      +|+.|+   ...+...-+++|+ ++.+..||   ++.  |.++. ....|+             +...|++ ||||++|+
T Consensus        99 ~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vll--D~~g~-v~~~~g-------------v~~~P~T~fVIDk~Gk  158 (184)
T TIGR01626        99 IINADD---AIVGTGMFVKSSA-KKGKKENPWSQVVL--DDKGA-VKNAWQ-------------LNSEDSAIIVLDKTGK  158 (184)
T ss_pred             EEECcc---chhhHHHHHHHHH-HHhcccCCcceEEE--CCcch-HHHhcC-------------CCCCCceEEEECCCCc
Confidence            999882   0011233456666 67788888   664  33332 334444             5556888 89999999


Q ss_pred             EEEecCCCCChHHHHH
Q 026011          222 VIERYPPTTSPFQIEK  237 (245)
Q Consensus       222 i~~~~~g~~~~~~l~~  237 (245)
                      |++++.|..+.+++++
T Consensus       159 Vv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       159 VKFVKEGALSDSDIQT  174 (184)
T ss_pred             EEEEEeCCCCHHHHHH
Confidence            9999999998887766

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.83  E-value=2e-20  Score=146.56  Aligned_cols=121  Identities=15%  Similarity=0.237  Sum_probs=93.8

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      .....|+|++.  +|+.+++++++    ||+||++|||+|+.++|.|+++++++   |++|++|++|+       ..   
T Consensus        51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~~---  111 (181)
T PRK13728         51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------QG---  111 (181)
T ss_pred             CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------CC---
Confidence            44567888885  89999999998    77799999999999999999999997   59999999882       11   


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE-EecCCCCChHHHHHHHHHH
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~-~~~~g~~~~~~l~~~l~~l  242 (245)
                              ...||++.|.  .+......|+.           .+.++|++||||++|+++ ..+.|..+.+++++.|+++
T Consensus       112 --------~~~fPv~~dd--~~~~~~~~~g~-----------~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~l  170 (181)
T PRK13728        112 --------DTAFPEALPA--PPDVMQTFFPN-----------IPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTV  170 (181)
T ss_pred             --------CCCCceEecC--chhHHHHHhCC-----------CCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence                    2578888421  11212222321           013559999999999996 5799999999999999998


Q ss_pred             hh
Q 026011          243 VV  244 (245)
Q Consensus       243 l~  244 (245)
                      ++
T Consensus       171 l~  172 (181)
T PRK13728        171 LQ  172 (181)
T ss_pred             Hh
Confidence            75

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.83  E-value=7.3e-21  Score=143.70  Aligned_cols=110  Identities=22%  Similarity=0.296  Sum_probs=83.5

Q ss_pred             CCC-CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011           96 IDG-KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus        96 ~~G-~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      +|| +++++++++||++||+||++||++|+.+++.|++++++++++  +++|++|++|.       +.+.+++|+ ++++
T Consensus         4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~   75 (132)
T cd02964           4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP   75 (132)
T ss_pred             ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC
Confidence            344 489999999999999999999999999999999999999875  79999999983       567888998 6766


Q ss_pred             CCcceeeccCC-CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          173 AEFPIFDKVDV-NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       173 ~~~p~~~d~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                       .+..+...+. ....+.+.|+             |..+|+++|||++|+|+++..
T Consensus        76 -~~~~~~~~d~~~~~~~~~~~~-------------v~~iPt~~lid~~G~iv~~~~  117 (132)
T cd02964          76 -PWLAVPFEDEELRELLEKQFK-------------VEGIPTLVVLKPDGDVVTTNA  117 (132)
T ss_pred             -CeEeeccCcHHHHHHHHHHcC-------------CCCCCEEEEECCCCCEEchhH
Confidence             4443321110 0011222232             566799999999999987754

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.83  E-value=7.7e-20  Score=147.75  Aligned_cols=151  Identities=22%  Similarity=0.347  Sum_probs=122.2

Q ss_pred             CeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhh---hCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011           90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYK---TQGFEILAFPCNQFGGQEPGSNPEIKE  165 (245)
Q Consensus        90 df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~---~~g~~vv~Vs~D~~~~~~~~~~~~~~~  165 (245)
                      +|+++|.+|+.+++.+++||++||+|.+|+|| .|+.++..|.++++++.   ..+++++.|++|    |++|+++.+++
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~  124 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK  124 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence            89999999999999999999999999999999 99999999999999988   345899999999    89999999999


Q ss_pred             HHHH-hcCCCcceeeccCCCCCCcchhhhhhhcccCCC--CCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          166 FACT-RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGF--LGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       166 ~~~~-~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~--~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      |+ . .+...|..+.........+.+.|+++.......  ..+.+.|...+||||++|+++..+.+..+++++.+.|+++
T Consensus       125 Y~-~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l  203 (207)
T COG1999         125 YA-ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL  203 (207)
T ss_pred             Hh-cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence            99 5 444445555432222344445555543112211  3567999999999999999999998888899999999999


Q ss_pred             hhC
Q 026011          243 VVA  245 (245)
Q Consensus       243 l~~  245 (245)
                      +++
T Consensus       204 ~~~  206 (207)
T COG1999         204 LKE  206 (207)
T ss_pred             hhc
Confidence            863

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.82  E-value=2.6e-20  Score=147.04  Aligned_cols=140  Identities=21%  Similarity=0.325  Sum_probs=107.2

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCCh
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      .....|+|+|.|.+|+.+++++++||++||+|.++.|| .|+..+..|.++++++.++  .+++|.||+|    |+.|++
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp  103 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP  103 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence            45568899999999999999999999999999999999 9999999999999998864  5999999999    888999


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhccc---CCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                      +.+++|+ +.++.++..+......-..+.+.|+..-...   .....+.+.|...+||||++|+++..|.+
T Consensus       104 ~~L~~Y~-~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~  173 (174)
T PF02630_consen  104 EVLKKYA-KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL  173 (174)
T ss_dssp             HHHHHHH-HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred             HHHHHHH-HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence            9999999 7888887766432211122333344321111   12334568999999999999999998864

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.81  E-value=3e-20  Score=140.07  Aligned_cols=111  Identities=21%  Similarity=0.360  Sum_probs=82.9

Q ss_pred             EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011           93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTR  170 (245)
Q Consensus        93 l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~  170 (245)
                      +.|.+|+.+++++++||++||+||++||++|+.++|.|++++++++++  +++|++|++|.       +.+..+++. ++
T Consensus         3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~   74 (131)
T cd03009           3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK   74 (131)
T ss_pred             ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence            568899999999999999999999999999999999999999999865  69999999983       556777777 44


Q ss_pred             cCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          171 FKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       171 ~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                      ++. .+|+.. .+ ....+.+.|+             |..+|+++|||++|+|+.+.
T Consensus        75 ~~~~~~~~~~-~~-~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~  116 (131)
T cd03009          75 MPWLAVPFSD-RE-RRSRLNRTFK-------------IEGIPTLIILDADGEVVTTD  116 (131)
T ss_pred             CCeeEcccCC-HH-HHHHHHHHcC-------------CCCCCEEEEECCCCCEEccc
Confidence            321 111110 00 0011222232             55669999999999998764

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=99.80  E-value=7.2e-19  Score=126.65  Aligned_cols=107  Identities=68%  Similarity=1.225  Sum_probs=99.5

Q ss_pred             cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC  168 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~  168 (245)
                      .||+++|++|++++|++++||++||.-.|+.|+... +...|++++++|+++|++|+++.+++|+.+++++.+++++++.
T Consensus         2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~   80 (108)
T PF00255_consen    2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK   80 (108)
T ss_dssp             GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred             cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence            589999999999999999999999999999999988 9999999999999999999999999999999999999999997


Q ss_pred             HhcCCCcceeeccCCCCCCcchhhhhhh
Q 026011          169 TRFKAEFPIFDKVDVNGPNTAPVYQFLK  196 (245)
Q Consensus       169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~  196 (245)
                      .+++..||++...+++|....++|++++
T Consensus        81 ~~~~~~F~vf~ki~VnG~~ahPly~~LK  108 (108)
T PF00255_consen   81 EKFGVTFPVFEKIDVNGPDAHPLYKYLK  108 (108)
T ss_dssp             HCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred             hccCCcccceEEEEecCCCCcHHHHHhC
Confidence            7799999999999999999999999864

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.8e-18  Score=129.26  Aligned_cols=145  Identities=21%  Similarity=0.334  Sum_probs=114.9

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCC-EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ...+|+.+|||+|+|.||+.++|.++.|+ +||++|| +...|.|..+...+++-|++++..|.+|+++|.|        
T Consensus        62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D--------  133 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD--------  133 (211)
T ss_pred             eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence            56799999999999999999999999886 8888777 7888999999999999999999999999999988        


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChH-HHHH
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPF-QIEK  237 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~-~l~~  237 (245)
                      +....+.|. .+++++|.+++|..   .++...++.-+...||..+      +..||+|++|.....+.....++ .+.+
T Consensus       134 ~s~sqKaF~-sKqnlPYhLLSDpk---~e~ik~lGa~k~p~gg~~~------Rsh~if~kg~~k~~ik~~~isPevsvd~  203 (211)
T KOG0855|consen  134 DSASQKAFA-SKQNLPYHLLSDPK---NEVIKDLGAPKDPFGGLPG------RSHYIFDKGGVKQLIKNNQISPEVSVDE  203 (211)
T ss_pred             chHHHHHhh-hhccCCeeeecCcc---hhHHHHhCCCCCCCCCccc------ceEEEEecCCeEEEEEecccCccccHHH
Confidence            788899998 89999999996533   4455666654444444332      77899999887766555555554 4455


Q ss_pred             HHHHHh
Q 026011          238 DIQKLV  243 (245)
Q Consensus       238 ~l~~ll  243 (245)
                      .++.++
T Consensus       204 a~k~~~  209 (211)
T KOG0855|consen  204 ALKFLK  209 (211)
T ss_pred             HHHHHh
Confidence            554443

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.77  E-value=5.1e-19  Score=125.79  Aligned_cols=94  Identities=23%  Similarity=0.283  Sum_probs=70.9

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhh-hCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ||+++|+||++||++|..+++.|.+++++++ +.++++|+|+.|       ++.++.+++. ++++.++..+...+..  
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~-~~~~~~~~~~~~~~~~--   70 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFL-KKNNFPWYNVPFDDDN--   70 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHH-HTCTTSSEEEETTTHH--
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHH-HhcCCCceEEeeCcch--
Confidence            7999999999999999999999999999999 556999999998       3678999998 6776666665322211  


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcE
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV  222 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i  222 (245)
                       ...+.+.+          .|..+|+++|+|++|+|
T Consensus        71 -~~~l~~~~----------~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   71 -NSELLKKY----------GINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             -HHHHHHHT----------T-TSSSEEEEEETTSBE
T ss_pred             -HHHHHHHC----------CCCcCCEEEEECCCCCC
Confidence             12222221          16777999999999987

...

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.73  E-value=1.8e-17  Score=127.57  Aligned_cols=109  Identities=14%  Similarity=0.219  Sum_probs=76.1

Q ss_pred             CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026011           98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI  177 (245)
Q Consensus        98 G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~  177 (245)
                      |+.+.++++    .||+||++||++|+.++|.|+++++++   |++|++|++|.       ..  .     +    .||.
T Consensus        44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~-----~----~fp~   98 (153)
T TIGR02738        44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L-----T----GFPD   98 (153)
T ss_pred             chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c-----c----cccc
Confidence            566666554    499999999999999999999999987   48999999882       11  0     1    2443


Q ss_pred             eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHh
Q 026011          178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       178 ~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      ..+.+  +......|+.          +.+..+|++||||++|++ +.++.|..+.+++++.|+++|
T Consensus        99 ~~~~~--~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738        99 PLPAT--PEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             ccCCc--hHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence            32111  1111111210          015566999999999886 557889999999999998875

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.72  E-value=1.8e-17  Score=126.49  Aligned_cols=108  Identities=15%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             EEEcCCCCeeecCC--CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026011           92 TVKDIDGKDVPLSK--FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT  169 (245)
Q Consensus        92 ~l~~~~G~~v~l~~--~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~  169 (245)
                      ++++++++...+++  .+||++||+||++||++|+.+.|.|.++++++.++ +.++.|++|.        . ...+.+ +
T Consensus         2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~--------~-~~~~~~-~   70 (142)
T cd02950           2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN--------P-KWLPEI-D   70 (142)
T ss_pred             ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC--------c-ccHHHH-H
Confidence            34555666655554  37899999999999999999999999999999765 8899998872        1 112223 3


Q ss_pred             hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       170 ~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      +|+                                  |..+|+++|+|++|+++.++.|..+.+++.+.|+++++
T Consensus        71 ~~~----------------------------------V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          71 RYR----------------------------------VDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             HcC----------------------------------CCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence            322                                  44459999999999999999999989999999998875

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=99.71  E-value=6.7e-17  Score=130.19  Aligned_cols=151  Identities=21%  Similarity=0.289  Sum_probs=117.5

Q ss_pred             cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhC-C--cEEEEEecCCCCCCCCCChHHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ-G--FEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~-g--~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      -+|+|.|.+|+.++-.|++||++||+|..|+|| .|+.++..|.+..++..++ |  +.-|.|++|    |++|+++.++
T Consensus       120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~  195 (280)
T KOG2792|consen  120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA  195 (280)
T ss_pred             CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence            589999999999999999999999999999999 9999999999999988765 3  335899999    8999999999


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcc-cCC-CCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS-AGG-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      +|+ ++++...--+......-..+.+.|+++-+. ... ...+.|.|.-.+||||++|+.+..|.-..+++++.+.|.+-
T Consensus       196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~  274 (280)
T KOG2792|consen  196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH  274 (280)
T ss_pred             HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence            999 777755433322221223344555543222 222 34567999999999999999998887777889988887765


Q ss_pred             hh
Q 026011          243 VV  244 (245)
Q Consensus       243 l~  244 (245)
                      +.
T Consensus       275 v~  276 (280)
T KOG2792|consen  275 VA  276 (280)
T ss_pred             HH
Confidence            43

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=4.9e-16  Score=118.17  Aligned_cols=130  Identities=19%  Similarity=0.265  Sum_probs=106.4

Q ss_pred             cccCcccCeEEEc-CCC--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKD-IDG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        83 ~~g~~~pdf~l~~-~~G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+..++|+|.-+. +||  ++++|++|+||+|+++|| ..+..+|+.++-.+.+.+++|++.|.+||++|+|        
T Consensus         5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------   76 (196)
T KOG0852|consen    5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------   76 (196)
T ss_pred             ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence            3455668888665 466  689999999999999998 7888899999999999999999999999999999        


Q ss_pred             ChHHHHHHHH---HhcCC---CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          159 SNPEIKEFAC---TRFKA---EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       159 ~~~~~~~~~~---~~~~~---~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                      +...+.+|+.   ++.++   ++|+++|..   ..+.+-|+++....|-.+       +..||||++|.+++.-....
T Consensus        77 S~fshlAW~ntprk~gGlg~~~iPllsD~~---~~IsrdyGvL~~~~G~~l-------RglfIId~~gi~R~it~NDl  144 (196)
T KOG0852|consen   77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLN---HEISRDYGVLKEDEGIAL-------RGLFIIDPDGILRQITINDL  144 (196)
T ss_pred             chhhhhhHhcCchhhCCcCccccceeeccc---hhhHHhcCceecCCCcce-------eeeEEEccccceEEeeeccc
Confidence            8889999983   33444   599997654   568899999988776443       78999999999987544433

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.64  E-value=2.4e-15  Score=108.56  Aligned_cols=90  Identities=18%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+.+||+|||+||++||++|+.+.|.|.++.+++  .++.++.|+.|        ......+++ ++++           
T Consensus        11 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d--------~~~~~~~l~-~~~~-----------   68 (103)
T cd02985          11 KKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGD--------ENDSTMELC-RREK-----------   68 (103)
T ss_pred             HHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECC--------CChHHHHHH-HHcC-----------
Confidence            3456999999999999999999999999999999  34899999987        223344555 4433           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                                             |..+|+++++ ++|+++.++.|. .++++.+.+.
T Consensus        69 -----------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          69 -----------------------IIEVPHFLFY-KDGEKIHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             -----------------------CCcCCEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Confidence                                   3444986555 999999999995 5667776654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.6e-15  Score=112.63  Aligned_cols=91  Identities=19%  Similarity=0.276  Sum_probs=76.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++||||+|||.||++|+...|.|+++..+|.++ +++..|++|+       .    -+.+ .+|+              
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~----~ela-~~Y~--------------  112 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------H----PELA-EDYE--------------  112 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------c----cchH-hhcc--------------
Confidence            4679999999999999999999999999999776 9999998872       1    2233 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                                          |.+.|+++++ +||+.+.++.|..+.+.+.+.|++.|+.
T Consensus       113 --------------------I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~~  150 (150)
T KOG0910|consen  113 --------------------ISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLKL  150 (150)
T ss_pred             --------------------eeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhcC
Confidence                                5555988888 8999999999999999999999998863

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.56  E-value=1e-14  Score=110.48  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=91.3

Q ss_pred             eEEEcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           91 FTVKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        91 f~l~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      ..+...+|..+..+ .++||+|.++|-+.|||+|+...|.|.++|++.++.+  ++||.||.|       .+.+++.+|.
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~   87 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM   87 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence            67788889888877 5899999999999999999999999999999998764  999999998       3788888888


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                       ..++.+|..+-..|...++....|.             |..+|.+.+++++|+++...
T Consensus        88 -~~~~~~W~~iPf~d~~~~~l~~ky~-------------v~~iP~l~i~~~dG~~v~~d  132 (157)
T KOG2501|consen   88 -LEHHGDWLAIPFGDDLIQKLSEKYE-------------VKGIPALVILKPDGTVVTED  132 (157)
T ss_pred             -HhcCCCeEEecCCCHHHHHHHHhcc-------------cCcCceeEEecCCCCEehHh
Confidence             6666666665333322233333333             77779999999999887554

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.53  E-value=8e-14  Score=101.98  Aligned_cols=91  Identities=14%  Similarity=0.061  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      ..+|+++||+||++||++|+...|.+.++.+++++.++.++.|++|        ...   +.+ ++++            
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--------~~~---~l~-~~~~------------   76 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--------HER---RLA-RKLG------------   76 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--------ccH---HHH-HHcC------------
Confidence            3468999999999999999999999999999998767899999876        221   222 3322            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                            |..+|+++++ ++|+++.++.|..+.+++.+.|+++
T Consensus        77 ----------------------V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          77 ----------------------AHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             ----------------------CccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence                                  4445999999 5999999999988888998888764

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.52  E-value=8.1e-14  Score=100.39  Aligned_cols=87  Identities=13%  Similarity=0.174  Sum_probs=67.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .|++++|+||++||++|+.+.|.|.++++++++..+.++.|+.|        ..    +.+ ++|+              
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~----~~~-~~~~--------------   68 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TI----DTL-KRYR--------------   68 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CH----HHH-HHcC--------------
Confidence            58899999999999999999999999999998666788888765        22    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                          |...|+++++ ++|+++.+..|. +++.+.+.|+++
T Consensus        69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~  102 (102)
T cd02948          69 --------------------GKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL  102 (102)
T ss_pred             --------------------CCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence                                3444965555 799999999885 778888888764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=2.5e-13  Score=103.53  Aligned_cols=150  Identities=15%  Similarity=0.236  Sum_probs=111.2

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCC-EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ++..|+.+|+|+..+..| .+++.||-|. +.+++-. +.+.|+|..++..+.++..+|.++|++.|++|+|        
T Consensus         5 ~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d--------   75 (224)
T KOG0854|consen    5 RLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD--------   75 (224)
T ss_pred             cccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------
Confidence            456899999999998887 6799999886 5555433 8999999999999999999999999999999999        


Q ss_pred             ChHHHHHHHH------Hhc--CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec--CC
Q 026011          159 SNPEIKEFAC------TRF--KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY--PP  228 (245)
Q Consensus       159 ~~~~~~~~~~------~~~--~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~--~g  228 (245)
                      +.+.+++|++      +..  ..+||++.|..   .+++.+|+.+..+..+..+.. ...+.+||||++.+|+-.+  ..
T Consensus        76 ~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~---rela~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs~lYP~  151 (224)
T KOG0854|consen   76 DVESHKDWIKDIKSYAKVKNHSVPYPIIADPN---RELAFLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLSFLYPS  151 (224)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCCCCCeecCCc---hhhhhhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEEEEccc
Confidence            5555555552      222  37899995533   557777877665544433332 2237899999999998543  21


Q ss_pred             C--CChHHHHHHHHHHh
Q 026011          229 T--TSPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~--~~~~~l~~~l~~ll  243 (245)
                      .  .+.+++.+.|+.|+
T Consensus       152 ttGRN~dEiLRvidsLq  168 (224)
T KOG0854|consen  152 TTGRNFDEILRVIDSLQ  168 (224)
T ss_pred             ccCcCHHHHHHHHHHHh
Confidence            1  26778888887764

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.51  E-value=1e-13  Score=100.15  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=70.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .||++||.||++||++|+...+.+   .++.+.+.+ ++.++.|++++       ..+...+++ ++++           
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~~~-----------   69 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KRFG-----------   69 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HHcC-----------
Confidence            578999999999999999998877   577788876 69999998762       222234454 4433           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECC-CCcEEEecCCCCChHHHHHHHH
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~-~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                                             |..+|+++++++ +|+++.++.|..+.+++.+.|+
T Consensus        70 -----------------------i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          70 -----------------------VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             -----------------------CCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence                                   344599999999 9999999999999988887763

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.50  E-value=1.7e-13  Score=102.28  Aligned_cols=104  Identities=17%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             CC-CEEEEEEecCCCCCChHHHHHHH---HHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          107 KG-KVLLIVNVASRCGLTPSNYSELS---HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       107 ~g-k~vll~F~~t~C~~C~~~~~~l~---~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      +| |++||+||++||++|+.+.+.+.   ++.+.+.+ ++.++.|++|.        ...+.+|-  .          ..
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~--------~~~~~~~~--~----------~~   70 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG--------DKEVTDFD--G----------EA   70 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC--------CceeeccC--C----------CC
Confidence            57 89999999999999999998875   56666654 58899998872        11111110  0          00


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHhh
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      .....+...|+             |..+|+++++|++ |+++.++.|..+.+++.+.|+.+++
T Consensus        71 ~~~~~l~~~~~-------------v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          71 LSEKELARKYR-------------VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             ccHHHHHHHcC-------------CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            00011122222             5566999999999 8999999999999999999998875

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR02740 TraF-like TraF-like protein

Probab=99.49  E-value=6.1e-14  Score=117.93  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=79.6

Q ss_pred             CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011           99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF  178 (245)
Q Consensus        99 ~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~  178 (245)
                      +...+++++|+++||+||++||++|+.+.|.|+++++++   |++|++|++|.       ...           ..||.+
T Consensus       157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~~  215 (271)
T TIGR02740       157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPNA  215 (271)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCcc
Confidence            346788899999999999999999999999999999987   48999999982       110           014443


Q ss_pred             eccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHh
Q 026011          179 DKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       179 ~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                         +.+ ......|+             |.++|++||+|++ |++.....|..+.++|.+.|..+.
T Consensus       216 ---~~d-~~la~~~g-------------V~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a  264 (271)
T TIGR02740       216 ---RPD-AGQAQQLK-------------IRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAA  264 (271)
T ss_pred             ---cCC-HHHHHHcC-------------CCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence               111 11222332             6677999999995 666666778889999988887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.49  E-value=8.1e-14  Score=100.03  Aligned_cols=86  Identities=16%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+++||++||+||++||++|+.+.|.+.++.+++++  +.++.|..|        .  ...+.+ ++++           
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~--------~--~~~~l~-~~~~-----------   69 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEES--------S--IKPSLL-SRYG-----------   69 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECC--------C--CCHHHH-HhcC-----------
Confidence            457999999999999999999999999999999864  778887543        0  011222 2222           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                                             |.++|+++++++ | .+.++.|..+.+++.+.
T Consensus        70 -----------------------V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f   99 (100)
T cd02999          70 -----------------------VVGFPTILLFNS-T-PRVRYNGTRTLDSLAAF   99 (100)
T ss_pred             -----------------------CeecCEEEEEcC-C-ceeEecCCCCHHHHHhh
Confidence                                   455599999964 5 67889998888877664

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.48  E-value=2.3e-13  Score=96.64  Aligned_cols=85  Identities=18%  Similarity=0.267  Sum_probs=68.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +|+++||+||++||++|+...+.++++.+.+.+. +.++.|++|        ..   .+.+ ++++              
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~--------~~---~~l~-~~~~--------------   63 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCD--------AQ---PQIA-QQFG--------------   63 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEecc--------CC---HHHH-HHcC--------------
Confidence            5789999999999999999999999999999764 888888876        22   2233 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                                          |...|++++++ +|+++.++.|..+.+++.+.|
T Consensus        64 --------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          64 --------------------VQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             --------------------CCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence                                33449999996 999999999988888888766

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PHA02278 thioredoxin-like protein

Probab=99.44  E-value=5.8e-13  Score=95.87  Aligned_cols=87  Identities=15%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +++++||+||++||++|+...|.+.++.+++..+ +.++.|++|.       ......+.+ ++++              
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~-------~~~d~~~l~-~~~~--------------   69 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDA-------EDVDREKAV-KLFD--------------   69 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCc-------cccccHHHH-HHCC--------------
Confidence            5789999999999999999999999998875443 7789998872       110112222 3332              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                                          |..+|+++++ ++|+++.+..|..+.+++.+
T Consensus        70 --------------------I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~   99 (103)
T PHA02278         70 --------------------IMSTPVLIGY-KDGQLVKKYEDQVTPMQLQE   99 (103)
T ss_pred             --------------------CccccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence                                4455977777 78999999999887777654

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.8e-12  Score=96.79  Aligned_cols=127  Identities=21%  Similarity=0.224  Sum_probs=99.4

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+++|+++|+|++.+.+.+.+++.++.||.. |..|..-..|.|..+.+++++...++.+  ..|+.||.|        .
T Consensus        17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------L   86 (158)
T COG2077          17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------L   86 (158)
T ss_pred             CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------C
Confidence            3679999999999999999999999999955 4566688999999999999999998865  899999998        8


Q ss_pred             hHHHHHHHHHhcCCC-cceeeccCCCCCCcchhhhhhhcccC--CCCCCccccceeEEEECCCCcEEEec
Q 026011          160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                      +...++|+ ...++. ...++  |.......+.|+.+..+..  |.+.      +++|++|.+|+|+|.-
T Consensus        87 PFAq~RfC-~aeGi~nv~~lS--d~r~~~Fge~yGv~I~egpL~gLlA------RaV~V~De~g~V~y~e  147 (158)
T COG2077          87 PFAQKRFC-GAEGIENVITLS--DFRDRAFGENYGVLINEGPLAGLLA------RAVFVLDENGKVTYSE  147 (158)
T ss_pred             hhHHhhhh-hhcCcccceEhh--hhhhhhhhHhhCEEeccccccCeee------eEEEEEcCCCcEEEEE
Confidence            99999999 666765 44453  3333444556665544321  2221      7899999999998764

>PRK09381 trxA thioredoxin; Provisional

Probab=99.43  E-value=1.2e-12  Score=95.23  Aligned_cols=90  Identities=19%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++++|+||++||++|+...|.++++.+++.++ +.++.|++|.        ..   ... ++++              
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~--------~~---~~~-~~~~--------------   72 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ--------NP---GTA-PKYG--------------   72 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC--------Ch---hHH-HhCC--------------
Confidence            3679999999999999999999999999999875 8999998872        11   112 2322              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          +...|+++++ ++|+++.++.|..+.+++++.|++.|+
T Consensus        73 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~  109 (109)
T PRK09381         73 --------------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  109 (109)
T ss_pred             --------------------CCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence                                3334988888 799999999999899999999988763

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.42  E-value=6.3e-13  Score=95.41  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             CCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011           96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF  175 (245)
Q Consensus        96 ~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (245)
                      ++++.++..-.++++++|.||++||++|+.+.|.+.++.+++++. +.+..|++|+        .   .+.+ ++++   
T Consensus         6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~--------~---~~~~-~~~~---   69 (101)
T cd03003           6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD--------D---RMLC-RSQG---   69 (101)
T ss_pred             cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc--------c---HHHH-HHcC---
Confidence            344444333335689999999999999999999999999999865 8899999872        1   2233 3433   


Q ss_pred             ceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011          176 PIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       176 p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                                                     |..+|+++++ ++|+.+.++.|..+.+.|.+
T Consensus        70 -------------------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~   99 (101)
T cd03003          70 -------------------------------VNSYPSLYVF-PSGMNPEKYYGDRSKESLVK   99 (101)
T ss_pred             -------------------------------CCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence                                           3344988888 78998889999888877665

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.42  E-value=5.4e-13  Score=97.10  Aligned_cols=79  Identities=11%  Similarity=-0.020  Sum_probs=61.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++||+||++||++|+.+.|.|.++.+++.+. +.++.|++|+        .   .+.+ ++|+              
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~--------~---~~la-~~~~--------------   65 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE--------V---PDFN-KMYE--------------   65 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC--------C---HHHH-HHcC--------------
Confidence            4679999999999999999999999999999765 7899998872        2   2333 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPF  233 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~  233 (245)
                                          |..+|+++++ ++|+++.+..|..+..
T Consensus        66 --------------------V~~iPTf~~f-k~G~~v~~~~G~~~~~   91 (114)
T cd02954          66 --------------------LYDPPTVMFF-FRNKHMKIDLGTGNNN   91 (114)
T ss_pred             --------------------CCCCCEEEEE-ECCEEEEEEcCCCCCc
Confidence                                3444987777 8999999988865433

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK10996 thioredoxin 2; Provisional

Probab=99.41  E-value=6.6e-13  Score=101.01  Aligned_cols=89  Identities=12%  Similarity=0.210  Sum_probs=71.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++|+++|+||++||++|+...+.|.++++++.+. +.++.|++|        ..   .+.. ++++              
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~--------~~---~~l~-~~~~--------------  103 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTE--------AE---RELS-ARFR--------------  103 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCC--------CC---HHHH-HhcC--------------
Confidence            5789999999999999999999999999988764 888888766        22   2233 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++++.|++++
T Consensus       104 --------------------V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        104 --------------------IRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             --------------------CCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence                                3344988777 59999999999999999999998864

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1e-12  Score=108.93  Aligned_cols=90  Identities=19%  Similarity=0.322  Sum_probs=76.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +-+||||+||++||++|+..+|.|.++..+|+++ +.+..|++|.        .   ...+ ..++              
T Consensus        42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~--------~---p~vA-aqfg--------------   94 (304)
T COG3118          42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA--------E---PMVA-AQFG--------------   94 (304)
T ss_pred             cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc--------c---hhHH-HHhC--------------
Confidence            5569999999999999999999999999999987 9999999982        2   1222 2322              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |+.+|++|++ ++|+-+.-|.|..+.+++.+.|++++.
T Consensus        95 --------------------iqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118          95 --------------------VQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             --------------------cCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence                                5666999999 999999999999999999999998863

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.38  E-value=1.5e-13  Score=100.47  Aligned_cols=106  Identities=21%  Similarity=0.217  Sum_probs=66.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHH---HHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHL---YEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l---~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      +||++|++||.+||++|+...+.+.+.   ...+++ ++.++.++++.       ..+....+. +..+...+....   
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~---   71 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVL-DFDGQKNVRLSN---   71 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHH-SHTCHSSCHHHH---
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------ccccccccc-ccccchhhhHHH---
Confidence            589999999999999999888888754   334433 48899998872       333333444 322221111100   


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                        ..+...|+             |.++|+++++|++|+++.++.|..+++++.+.|
T Consensus        72 --~~l~~~~~-------------v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   72 --KELAQRYG-------------VNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             --HHHHHHTT---------------SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             --HHHHHHcC-------------CCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence              11122222             777899999999999999999999999988765

...

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4.8e-12  Score=91.31  Aligned_cols=85  Identities=24%  Similarity=0.326  Sum_probs=68.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|.++|+|+++||++|+...|.+.++..+|.+  +.++.|++|        .   +.+.+ .+++              
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~~~--------------   71 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KEFN--------------   71 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-HhcC--------------
Confidence            368999999999999999999999999999987  899999987        2   45555 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                          |...|+++++ ++|+.+.++.|.. .+++++.|.+
T Consensus        72 --------------------V~~~PTf~f~-k~g~~~~~~vGa~-~~~l~~~i~~  104 (106)
T KOG0907|consen   72 --------------------VKAMPTFVFY-KGGEEVDEVVGAN-KAELEKKIAK  104 (106)
T ss_pred             --------------------ceEeeEEEEE-ECCEEEEEEecCC-HHHHHHHHHh
Confidence                                4445988888 9999999998874 4467666654

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.37  E-value=3e-12  Score=91.82  Aligned_cols=86  Identities=19%  Similarity=0.235  Sum_probs=65.2

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+|+ +||.||++||++|+...|.+.++.+++++.++.+..|++|.        ..   ..+ ++++             
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--------~~---~~~-~~~~-------------   68 (101)
T cd02994          15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--------EP---GLS-GRFF-------------   68 (101)
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--------CH---hHH-HHcC-------------
Confidence            3566 57999999999999999999999998876668888888762        11   122 3332             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                                           |..+|+++++ ++|++ .++.|..+.++|.+.|+
T Consensus        69 ---------------------i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          69 ---------------------VTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE  100 (101)
T ss_pred             ---------------------CcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence                                 3444998887 88986 78889888888877765

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.37  E-value=4.4e-12  Score=95.83  Aligned_cols=91  Identities=10%  Similarity=-0.001  Sum_probs=69.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++|||+||++||++|+...|.|.++.+++++. +.|+-|++|+        .   .+++ +.|++             
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~---~dla-~~y~I-------------   75 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------V---PDFN-TMYEL-------------   75 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------C---HHHH-HHcCc-------------
Confidence            5689999999999999999999999999999776 8889998882        2   3444 44443             


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCc-EEEecCC--------CCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPP--------TTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~-i~~~~~g--------~~~~~~l~~~l~~ll~  244 (245)
                                           ...|+++++-++|+ .+.+..|        ..+.+++.+.++.++.
T Consensus        76 ---------------------~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~  121 (142)
T PLN00410         76 ---------------------YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR  121 (142)
T ss_pred             ---------------------cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence                                 11266665558888 7888888        4577788888887763

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.35  E-value=5.9e-12  Score=90.76  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++++|.||++||++|+...|.+.++.+++.+. +.+..|++|        ..   .+.+ ++++              
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~--------~~---~~~~-~~~~--------------   70 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQ--------KY---ESLC-QQAN--------------   70 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECC--------ch---HHHH-HHcC--------------
Confidence            4679999999999999999999999999998654 889999877        22   2333 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC-hHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS-PFQIEKD  238 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~-~~~l~~~  238 (245)
                                          |..+|++++++++|+.+.++.|..+ .++|.+.
T Consensus        71 --------------------i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~  103 (104)
T cd03004          71 --------------------IRAYPTIRLYPGNASKYHSYNGWHRDADSILEF  103 (104)
T ss_pred             --------------------CCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence                                3344999999777688999999876 7777654

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.35  E-value=3.8e-12  Score=92.72  Aligned_cols=88  Identities=18%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||+++|.||++||++|+...|.+.++.+++++.++.++.|.+|.       +.   ..++.+.++              
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~---~~~~~~~~~--------------   75 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQ---REFAKEELQ--------------   75 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cc---hhhHHhhcC--------------
Confidence            578999999999999999999999999999997779999998871       11   122211222              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-CChHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPFQIEKD  238 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-~~~~~l~~~  238 (245)
                                          ++.+|++++++++|+....|.|. .+.+.|...
T Consensus        76 --------------------v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f  108 (109)
T cd02993          76 --------------------LKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF  108 (109)
T ss_pred             --------------------CCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence                                34459999999888878888885 567666544

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.31  E-value=1.1e-11  Score=90.68  Aligned_cols=85  Identities=14%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++||.||++||++|+...|.+.++.+++++. +.++.|++|.        ...+   +.++|+              
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~--------~~~l---~~~~~~--------------   81 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW--------PQGK---CRKQKH--------------   81 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC--------ChHH---HHHhcC--------------
Confidence            4679999999999999999999999999999765 8899998872        2222   212333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                                          |.+.|++.++ ++|+...+|.|..+.+.|...
T Consensus        82 --------------------I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~  112 (113)
T cd03006          82 --------------------FFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF  112 (113)
T ss_pred             --------------------CcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence                                3344988888 789888889998888877654

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.31  E-value=1.3e-11  Score=89.01  Aligned_cols=88  Identities=15%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      ++++++|.||++||++|+.+.|.++++++++++.+  +.+..++++        ..   .+.. ++++            
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--------~~---~~~~-~~~~------------   69 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--------AY---SSIA-SEFG------------   69 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--------cC---HhHH-hhcC------------
Confidence            45799999999999999999999999999997654  666667654        11   1222 2322            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                            |.++|++++++ +| +..++.|..+.+++.+.++++
T Consensus        70 ----------------------I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          70 ----------------------VRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             ----------------------CccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence                                  44559999994 45 446788888888888888764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.31  E-value=9.7e-12  Score=88.89  Aligned_cols=89  Identities=19%  Similarity=0.136  Sum_probs=69.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC-cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g-~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      ++++++|.||++||+.|+...+.++++.+.+++.+ +.++.+.+|.           ..+.. ++++             
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~-~~~~-------------   66 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----------EKDLA-SRFG-------------   66 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----------hHHHH-HhCC-------------
Confidence            68899999999999999999999999999987653 7777776651           12222 3333             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                           |...|+++++++++. +..+.|..+.+++...|++.
T Consensus        67 ---------------------i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        67 ---------------------VSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             ---------------------CCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence                                 334499999998887 67888988888998888764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.30  E-value=1.2e-11  Score=89.75  Aligned_cols=88  Identities=15%  Similarity=0.164  Sum_probs=67.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .|+++||.||++||++|+...|.+.++.+++.+. +.++.|++|.      +   ...+.+ ++++              
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~------~---~~~~~~-~~~~--------------   71 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE------D---KNKPLC-GKYG--------------   71 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc------c---ccHHHH-HHcC--------------
Confidence            4789999999999999999999999999998754 8899998872      1   112333 3332              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCC----cEEEecCCCCChHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG----KVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G----~i~~~~~g~~~~~~l~~~l  239 (245)
                                          |...|++++++++|    ++...|.|..+.+++.+.|
T Consensus        72 --------------------i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          72 --------------------VQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             --------------------CCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence                                34449999998876    3567888888888887765

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.30  E-value=7.2e-12  Score=89.74  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++|.||++||++|+...|.++++++++++  .++.++.|.+|        ...   +.+ ++++               
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--------~~~---~~~-~~~~---------------   70 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--------QHR---ELC-SEFQ---------------   70 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--------CCh---hhH-hhcC---------------
Confidence            599999999999999999999999999976  34888888766        111   222 2222               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                                         |...|+++++ ++|+.+.++.|..+.+++.+.
T Consensus        71 -------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~  101 (102)
T cd03005          71 -------------------VRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF  101 (102)
T ss_pred             -------------------CCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence                               3444998888 788888899998887777654

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.30  E-value=2e-11  Score=87.01  Aligned_cols=85  Identities=9%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|+++++||++||+.|+...+.+.++.+++.+ ++.++.|+.|        ...   +.. ++++              
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d--------~~~---~l~-~~~~--------------   64 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID--------EDQ---EIA-EAAG--------------   64 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC--------CCH---HHH-HHCC--------------
Confidence            578999999999999999999999999999875 3888888876        222   222 3322              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                                          |.++|+++++ ++|+++.++.|..+.+++.+.|
T Consensus        65 --------------------v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          65 --------------------IMGTPTVQFF-KDKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             --------------------CeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence                                3344999999 5899999999988888877665

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.28  E-value=6e-11  Score=88.13  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=70.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .|+.++|+|+++|||+|+...|.|.++.++   .++.+..|++|.....+..+.+++.++. ++++....          
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~~----------   87 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPTS----------   87 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHH-HHcCCccc----------
Confidence            467899999999999999999999999887   2378999998832221222334666776 56553221          


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-CChHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPFQIEKDI  239 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-~~~~~l~~~l  239 (245)
                                          |.++|+++++ ++|+++.+..|. .+.++|++.+
T Consensus        88 --------------------i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        88 --------------------FMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             --------------------CCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence                                3445988877 899999999884 3566666554

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR01068 thioredoxin thioredoxin

Probab=99.24  E-value=6.8e-11  Score=84.17  Aligned_cols=88  Identities=22%  Similarity=0.319  Sum_probs=69.5

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++++|+||++||+.|+...+.|+++.+++.++ +.++.|..|        ...   ++. ++++               
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~--------~~~---~~~-~~~~---------------   65 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVD--------ENP---DIA-AKYG---------------   65 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECC--------CCH---HHH-HHcC---------------
Confidence            569999999999999999999999999888754 999999876        221   222 3332               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                         |...|+++++ ++|+++.++.|..+.+++.+.|++.+
T Consensus        66 -------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        66 -------------------IRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             -------------------CCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence                               3334999999 78999899989888889998888753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.24  E-value=6e-11  Score=84.84  Aligned_cols=87  Identities=24%  Similarity=0.343  Sum_probs=71.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++||.||++||+.|+...|.|.++.+++.+ ++.++.|.++        ..   .+.+ ++++              
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~--------~~---~~l~-~~~~--------------   68 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD--------EN---KELC-KKYG--------------   68 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT--------TS---HHHH-HHTT--------------
T ss_pred             cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhh--------cc---chhh-hccC--------------
Confidence            368999999999999999999999999999987 6999999876        12   3333 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                          |..+|+++++ ++|+...++.|..+.++|.+.|++
T Consensus        69 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   69 --------------------VKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             --------------------CSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred             --------------------CCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence                                3344988877 788888899999999999999886

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.23  E-value=4.1e-11  Score=92.12  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +++++||+||++||++|+...|.++++.+++.+.+++++.|++|+       ..    +.+ +++++...          
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~----~la-~~~~V~~~----------  103 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FP----NVA-EKFRVSTS----------  103 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CH----HHH-HHcCceec----------
Confidence            467999999999999999999999999999987679999999882       22    233 44443110          


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                           |             .++.+|+++++ ++|+.+.++.|
T Consensus       104 -----~-------------~v~~~PT~ilf-~~Gk~v~r~~G  126 (152)
T cd02962         104 -----P-------------LSKQLPTIILF-QGGKEVARRPY  126 (152)
T ss_pred             -----C-------------CcCCCCEEEEE-ECCEEEEEEec
Confidence                 0             03445987777 69999988876

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.22  E-value=9.1e-11  Score=86.58  Aligned_cols=88  Identities=11%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             CCEEEEEEecCCCCC--Ch--HHHHHHHHHHHHh-hhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          108 GKVLLIVNVASRCGL--TP--SNYSELSHLYEKY-KTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       108 gk~vll~F~~t~C~~--C~--~~~~~l~~l~~~~-~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      ..++|++||+.||++  |+  ...|.|.++.+++ ++.++.++.|++|+        .   .+.+ ++|+          
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~---~~La-~~~~----------   84 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------D---AKVA-KKLG----------   84 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------C---HHHH-HHcC----------
Confidence            349999999999987  99  7778899988887 23359999999872        2   2333 4444          


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                              |.++|+++|+ +||+++. +.|..+.+.+.+.|++++
T Consensus        85 ------------------------I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          85 ------------------------LDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ------------------------CccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence                                    4445988888 7999887 999999999999999886

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.22  E-value=5.7e-11  Score=109.87  Aligned_cols=96  Identities=16%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      .+.+||+|+|+||++||++|+.+.+..   .+++++++  ++.++.|++|+       ..++..++. ++++        
T Consensus       470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~~~--------  531 (571)
T PRK00293        470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KHYN--------  531 (571)
T ss_pred             HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HHcC--------
Confidence            345689999999999999999877664   56777774  48888888762       233445555 4443        


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE--EecCCCCChHHHHHHHHHHh
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI--ERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~--~~~~g~~~~~~l~~~l~~ll  243 (245)
                                                +..+|+++++|+||+++  .++.|..+.+++.+.|+++.
T Consensus       532 --------------------------v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        532 --------------------------VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             --------------------------CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence                                      33349999999999984  68889999999999998864

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.21  E-value=2.1e-11  Score=89.91  Aligned_cols=46  Identities=15%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ...+||+|||+||++||++|+.+.+.+.+..+.... +..++.|.+|
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd   60 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE   60 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence            345789999999999999999999999987665543 3567777766

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.21  E-value=9.5e-11  Score=95.66  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=68.7

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++++|+||++||++|+...|.++++.+++++. +.+..|.++        ..   .+.. ++|+               
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~--------~~---~~l~-~~~~---------------  103 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT--------RA---LNLA-KRFA---------------  103 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc--------cc---HHHH-HHcC---------------
Confidence            579999999999999999999999999999864 777777655        11   2233 3433               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                         |..+|++++++ +|+++..+.|..+.+++.+.+++.+
T Consensus       104 -------------------I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443        104 -------------------IKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             -------------------CCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence                               44459999996 7999888888888999988887664

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.21  E-value=4.6e-11  Score=86.77  Aligned_cols=86  Identities=15%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-----CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-----GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-----g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      .+++++|+||++||++|+...|.+.++.+++++.     .+.+..|++|        ..   .+.+ ++++         
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--------~~---~~l~-~~~~---------   75 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--------KE---SDIA-DRYR---------   75 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--------CC---HHHH-HhCC---------
Confidence            4679999999999999999999999999887532     3777788776        22   2233 4433         


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCc-EEEecCCCCChHHHHHHH
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~-i~~~~~g~~~~~~l~~~l  239 (245)
                                               |..+|+++++ ++|+ +...+.|..+.++|.+.|
T Consensus        76 -------------------------v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          76 -------------------------INKYPTLKLF-RNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             -------------------------CCcCCEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence                                     3444988888 7888 457888888887776653

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.20  E-value=7.6e-11  Score=84.62  Aligned_cols=87  Identities=23%  Similarity=0.283  Sum_probs=62.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      ++++++|.||++||++|+...+.++++.+++++. .+.++.|.++.         +....+. ++++             
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---------~~~~~~~-~~~~-------------   72 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK---------PEHDALK-EEYN-------------   72 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC---------CccHHHH-HhCC-------------
Confidence            5679999999999999999999999999998753 36666776651         0112222 3322             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                                           |..+|+++++ ++|+++.++.|..+.+++.+.
T Consensus        73 ---------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          73 ---------------------VKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF  103 (104)
T ss_pred             ---------------------CccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence                                 3344976555 789989999998888877654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.17  E-value=1.7e-10  Score=81.87  Aligned_cols=83  Identities=14%  Similarity=0.235  Sum_probs=60.8

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++++|+||++||++|+.+.+.|.++.+++. .++.++.|..+        .   ..+.. ++++               
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~--------~---~~~~~-~~~~---------------   65 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAE--------E---LPEIS-EKFE---------------   65 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEccc--------c---CHHHH-HhcC---------------
Confidence            6899999999999999999999999999873 34788887544        1   12233 3333               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                                         +...|+++++ ++|+++.+..|. ++++|.+.|
T Consensus        66 -------------------i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          66 -------------------ITAVPTFVFF-RNGTIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             -------------------CccccEEEEE-ECCEEEEEEeCC-CHHHHHHhh
Confidence                               3334988888 589999998886 455666544

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.16  E-value=3.7e-10  Score=81.74  Aligned_cols=43  Identities=14%  Similarity=0.006  Sum_probs=39.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+|+|||+|+++||++|+..-|.|.++.+++++. +.++.|.+|
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD   55 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD   55 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence            6899999999999999999999999999999765 888888776

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.16  E-value=1.2e-10  Score=83.56  Aligned_cols=87  Identities=16%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+++++|.||++||++|+...+.+.++.++++. .++.++.|.++        ..  ..++. ++++             
T Consensus        17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--------~~--~~~~~-~~~~-------------   72 (105)
T cd02998          17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD--------EA--NKDLA-KKYG-------------   72 (105)
T ss_pred             CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC--------Cc--chhhH-HhCC-------------
Confidence            357999999999999999999999999999873 34788888766        10  12223 3322             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                                           |.++|++++++++|+....+.|..+.+++.+.
T Consensus        73 ---------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~  104 (105)
T cd02998          73 ---------------------VSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF  104 (105)
T ss_pred             ---------------------CCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence                                 33449999998888888888888888777664

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.14  E-value=9.4e-11  Score=83.04  Aligned_cols=86  Identities=15%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhh-hCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      ++++++|.||++||+.|+...+.+.++.+.++ +.++.++.|+++        .   ..+.. ++++             
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~---~~~~~-~~~~-------------   68 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--------A---NNDLC-SEYG-------------   68 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--------c---hHHHH-HhCC-------------
Confidence            45699999999999999999999999999985 345888888766        2   22333 3433             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                                           |...|++++++++|+...++.|..+.+++.+.
T Consensus        69 ---------------------i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~  100 (101)
T cd02961          69 ---------------------VRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF  100 (101)
T ss_pred             ---------------------CCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence                                 33349999999888888889888777777654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.12  E-value=6.2e-10  Score=79.74  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=64.1

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++++|.||++||++|+...+.+.++.+++.+. +.++.+.+|        ..   .+.. ++++               
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~--------~~---~~~~-~~~~---------------   69 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD--------VH---QSLA-QQYG---------------   69 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc--------ch---HHHH-HHCC---------------
Confidence            567999999999999999999999999998764 888888776        22   2222 3333               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                                         |...|++++++++.+....+.|..+.+++.+++
T Consensus        70 -------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          70 -------------------VRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             -------------------CCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence                               334499999976546667888888888777654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PTZ00051 thioredoxin; Provisional

Probab=99.11  E-value=5.2e-10  Score=79.56  Aligned_cols=80  Identities=13%  Similarity=0.173  Sum_probs=59.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++++|+||++||++|+...+.+.++.+++.+  +.++.|+.|        .   ..+.+ ++++              
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~--------~---~~~~~-~~~~--------------   68 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD--------E---LSEVA-EKEN--------------   68 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc--------c---hHHHH-HHCC--------------
Confidence            468999999999999999999999999998753  788888765        1   12333 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE  236 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~  236 (245)
                                          |...|+++++ ++|+++.++.|. ..++|.
T Consensus        69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         69 --------------------ITSMPTFKVF-KNGSVVDTLLGA-NDEALK   96 (98)
T ss_pred             --------------------CceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence                                3334986655 899999999985 455543

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.10  E-value=4.6e-10  Score=82.26  Aligned_cols=73  Identities=15%  Similarity=0.121  Sum_probs=56.3

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++++|+||++||++|+...|.|.++.+++.+  +.++.|..|          + . +.+ ++++               
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~----------~-~-~l~-~~~~---------------   73 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE----------K-A-FLV-NYLD---------------   73 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch----------h-h-HHH-HhcC---------------
Confidence            58999999999999999999999999999864  788888765          1 1 333 4433               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                                         |..+|+++++ ++|+++.+..|..
T Consensus        74 -------------------i~~~Pt~~~f-~~G~~v~~~~G~~   96 (113)
T cd02957          74 -------------------IKVLPTLLVY-KNGELIDNIVGFE   96 (113)
T ss_pred             -------------------CCcCCEEEEE-ECCEEEEEEecHH
Confidence                               3444977666 8899999887643

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.09  E-value=7.3e-10  Score=80.19  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             CCCEEEEEEecCC--CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASR--CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~--C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      .|.++||.||++|  ||.|....|.|.++.++|.++ +.++.|++|+        ..   +.+ .+|+            
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~--------~~---~la-~~f~------------   80 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD--------EQ---ALA-ARFG------------   80 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC--------CH---HHH-HHcC------------
Confidence            5678899999997  999999999999999999876 8888998872        22   333 4433            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE  236 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~  236 (245)
                                            |..+|+++++ +||+++.+..|..+.+++.
T Consensus        81 ----------------------V~sIPTli~f-kdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          81 ----------------------VLRTPALLFF-RDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             ----------------------CCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence                                  4455987777 8999999999988887765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.07  E-value=4.8e-10  Score=80.38  Aligned_cols=44  Identities=23%  Similarity=0.216  Sum_probs=38.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D  150 (245)
                      .+++++|.||++||++|+...+.+.++.+++++ ..+.+..|+++
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~   61 (104)
T cd02995          17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT   61 (104)
T ss_pred             CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence            358999999999999999999999999999877 34777778765

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.06  E-value=1.5e-09  Score=79.51  Aligned_cols=88  Identities=16%  Similarity=0.263  Sum_probs=65.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +++.++++||++||++|+...+.|.++.+++ + .+++..|..|.        .   .+.+ ++|+              
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~--------~---~~l~-~~~~--------------   72 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDE--------D---KEKA-EKYG--------------   72 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCc--------C---HHHH-HHcC--------------
Confidence            3457888899999999999999999999887 3 38888888772        1   1232 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCC---CcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN---GKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~---G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |.+.|++++++.+   |++  ++.|..+.+++.+.|+.+++
T Consensus        73 --------------------v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          73 --------------------VERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             --------------------CCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHh
Confidence                                4445998888653   333  57777788899999999876

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.04  E-value=1.9e-09  Score=79.03  Aligned_cols=42  Identities=7%  Similarity=-0.099  Sum_probs=37.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++++++|+||++||++|+...|.|.++.+++.+  +.++.|..|
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~   62 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE   62 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence            457999999999999999999999999998864  899999876

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.04  E-value=3e-09  Score=79.00  Aligned_cols=45  Identities=11%  Similarity=0.091  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHH-H--HHHHHHhhhCCcEEEEEecC
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~-l--~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .-+||+|||+|+++||+.|+.+-+. +  .++.+.+.+ ++.+|-|..|
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~   59 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE   59 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence            3468999999999999999977653 2  245555433 4777777655

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.03  E-value=1.3e-09  Score=97.53  Aligned_cols=93  Identities=18%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+++++||+||++||++|+.+.|.+.++.+++++.++.++.|.+|.        .+  .+.+.++++             
T Consensus       369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~--------~~--~~~~~~~~~-------------  425 (463)
T TIGR00424       369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG--------DQ--KEFAKQELQ-------------  425 (463)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC--------Cc--cHHHHHHcC-------------
Confidence            3678999999999999999999999999999988789999998872        11  122212333             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC-CCCChHHHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP-PTTSPFQIEKDIQKL  242 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~-g~~~~~~l~~~l~~l  242 (245)
                                           |..+|+++++.+++.-...|. |..+.+.|...|+.+
T Consensus       426 ---------------------I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       426 ---------------------LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             ---------------------CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence                                 344498888855543334565 467888888888764

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.00  E-value=9.2e-10  Score=100.04  Aligned_cols=105  Identities=17%  Similarity=0.101  Sum_probs=76.5

Q ss_pred             EEcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC-cEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011           93 VKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTR  170 (245)
Q Consensus        93 l~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g-~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~  170 (245)
                      ++.+.|+.+.-. .-.||++||+||++||++|+...|.++++.+++++.+ +.+..|++|.        .+..   + ++
T Consensus       359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------~~~~---~-~~  426 (477)
T PTZ00102        359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------NETP---L-EE  426 (477)
T ss_pred             eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC--------Cccc---h-hc
Confidence            555556555432 2358899999999999999999999999999987643 6666676551        1100   1 11


Q ss_pred             cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       171 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      ++                                  +.++|++++++++|++..++.|..+.+++.+.|++..
T Consensus       427 ~~----------------------------------v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  465 (477)
T PTZ00102        427 FS----------------------------------WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA  465 (477)
T ss_pred             CC----------------------------------CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence            11                                  3445999999988887778999999999999998765

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.99  E-value=4.8e-09  Score=71.92  Aligned_cols=81  Identities=11%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcch
Q 026011          111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAP  190 (245)
Q Consensus       111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~  190 (245)
                      .+..||++||++|+...+.|+++.++++.. +.++.|+.++       ..+    .. ++++                  
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~----~~-~~~~------------------   50 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQ----KA-MEYG------------------   50 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHH----HH-HHcC------------------
Confidence            466799999999999999999999998754 8888887762       221    12 2222                  


Q ss_pred             hhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          191 VYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                      +..+|++++   +|+.  ++.|..+.+++.+.|+++|
T Consensus        51 ----------------v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~   82 (82)
T TIGR00411        51 ----------------IMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL   82 (82)
T ss_pred             ----------------CccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence                            334498765   6664  6678778899999888764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.97  E-value=4.3e-09  Score=83.07  Aligned_cols=41  Identities=10%  Similarity=0.047  Sum_probs=36.8

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +++|||+||++||++|+...+.|.++.++|.+  +.++-|++|
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d  123 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS  123 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence            45999999999999999999999999999863  889999765

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.96  E-value=1.8e-09  Score=79.46  Aligned_cols=44  Identities=11%  Similarity=0.102  Sum_probs=39.9

Q ss_pred             CCCCEEEEEEec-------CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          106 FKGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       106 ~~gk~vll~F~~-------t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+|++++|+||+       +||++|+...|.|.++.++++++ +.++.|.+|
T Consensus        19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd   69 (119)
T cd02952          19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVG   69 (119)
T ss_pred             cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcC
Confidence            358899999999       99999999999999999999754 899999887

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.96  E-value=3.1e-09  Score=86.12  Aligned_cols=146  Identities=17%  Similarity=0.212  Sum_probs=102.2

Q ss_pred             ccccccccCcccCeEEEcCCCCe-eecCCC-C-CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCC
Q 026011           78 VHATAATEKSLYDFTVKDIDGKD-VPLSKF-K-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG  154 (245)
Q Consensus        78 ~~~~~~~g~~~pdf~l~~~~G~~-v~l~~~-~-gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~  154 (245)
                      ....+..|..+||..+.+++|+. .++-|+ + ++|+||+|.+-.||+-...+.+++++.++|.+. .+++.|-+.+-..
T Consensus        69 l~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp  147 (237)
T PF00837_consen   69 LFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP  147 (237)
T ss_pred             cccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence            44566789999999999999998 999998 3 579999999888999999999999999999986 6677665542111


Q ss_pred             -------------CCCCChH---HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC
Q 026011          155 -------------QEPGSNP---EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK  218 (245)
Q Consensus       155 -------------~~~~~~~---~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~  218 (245)
                                   +.+.+-+   ...+.. .++....|++  .|.........|+..-              -.+||| +
T Consensus       148 sDgW~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~--vD~mdN~~~~~YgA~P--------------eRlyIi-~  209 (237)
T PF00837_consen  148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIV--VDTMDNNFNKAYGALP--------------ERLYII-Q  209 (237)
T ss_pred             CCCccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEE--EEccCCHHHHHhCCCc--------------ceEEEE-E
Confidence                         1112222   222223 2334678888  4444455667776421              246677 6


Q ss_pred             CCcEEEecC-CC--CChHHHHHHHHHH
Q 026011          219 NGKVIERYP-PT--TSPFQIEKDIQKL  242 (245)
Q Consensus       219 ~G~i~~~~~-g~--~~~~~l~~~l~~l  242 (245)
                      ||+|++... |.  .+++++++.|++.
T Consensus       210 ~gkv~Y~Gg~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  210 DGKVVYKGGPGPFGYSPEELREWLEKY  236 (237)
T ss_pred             CCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence            999987752 22  2678899988874

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.95  E-value=1.4e-08  Score=74.46  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHH-H--HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~-l--~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      +.-++|+++|+|++.||+.|...... |  .++.+.+.+ .+.++.+.++        + .+..+++ +.++        
T Consensus        13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~~~--------   73 (114)
T cd02958          13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QSYK--------   73 (114)
T ss_pred             HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HHhC--------
Confidence            33468999999999999999976653 2  234444443 3555555543        2 2234454 3333        


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC-CCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~-~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                +...|++++||+ +|+++.+..|..+++++...|++.+.
T Consensus        74 --------------------------~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          74 --------------------------VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             --------------------------ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence                                      222399999999 89999999999999999999988764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PLN02309 5'-adenylylsulfate reductase

Probab=98.93  E-value=5.6e-09  Score=93.46  Aligned_cols=92  Identities=21%  Similarity=0.244  Sum_probs=68.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++|++||+||++||++|+.+.|.+.++.+++.+.++.++.|++|.       .   ..+.+.++++              
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~---~~~la~~~~~--------------  419 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------D---QKEFAKQELQ--------------  419 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------c---chHHHHhhCC--------------
Confidence            578999999999999999999999999999988789999998761       1   1233312222              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC-CCCChHHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP-PTTSPFQIEKDIQKL  242 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~-g~~~~~~l~~~l~~l  242 (245)
                                          |+..|+++++.++.+....|. +..+.+.|..+|+.+
T Consensus       420 --------------------I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        420 --------------------LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             --------------------CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence                                444599988865554444565 456888899988875

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.92  E-value=9.6e-09  Score=71.17  Aligned_cols=82  Identities=21%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCc
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT  188 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~  188 (245)
                      ++++|.||++||+.|....+.++++.++  ..++.++.|+++        ..   .+.. ++++                
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~--------~~---~~~~-~~~~----------------   60 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD--------EN---PELA-EEYG----------------   60 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC--------CC---hhHH-HhcC----------------
Confidence            7999999999999999999999999888  345999999876        21   1222 2322                


Q ss_pred             chhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                                        +...|+++++ ++|+++..+.|..+.+++.+.|
T Consensus        61 ------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          61 ------------------VRSIPTFLFF-KNGKEVDRVVGADPKEELEEFL   92 (93)
T ss_pred             ------------------cccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence                              3334988888 5788888888887777777655

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.92  E-value=9.6e-09  Score=82.18  Aligned_cols=41  Identities=12%  Similarity=0.069  Sum_probs=36.8

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +++|||+||++||++|+...+.|.++.++|.+  +.++.|..|
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad  142 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST  142 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence            46999999999999999999999999999964  889988754

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.92  E-value=7.4e-09  Score=76.00  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=36.3

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-C-cEEEEEecC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-G-FEILAFPCN  150 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g-~~vv~Vs~D  150 (245)
                      +++++|.||++||++|+.+.+.++++.+++++. + +.+..|+++
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~   63 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA   63 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence            479999999999999999999999999988753 2 677777654

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.5e-08  Score=81.99  Aligned_cols=92  Identities=23%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      +|+.-.+|.|+|+|++.||++|+...|.+.++..+|++  ..++-|.+|           +.+..+ ..++         
T Consensus        15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~ta-a~~g---------   71 (288)
T KOG0908|consen   15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTA-ATNG---------   71 (288)
T ss_pred             hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchh-hhcC---------
Confidence            34445678999999999999999999999999999954  788888665           334433 2222         


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                               |+..|+++++ .||+-+..+.|. ++.-|++.+.+.+
T Consensus        72 -------------------------V~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~~  106 (288)
T KOG0908|consen   72 -------------------------VNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKYA  106 (288)
T ss_pred             -------------------------cccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHHh
Confidence                                     4555865555 899999998886 5667888877764

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.80  E-value=3.9e-08  Score=70.42  Aligned_cols=91  Identities=11%  Similarity=0.099  Sum_probs=65.7

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      |+++++.|++.||++|....+.+.++.++++++ +.++.|+.|           +..+++ +.+++.-            
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~-----------~~~~~~-~~~~i~~------------   66 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD-----------DFGRHL-EYFGLKE------------   66 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH-----------hhHHHH-HHcCCCh------------
Confidence            789999999999999999999999999999876 888888655           223444 5545310            


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          ...|++++++.+ |+......+..+.+.+.+.|+.++
T Consensus        67 --------------------~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~~  103 (103)
T cd02982          67 --------------------EDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL  103 (103)
T ss_pred             --------------------hhCCEEEEEecccccccCCCccccCHHHHHHHHHhhC
Confidence                                012888888763 554333344457888988887653

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.80  E-value=1.3e-08  Score=91.87  Aligned_cols=90  Identities=19%  Similarity=0.261  Sum_probs=68.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      ++++++|.||++||++|+...|.+.++.+.+.+.+  +.++.|.+++        .   .+.+ ++++            
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~------------   72 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE--------E---KDLA-QKYG------------   72 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--------c---HHHH-HhCC------------
Confidence            56789999999999999999999999999887765  7788887761        1   2233 3433            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                            |...|+++++ ++|+. +..+.|..+.+.+.+.+++.+
T Consensus        73 ----------------------i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~  109 (462)
T TIGR01130        73 ----------------------VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS  109 (462)
T ss_pred             ----------------------CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence                                  3334987777 67776 678888888888888887765

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=98.74  E-value=2.9e-08  Score=90.29  Aligned_cols=90  Identities=18%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +++.++|.||++||++|+...|.+.++.+.+.+.+  +.+..|.++        ..   .+.+ ++++            
T Consensus        48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--------~~---~~l~-~~~~------------  103 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--------EE---MELA-QEFG------------  103 (477)
T ss_pred             cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC--------CC---HHHH-HhcC------------
Confidence            57899999999999999999999999998887543  666666655        11   2233 3433            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                            |..+|++++++.++. + .|.|..+.+.+.+.+++++.
T Consensus       104 ----------------------i~~~Pt~~~~~~g~~-~-~y~g~~~~~~l~~~l~~~~~  139 (477)
T PTZ00102        104 ----------------------VRGYPTIKFFNKGNP-V-NYSGGRTADGIVSWIKKLTG  139 (477)
T ss_pred             ----------------------CCcccEEEEEECCce-E-EecCCCCHHHHHHHHHHhhC
Confidence                                  334499999965544 4 78888899999999888753

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.71  E-value=6.7e-08  Score=65.57  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=29.8

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF  147 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V  147 (245)
                      .|.||++||++|....+.+.++.+++..+ ++++-|
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v   36 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV   36 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe
Confidence            37899999999999999999999998654 677666

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PTZ00062 glutaredoxin; Provisional

Probab=98.68  E-value=1.3e-07  Score=76.09  Aligned_cols=76  Identities=11%  Similarity=-0.031  Sum_probs=58.7

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCc
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT  188 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~  188 (245)
                      +.+|++||++||++|+.+.+.|.++.++|.+  +.++.|..|                    ++                
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d--------------------~~----------------   59 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA--------------------DA----------------   59 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc--------------------cC----------------
Confidence            4678999999999999999999999999965  788877421                    11                


Q ss_pred             chhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                        |..+|+++++ ++|+++.++.|. ++.++...++++
T Consensus        60 ------------------V~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~   93 (204)
T PTZ00062         60 ------------------NNEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRGW   93 (204)
T ss_pred             ------------------cccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHHH
Confidence                              3444988877 799999999886 466666666554

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.67  E-value=1.3e-07  Score=77.12  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEEec---CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          105 KFKGKVLLIVNVA---SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       105 ~~~gk~vll~F~~---t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      ..++...++.|++   +||++|+...|.+.++.+++.+  +++..+.+|.         ++..+.+ ++|+         
T Consensus        16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~---------~~~~~l~-~~~~---------   74 (215)
T TIGR02187        16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT---------PEDKEEA-EKYG---------   74 (215)
T ss_pred             hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC---------cccHHHH-HHcC---------
Confidence            3455555666777   9999999999999999998843  6666666551         1123333 4433         


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE-EecCCCCChHHHHHHHHHHh
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~-~~~~g~~~~~~l~~~l~~ll  243 (245)
                                               |..+|+++++ ++|+.+ .++.|..+.+++.+.|+.++
T Consensus        75 -------------------------V~~~Pt~~~f-~~g~~~~~~~~G~~~~~~l~~~i~~~~  111 (215)
T TIGR02187        75 -------------------------VERVPTTIIL-EEGKDGGIRYTGIPAGYEFAALIEDIV  111 (215)
T ss_pred             -------------------------CCccCEEEEE-eCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence                                     4445988887 467776 48889888888888888775

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.63  E-value=2e-07  Score=75.90  Aligned_cols=101  Identities=24%  Similarity=0.236  Sum_probs=71.3

Q ss_pred             eecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      -.+.++.+++-|++|+...|++|..+.|.|+.+.++|   |+.|+.||+|.-+.+                  .||... 
T Consensus       113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~------------------~fp~~~-  170 (215)
T PF13728_consen  113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIP------------------SFPNPR-  170 (215)
T ss_pred             HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCc------------------CCCCCC-
Confidence            3445667788999999999999999999999999987   599999999831100                  111110 


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC-cEEEecCCCCChHHHHHHH
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G-~i~~~~~g~~~~~~l~~~l  239 (245)
                        .+ ....+.++             |..+|++||+++++ ++.-...|..+.++|.+.|
T Consensus       171 --~~-~g~~~~l~-------------v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  171 --PD-PGQAKRLG-------------VKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             --CC-HHHHHHcC-------------CCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence              00 11111222             55669999999988 6666678888888887754

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.58  E-value=4.2e-07  Score=67.72  Aligned_cols=25  Identities=12%  Similarity=0.227  Sum_probs=21.8

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHH
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSEL  130 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l  130 (245)
                      -+||+|+|+|+++||++|+..-..+
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~   45 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAF   45 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence            3689999999999999999877654

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.57  E-value=4.2e-07  Score=75.51  Aligned_cols=105  Identities=13%  Similarity=0.156  Sum_probs=74.8

Q ss_pred             ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      .+.++.+++-|++|+...|+.|....|.|+.+.++|   |+.|+.||+|.-+.+                  .||... .
T Consensus       144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p------------------~fp~~~-~  201 (256)
T TIGR02739       144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIP------------------GLPNSR-S  201 (256)
T ss_pred             HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCC------------------CCCCcc-C
Confidence            344556789999999999999999999999999987   599999999931111                  122210 0


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHhh
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      | .|  ....++             |..+|++||++++ +++.-...|..+.++|.+.|..++.
T Consensus       202 d-~g--qa~~l~-------------v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       202 D-SG--QAQHLG-------------VKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT  249 (256)
T ss_pred             C-hH--HHHhcC-------------CccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence            1 00  111111             5556999999998 6666677899999999998877653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.55  E-value=2e-07  Score=84.17  Aligned_cols=89  Identities=21%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-C-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-Q-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      .++.+||.||++||++|+...|.++++.+.+++ . ++.++.|+++.        .+    ..  .              
T Consensus       363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~--------n~----~~--~--------------  414 (462)
T TIGR01130       363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA--------ND----VP--P--------------  414 (462)
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC--------Cc----cC--C--------------
Confidence            478999999999999999999999999999987 2 58888887651        10    00  0              


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll  243 (245)
                             ++             +..+|++++++++++. ...+.|..+.+.+.+.|++..
T Consensus       415 -------~~-------------i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  454 (462)
T TIGR01130       415 -------FE-------------VEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA  454 (462)
T ss_pred             -------CC-------------ccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence                   11             3444999999766652 356778888889998887653

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=7.5e-07  Score=66.76  Aligned_cols=132  Identities=23%  Similarity=0.247  Sum_probs=88.9

Q ss_pred             ccccCcccCeEEEcCCC-------CeeecCC-CCCCEEEE-EEecCCCCCChH-HHHHHHHHHHHhhhCCc-EEEEEecC
Q 026011           82 AATEKSLYDFTVKDIDG-------KDVPLSK-FKGKVLLI-VNVASRCGLTPS-NYSELSHLYEKYKTQGF-EILAFPCN  150 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G-------~~v~l~~-~~gk~vll-~F~~t~C~~C~~-~~~~l~~l~~~~~~~g~-~vv~Vs~D  150 (245)
                      ..+|+++|..+++...+       ..++..+ ++||.|+| -..+.+.|.|.. ++|...+++++++++|+ +|+.||+|
T Consensus         3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN   82 (165)
T COG0678           3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN   82 (165)
T ss_pred             cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence            35799999988887522       2344445 48875544 455889999986 89999999999999998 58889988


Q ss_pred             CCCCCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          151 QFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                              +...+..|. +..+..  ..++  .|.++. ..+..+.+-...+  +|..+...+.-.|| +||.|.+.+..
T Consensus        83 --------D~FVm~AWa-k~~g~~~~I~fi--~Dg~ge-FTk~~Gm~~d~~~--~g~G~RS~RYsmvV-~nGvV~~~~iE  147 (165)
T COG0678          83 --------DAFVMNAWA-KSQGGEGNIKFI--PDGNGE-FTKAMGMLVDKSD--LGFGVRSWRYSMVV-ENGVVEKLFIE  147 (165)
T ss_pred             --------cHHHHHHHH-HhcCCCccEEEe--cCCCch-hhhhcCceeeccc--CCcceeeeeEEEEE-eCCeEEEEEec
Confidence                    889999999 444443  4455  444443 3444443332222  22235555666677 89999876643

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.52  E-value=1.1e-06  Score=61.46  Aligned_cols=46  Identities=13%  Similarity=0.153  Sum_probs=38.2

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +.++++.+-+..|++.||++|+...+.++++.+++.+  +++..+..|
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~   52 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA   52 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence            3467788888899999999999999999999987753  888888655

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.48  E-value=9e-07  Score=73.15  Aligned_cols=104  Identities=14%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      +.++.+++-|++||...|++|....|.|+.+.++|   |+.|+.||+|.-+.+                  .||... .|
T Consensus       138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~p------------------~fp~~~-~d  195 (248)
T PRK13703        138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVINP------------------LLPDSR-TD  195 (248)
T ss_pred             HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCC------------------CCCCCc-cC
Confidence            45566778899999999999999999999999987   599999999931111                  122210 01


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC-cEEEecCCCCChHHHHHHHHHHhh
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G-~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                       .|.  ...++             |...|++||++++. ++.-...|..+.++|.+.|..+..
T Consensus       196 -~gq--a~~l~-------------v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        196 -QGQ--AQRLG-------------VKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVST  242 (248)
T ss_pred             -hhH--HHhcC-------------CcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence             110  11111             55669999999985 776777899999999998877653

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=4.7e-07  Score=81.10  Aligned_cols=88  Identities=17%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      ...+||.|||+||++|+...|++.+....+++.  .+.+.-|...         . . .+.+ .+|+             
T Consensus        42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---------~-~-~~~~-~~y~-------------   96 (493)
T KOG0190|consen   42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---------E-E-SDLA-SKYE-------------   96 (493)
T ss_pred             CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---------h-h-hhhH-hhhc-------------
Confidence            348899999999999999999999999999987  4666666432         2 2 4555 4544             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                           |.+.|++-|. +||+....|.|....+.+..++++.
T Consensus        97 ---------------------v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq  131 (493)
T KOG0190|consen   97 ---------------------VRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKKQ  131 (493)
T ss_pred             ---------------------CCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHhc
Confidence                                 3334766665 8999888899988899998888764

>smart00594 UAS UAS domain

Probab=98.44  E-value=1.9e-06  Score=63.88  Aligned_cols=89  Identities=8%  Similarity=0.022  Sum_probs=61.2

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      -++|.++|+|++.||+.|.......   .++.+.+.+ ++.++.+.++        +.+ ..+++ +.++          
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~e-g~~l~-~~~~----------   83 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSE-GQRVS-QFYK----------   83 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------Chh-HHHHH-HhcC----------
Confidence            4689999999999999999877653   234444433 4666666544        222 23444 4433          


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC-----cEEEecCCCCChHHHHHHH
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-----KVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G-----~i~~~~~g~~~~~~l~~~l  239 (245)
                                              +...|++.++|++|     +++.+..|..+++++...|
T Consensus        84 ------------------------~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       84 ------------------------LDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             ------------------------cCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence                                    22239999999998     5778889999998888765

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.38  E-value=8.3e-07  Score=80.40  Aligned_cols=96  Identities=14%  Similarity=0.074  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHHH-HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSEL-SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~l-~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      +-++|||+|+|+|+||-.|+..-+.. .+.+...+-.|+..+-+.+.       .++.++.+.. ++++.          
T Consensus       471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lL-k~~~~----------  532 (569)
T COG4232         471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALL-KRLGV----------  532 (569)
T ss_pred             hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHH-HHcCC----------
Confidence            34567999999999999999765544 46666666666888887765       2455677777 56442          


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                              -+.|++++++++|+......|..+.+.+++.|++.
T Consensus       533 ------------------------~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         533 ------------------------FGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             ------------------------CCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence                                    12299999999998877788888999999999875

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.35  E-value=3.6e-06  Score=68.70  Aligned_cols=84  Identities=14%  Similarity=0.053  Sum_probs=55.7

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .++.++|+.||++||++|+...+.++++..+..  .+.+..|..|        ..   .+.+ ++|+             
T Consensus       131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~--------~~---~~~~-~~~~-------------  183 (215)
T TIGR02187       131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN--------EN---PDLA-EKYG-------------  183 (215)
T ss_pred             cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC--------CC---HHHH-HHhC-------------
Confidence            344566667999999999988888888877643  3777767654        21   2232 3333             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                           |.++|+++|. ++|+.   +.|..+.+++.+.|++
T Consensus       184 ---------------------V~~vPtl~i~-~~~~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       184 ---------------------VMSVPKIVIN-KGVEE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             ---------------------CccCCEEEEe-cCCEE---EECCCCHHHHHHHHHh
Confidence                                 3444876664 66763   6677777888877764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.27  E-value=5.1e-07  Score=67.59  Aligned_cols=90  Identities=21%  Similarity=0.318  Sum_probs=49.9

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      ++.+..+..++.|..+|||.|...+|.|.++.+..+  ++++=-|..|           +..+.. ++|.         .
T Consensus        36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd-----------~~~el~-~~~l---------t   92 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRD-----------ENKELM-DQYL---------T   92 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HH-----------HHHHHT-TTTT---------T
T ss_pred             HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEec-----------CChhHH-HHHH---------h
Confidence            344566688889999999999999999999999865  3666556433           333333 2211         0


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                       +|                     ...+|+++++|++|+++.++.+.  |+.+.+.+
T Consensus        93 -~g---------------------~~~IP~~I~~d~~~~~lg~wger--P~~~~~~~  125 (129)
T PF14595_consen   93 -NG---------------------GRSIPTFIFLDKDGKELGRWGER--PKEVQELV  125 (129)
T ss_dssp             --S---------------------S--SSEEEEE-TT--EEEEEESS---HHHH---
T ss_pred             -CC---------------------CeecCEEEEEcCCCCEeEEEcCC--CHHHhhcc
Confidence             00                     23449999999999999998753  44444443

>PHA02125 thioredoxin-like protein

Probab=98.26  E-value=3.7e-06  Score=56.76  Aligned_cols=32  Identities=9%  Similarity=0.121  Sum_probs=24.2

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+++||++|+...+.|.++.       ++++-|+.|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~   33 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTD   33 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCC
Confidence            68899999999999888886541       455666544

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.25  E-value=3.4e-06  Score=57.94  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +||+++|+|+++||+.|+..-..+   .++.+.+.+ ++..+.|..+
T Consensus        16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~   61 (82)
T PF13899_consen   16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD   61 (82)
T ss_dssp             HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence            689999999999999999887766   344444554 4888888765

...

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.15  E-value=1.6e-05  Score=52.15  Aligned_cols=37  Identities=11%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..|+++||++|+...+.|+++.+++.  ++++..|.+|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~   39 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA   39 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence            667999999999999999999876543  4888888766

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=4.1e-05  Score=57.90  Aligned_cols=135  Identities=21%  Similarity=0.244  Sum_probs=86.3

Q ss_pred             cccccccCcccC--eE-EEcCC----CCeeecCCC-CCCEEEE-EEecCCCCCC-hHHHHHHHHHHHHhhhCCc-EEEEE
Q 026011           79 HATAATEKSLYD--FT-VKDID----GKDVPLSKF-KGKVLLI-VNVASRCGLT-PSNYSELSHLYEKYKTQGF-EILAF  147 (245)
Q Consensus        79 ~~~~~~g~~~pd--f~-l~~~~----G~~v~l~~~-~gk~vll-~F~~t~C~~C-~~~~~~l~~l~~~~~~~g~-~vv~V  147 (245)
                      .++..+|+.+|+  ++ +.+..    +.++.++++ +||.++| -..+.+.|.| +.++|-+.+-.++++.+|+ +|+.|
T Consensus         6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv   85 (171)
T KOG0541|consen    6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV   85 (171)
T ss_pred             cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence            466789999999  44 22221    227788885 8875555 3447888884 6889999999999999998 58889


Q ss_pred             ecCCCCCCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe
Q 026011          148 PCNQFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER  225 (245)
Q Consensus       148 s~D~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~  225 (245)
                      |+|        ++..++.|. +.++.+  .-++  .|.+|. ..+.+++........++  ++.-+.-.++ .||+|...
T Consensus        86 SVn--------DpFv~~aW~-k~~g~~~~V~f~--aD~~g~-ftk~lgleld~~d~~~g--~RS~R~a~vv-engkV~~~  150 (171)
T KOG0541|consen   86 SVN--------DPFVMKAWA-KSLGANDHVKFV--ADPAGE-FTKSLGLELDLSDKLLG--VRSRRYALVV-ENGKVTVV  150 (171)
T ss_pred             ecC--------cHHHHHHHH-hhcCccceEEEE--ecCCCc-eeeeccceeeeccccCc--cccccEEEEE-eCCeEEEE
Confidence            998        899999998 777764  3344  344443 33444432211111111  3332333444 79999876


Q ss_pred             cCC
Q 026011          226 YPP  228 (245)
Q Consensus       226 ~~g  228 (245)
                      ...
T Consensus       151 nvE  153 (171)
T KOG0541|consen  151 NVE  153 (171)
T ss_pred             Eec
Confidence            643

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=98.09  E-value=0.00023  Score=54.33  Aligned_cols=143  Identities=21%  Similarity=0.269  Sum_probs=85.9

Q ss_pred             cccCcccCeEEEcC-----CC-----CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHH-hhhCCcEEEEE-ecC
Q 026011           83 ATEKSLYDFTVKDI-----DG-----KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK-YKTQGFEILAF-PCN  150 (245)
Q Consensus        83 ~~g~~~pdf~l~~~-----~G-----~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~-~~~~g~~vv~V-s~D  150 (245)
                      ..|+++|...+.|-     +|     +.++...+.||+-+|...|-.-..-....|-+..+.+. |....++..+| +.|
T Consensus         2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d   81 (160)
T PF09695_consen    2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD   81 (160)
T ss_pred             cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence            35677777776553     33     45666677999988877765544434444555555554 55555666554 443


Q ss_pred             CCCCCCCCChHHHHHHHHHhcCCCcceee-ccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          151 QFGGQEPGSNPEIKEFACTRFKAEFPIFD-KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                      +   -...+.--++..+ ++-...||+-. -.|.+|. ....|+.-..            .-.++|+|++|+|++...|.
T Consensus        82 D---Ai~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~-~~~aW~L~~~------------~SaiiVlDK~G~V~F~k~G~  144 (160)
T PF09695_consen   82 D---AIWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGV-VRKAWQLQEE------------SSAIIVLDKQGKVQFVKEGA  144 (160)
T ss_pred             c---ccccchHHHHHHH-HHhhhhCCCcEEEEcCCCc-eeccccCCCC------------CceEEEEcCCccEEEEECCC
Confidence            1   1112333455555 44343444321 1455543 4555552111            14588999999999999999


Q ss_pred             CChHHHHHHHHHH
Q 026011          230 TSPFQIEKDIQKL  242 (245)
Q Consensus       230 ~~~~~l~~~l~~l  242 (245)
                      ++++++.+.|+-+
T Consensus       145 Ls~~Ev~qVi~Ll  157 (160)
T PF09695_consen  145 LSPAEVQQVIALL  157 (160)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999988754

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.09  E-value=1.9e-05  Score=49.89  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.||..||+.|....+.+.++  ++.+.++.++.++++
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~   37 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVD   37 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcC
Confidence            5789999999999999999998  455567999999987

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.08  E-value=6.7e-06  Score=58.77  Aligned_cols=49  Identities=29%  Similarity=0.390  Sum_probs=41.2

Q ss_pred             eecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ..+...+++++++.||+.||++|+...+.+.++.+++.. ++.++.|...
T Consensus        25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            344444588999999999999999999999999999986 4888888764

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=97.89  E-value=0.00031  Score=56.19  Aligned_cols=125  Identities=17%  Similarity=0.284  Sum_probs=83.6

Q ss_pred             ccCcccCeEEEcCCCCeeecCC-CCCC--EEEEEEe-----cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSK-FKGK--VLLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~-~~gk--~vll~F~-----~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      .+..-.+..+...+|+ ++|.| |.||  .+|.+|.     ...|+.|...+..++....-+..+++.++.||-.     
T Consensus        42 ~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra-----  115 (211)
T PF05988_consen   42 MVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA-----  115 (211)
T ss_pred             CccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC-----
Confidence            4444556888888886 88888 5787  3344444     4579999999999977777778888999999955     


Q ss_pred             CCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         ..+++..|. ++.|-.+|+++..+   .....-|++-..+.+...|      -.+|+-|. |+|.+.|..
T Consensus       116 ---P~~~i~afk-~rmGW~~pw~Ss~g---s~Fn~D~~~~~~~~~~~~g------~svF~Rdg-~~VfhTyst  174 (211)
T PF05988_consen  116 ---PLEKIEAFK-RRMGWTFPWYSSYG---SDFNYDFGVSFDEGGEMPG------LSVFLRDG-GRVFHTYST  174 (211)
T ss_pred             ---CHHHHHHHH-HhcCCCceEEEcCC---CcccccccceeccCCCcee------EEEEEEcC-CEEEEEeec
Confidence               789999998 88899999996533   3333333321111111110      23555554 888777643

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00011  Score=65.23  Aligned_cols=89  Identities=16%  Similarity=0.147  Sum_probs=61.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++.+|.||++||++|....+.+.++...+++. +.+..|.++           +..+.. ++|++             
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~-----------~~~~~~-~~y~i-------------   99 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD-----------EHKDLC-EKYGI-------------   99 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch-----------hhHHHH-HhcCC-------------
Confidence            4568999999999999999999999999998874 666666543           344444 45443             


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                           .+.|+..++.++ .....+.|..+.+.+.+.+.+.+
T Consensus       100 ---------------------~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~  134 (383)
T KOG0191|consen  100 ---------------------QGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKEL  134 (383)
T ss_pred             ---------------------ccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhh
Confidence                                 333777777555 43445566666777766665554

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=1.8e-05  Score=71.15  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEE
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAF  147 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~V  147 (245)
                      .+|-|||.||++||++|+...|.+++|.+.|++. ++.|.-+
T Consensus       383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm  424 (493)
T KOG0190|consen  383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM  424 (493)
T ss_pred             cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence            5789999999999999999999999999999985 3444444

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.79  E-value=0.00021  Score=47.09  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=25.0

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..|+++||++|....+.|.+       .|+.+..++++
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~   33 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE   33 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence            456889999999987766643       46888888876

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=97.79  E-value=0.00013  Score=53.39  Aligned_cols=93  Identities=12%  Similarity=0.086  Sum_probs=55.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +.+.+||.|+++| |.|.. .|+..++..++.+.  .+.|.-|.+|+.      ...+..+.+ ++|++.-         
T Consensus        17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~------~~~~~~~L~-~~y~I~~---------   78 (116)
T cd03007          17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDY------GEKLNMELG-ERYKLDK---------   78 (116)
T ss_pred             cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccc------cchhhHHHH-HHhCCCc---------
Confidence            4568999999955 44444 47777777776442  266666766521      111224454 6666420         


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCc--EEEecCCC-CChHHHHHHHHH
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK--VIERYPPT-TSPFQIEKDIQK  241 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~--i~~~~~g~-~~~~~l~~~l~~  241 (245)
                                             +..|+++|+. +|.  ....|.|. .+.+.|.+.|.+
T Consensus        79 -----------------------~gyPTl~lF~-~g~~~~~~~Y~G~~r~~~~lv~~v~~  114 (116)
T cd03007          79 -----------------------ESYPVIYLFH-GGDFENPVPYSGADVTVDALQRFLKG  114 (116)
T ss_pred             -----------------------CCCCEEEEEe-CCCcCCCccCCCCcccHHHHHHHHHh
Confidence                                   0237777774 453  22467785 788888888765

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=97.76  E-value=0.00021  Score=57.87  Aligned_cols=116  Identities=20%  Similarity=0.355  Sum_probs=74.8

Q ss_pred             CcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCc---EEEEEecCCCCCCCCCChHH
Q 026011           86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF---EILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~---~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      ...|.+++-+    .....+.+|+++||.+--.+|..|..++..|..|..++.+.|+   .++.|+--       +....
T Consensus         8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-------~~~s~   76 (238)
T PF04592_consen    8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-------GEHSR   76 (238)
T ss_pred             CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-------Ccchh
Confidence            4566666544    3345677899999999999999999999999999999988874   45555421       12222


Q ss_pred             HH-HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          163 IK-EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       163 ~~-~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                      .. ..+.++....+|++.. +...   ..+|..+.-..           --+||+|+-|++.+...
T Consensus        77 ~~~~~l~~r~~~~ipVyqq-~~~q---~dvW~~L~G~k-----------dD~~iyDRCGrL~~~i~  127 (238)
T PF04592_consen   77 LKYWELKRRVSEHIPVYQQ-DENQ---PDVWELLNGSK-----------DDFLIYDRCGRLTYHIP  127 (238)
T ss_pred             HHHHHHHHhCCCCCceecC-Cccc---cCHHHHhCCCc-----------CcEEEEeccCcEEEEec
Confidence            22 2222343445888742 1122   33444433211           23799999999987764

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.74  E-value=0.00026  Score=51.93  Aligned_cols=93  Identities=10%  Similarity=0.050  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEEecC----CCCCChHHH--HHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCccee
Q 026011          105 KFKGKVLLIVNVAS----RCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF  178 (245)
Q Consensus       105 ~~~gk~vll~F~~t----~C~~C~~~~--~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~  178 (245)
                      .-++|.++|+++.+    ||..|+..+  +++.+..+    .++-+++.+++        +.+ ..+.+ ..++      
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~--------~~e-g~~la-~~l~------   73 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVA--------KPE-GYRVS-QALR------   73 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecC--------ChH-HHHHH-HHhC------
Confidence            34689999999988    777886554  44444332    34766776654        232 23333 2222      


Q ss_pred             eccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEE---CCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          179 DKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV---DKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       179 ~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~li---D~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                                                  +...|.+.+|   +.+.+++.+..|..+++++...|+.++++
T Consensus        74 ----------------------------~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~  115 (116)
T cd02991          74 ----------------------------ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA  115 (116)
T ss_pred             ----------------------------CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence                                        2223888888   77778899999999999999999988753

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.58  E-value=0.00023  Score=59.69  Aligned_cols=89  Identities=13%  Similarity=0.233  Sum_probs=60.2

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC---CcEEE-EEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ---GFEIL-AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~---g~~vv-~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      ...|+|.|+|+||+..+...|.+.+-.+++++.   |-.|. .|.+|        .    ..++.++|.+          
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd--------~----e~~ia~ky~I----------   70 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD--------K----EDDIADKYHI----------   70 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc--------h----hhHHhhhhcc----------
Confidence            468999999999999999999999877666543   22233 34433        1    2233255443          


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEE-ecCCCCChHHHHHHHHHHh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE-RYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~-~~~g~~~~~~l~~~l~~ll  243 (245)
                                              .-+|++=|+ .+|.+.. .|.|..+.+.|.+.|++.+
T Consensus        71 ------------------------~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~  106 (375)
T KOG0912|consen   71 ------------------------NKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQL  106 (375)
T ss_pred             ------------------------ccCceeeee-eccchhhhhhccchhHHHHHHHHHHHh
Confidence                                    222665555 7888776 5788888888888887765

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0015  Score=49.69  Aligned_cols=105  Identities=23%  Similarity=0.221  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      ...+||+.++.|-...|+.|...-..+   .++++-+.+. +.++.+....       +.. + .|.            +
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------skp-v-~f~------------~   95 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------SKP-V-LFK------------V   95 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------Ccc-e-Eee------------c
Confidence            344789999999999999998665554   3455555554 6666665430       110 0 000            0


Q ss_pred             cCC-CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          181 VDV-NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       181 ~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      -+. ......++.+          +..++++|+.++.|++|+-+....|..+++++...++
T Consensus        96 g~kee~~s~~ELa~----------kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143          96 GDKEEKMSTEELAQ----------KFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             CceeeeecHHHHHH----------HhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            000 0000112222          1127778999999999999999999999998776654

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=97.44  E-value=0.0013  Score=54.83  Aligned_cols=135  Identities=13%  Similarity=0.136  Sum_probs=74.2

Q ss_pred             ccCcccCeEEEcCCCCeeecCC-CCCCEEEEEEe-cCCCCCChHHH--HHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSK-FKGKVLLIVNV-ASRCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~-~~gk~vll~F~-~t~C~~C~~~~--~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .....|++..++++|+.+++.+ ++||+.||..+ ..|-..|....  |.+.++... ....+++|-|++-         
T Consensus        97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~-~~~~~q~v~In~~---------  166 (252)
T PF05176_consen   97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQE-PYGRVQIVEINLI---------  166 (252)
T ss_pred             hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhC-CCCceEEEEEecc---------
Confidence            3446899999999999988866 69997776555 34433333222  222222221 1115899999874         


Q ss_pred             hHHHHHHHHHh------------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          160 NPEIKEFACTR------------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       160 ~~~~~~~~~~~------------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                      ..-++.++..-            .+..|-+..+ +.-...+.+..+..           -..+..+||||.+|+|++.-.
T Consensus       167 e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~-~~~~~~iRe~Lgi~-----------N~~~GYvyLVD~~grIRWags  234 (252)
T PF05176_consen  167 ENWLKSWLVKLFMGSLRKSIPEERHDRYFIVYR-GQLSDDIREALGIN-----------NSYVGYVYLVDPNGRIRWAGS  234 (252)
T ss_pred             hHHHHHHHHHHHhhhhhccCCHHHCceEEEEeC-CcccHHHHHHhCCC-----------CCCcCeEEEECCCCeEEeCcc
Confidence            23334444211            0111211110 00000111111111           112256899999999999999


Q ss_pred             CCCChHHHHHHHH
Q 026011          228 PTTSPFQIEKDIQ  240 (245)
Q Consensus       228 g~~~~~~l~~~l~  240 (245)
                      |..++++++...+
T Consensus       235 G~At~~E~~~L~k  247 (252)
T PF05176_consen  235 GPATPEELESLWK  247 (252)
T ss_pred             CCCCHHHHHHHHH
Confidence            9999988766544

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.42  E-value=0.00087  Score=44.75  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..||++||++|+...+.|.++       |+.+-.|++|
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~   33 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE   33 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence            5679999999999877766443       4555566665

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=97.35  E-value=0.0016  Score=47.43  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=57.0

Q ss_pred             HHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhh-------------
Q 026011          130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK-------------  196 (245)
Q Consensus       130 l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~-------------  196 (245)
                      |.+...++++.|+++|.|.+.        +.+.+++|+ +..+.++|++.|.+      ..+|+.+.             
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~D~~------~~lY~~lg~~~~~~~~~~~~~   66 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYVDPE------RKLYKALGLKRGLKWSLLPPA   66 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEEeCc------HHHHHHhCCccccccCCCchH
Confidence            566778888899999999976        776799999 77888999886643      22222111             


Q ss_pred             -------------cc-cCCCC-CCccccceeEEEECCCCcEEEecC
Q 026011          197 -------------SS-AGGFL-GDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       197 -------------~~-~~~~~-~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                                   .. ..+.. ...+......||+|++|+|++.|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr  112 (115)
T PF13911_consen   67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR  112 (115)
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence                         10 01111 233455578999999999998775

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.35  E-value=0.0019  Score=48.23  Aligned_cols=89  Identities=11%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             CEEEEEEec--CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          109 KVLLIVNVA--SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       109 k~vll~F~~--t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ...+|+|-+  -.+|-+.-..-.|.++.++|.+..+.+..|++|+        .   .+.+ .+|+              
T Consensus        35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~---~~LA-~~fg--------------   88 (132)
T PRK11509         35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------S---EAIG-DRFG--------------   88 (132)
T ss_pred             CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------C---HHHH-HHcC--------------
Confidence            355565553  3566677677788888888864448899998772        2   2233 4444              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ +||+++.+..|..+.+++.+.|+++|.
T Consensus        89 --------------------V~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~  125 (132)
T PRK11509         89 --------------------VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_pred             --------------------CccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence                                4445987777 999999999999999999999999875

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.28  E-value=0.00089  Score=50.87  Aligned_cols=41  Identities=17%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      .++++|+.|+..+||+|....+.+.++..++++  ++++.+.+
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence            478899999999999999999999998877754  55555443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.20  E-value=0.0018  Score=53.41  Aligned_cols=40  Identities=13%  Similarity=0.180  Sum_probs=31.2

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      -.||.+|+.|.-..||+|+...+++.++.+    .|++|..+.+
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~  144 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAF  144 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEec
Confidence            367899999999999999999888876543    4677766544

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.17  E-value=0.001  Score=51.48  Aligned_cols=30  Identities=13%  Similarity=0.055  Sum_probs=19.5

Q ss_pred             CeeecCCCCCCEEEEEEecCCCCCChHHHH
Q 026011           99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYS  128 (245)
Q Consensus        99 ~~v~l~~~~gk~vll~F~~t~C~~C~~~~~  128 (245)
                      +.+....-++|+++|+++++||..|..+..
T Consensus        28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~   57 (163)
T PF03190_consen   28 EALEKAKKENKPIFLSIGYSWCHWCHVMER   57 (163)
T ss_dssp             HHHHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence            344445557899999999999999997653

; PDB: 3IRA_A.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.15  E-value=0.0052  Score=51.36  Aligned_cols=124  Identities=11%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHh--------cCCCccee
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--------FKAEFPIF  178 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~--------~~~~~p~~  178 (245)
                      .+|.+|+.|.-..||+|+....++.++.+. .  +++|..+.+--   ..+++.......++.+        +...+.. 
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~---l~~~S~~~a~ailca~d~~~a~~~~~~~~~~-  188 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGI---IKPDSPGKAAAILAAKDPAKALQEYEASGGK-  188 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccc---cCcchHHHHHHHHhccCHHHHHHHHHHhhhc-
Confidence            567889999999999999999888776553 1  26555443211   1123333222222111        1111100 


Q ss_pred             eccCCCCCCcchhhhhhhcc--cCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          179 DKVDVNGPNTAPVYQFLKSS--AGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       179 ~d~d~~~~~~~~~~~~~~~~--~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      .+..............+...  .+..+  .|+++|++|+.|.+|++ ....|..++++|.+.|.
T Consensus       189 ~~~~~~~~~~~~~~~~i~~n~~l~~~l--Gv~GTPaiv~~d~~G~~-~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        189 LGLKPPASIPAAVRKQLADNQKLMDDL--GANATPAIYYMDKDGTL-QQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHhC
Confidence            00000000000111111100  01111  27888999999999975 33457778888887764

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=97.15  E-value=0.00089  Score=56.17  Aligned_cols=36  Identities=14%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEE
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI  144 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~v  144 (245)
                      ...+|+||++||.+|+..-|...++--++++-|+-|
T Consensus        44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~Pi   79 (468)
T KOG4277|consen   44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPI   79 (468)
T ss_pred             CeEEEEeechhhhhcccccchhHHhCcchhhcCCce
Confidence            488999999999999999999988877777765443

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.08  E-value=0.0014  Score=44.10  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=19.2

Q ss_pred             ecCCCCCChHHHHHHHHHHHHhh
Q 026011          116 VASRCGLTPSNYSELSHLYEKYK  138 (245)
Q Consensus       116 ~~t~C~~C~~~~~~l~~l~~~~~  138 (245)
                      +..+|+.|......+++..++++
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~   28 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG   28 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC
Confidence            57779999988888888888773

...

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.04  E-value=0.00061  Score=61.79  Aligned_cols=60  Identities=18%  Similarity=0.378  Sum_probs=43.1

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC-ccee
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIF  178 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~-~p~~  178 (245)
                      +.-+|.|+++||+.|+...|.++++.+...+-.  +.|-+|.+-         .+.-... ++++++. ||.+
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~l-CRef~V~~~Ptl  120 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKL-CREFSVSGYPTL  120 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhh-HhhcCCCCCcee
Confidence            467899999999999999999999998887642  566677664         1222333 4777764 5554

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.00  E-value=0.0018  Score=44.01  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      |+.|+.+|||+|....+.|.++.  ... .++++-|+.+       ....++.+++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l   46 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYL   46 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHH
Confidence            46788999999999998888865  222 2677777654       1344555555

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=97.00  E-value=0.0097  Score=43.74  Aligned_cols=106  Identities=21%  Similarity=0.318  Sum_probs=63.9

Q ss_pred             cCCCCCCE-EEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC-CCChHHHHHHHHHhcCCCcceee
Q 026011          103 LSKFKGKV-LLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE-PGSNPEIKEFACTRFKAEFPIFD  179 (245)
Q Consensus       103 l~~~~gk~-vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~  179 (245)
                      |+++++|- +||.|- ...-+.-..++..|.+-...+.++.+.++.|.-+...... .-+.....+.. ++|+++     
T Consensus         3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~-----   76 (118)
T PF13778_consen    3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIP-----   76 (118)
T ss_pred             hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCC-----
Confidence            55666652 333343 2333345667788888778888888888888543211110 01122222222 333321     


Q ss_pred             ccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          180 KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       180 d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                         .+         ..+++||+|||.+..++....+.++|.+.|+..
T Consensus        77 -------------------~~---------~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M  111 (118)
T PF13778_consen   77 -------------------PG---------GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM  111 (118)
T ss_pred             -------------------CC---------ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence                               00         157899999999999998888999998888753

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.005  Score=54.67  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=34.6

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEec
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPC  149 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~  149 (245)
                      ...++.|++.||++|+...+.+.++...++. .++++..+..
T Consensus       163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~  204 (383)
T KOG0191|consen  163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA  204 (383)
T ss_pred             cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence            4788899999999999999999999998874 4577777754

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.67  E-value=0.0084  Score=46.83  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=34.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      .+++.|+.|+...||+|....+.+.++.+++.++ +.+..+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcCC
Confidence            6789999999999999999999999999988543 66655543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=96.64  E-value=0.0053  Score=45.09  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=32.9

Q ss_pred             CCCCEEEEEEec-------CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          106 FKGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       106 ~~gk~vll~F~~-------t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      -.|++++|.|.+       +|||.|....|.+++..+...+ +..+|.|.+-
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG   67 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG   67 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence            356788888884       4999999999999998887554 5888888764

; PDB: 1V9W_A 1WOU_A.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=96.45  E-value=0.0073  Score=50.79  Aligned_cols=42  Identities=14%  Similarity=0.082  Sum_probs=34.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.+|||+||-..++.|...-..|..|..+|..  ++++.|...
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~  186 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS  186 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence            345899999999999999999999999999987  899998754

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.046  Score=44.00  Aligned_cols=84  Identities=14%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             cCeEEEcCCCCeeecCC-CCCCE--EEEEEe-----cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           89 YDFTVKDIDGKDVPLSK-FKGKV--LLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~-~~gk~--vll~F~-----~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      -+..+...+| +.+|.| |.||-  +|..|.     ...|+.|...+.++.-...-+...++.++.||--        ..
T Consensus        53 K~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl  123 (247)
T COG4312          53 KDYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PL  123 (247)
T ss_pred             ceeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cH
Confidence            3566666777 568877 47773  333332     3469999999888877777777778999999854        67


Q ss_pred             HHHHHHHHHhcCCCcceeeccC
Q 026011          161 PEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      +++..|- ++.|-.||+++..+
T Consensus       124 ~~l~~~k-~rmGW~f~w~Ss~~  144 (247)
T COG4312         124 EELVAYK-RRMGWQFPWVSSTD  144 (247)
T ss_pred             HHHHHHH-HhcCCcceeEeccC
Confidence            8888887 78899999986544

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.30  E-value=0.0078  Score=48.25  Aligned_cols=32  Identities=22%  Similarity=0.220  Sum_probs=25.8

Q ss_pred             eecCCCCCCEEEEEEecCCCCCChHHHHHHHH
Q 026011          101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSH  132 (245)
Q Consensus       101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~  132 (245)
                      +.+..-.+++.|+.|....||+|+...+.+.+
T Consensus        70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence            44433357899999999999999999888876

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.18  E-value=0.025  Score=52.75  Aligned_cols=40  Identities=15%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      ++..+-.|..++||.|+.....++++..+..  +++.-.|..
T Consensus       476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~  515 (555)
T TIGR03143       476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDV  515 (555)
T ss_pred             CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEEC
Confidence            3444556789999999998899988888765  366655543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.01  E-value=0.038  Score=39.54  Aligned_cols=77  Identities=19%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ..++++|+=..|.||.......++++.++...+. +.+..|.+-        ..-.+.+.+.+++++..           
T Consensus        18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~H-----------   77 (105)
T PF11009_consen   18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVKH-----------   77 (105)
T ss_dssp             --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--------------
T ss_pred             ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCCc-----------
Confidence            4679888888999999999999999999888765 777777664        34455555546666421           


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                                            ..|-.+|| +||++++.-
T Consensus        78 ----------------------eSPQ~ili-~~g~~v~~a   94 (105)
T PF11009_consen   78 ----------------------ESPQVILI-KNGKVVWHA   94 (105)
T ss_dssp             -----------------------SSEEEEE-ETTEEEEEE
T ss_pred             ----------------------CCCcEEEE-ECCEEEEEC
Confidence                                  12878888 899998754

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG4498 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.086  Score=41.47  Aligned_cols=55  Identities=20%  Similarity=0.358  Sum_probs=44.9

Q ss_pred             EcCCCCeeecCCC-CCC-EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011           94 KDIDGKDVPLSKF-KGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP  148 (245)
Q Consensus        94 ~~~~G~~v~l~~~-~gk-~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs  148 (245)
                      .+..|+.+.+.++ +.+ .||...--..|-.|+.+...|.++..-+++.|+.+|+|-
T Consensus        35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg   91 (197)
T KOG4498|consen   35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG   91 (197)
T ss_pred             hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            5678899999886 444 555555589999999999999999888888899999985

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=95.91  E-value=0.028  Score=38.47  Aligned_cols=37  Identities=11%  Similarity=0.116  Sum_probs=30.2

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |..|..+|||.|......|+++..++  .|+.+.-|+++
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~   39 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH   39 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence            56688999999999999999998765  35777777765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.44  E-value=0.09  Score=48.61  Aligned_cols=39  Identities=13%  Similarity=0.115  Sum_probs=30.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF  147 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V  147 (245)
                      .++.-+..|....||+|+.....++++..+.+  ++..-.|
T Consensus       115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i  153 (517)
T PRK15317        115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI  153 (517)
T ss_pred             CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence            44555778889999999999999988888655  3666666

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=95.35  E-value=0.04  Score=42.20  Aligned_cols=50  Identities=16%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHh--hhCCcEEEEEecC
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY--KTQGFEILAFPCN  150 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~--~~~g~~vv~Vs~D  150 (245)
                      .+.+-+-.++++|+.|+...||+|....+.+.++.+++  .++ +.++...+.
T Consensus         4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~-v~~~~~~~~   55 (162)
T PF13462_consen    4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGK-VKFVFRPVP   55 (162)
T ss_dssp             SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTT-EEEEEEESS
T ss_pred             CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCc-eEEEEEEcc
Confidence            34566667889999999999999999999999999998  443 888888764

...

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=94.95  E-value=0.12  Score=33.50  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=23.2

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+..||+.|......|.+       .|+.+..+.+|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~   33 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD   33 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence            456789999999976655543       45777777776

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=94.83  E-value=0.084  Score=33.41  Aligned_cols=32  Identities=13%  Similarity=0.208  Sum_probs=24.1

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|...|||.|......|       .+.|+.+-.+.++
T Consensus         1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~   32 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD   32 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred             cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence            4568899999999776666       3456777777776

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.80  E-value=0.077  Score=38.64  Aligned_cols=47  Identities=11%  Similarity=0.194  Sum_probs=35.9

Q ss_pred             cCCC-CCCEEEEEEec--------CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          103 LSKF-KGKVLLIVNVA--------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       103 l~~~-~gk~vll~F~~--------t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++++ +|+.+.+.|.+        +|||.|....|.+.+..+...+ ++.+|.|-+-
T Consensus        19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG   74 (128)
T KOG3425|consen   19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG   74 (128)
T ss_pred             HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence            3444 67777788873        5999999999999998886555 4888888654

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.025  Score=45.54  Aligned_cols=44  Identities=16%  Similarity=0.014  Sum_probs=38.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +.+..||.|++.|.+-|....|.+.++..+|...++.+=.|.+.
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG  186 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG  186 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence            34588999999999999999999999999999888887777554

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.68  E-value=0.22  Score=46.09  Aligned_cols=39  Identities=13%  Similarity=0.147  Sum_probs=30.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF  147 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V  147 (245)
                      .++.-+..|....||+|+.....++++..+.+  ++..-.|
T Consensus       116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i  154 (515)
T TIGR03140       116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI  154 (515)
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE
Confidence            45566778899999999998888988888765  3665555

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.55  E-value=0.1  Score=35.04  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=24.7

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|...|||.|......|.++..     .++++-|..+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~   35 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH   35 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence            456789999999988877776543     2566767655

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>KOG3414 consensus Component of the U4/U6

Probab=94.14  E-value=1.3  Score=32.71  Aligned_cols=56  Identities=13%  Similarity=0.099  Sum_probs=41.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF  175 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (245)
                      ..|.|+|-|.-.|-|.|..+-..|.++.+...+  +.+|.+.          +.+++..|. +-|++..
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylv----------dideV~~~~-~~~~l~~   77 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLV----------DIDEVPDFV-KMYELYD   77 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEE----------ecchhhhhh-hhhcccC
Confidence            457999999999999999999999999998876  4444442          233566666 5555543

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=94.10  E-value=0.17  Score=34.81  Aligned_cols=37  Identities=11%  Similarity=0.076  Sum_probs=26.2

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|..+|||+|......|.++..++.  ++.+.-+.++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~   38 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH   38 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence            456779999999988888877655432  3556566554

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=1.4  Score=36.37  Aligned_cols=49  Identities=22%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             EcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCc
Q 026011           94 KDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF  142 (245)
Q Consensus        94 ~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~  142 (245)
                      ...+++...+.+..++++++.|.-..||+|...++.+.+.+...++..+
T Consensus        70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~  118 (244)
T COG1651          70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRL  118 (244)
T ss_pred             ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCce
Confidence            3456666666666678999999999999999999999987777665433

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.83  E-value=0.18  Score=32.42  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=23.0

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|..+|||.|......|.+.       ++.+.-++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~   33 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDIL   33 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECC
Confidence            4567899999999877776543       3666666665

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.81  E-value=0.32  Score=31.98  Aligned_cols=32  Identities=9%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..|..++||.|......|++       .|+.+-.+.++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~   33 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD   33 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence            456788999999977766654       45777777766

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.67  E-value=0.55  Score=42.26  Aligned_cols=71  Identities=7%  Similarity=0.114  Sum_probs=54.0

Q ss_pred             cccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011           79 HATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus        79 ~~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .++...++.+-.+.+.-.+|+.+.|.+++|..-+|...++- .+|...+...+...+++.++|+-||-|..+
T Consensus       267 ~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~  337 (453)
T PLN03098        267 MSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG  337 (453)
T ss_pred             HHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence            44555667777777776678899999999974444344333 466778888889999999999999999876

>PRK10329 glutaredoxin-like protein; Provisional

Probab=93.60  E-value=0.26  Score=33.50  Aligned_cols=32  Identities=9%  Similarity=0.327  Sum_probs=23.7

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..|..+||+.|......|       .++|+.+-.|.+|
T Consensus         3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~   34 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVD   34 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECC
Confidence            4557789999999766655       3367887777776

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=93.31  E-value=0.49  Score=35.29  Aligned_cols=91  Identities=11%  Similarity=0.035  Sum_probs=59.7

Q ss_pred             CEEEEEEecC--CCC-CCh-HHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          109 KVLLIVNVAS--RCG-LTP-SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       109 k~vll~F~~t--~C~-~C~-~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +..+|.|.-.  .|. -+. .....|.++.++|+++++.++.+..+        ....   +. +.+++.-        .
T Consensus        21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~--------~~~~---~~-~~fgl~~--------~   80 (130)
T cd02983          21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAG--------AQLD---LE-EALNIGG--------F   80 (130)
T ss_pred             CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCc--------ccHH---HH-HHcCCCc--------c
Confidence            4666666532  233 233 44688889999999887888888765        2112   33 4444310        0


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe-cCCCCChHHHHHHHHHHhh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER-YPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~-~~g~~~~~~l~~~l~~ll~  244 (245)
                                              ..|.+++++.++. .|. +.|..+.+.+.+.++.+++
T Consensus        81 ------------------------~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          81 ------------------------GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             ------------------------CCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence                                    1188899988765 555 6788899999999998864

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.22  E-value=0.096  Score=42.41  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=34.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +++.++++||+.||..|...-..+.++.+.+  .+++++.+..|
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~   57 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE   57 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence            7889999999999999998777777777777  34888888665

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=93.22  E-value=0.069  Score=43.48  Aligned_cols=41  Identities=15%  Similarity=0.155  Sum_probs=31.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP  148 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs  148 (245)
                      .|. .||.|+++|||-|....+++..+..--.+.|+.|--|.
T Consensus        39 ~ge-wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD   79 (248)
T KOG0913|consen   39 TGE-WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD   79 (248)
T ss_pred             chH-HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence            454 46789999999999999999887776566666655543

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.13  E-value=0.31  Score=32.58  Aligned_cols=31  Identities=13%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ..|+.+|||.|......|++       .|+.+--++++
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~   32 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD   32 (79)
T ss_pred             EEEecCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence            45789999999987777753       34555555555

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=93.12  E-value=0.33  Score=32.60  Aligned_cols=34  Identities=15%  Similarity=0.356  Sum_probs=24.5

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .-|+.|..+||+.|......|.       +.|+.+..+.++
T Consensus         8 ~~V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~   41 (79)
T TIGR02190         8 ESVVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLG   41 (79)
T ss_pred             CCEEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECC
Confidence            3355688999999998777764       245666667766

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=93.01  E-value=0.18  Score=40.67  Aligned_cols=43  Identities=9%  Similarity=0.108  Sum_probs=33.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|++.|+.|+.-.||+|....+.+   .++.+.+.+ ++.++.+.++
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~   81 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHVE   81 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEeccc
Confidence            578889999999999999887765   677777765 4777666553

>PHA03050 glutaredoxin; Provisional

Probab=92.59  E-value=0.26  Score=35.57  Aligned_cols=22  Identities=14%  Similarity=0.268  Sum_probs=17.0

Q ss_pred             EEEEecCCCCCChHHHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSHL  133 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l  133 (245)
                      |+.|..+|||+|......|.++
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~   36 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKF   36 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHc
Confidence            4558899999999777766554

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=92.34  E-value=0.65  Score=31.45  Aligned_cols=43  Identities=12%  Similarity=0.234  Sum_probs=28.1

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      +..|.-++||+|......|.       ++|+...-|.++.      +..++.++++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~   45 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMV   45 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHH
Confidence            44567789999997766665       4566666665551      2444666666

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=92.24  E-value=0.82  Score=30.01  Aligned_cols=31  Identities=10%  Similarity=0.109  Sum_probs=22.7

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ..|..++|+.|......|++       .|+.+-.+.++
T Consensus         4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~   34 (73)
T cd03027           4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID   34 (73)
T ss_pred             EEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence            45778999999987766654       55777677665

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=91.84  E-value=0.51  Score=31.00  Aligned_cols=31  Identities=13%  Similarity=0.181  Sum_probs=22.9

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ..|...+||.|......|.+       +|+.+-.+.++
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~   32 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID   32 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence            45778999999988777753       46777667666

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=91.73  E-value=0.61  Score=30.54  Aligned_cols=32  Identities=13%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|..+|||.|......|.+       .|+.+.-+.++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~   34 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG   34 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence            455778999999988666653       45666666665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=91.66  E-value=1.3  Score=32.04  Aligned_cols=29  Identities=28%  Similarity=0.338  Sum_probs=23.4

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHh
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKY  137 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~  137 (245)
                      |.+||-|.-+.|+.|...-..|.++.++|
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY   30 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY   30 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence            56888999999999998777776666554

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=91.54  E-value=0.92  Score=35.24  Aligned_cols=89  Identities=19%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             CCCE-EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~-vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+++ +++.|..............|+++.++++++ +.++.+..+           ...+.+ +.+++.-          
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~-----------~~~~~~-~~~~i~~----------  149 (184)
T PF13848_consen   93 SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD-----------DFPRLL-KYFGIDE----------  149 (184)
T ss_dssp             TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT-----------TTHHHH-HHTTTTT----------
T ss_pred             CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH-----------HhHHHH-HHcCCCC----------
Confidence            3445 666665444555667777788888888765 777777654           122333 3433210          


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~  240 (245)
                                            ...|.++++|.+ ++..+...+..+.+.+.+.++
T Consensus       150 ----------------------~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~  183 (184)
T PF13848_consen  150 ----------------------DDLPALVIFDSNKGKYYYLPEGEITPESIEKFLN  183 (184)
T ss_dssp             ----------------------SSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred             ----------------------ccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence                                  112999999954 454344567778888888775

...

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=1.6  Score=41.18  Aligned_cols=23  Identities=22%  Similarity=0.099  Sum_probs=20.0

Q ss_pred             CCCCCEEEEEEecCCCCCChHHH
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNY  127 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~  127 (245)
                      .-++||++|...++||..|..+.
T Consensus        40 ~~edkPIflSIGys~CHWChVM~   62 (667)
T COG1331          40 KEEDKPILLSIGYSTCHWCHVMA   62 (667)
T ss_pred             HHhCCCEEEEeccccccchHHHh
Confidence            34789999999999999999765

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=90.46  E-value=0.95  Score=35.99  Aligned_cols=41  Identities=7%  Similarity=-0.087  Sum_probs=34.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      +..-||++||-..-..|+.+-.+|..+.+++-+  .++|-|+.
T Consensus        83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvna  123 (211)
T KOG1672|consen   83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNA  123 (211)
T ss_pred             cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEec
Confidence            455789999988888999999999999998865  78999864

>PRK10824 glutaredoxin-4; Provisional

Probab=90.30  E-value=0.81  Score=33.41  Aligned_cols=27  Identities=19%  Similarity=0.346  Sum_probs=18.1

Q ss_pred             CCCEEEEEEec----CCCCCChHHHHHHHHH
Q 026011          107 KGKVLLIVNVA----SRCGLTPSNYSELSHL  133 (245)
Q Consensus       107 ~gk~vll~F~~----t~C~~C~~~~~~l~~l  133 (245)
                      +.++|+|+--.    +|||+|......|+++
T Consensus        13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~   43 (115)
T PRK10824         13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC   43 (115)
T ss_pred             hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence            34566664443    5999999877766554

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=90.18  E-value=0.85  Score=32.23  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=21.6

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+| +.|..+|||+|......|.+       .|+..-.+.+|
T Consensus         8 ~~V-vvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid   41 (99)
T TIGR02189         8 KAV-VIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEID   41 (99)
T ss_pred             CCE-EEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcC
Confidence            344 45788999999977665543       34544455555

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=89.96  E-value=1.4  Score=30.96  Aligned_cols=37  Identities=14%  Similarity=0.192  Sum_probs=23.4

Q ss_pred             CCCEEEEEEe----cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNV----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~----~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +.+.|+|+-.    .+|||+|......|.+       .|+.+..+.++
T Consensus        10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~   50 (97)
T TIGR00365        10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL   50 (97)
T ss_pred             ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence            3456666544    3899999977666654       34555566654

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=89.84  E-value=1.4  Score=30.34  Aligned_cols=37  Identities=22%  Similarity=0.393  Sum_probs=22.9

Q ss_pred             CCCEEEEEEec----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++++|+|+--.    +|||+|......|.+.       |+.+..+.++
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~   46 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL   46 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence            45666664332    6999999776666543       4555555554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=89.38  E-value=5  Score=28.92  Aligned_cols=31  Identities=6%  Similarity=-0.103  Sum_probs=22.3

Q ss_pred             eeEEEECCCCcEEEecCCCC-ChHHHHHHHHHH
Q 026011          211 FEKFLVDKNGKVIERYPPTT-SPFQIEKDIQKL  242 (245)
Q Consensus       211 P~~~liD~~G~i~~~~~g~~-~~~~l~~~l~~l  242 (245)
                      |.+.|++.++ -.+...+.. +.+.|.+.++..
T Consensus        79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            8888998776 334455666 778888888764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=89.16  E-value=0.52  Score=32.02  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=29.3

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |..|+...||.|....+.+.++.+...+ ++++..+.+.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP   38 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence            4578899999999999999998755444 4777766654

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=89.14  E-value=2.5  Score=39.53  Aligned_cols=93  Identities=15%  Similarity=0.081  Sum_probs=53.7

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .++++.+.|+.|+...|..|.....-|+++. ++.++ +++..+..+        +.   .+.+ ++|+           
T Consensus       362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~~~--------~~---~~~~-~~~~-----------  416 (555)
T TIGR03143       362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAVNRG--------EE---PESE-TLPK-----------  416 (555)
T ss_pred             HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEeccc--------cc---hhhH-hhcC-----------
Confidence            3456677788888888888986666666655 34444 555444322        11   1112 3333           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                             +...|++.|+|.+|+- --+|.|...-.++...|..+++
T Consensus       417 -----------------------v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~  455 (555)
T TIGR03143       417 -----------------------ITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYN  455 (555)
T ss_pred             -----------------------CCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHH
Confidence                                   2223888888766631 1255565566677777776654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10638 glutaredoxin 3; Provisional

Probab=87.90  E-value=2.4  Score=28.59  Aligned_cols=32  Identities=13%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..|...|||+|......|++       +|+...-+.+|
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~   35 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID   35 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence            345668999999977766654       35665566665

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=85.72  E-value=1.6  Score=31.75  Aligned_cols=49  Identities=12%  Similarity=0.159  Sum_probs=34.0

Q ss_pred             EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011          114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE  174 (245)
Q Consensus       114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      .|+..+|+.|+.....|.+       +|+++..+++.    .++.+.+++.+++ +..+..
T Consensus         3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~   51 (117)
T TIGR01617         3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDG   51 (117)
T ss_pred             EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCC
Confidence            4678999999987766654       45666666654    2345778888888 665643

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=84.79  E-value=2.3  Score=30.40  Aligned_cols=48  Identities=6%  Similarity=0.097  Sum_probs=32.2

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ..|+.++|+.|+....-|.+       +|+.+-.+.+.    .++-+.+++.+++ ++.+
T Consensus         2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~----~~p~s~~eL~~~l-~~~g   49 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYR----KDGLDAATLERWL-AKVG   49 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCCHHHHHHHH-HHhC
Confidence            45779999999987766643       34544444433    2355889999998 5555

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=84.78  E-value=14  Score=31.36  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             CcccCeEEEcCCCCeeecCCCC--CCEEEEEEecCCCCCChHHH-HHHHHHHHHhh--hCCcEEEEEecC
Q 026011           86 KSLYDFTVKDIDGKDVPLSKFK--GKVLLIVNVASRCGLTPSNY-SELSHLYEKYK--TQGFEILAFPCN  150 (245)
Q Consensus        86 ~~~pdf~l~~~~G~~v~l~~~~--gk~vll~F~~t~C~~C~~~~-~~l~~l~~~~~--~~g~~vv~Vs~D  150 (245)
                      ..+|-|.+.|.+|..+-...-.  ++.+.++|+      |+... ..|+++.....  ..+++|+.|++|
T Consensus        73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~  136 (274)
T PF04278_consen   73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG  136 (274)
T ss_dssp             TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred             cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence            4689999999999988776654  566666554      44444 33455555433  356999999876

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum

Probab=84.08  E-value=18  Score=28.13  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=33.9

Q ss_pred             cCcccCeEEEc-CCCCeeecCCC---CCCEEEEEEecCCCCCChHHHHHHHHHHHHh
Q 026011           85 EKSLYDFTVKD-IDGKDVPLSKF---KGKVLLIVNVASRCGLTPSNYSELSHLYEKY  137 (245)
Q Consensus        85 g~~~pdf~l~~-~~G~~v~l~~~---~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~  137 (245)
                      |..+|++.+.. .||+++.|.+.   .|++-|+.|-..--+  ......|.++.+.+
T Consensus         1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~--~~~~~~l~~~~~~L   55 (167)
T cd02979           1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAP--AQQKSRLTQLCDAL   55 (167)
T ss_pred             CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCc--hhHHHHHHHHHHHH
Confidence            56788888888 68999998764   689988888754322  33334444444443

PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=84.02  E-value=2.4  Score=30.59  Aligned_cols=48  Identities=19%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011          114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA  173 (245)
Q Consensus       114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      .|..++|+.|+....-|.+       +|+.+..+.+.    .++.+.+++.++. .+.+.
T Consensus         3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~   50 (111)
T cd03036           3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL   50 (111)
T ss_pred             EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence            4678999999977766544       45655555544    2245778888888 55454

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=83.96  E-value=1.2  Score=35.56  Aligned_cols=40  Identities=15%  Similarity=0.185  Sum_probs=36.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP  148 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs  148 (245)
                      +|-+|+|+.|...-|.|......|+.+.-+|++  +++|-|.
T Consensus       110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~  149 (240)
T KOG3170|consen  110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP  149 (240)
T ss_pred             CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence            477999999999999999999999999999987  7888874

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=83.67  E-value=12  Score=31.50  Aligned_cols=132  Identities=16%  Similarity=0.153  Sum_probs=66.5

Q ss_pred             cCcccCeEEEcCCCCeeecCCCCC-CEEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChH
Q 026011           85 EKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        85 g~~~pdf~l~~~~G~~v~l~~~~g-k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      =+.+|-|++.|.+|+.+-.+.-.| +.+-+++. .    -...-..|.++.++-.+  .+++|+.|+.|           
T Consensus        79 L~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-~----qedA~afL~~lk~~~p~l~~~~kV~pvsL~-----------  142 (270)
T TIGR00995        79 LAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCF-R----QEDAEAFLAQLRKRKPEVGSQAKVVPITLD-----------  142 (270)
T ss_pred             hcCCceEEEEcCCCCeEEEECCCCCceEEEEEC-C----HHHHHHHHHHHHhhCccccCCceEEEEEHH-----------
Confidence            346899999999999887765545 44444222 1    11123344555444332  35899999887           


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHH
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~  240 (245)
                      ++.+..  ..++.|.++-  +  ...+....+.+.....+..|-.+-.. ..+.|.++++- +-.|-   +.+++...|+
T Consensus       143 ~vYkl~--~e~l~F~fiP--~--~~qV~~A~~ll~~~~~~~~GVPlF~~-~~Lti~~~n~~~iP~FF---~Kedlq~~L~  212 (270)
T TIGR00995       143 QVYKLK--VEGIGFRFLP--D--PAQIKNALELPAANSEYFDGVPVFQS-GLLVVQKKNERYCPVYF---SKEDIEQELS  212 (270)
T ss_pred             HHHHHh--hcCccEEEeC--C--HHHHHHHHHHHhcCccCCCCccEEee-cceEEEeCCeEEEeeEe---eHHHHHHHHH
Confidence            233333  2346666662  2  12233333434211222222222211 23455454442 22222   6777777777


Q ss_pred             HH
Q 026011          241 KL  242 (245)
Q Consensus       241 ~l  242 (245)
                      ++
T Consensus       213 ~~  214 (270)
T TIGR00995       213 KF  214 (270)
T ss_pred             HH
Confidence            65

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=83.65  E-value=2.5  Score=32.26  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=26.9

Q ss_pred             eeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          211 FEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       211 P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      -.++++|++|+|.+...|.++..++.+.|..+
T Consensus       148 SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll  179 (184)
T COG3054         148 SAVVVLDKDGRVKFVKEGALTQAEVQQVIDLL  179 (184)
T ss_pred             ceEEEEcCCCcEEEEecCCccHHHHHHHHHHH
Confidence            56899999999999999999888877766543

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=83.43  E-value=3.4  Score=29.89  Aligned_cols=50  Identities=12%  Similarity=0.101  Sum_probs=33.8

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE  174 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      ..|+..+|+.|+.....|.+       +|+.+-.+.+.    .++.+.+++.+++ +..+..
T Consensus         3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~   52 (115)
T cd03032           3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENG   52 (115)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence            35668999999987666644       45666666654    2345788999998 555443

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=83.39  E-value=2.9  Score=29.63  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ..|..++|+.|+.....|++       +|+.+-.+.+.    ..+.+.+++.++. .+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~   49 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG   49 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence            45778999999977665544       45554444443    2245778888887 5544

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=83.18  E-value=2.6  Score=31.46  Aligned_cols=49  Identities=12%  Similarity=0.062  Sum_probs=32.2

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA  173 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      ..|...+|+.|+....-|.       ++|+.+-.+.+.    .++.+.+++.+++ +..+.
T Consensus         3 ~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~   51 (131)
T PRK01655          3 TLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIF----SSPLTIDEIKQIL-RMTED   51 (131)
T ss_pred             EEEeCCCChHHHHHHHHHH-------HcCCCcEEeecc----CChhhHHHHHHHH-HHhcC
Confidence            4566899999998765553       345665555543    2345778888888 55443

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=83.14  E-value=8.7  Score=34.32  Aligned_cols=37  Identities=14%  Similarity=0.103  Sum_probs=32.7

Q ss_pred             cccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       207 i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      +..+|..|+|+..|+-+.+..|....++|...|++++
T Consensus        75 ~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   75 YVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW  111 (506)
T ss_pred             cccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence            4445999999999999999999999999999988864

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=82.94  E-value=1.6  Score=29.49  Aligned_cols=53  Identities=17%  Similarity=0.350  Sum_probs=36.5

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD  179 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  179 (245)
                      |+.|....|+.|......|.++..+   .++++-.|.++        +.++   +. ++|+...|++.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~--------~d~~---l~-~~Y~~~IPVl~   54 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID--------EDPE---LF-EKYGYRIPVLH   54 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT--------TTHH---HH-HHSCTSTSEEE
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC--------CCHH---HH-HHhcCCCCEEE
Confidence            5667789999999877777765443   34888888887        3333   44 68887777763

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=80.52  E-value=17  Score=26.15  Aligned_cols=34  Identities=6%  Similarity=-0.092  Sum_probs=24.0

Q ss_pred             eeEEEECCCCcEEEe-cCCCCChHHHHHHHHHHhh
Q 026011          211 FEKFLVDKNGKVIER-YPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       211 P~~~liD~~G~i~~~-~~g~~~~~~l~~~l~~ll~  244 (245)
                      |.+.+++-++.-.+. ..+..+++.|.+.++..++
T Consensus        75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            877888776533344 4566788899999988764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2p5q_A	170	Crystal Structure Of The Poplar Glutathione Peroxid		5e-61
3e0u_A	166	Crystal Structure Of T. Cruzi Gpx1 Length = 166		2e-45
2wgr_A	169	Combining Crystallography And Molecular Dynamics: T		1e-44
2vup_A	190	Crystal Structure Of A Type Ii Tryparedoxin-Dependa		1e-44
2v1m_A	169	Crystal Structure Of Schistosoma Mansoni Glutathion		2e-44
3dwv_A	187	Glutathione Peroxidase-Type Tryparedoxin Peroxidase		2e-42
2obi_A	183	Crystal Structure Of The Selenocysteine To Cysteine		4e-42
3cmi_A	171	Crystal Structure Of Glutathione-Dependent Phosphol		6e-42
2rm5_A	167	Glutathione Peroxidase-Type Tryparedoxin Peroxidase		6e-42
2gs3_A	185	Crystal Structure Of The Selenocysteine To Glycine		2e-40
2p31_A	181	Crystal Structure Of Human Glutathione Peroxidase 7		2e-31
3cyn_A	189	The Structure Of Human Gpx8 Length = 189		3e-28
3kij_A	180	Crystal Structure Of The Human Pdi-Peroxidase Lengt		4e-28
2f8a_A	208	Crystal Structure Of The Selenocysteine To Glycine		4e-22
2r37_A	207	Crystal Structure Of Human Glutathione Peroxidase 3		2e-21
2he3_A	208	Crystal Structure Of The Selenocysteine To Cysteine		2e-21
1gp1_A	198	The Refined Structure Of The Selenoenzyme Glutathio		2e-21
2i3y_A	215	Crystal Structure Of Human Glutathione Peroxidase 5		2e-20
2lrt_A	152	Solution Structure Of The Uncharacterized Thioredox		4e-05

>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form Length = 170

Iteration: 1
 Score =  230 bits (587), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 133/163 (81%)
Query: 81  TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140
           T+   +S++DFTVKD    DV LS FKGKVLLIVNVAS+CG+T SNY+E++ LYEKYK Q
Sbjct: 5   TSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ 64
Query: 141 GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG 200
           G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIFDK+DVNG N +P+Y+FLK    
Sbjct: 65  GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKW 124
Query: 201 GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           G  GD ++WNF KFLV+K+G+V++RY PTTSP  +E+DI++L+
Sbjct: 125 GIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL 167

>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1 Length = 166

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           KS+Y+F V   DGK   LS+ KG  LLI NVASRCG T   Y   + LY KYK QGF +L
Sbjct: 3   KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVL 62
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG- 204
           AFPCNQF GQEPG+  E+KEFACTRFKA+FPI  K+DVNG    P+Y+F+K++  G  G 
Sbjct: 63  AFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGT 122
Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
             +KWNF  FL+D++G  +ER+ P  S   IEK +  L+
Sbjct: 123 KAIKWNFTSFLIDRHGVPVERFSPGASVEDIEKKLLPLL 161

>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case Of Schistosoma Mansoni Phospholipid Glutathione Peroxidase Length = 169

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S+Y+FTVKDI+G DV L K++G V LIVNVA + G T  NY +L  ++ +   +G  ILA
Sbjct: 10  SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
           FPCNQFGGQEP +  EIK+F   ++  +F +F K+ VNG +   +Y+FLKS   G L + 
Sbjct: 70  FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           +KWNF KFLVD+ G+ ++RY PTT+P+ IE DI +L+
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166

>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant Peroxidase From Trypanosoma Brucei Length = 190

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 113/168 (67%), Gaps = 3/168 (1%)
Query: 77  GVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK 136
           G H +AA+  S++DF V D D K   L + KG  LLI NVAS+CG T   Y   + LY K
Sbjct: 19  GSHMSAAS--SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNK 76
Query: 137 YKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196
           YK+QGF +LAFPCNQFGGQEPG+  EIKEF CT+FKAEFPI  K++VNG N  P+Y+++K
Sbjct: 77  YKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMK 136
Query: 197 SSAGGFL-GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +  G L    +KWNF  FL+D++G  +ER+ P  S   IEK +  L+
Sbjct: 137 KTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184

>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione Peroxidase Length = 169

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S+Y+FTVKDI+G DV L K++G V LIVNVA + G T  NY +L  ++ +   +G  ILA
Sbjct: 10  SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
           FPCNQFGGQEP +  EIK+F   ++  +F +F K+ VNG +   +Y+FLKS   G L + 
Sbjct: 70  FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           +KWNF KFLVD+ G+ ++RY PTT+P+ IE DI +L+
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166

>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 187

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S++DF V D D K   L + KG  LLI NVAS+CG T   Y   + LY KYK+QGF +LA
Sbjct: 25  SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 84
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-D 205
           FP NQFGGQEPG+  EIKEF CT+FKAEFPI  K++VNG N  P+Y+++K +  G L   
Sbjct: 85  FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 144
Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +KWNF  FL+D++G  +ER+ P  S   IE+ +  L+
Sbjct: 145 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL 182

>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant Of Human Phospholipid Hydroperoxide Glutathione Peroxidase (Gpx4) Length = 183

Iteration: 1
 Score =  167 bits (424), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 108/156 (69%), Gaps = 3/156 (1%)
Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           +S+++F+ KDIDG  V L K++G V ++ NVAS+CG T  NY++L  L+ +Y   G  IL
Sbjct: 25  RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 84
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS--AGGFL 203
           AFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G L
Sbjct: 85  AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 143
Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239
           G+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct: 144 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 179

>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae Length = 171

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
             Y     D  G+  P  + KGKV+LIVNVAS+CG TP  Y EL  LY++YK +GF I+ 
Sbjct: 11  EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIG 69
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-D 205
           FPCNQFG QEPGS+ EI +F    +   FPI  K+DVNG N  PVY+FLKS   G LG  
Sbjct: 70  FPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLR 129
Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +KWNFEKFLVDK GKV ERY   T P  + + I++L+
Sbjct: 130 GIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167

>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 167

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S++DF V D D K   L + KG  LLI NVAS+CG T   Y   + LY KYK+QGF +LA
Sbjct: 5   SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 64
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-D 205
           FP NQFGGQEPG+  EIKEF CT+FKAEFPI  K++VNG N  P+Y+++K +  G L   
Sbjct: 65  FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 124
Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +KWNF  FL+D++G  +ER+ P  S   IE+ +  L+
Sbjct: 125 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL 162

>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant Of Human Glutathione Peroxidase 4(Gpx4) Length = 185

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 107/156 (68%), Gaps = 3/156 (1%)
Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  IL
Sbjct: 27  RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRIL 86
Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS--AGGFL 203
           AFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G L
Sbjct: 87  AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 145
Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239
           G+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct: 146 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 181

>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7 Length = 181

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 85  EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
           E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +
Sbjct: 26  EQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNV 85
Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204
           LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++    G
Sbjct: 86  LAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----G 141
Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
               WNF K+LV  +GKV+  + PT S  ++   I  LV
Sbjct: 142 KEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180

>pdb|3CYN|A Chain A, The Structure Of Human Gpx8 Length = 189

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S Y F VKD  G+ V L K+KGKV L+VNVAS C LT  NY  L  L++++    F +LA
Sbjct: 26  SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
           FPCNQFG  EP  + E++ FA   +   FPIF K+ + G    P ++FL  S+       
Sbjct: 86  FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 141
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +WNF K+LV+  G+V++ + P      I  DI  LV
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 178

>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase Length = 180

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 87  SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146
           S Y F VKD  G+ V L K+KGKV L+VNVAS C LT  NY  L  L++++    F +LA
Sbjct: 17  SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
           FPCNQFG  EP  + E++ FA   +   FPIF K+ + G    P ++FL  S+       
Sbjct: 77  FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 132
Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +WNF K+LV+  G+V++ + P      I  DI  LV
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 169

>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant Of Human Glutathione Peroxidase 1 Length = 208

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 92/183 (50%), Gaps = 25/183 (13%)
Query: 86  KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
           +S+Y F+ + + G + V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +
Sbjct: 24  QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 83
Query: 145 LAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS- 198
           L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ + 
Sbjct: 84  LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 143
Query: 199 ------AGGFLGD------------LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240
                 A   + D             V WNFEKFLV  +G  + RY        IE DI+
Sbjct: 144 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 203
Query: 241 KLV 243
            L+
Sbjct: 204 ALL 206

>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3 (Selenocysteine To Glycine Mutant) Length = 207

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 90/174 (51%), Gaps = 22/174 (12%)
Query: 87  SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL
Sbjct: 16  TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 146 AFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA- 199
            FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S  
Sbjct: 75  GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 200 --GGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239
                LG              ++WNFEKFLV  +G  I R+   T+   ++ DI
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 188

>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant Of Human Glutathionine Peroxidase 2 (Gpx2) Length = 208

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 78  VHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY 137
           ++  +   KS YD +  ++DG+ V  + F+G+ +LI NVAS CG T  ++++L+ L  ++
Sbjct: 18  LYFQSMIAKSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRF 77
Query: 138 KTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVY 192
             +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+
Sbjct: 78  PRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVF 136
Query: 193 QFLKSSAGGFLGD-------------------LVKWNFEKFLVDKNGKVIERYPPTTSPF 233
            +LK        D                    V WNFEKFL+   G+   RY  T    
Sbjct: 137 AYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTI 196
Query: 234 QIEKDIQKLV 243
            IE DI++L+
Sbjct: 197 NIEPDIKRLL 206

>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione Peroxidase At 0.2-Nm Resolution Length = 198

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 29/185 (15%)
Query: 86  KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
           +++Y F+ + + G +   LS  +GKVLLI NVAS  G T  +Y++++ L  +   +G  +
Sbjct: 10  RTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVV 69
Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLK- 196
           L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG    P++ FL+ 
Sbjct: 70  LGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLRE 127
Query: 197 ------SSAGGFLGD------------LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238
                   A   + D             V WNFEKFLV  +G  + RY        IE D
Sbjct: 128 VLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPD 187
Query: 239 IQKLV 243
           I+ L+
Sbjct: 188 IETLL 192

>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5 Length = 215

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 22/174 (12%)
Query: 87  SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           ++YD+    ++  + V   ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L
Sbjct: 34  TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVL 92
Query: 146 AFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA- 199
            FPCNQFG QEPG N EI       R    F   F +F+K DVNG     V+ FLK S  
Sbjct: 93  GFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCP 152
Query: 200 --GGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 239
                LG              ++WNFEKFLV  +G  + R+    +   ++ DI
Sbjct: 153 HPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 206

>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like Protein Bvu_1432 From Bacteroides Vulgatus Length = 152

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 85  EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
           E S+ D  +KD+ G    L+  KGKV+LI        ++ ++   L  LY KY +QGFEI
Sbjct: 12  EASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEI 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	1e-109
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	1e-109
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	1e-107
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	1e-106
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	1e-105
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	1e-105
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	1e-102
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	1e-102
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	1e-101
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	6e-96
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	3e-94
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	1e-93
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	1e-14
2lrt_A	152	Uncharacterized protein; structural genomics, thio	2e-13
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	2e-13
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	3e-13
4evm_A	138	Thioredoxin family protein; structural genomics, n	3e-13
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	6e-13
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	1e-12
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	1e-12
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	2e-12
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	2e-12
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	1e-11
3raz_A	151	Thioredoxin-related protein; structural genomics,	2e-11
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	2e-11
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	1e-10
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	1e-10
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	2e-10
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	2e-10
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	2e-10
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	5e-10
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	6e-10
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	1e-09
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	2e-09
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	3e-09
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	4e-09
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	4e-09
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	1e-08
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	1e-08
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	6e-08
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	2e-07
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	2e-07
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	5e-07
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	4e-06
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	6e-06
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	1e-05
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	1e-05
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	2e-05
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	1e-04
3me7_A	170	Putative uncharacterized protein; electron transfe	2e-04
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	8e-04

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Length = 169

 Score =  311 bits (799), Expect = e-109
 Identities = 80/163 (49%), Positives = 113/163 (69%)

Query: 80  ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
           ++  +  S+Y+FTVKDI+G DV L K++G V LIVNVA +CG T  NY +L  ++ +   
Sbjct: 3   SSHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG 62

Query: 140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
           +G  ILAFPCNQFGGQEP +  EIK+F   ++  +F +F K+ VNG +   +Y+FLKS  
Sbjct: 63  KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQ 122

Query: 200 GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
            G L + +KWNF KFLVD+ G+ ++RY PTT+P+ IE DI +L
Sbjct: 123 HGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Length = 170

 Score =  310 bits (796), Expect = e-109
 Identities = 103/163 (63%), Positives = 132/163 (80%)

Query: 80  ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
            T+   +S++DFTVKD    DV LS FKGKVLLIVNVAS+CG+T SNY+E++ LYEKYK 
Sbjct: 4   QTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKD 63

Query: 140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
           QG EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIFDK+DVNG N +P+Y+FLK   
Sbjct: 64  QGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGK 123

Query: 200 GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
            G  GD ++WNF KFLV+K+G+V++RY PTTSP  +E+DI++L
Sbjct: 124 WGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQL 166

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidoreductase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Length = 187

 Score =  306 bits (786), Expect = e-107
 Identities = 81/165 (49%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 79  HATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK 138
               +   S++DF V D D K   L + KG  LLI NVAS+CG T   Y   + LY KYK
Sbjct: 17  RKKMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYK 76

Query: 139 TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS 198
           +QGF +LAFP NQFGGQEPG+  EIKEF CT+FKAEFPI  K++VNG N  P+Y+++K +
Sbjct: 77  SQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKT 136

Query: 199 AGGFLG-DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
             G L    +KWNF  FL+D++G  +ER+ P  S   IE+ +  L
Sbjct: 137 KPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPL 181

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Length = 190

 Score =  305 bits (783), Expect = e-106
 Identities = 83/164 (50%), Positives = 108/164 (65%), Gaps = 1/164 (0%)

Query: 80  ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
           +  +   S++DF V D D K   L + KG  LLI NVAS+CG T   Y   + LY KYK+
Sbjct: 20  SHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS 79

Query: 140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
           QGF +LAFPCNQFGGQEPG+  EIKEF CT+FKAEFPI  K++VNG N  P+Y+++K + 
Sbjct: 80  QGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTK 139

Query: 200 GGFLG-DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
            G L    +KWNF  FL+D++G  +ER+ P  S   IEK +  L
Sbjct: 140 PGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPL 183

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Length = 185

 Score =  302 bits (776), Expect = e-105
 Identities = 76/165 (46%), Positives = 107/165 (64%), Gaps = 3/165 (1%)

Query: 80  ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
            +    +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y  
Sbjct: 21  QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE 80

Query: 140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS-- 197
            G  ILAFPCNQFG QEPGSN EIKEF    +  +F +F K+ VNG +  P+++++K   
Sbjct: 81  CGLRILAFPCNQFGKQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQP 139

Query: 198 SAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
              G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+   
Sbjct: 140 KGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Length = 183

 Score =  301 bits (774), Expect = e-105
 Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
           +S+++F+ KDIDG  V L K++G V ++ NVAS+CG T  NY++L  L+ +Y   G  IL
Sbjct: 25  RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 84

Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS--SAGGFL 203
           AFPCNQFG QEPGSN EIKEF    +  +F +F K+ VNG +  P+++++K      G L
Sbjct: 85  AFPCNQFGKQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 143

Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
           G+ +KWNF KFL+DKNG V++RY P   P  IEKD+   
Sbjct: 144 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Length = 171

 Score =  293 bits (753), Expect = e-102
 Identities = 85/165 (51%), Positives = 103/165 (62%), Gaps = 2/165 (1%)

Query: 79  HATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK 138
           H         Y     D  G+  P  + KGKV+LIVNVAS+CG TP  Y EL  LY++YK
Sbjct: 3   HHHHHHMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYK 61

Query: 139 TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS 198
            +GF I+ FPCNQFG QEPGS+ EI +F    +   FPI  K+DVNG N  PVY+FLKS 
Sbjct: 62  DEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQ 121

Query: 199 AGGFLG-DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
             G LG   +KWNFEKFLVDK GKV ERY   T P  + + I++L
Sbjct: 122 KSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEEL 166

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 181

 Score =  293 bits (752), Expect = e-102
 Identities = 66/163 (40%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 80  ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
            +   E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L      
Sbjct: 21  QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP 80

Query: 140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
             F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++
Sbjct: 81  HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS 140

Query: 200 GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
               G    WNF K+LV  +GKV+  + PT S  ++   I  L
Sbjct: 141 ----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL 179

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB: 3cyn_A Length = 180

 Score =  291 bits (748), Expect = e-101
 Identities = 66/158 (41%), Positives = 90/158 (56%), Gaps = 4/158 (2%)

Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145
            S Y F VKD  G+ V L K+KGKV L+VNVAS C LT  NY  L  L++++    F +L
Sbjct: 16  NSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL 75

Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
           AFPCNQFG  EP  + E++ FA   +   FPIF K+ + G    P ++FL  S+      
Sbjct: 76  AFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKE--- 132

Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
             +WNF K+LV+  G+V++ + P      I  DI  LV
Sbjct: 133 -PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 169

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Length = 208

 Score =  278 bits (713), Expect = 6e-96
 Identities = 62/182 (34%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 86  KSLYDFTVKDIDG-KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
           +S+Y F+ + + G + V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +
Sbjct: 24  QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 83

Query: 145 LAFPCNQFGGQEPGSNPEIKEFAC-----TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
           L FPCNQFG QE   N EI            F+  F +F+K +VNG    P++ FL+ + 
Sbjct: 84  LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 143

Query: 200 GGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240
                D                    V WNFEKFLV  +G  + RY        IE DI+
Sbjct: 144 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 203

Query: 241 KL 242
            L
Sbjct: 204 AL 205

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Length = 215

 Score =  274 bits (703), Expect = 3e-94
 Identities = 66/207 (31%), Positives = 95/207 (45%), Gaps = 22/207 (10%)

Query: 57  HGLFSQSSNLPGFFVKRRSFGVHATAATEKSLYDFTVKDID-GKDVPLSKFKGKVLLIVN 115
           H   S   +L    +  +S  +      + ++YD+    ++  + V   ++ GK +L VN
Sbjct: 4   HHHHSSGVDLGTENLYFQSMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVN 63

Query: 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC-----TR 170
           VA+ CGLT   Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI            
Sbjct: 64  VATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGG 122

Query: 171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL---------------VKWNFEKFL 215
           F   F +F+K DVNG     V+ FLK S       L               ++WNFEKFL
Sbjct: 123 FVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFL 182

Query: 216 VDKNGKVIERYPPTTSPFQIEKDIQKL 242
           V  +G  + R+    +   ++ DI   
Sbjct: 183 VGPDGIPVMRWSHRATVSSVKTDILAY 209

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Length = 207

 Score =  273 bits (699), Expect = 1e-93
 Identities = 66/184 (35%), Positives = 88/184 (47%), Gaps = 22/184 (11%)

Query: 80  ATAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK 138
                  ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+  
Sbjct: 9   CHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLTG-QYIELNALQEELA 67

Query: 139 TQGFEILAFPCNQFGGQEPGSNPEIKEFAC-----TRFKAEFPIFDKVDVNGPNTAPVYQ 193
             G  IL FPCNQFG QEPG N EI            F   F +F+K DVNG      Y 
Sbjct: 68  PFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYT 127

Query: 194 FLKSSAGGFLGDL---------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD 238
           FLK+S       L               ++WNFEKFLV  +G  I R+   T+   ++ D
Sbjct: 128 FLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMD 187

Query: 239 IQKL 242
           I   
Sbjct: 188 ILSY 191

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 29/157 (18%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
            F+  DI+GK V L+  KGK + I +V A+ CG  P       L  L EKY  +    ++
Sbjct: 12  SFSYPDINGKTVSLADLKGKYIYI-DVWATWCG--PCRGELPALKELEEKYAGKDIHFVS 68

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
             C++       +    +                V  +      ++     +        
Sbjct: 69  LSCDK-------NKKAWENM--------------VTKDQLKGIQLHMGTDRTFMDAYL-- 105

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           +       L+D++GK+I       S  +  +   +L+
Sbjct: 106 INGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL 142

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 30/170 (17%)

Query: 75  SFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYS--ELSH 132
           S  +      E S+ D  +KD+ G    L+  KGKV+LI           S      L  
Sbjct: 2   SLEIPEDKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNA--MSAAHNLALRE 59

Query: 133 LYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVY 192
           LY KY +QGFEI     +             K  A       +      D NG  ++ + 
Sbjct: 60  LYNKYASQGFEIYQISLDG-------DEHFWKTSA---DNLPWVCV--RDANGAYSSYIS 107

Query: 193 QFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
            +            V      FLV++N ++  R         +++ I+KL
Sbjct: 108 LY-----------NVTNLPSVFLVNRNNELSARGENIK---DLDEAIKKL 143

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 29/159 (18%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGL----TPSNYSELSHLYEKYKTQGFEI 144
            F+   +DGK    +  KGK  + VN  A+ C       P    ++  + + + ++GF  
Sbjct: 16  SFSGVTVDGKPFSSASLKGKAYI-VNFFATWCPPCRSEIP----DMVQVQKTWASRGFTF 70

Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204
           +    N+         P +K +        +P+   +       A    F     GG   
Sbjct: 71  VGIAVNE-------QLPNVKNYM-KTQGIIYPVM--MATPELIRA----FNGYIDGG--- 113

Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
             +      F++D +G V        S    ++ ++  +
Sbjct: 114 --ITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMAL 150

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 29/156 (18%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
            F++ D+ GK V  +  +GKV L +N     C          ++      YK + F++LA
Sbjct: 10  AFSLPDLHGKTVSNADLQGKVTL-INFWFPSCP--GCVSEMPKIIKTANDYKNKNFQVLA 66

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
                   +       ++++    +   F +    D +       +              
Sbjct: 67  VAQPIDPIE------SVRQYV-KDYGLPFTVM--YDADK-AVGQAFG------------- 103

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
            +      L+ K G++++ Y       ++ ++I   
Sbjct: 104 TQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA 139

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 25/156 (16%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
           DF +  +DGK   LS +KGK + +    AS C       S  +   + ++       +  
Sbjct: 4   DFELMGVDGKTYRLSDYKGKKVYL-KFWASWCS--ICLASLPDTDEIAKEAGDDYVVLTV 60

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
                 G +   S  + K +                       PV            G  
Sbjct: 61  ---VSPGHKGEQSEADFKNW--------------YKGLDYKNLPVLVDPSGKLLETYG-- 101

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
           V+    +  +DK GK+++ +P       I + +++L
Sbjct: 102 VRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 63.4 bits (155), Expect = 6e-13
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 30/156 (19%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
           +F ++D +GK + LS  KGK +  +N   + C   P       +++ Y+ +K+QG EI+A
Sbjct: 8   NFVLEDTNGKRIELSDLKGKGVF-LNFWGTWCE--PCKKEFPYMANQYKHFKSQGVEIVA 64

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
               +       S   +  F    +   FP+   +D +       Y              
Sbjct: 65  VNVGE-------SKIAVHNFM-KSYGVNFPVV--LDTDR-QVLDAYD------------- 100

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
           V      FL++  GKV++    T +   I   +  +
Sbjct: 101 VSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI 136

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 17/155 (10%), Positives = 43/155 (27%), Gaps = 28/155 (18%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYS--ELSHLYEKYKTQGFEILAF 147
                  D K        G+  L+   A+      S     +L++   K+      + + 
Sbjct: 15  RIEFLGNDAK-ASFHNQLGRYTLLNFWAAYDA--ESRARNVQLANEVNKFGPDKIAMCSI 71

Query: 148 PCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLV 207
             ++           I        K +                     +S         +
Sbjct: 72  SMDE--------KESIFTETVKIDKLDLST----------QFHEGLGKESELYKKYD--L 111

Query: 208 KWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
           +  F+ FL++  G +I       +P ++ + ++ +
Sbjct: 112 RKGFKNFLINDEGVIIAANV---TPEKLTEILKAI 143

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 32/158 (20%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
             T  D+ G  V L+ FKGK +L+ +   + C           L   Y  +K +GF I  
Sbjct: 11  AITGIDLKGNSVSLNDFKGKYVLV-DFWFAGCS--WCRKETPYLLKTYNAFKDKGFTIYG 67

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFP-IFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
              ++          + K+      K+ +  +  + D         Y             
Sbjct: 68  VSTDR-------REEDWKKAI-EEDKSYWNQVLLQKDDVKD-VLESYC------------ 106

Query: 206 LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            +       LVD  GK++ +         +   ++K V
Sbjct: 107 -IVGFPHIILVDPEGKIVAKELRGD---DLYNTVEKFV 140

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 28/158 (17%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGL----TPSNYSELSHLYEKYKTQGFEI 144
             T+K  D +   +   K K  LI    AS C L                +  K     +
Sbjct: 20  MSTMKTADNRPASVYLKKDKPTLI-KFWASWCPLCLSELGQ----AEKWAQDAKFSSANL 74

Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204
           +      F  ++   + E +++       + P+    D  G   A               
Sbjct: 75  ITVASPGFLHEK--KDGEFQKWYAGLNYPKLPVV--TDNGG-TIAQNLN----------- 118

Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
            +  +     L+ K+G V      + +  Q    I+  
Sbjct: 119 -ISVYP-SWALIGKDGDVQRIVKGSINEAQALALIRNP 154

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 27/140 (19%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG---LTPSNYSELSHLYEKYKTQGFEILA 146
           DFT   + G +  +S+ K +  ++      C         ++E+    E  +     +LA
Sbjct: 9   DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLA 68

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
              ++       +  E    A       + + ++K       T  +Y             
Sbjct: 69  IYPDE-------NREEWATKA-VYMPQGWIVGWNKAGDI--RTRQLYD------------ 106

Query: 206 LVKWNFEKFLVDKNGKVIER 225
            ++     +L+D   +VI +
Sbjct: 107 -IRATPTIYLLDGRKRVILK 125

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 33/158 (20%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
           DF +    G  V LS   G V+  ++  AS CG  P   S   ++ +  KYK +GF+++A
Sbjct: 11  DFALPGKTGV-VKLSDKTGSVVY-LDFWASWCG--PCRQSFPWMNQMQAKYKAKGFQVVA 66

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
              +           +  +F   +  AEF +    D  G  T  +Y              
Sbjct: 67  VNLDA-------KTGDAMKFL-AQVPAEFTVA--FDPKG-QTPRLYG------------- 102

Query: 207 VKWNFEKFLVDKNGKVIERY--PPTTSPFQIEKDIQKL 242
           VK     FL+D+NGKV+ ++          +E+ I   
Sbjct: 103 VKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAA 140

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 30/159 (18%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGL----TPSNYSELSHLYEKYKTQGFEI 144
           D      D     L   K  V + VN+ A+ CG      P     +S  Y+  K    ++
Sbjct: 6   DELAGWKDNTPQSLQSLKAPVRI-VNLWATWCGPCRKEMP----AMSKWYKAQKKGSVDM 60

Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204
           +    +        ++  I  F   +    +PI+     N  N    Y           G
Sbjct: 61  VGIALD--------TSDNIGNFL-KQTPVSYPIWRYTGANSRNFMKTY-----------G 100

Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           + V       +        +      +   +   ++   
Sbjct: 101 NTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 36/159 (22%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYS--ELSHLYEKYKTQGFEILAF 147
           +  + D  G    L   + K  ++    S+CG         +L   + K + +G ++ A 
Sbjct: 13  NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCG--HCQQETPKLYDWWLKNRAKGIQVYAA 70

Query: 148 PCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV---DVNGPNT-APVYQFLKSSAGGFL 203
                       N E K+    +F     I   +   D          Y           
Sbjct: 71  ------------NIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD---------- 108

Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
              +      +++DKN  +I +         ++  + + 
Sbjct: 109 ---IYATPVLYVLDKNKVIIAKR---IGYENLDDFLVQY 141

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 29/141 (20%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG----LTPSNYSELSHLYEKYKTQGFEIL 145
           +FT     G    L +F  +  L+      C     +          +      +  ++L
Sbjct: 13  NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIE-GLKASPVINGFTAAKKLKVL 71

Query: 146 AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLG 204
           +   ++          E K+     F  E+   +DK  V       +Y            
Sbjct: 72  SIYPDE-------ELDEWKKHR-NDFAKEWTNGYDKELVI--KNKNLYD----------- 110

Query: 205 DLVKWNFEKFLVDKNGKVIER 225
             ++     +L+DKN  V+ +
Sbjct: 111 --LRAIPTLYLLDKNKTVLLK 129

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 31/160 (19%)

Query: 90  DFTVKDIDGKDVPLS--KFKGKVLLIVNV-ASRCG--LTPSNYSELSHLYEKYKT-QGFE 143
            F++ +  G+ +  S   FK K LLI N  AS         + SEL  +Y+KYK  +   
Sbjct: 13  FFSLPNAKGEKITRSSDAFKQKSLLI-NFWASWNDSISQKQSNSELREIYKKYKKNKYIG 71

Query: 144 ILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL 203
           +L    +           + K+    R   ++      D  G N+    Q+         
Sbjct: 72  MLGISLDV-------DKQQWKDAI-KRDTLDWEQV--CDFGGLNSEVAKQY--------- 112

Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
              +       L+  +GK++ +        +++K I+ +V
Sbjct: 113 --SIYKIPANILLSSDGKILAKNLRGE---ELKKKIENIV 147

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 31/158 (19%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
           DFT+  ++G+ V LS  KG+V++ VN  A+ C   P       +  L      + F +L 
Sbjct: 10  DFTLNTLNGEVVKLSDLKGQVVI-VNFWATWCP--PCREEIPSMMRLNAAMAGKPFRMLC 66

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
                    + G    ++EF   +     P+   +D +      +Y              
Sbjct: 67  V------SIDEGGKVAVEEFF-RKTGFTLPVL--LDADK-RVGKLYG------------- 103

Query: 207 VKWNFEKFLVDKNGKVIERY--PPTTSPFQIEKDIQKL 242
                E F++D++G ++++          ++   +   
Sbjct: 104 TTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 141

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 28/169 (16%)

Query: 75  SFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELS 131
           S    A          F +K I+G+D+ +   KG+  + ++   S C   P      +  
Sbjct: 2   SGAAQAEEKQPAVPAVFLMKTIEGEDISIPN-KGQKTI-LHFWTSWCP--PCKKELPQFQ 57

Query: 132 HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPV 191
             Y+ + +   +++    N    ++  +   +++F     K  FPI   +D  G      
Sbjct: 58  SFYDAHPSDSVKLVTV--NLVNSEQ--NQQVVEDFI-KANKLTFPIV--LDSKG-ELMKE 109

Query: 192 YQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240
           Y              +      FL+++ G++ +      +  Q+++  +
Sbjct: 110 YH-------------IITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGL----TPSNYSELSHLYEKYKTQGFEI 144
           +F +  + G++  L++++GK++L VN  AS C       PS    +  L + +      +
Sbjct: 23  NFKLPTLSGENKSLAQYRGKIVL-VNFWASWCPYCRDEMPS----MDRLVKSFPKGDLVV 77

Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204
           LA    +             E    R    F      D  G      Y            
Sbjct: 78  LAVNVEK----------RFPEKY-RRAPVSFNFL--SDATG-QVQQRYG----------- 112

Query: 205 DLVKWNFEKFLVDKNGKVIERY--PPTTSPFQIEKDIQKL 242
                  + F+VD+ G + +R          ++   ++ L
Sbjct: 113 --ANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSL 150

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 27/156 (17%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148
           DF + D  G+ V  +      ++     AS C       +E   L+   +  G       
Sbjct: 13  DFLLLDPKGQPVTPATVSKPAVI--VFWASWC---TVCKAEFPGLHRVAEETGVPFYV-- 65

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLGDLV 207
                 +   +   + E+    +    P+     D      A  ++             V
Sbjct: 66  ---ISREPRDTREVVLEYM-KTYPRFIPLLASDRDRPH-EVAARFK-------------V 107

Query: 208 KWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
                 F+VD+ GKV+  +        +   +    
Sbjct: 108 LGQPWTFVVDREGKVVALFAGRAGREALLDALLLAG 143

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 55.5 bits (134), Expect = 6e-10
 Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 36/167 (21%)

Query: 90  DFTVKDI--DGKDVPLSKFKGKVLLIVNVASRCG-----LTPSNYSELSHLYEKYKTQGF 142
           +  ++       D+ L+  +GKV++I      C        P        +   +     
Sbjct: 8   ELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIP----LAQKVRAAFPEDKV 63

Query: 143 EILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGF 202
            +L         +   +   +K F    ++ +FP+   VD  G    P            
Sbjct: 64  AVLGLHTVFEHHEA-MTPISLKAFL-HEYRIKFPVG--VDQPGDGAMPR----------- 108

Query: 203 LGDLVKWNFE------KFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
                   ++        L+DK G +   +    S   +  +I  L+
Sbjct: 109 ----TMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 37/167 (22%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCG----LTPSNYSELSHLYEKYKTQGFEI 144
            F++  IDG+ + L+   G V+++    A+ C     +       L  L EKY+      
Sbjct: 19  SFSLTTIDGEVISLNNVGGDVVIL-WFMAAWCPSCVYMAD----LLDRLTEKYREISVIA 73

Query: 145 LAF---------PCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFL 195
           + F           N+ G   P +    ++F    +     I   V  +G +    +   
Sbjct: 74  IDFWTAEALKALGLNKPGYPPPDTPEMFRKFI-ANYGDPSWIM--VMDDG-SLVEKFN-- 127

Query: 196 KSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
                      V+      ++DK+  V+     T S  ++E  I+ +
Sbjct: 128 -----------VRSIDYIVIMDKSSNVLYAG-TTPSLGELESVIKSV 162

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 17/160 (10%), Positives = 48/160 (30%), Gaps = 22/160 (13%)

Query: 90  DFTVKD-IDGKDVPLSKFKGKVLLIVNVASRCG-----LTPSNYSELSHLYEKYKTQGFE 143
           +  V++ ++ + +     +GKV+++      C        P    +   ++        +
Sbjct: 11  ELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVP----QAQKIHRMIDESQVQ 66

Query: 144 ILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL 203
           ++             +   +K F    F  +FP+   +   G       +  +       
Sbjct: 67  VIGLHSVFEHHDV-MTPEALKVFI-DEFGIKFPVAVDMPREGQRIPSTMKKYRLEG---- 120

Query: 204 GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
                      L D+ G++ +        F +   +  L+
Sbjct: 121 -----TPS-IILADRKGRIRQVQFGQVDDFVLGLLLGSLL 154

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 34/145 (23%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCG-----LTPSNYSELSHLYEKYKTQGFE 143
           D   +D DGK   LS F+GK LL+ N+ A+ C      + P+    L  L  K     FE
Sbjct: 42  DLAFEDADGKPKKLSDFRGKTLLV-NLWATWCVPCRKEM-PA----LDELQGKLSGPNFE 95

Query: 144 ILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL 203
           ++A         +     + K F             + ++        +   K+     L
Sbjct: 96  VVAI------NIDTRDPEKPKTF-----------LKEANLTRL---GYFNDQKAKVFQDL 135

Query: 204 GDLVKWNF--EKFLVDKNGKVIERY 226
             + +        LVD  G  I   
Sbjct: 136 KAIGRALGMPTSVLVDPQGCEIATI 160

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 35/161 (21%)

Query: 90  DFTVKDIDGKDVPLSK--FKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKT-QGFE 143
            F++ +  G+ +  S   F+ + LL+ N  AS C   P   +  EL  L ++YK  + F 
Sbjct: 13  YFSLPNEKGEKLSRSAERFRNRYLLL-NFWASWCD--PQPEANAELKRLNKEYKKNKNFA 69

Query: 144 ILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGF 202
           +L    +             +     +    +    D   ++   TA  Y          
Sbjct: 70  MLGISLDI-------DREAWETAI-KKDTLSWDQVCDFTGLSSE-TAKQYA--------- 111

Query: 203 LGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
               +       L+   GK++ R         +   +++L+
Sbjct: 112 ----ILTLPTNILLSPTGKILARD---IQGEALTGKLKELL 145

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 25/157 (15%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
              +     K + L   +GKV+L ++  A  C       +   +   Y+ YK  G  ++ 
Sbjct: 64  TGWLNTPGNKPIDLKSLRGKVVL-IDFWAYSCI--NCQRAIPHVVGWYQAYKDSGLAVIG 120

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
               ++  ++   N  + + A       +PI   +D N   T   Y+             
Sbjct: 121 VHTPEYAFEKVPGN--VAKGA-ANLGISYPIA--LDNNY-ATWTNYR------------- 161

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
            ++   ++L+D  G V             E  +++L+
Sbjct: 162 NRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 32/161 (19%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
           DFT+   DGK V LS  +GKV+++    AS CG          +            +   
Sbjct: 15  DFTITLTDGKQVTLSSLRGKVVML-QFTASWCG--VCRKEMPFIEKDIWLKHKDNADFAL 71

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
              ++    EP     +  FA       +P+   +D    +    Y              
Sbjct: 72  IGIDR---DEPLEK--VLAFA-KSTGVTYPLG--LDPGA-DIFAKYA------------- 109

Query: 207 VKWNF--EKFLVDKNGKVIERYPPTTSPF--QIEKDIQKLV 243
           ++        L+D+ GK+++            + + I +++
Sbjct: 110 LRDAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQINEML 150

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 82  AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCG----LTPSNYSELSHLYEK 136
           +   K L   T       +V L    GK + +    AS C      TP     L+  YEK
Sbjct: 2   SGLAKYLPGATNLLSKSGEVSLGSLVGKTVFL-YFSASWCPPCRGFTP----VLAEFYEK 56

Query: 137 Y-KTQGFEILA 146
           +   + FE++ 
Sbjct: 57  HHVAKNFEVVL 67

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 28/159 (17%)

Query: 90  DFTVKD--IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEI 144
           + T +   ++G+         K  L ++  +  C       +  +++   +KY+     +
Sbjct: 9   ELTGEKAWLNGEVTREQLIGEKPTL-IHFWSISCH--LCKEAMPQVNEFRDKYQ-DQLNV 64

Query: 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204
           +A   +    ++     +IKE A        PIF  VD +       ++           
Sbjct: 65  VAV--HMPRSEDDLDPGKIKETA-AEHDITQPIF--VDSDH-ALTDAFE----------- 107

Query: 205 DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
                    ++ DK G++       +    +EK + +++
Sbjct: 108 -NEYVP-AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 19/158 (12%), Positives = 37/158 (23%), Gaps = 34/158 (21%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
            FT   + G     +  +GK  + +      C     N     LS +           + 
Sbjct: 6   QFTATTLSGAPFDGASLQGKPAV-LWFWTPWCP--FCNAEAPSLSQVAAANP--AVTFVG 60

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
                           ++ F  +++   F      D +G      Y              
Sbjct: 61  IATRA-------DVGAMQSFV-SKYNLNFTNL--NDADG-VIWARYN------------- 96

Query: 207 VKWNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQKL 242
           V W         +G    +       S  ++   +  L
Sbjct: 97  VPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 82  AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG----LTPSNYSELSHLYEKY 137
           +  +K L           +V +    GK++     AS C      TP    +L   Y+K+
Sbjct: 2   SGLDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTP----QLIEFYDKF 57

Query: 138 -KTQGFEILA 146
            +++ FE++ 
Sbjct: 58  HESKNFEVVF 67

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 23/157 (14%), Positives = 41/157 (26%), Gaps = 32/157 (20%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYS--ELSHLYEKYKTQGFEILA 146
            F+ K +DG D       GK  + +   A  C           +  +   +    F    
Sbjct: 7   QFSAKTLDGHDFHGESLLGKPAV-LWFWAPWCP--TCQGEAPVVGQVAASHPEVTF---- 59

Query: 147 FPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL 206
                 G       P ++EF        F      D +G +    +              
Sbjct: 60  -----VGVAGLDQVPAMQEFVNKYPVKTFTQL--ADTDG-SVWANFG------------- 98

Query: 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
           V        VD +G V       +   ++ + +  L 
Sbjct: 99  VTQQPAYAFVDPHGNVDVVRGRMSQD-ELTRRVTALT 134

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 33/144 (22%)

Query: 90  DFTVKDIDGKDVPLSKF--KGKVLLIVNVASRCG----LTPSNYSELSHLYEKYKTQG-- 141
              +   +  +V  ++      ++     A  C      TP     L+ +Y +       
Sbjct: 6   GIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTP----ILADMYSELVDDSAP 61

Query: 142 FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG 201
           FEI+    ++       S  ++ ++             +   +     P      S+   
Sbjct: 62  FEIIFVSSDR-------SEDDMFQY-----------MMESHGDWLA-IPYRSGPASNVTA 102

Query: 202 FLGDLVKWNFEKFLVDKNGKVIER 225
             G  +       +V K+G +I  
Sbjct: 103 KYG--ITGIPALVIVKKDGTLISM 124

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 40/168 (23%)

Query: 90  DFTVKDI--DGKDVPLSKFKGKVLLIVNV-ASRCGL----TPSNYSELSHLYEKYKTQG- 141
           D     +  +G  + LS F+ +V++ +N     C      +     +L  ++E+ +  G 
Sbjct: 39  DIGGDSLMEEGTQINLSDFENQVVI-LNAWGQWCAPCRSESD----DLQIIHEELQAAGN 93

Query: 142 -----FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196
                  +L             +  +        F  +  +            P      
Sbjct: 94  GDTPGGTVLGI-----------NVRDYSRDIAQDFVTDNGL----------DYPSIYDPP 132

Query: 197 SSAGGFLGDLVKWNF-EKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
                 LG +         ++DK  +    +    +   +      LV
Sbjct: 133 FMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 86  KSLYDFTVKDID--GKDVPLSKFKGKVLLIVNVASRCG----LTPSNYSELSHLYEKYKT 139
           K  + ++   +     D+ L    GK +     AS C      TP    +L   Y+ +  
Sbjct: 4   KKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTP----QLIDFYKAHAE 59

Query: 140 Q-GFEILA 146
           +  FE++ 
Sbjct: 60  KKNFEVML 67

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Length = 218

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 90  DFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148
           DF + D  G    L++FK    LL+  +++RC         L+     Y  QG  ++A  
Sbjct: 40  DFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAIN 99

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFP 176
            N        +   +       +   FP
Sbjct: 100 SNDAQAFPEETLERVGAEV-KAYGYGFP 126

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 82  AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG----LTPSNYSELSHLYEKY 137
           +   K L +            +    GK +     AS C      TP    +L   YEK+
Sbjct: 22  SGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTP----QLVEFYEKH 77

Query: 138 K-TQGFEILA 146
             ++ FEI+ 
Sbjct: 78  HDSKNFEIIL 87

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 49/179 (27%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRC-GLTPSNYSELSHLYEKYKTQGF------ 142
            FT ++ DGK+V L   KG+V L   + + C  + P   + ++ L +K K +        
Sbjct: 15  PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 74

Query: 143 ----------EILAFPCNQFGGQEPGSN-------PEIKEFACTRFKAEFPIFDKVDVNG 185
                     + L      +       +        EI+EFA   FKA      K +   
Sbjct: 75  FSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIV---KKPEGE- 130

Query: 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--TSPFQIEKDIQKL 242
                  Q +  S           +F  +LV  +GKV++ Y     T    I  D++  
Sbjct: 131 ------DQVIHQS-----------SF--YLVGPDGKVLKDYNGVENTPYDDIISDVKSA 170

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 20/162 (12%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRC-GLTPSNYSELSHLYEKYKTQG--FEILA 146
           D T+ D  G +  L   KGK +++  + + C    P     L  +  K  T G  F ++ 
Sbjct: 10  DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVIT 69

Query: 147 FPCNQFGGQEPGSNPEI-KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 205
           F  +      P    E  K F    +  +   +    V    +  +++ L +    F   
Sbjct: 70  FTFD------PKDTLEDIKRFQ-KEYGIDGKGW--KVVKAKTSEDLFKLLDAI--DFRFM 118

Query: 206 LVKWNFE----KFLVDKNGKVIERYPPT-TSPFQIEKDIQKL 242
               +F       ++    ++ +       +  +    ++  
Sbjct: 119 TAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA 160

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Length = 188

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
           D  + D  G    LS+F   +L +V + + C     +  EL  L E+Y+      +    
Sbjct: 15  DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR-GKVAFVGINA 73

Query: 150 NQFGGQEPGSNPEIKEFA 167
           N +      +  ++  FA
Sbjct: 74  NDYEKYPEDAPEKMAAFA 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	100.0
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	100.0
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	100.0
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	100.0
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	100.0
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	100.0
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	100.0
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	100.0
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	100.0
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	100.0
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.98
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.97
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.97
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.96
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.96
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.96
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.96
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.96
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.96
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.96
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.96
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.96
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.96
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.96
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.96
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.95
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.95
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.95
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.95
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.95
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.95
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.95
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.95
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.95
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.95
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.95
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.95
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.95
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.95
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.95
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.95
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.95
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.95
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.95
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.95
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.95
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.94
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.94
3me7_A	170	Putative uncharacterized protein; electron transfe	99.94
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.94
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.94
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.94
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.94
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.94
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.94
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.94
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.94
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.94
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.94
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.94
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.94
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.94
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.94
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.94
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.94
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.94
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.94
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.94
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.93
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.93
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.93
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.93
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.93
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.93
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.93
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.93
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.93
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.93
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.93
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.93
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.93
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.93
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.93
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.93
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.93
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.93
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.93
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.92
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.92
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.92
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.86
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.92
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.92
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.91
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.91
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.9
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.89
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.89
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.81
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.88
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.87
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.86
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.86
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.86
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.85
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.73
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.73
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.7
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.69
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.67
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.62
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.62
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.58
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.57
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.56
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.55
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.55
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.55
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.55
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.54
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.54
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.54
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.54
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.54
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.53
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.53
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.53
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.52
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.52
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.52
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.52
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.52
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.52
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.51
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.51
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.27
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.51
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.51
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.51
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.51
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.51
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.51
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.51
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.51
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.5
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.5
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.5
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.5
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.5
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.49
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.49
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.49
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.49
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.49
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.48
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.47
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.47
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.47
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.47
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.46
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.46
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.46
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.46
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.45
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.45
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.45
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.45
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.44
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.44
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.44
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.44
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.43
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.43
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.42
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.42
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.42
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.42
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.42
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.42
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.39
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.39
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.39
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.38
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.38
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.37
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.36
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.05
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.35
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.34
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.31
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.3
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.3
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.29
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.28
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.28
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.27
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.26
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.26
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.23
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.18
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.16
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.15
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.14
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.13
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.13
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.13
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.13
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.11
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.1
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.09
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.07
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.07
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.04
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.02
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.0
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.95
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.95
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.93
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.9
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.88
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.86
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.83
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.8
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	98.75
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.74
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.74
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.68
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.65
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.62
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.58
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.54
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.54
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.45
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.4
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.39
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.38
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.37
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.35
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.32
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.28
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.26
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.22
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.16
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.12
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.05
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.01
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.01
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.99
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.94
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.89
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.88
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.74
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.68
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.59
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.54
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.53
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.51
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.5
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.42
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.42
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.33
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.29
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.25
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	97.19
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.06
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.0
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	96.88
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	96.83
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	96.79
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.7
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.6
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.58
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.56
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.41
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.36
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	95.59
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	95.46
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	95.08
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	94.95
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	94.56
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	94.38
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	94.37
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	94.23
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	94.19
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	94.11
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	93.56
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	91.21
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	90.78
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	90.62
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	90.27
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	89.65
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	89.65
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	88.76
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	88.29
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	88.16
3l78_A	120	Regulatory protein SPX; transcription, transcripti	87.77
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	87.43
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	87.36
3fz4_A	120	Putative arsenate reductase; APC61768, structural	86.26
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	86.13
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	85.31
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	85.17
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	84.66
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	84.04
3gkx_A	120	Putative ARSC family related protein; ARSC family	83.64
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	82.72
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	81.41
3rdw_A	121	Putative arsenate reductase; structural genomics,	80.79

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=100.00  E-value=1.7e-33  Score=219.11  Aligned_cols=165  Identities=48%  Similarity=0.909  Sum_probs=143.7

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ..++|..+|+|+++|.+|+++++++++||++||+||++||++|+.+++.|++++++|+++|++||+|++|++..+++++.
T Consensus         4 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~   83 (169)
T 2v1m_A            4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAE   83 (169)
T ss_dssp             ---CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCH
T ss_pred             cccCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999998777777889


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      +.+++|+.++++++||++.+.|.++.....+|+++.....+..+..|.++|++||||++|+|++++.|..+++++.+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~  163 (169)
T 2v1m_A           84 AEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIM  163 (169)
T ss_dssp             HHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHH
Confidence            99999932788999999976677777666778777655445444457888999999999999999999889999999999


Q ss_pred             HHhhC
Q 026011          241 KLVVA  245 (245)
Q Consensus       241 ~ll~~  245 (245)
                      ++|++
T Consensus       164 ~ll~~  168 (169)
T 2v1m_A          164 ELLEK  168 (169)
T ss_dssp             HHHHC
T ss_pred             HHhcc
Confidence            99864

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=227.55  Aligned_cols=162  Identities=38%  Similarity=0.681  Sum_probs=142.8

Q ss_pred             ccccCcccCeEEEcCC-CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           82 AATEKSLYDFTVKDID-GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~-G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ...+..+|+|+++|++ |++++|++++||+|||+||++||++|+ +++.|++++++|+++|++||+|++|+++.+++++.
T Consensus        29 ~~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~  107 (215)
T 2i3y_A           29 KDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDN  107 (215)
T ss_dssp             CCCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCH
T ss_pred             ccccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCH
Confidence            3456789999999999 999999999999999999999999999 99999999999999999999999999888888899


Q ss_pred             HHHHHHHHH------hcCCCcceeeccCCCCCCcchhhhhhhcccCC---CC------------CCccccceeEEEECCC
Q 026011          161 PEIKEFACT------RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG---FL------------GDLVKWNFEKFLVDKN  219 (245)
Q Consensus       161 ~~~~~~~~~------~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~---~~------------~~~i~~~P~~~liD~~  219 (245)
                      +++++|+ +      +++++||++.|.|.++....++|+++.....+   ..            +..|.|+|++||||++
T Consensus       108 ~~i~~f~-~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~  186 (215)
T 2i3y_A          108 KEILPGL-KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPD  186 (215)
T ss_dssp             HHHHHHH-HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTT
T ss_pred             HHHHHHH-HhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCC
Confidence            9999999 6      89999999988888888778888877643221   11            1247788999999999


Q ss_pred             CcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          220 GKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       220 G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                      |+|+.++.|..+++++++.|+++|++
T Consensus       187 G~vv~~~~g~~~~~~l~~~I~~ll~~  212 (215)
T 2i3y_A          187 GIPVMRWSHRATVSSVKTDILAYLKQ  212 (215)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHGGG
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            99999999988999999999999863

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=221.77  Aligned_cols=163  Identities=47%  Similarity=0.867  Sum_probs=143.8

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ....+|+.+|+|+++|.+|+++++++++||++||+||++||++|+.+++.|++++++|+++|++||+|++|++..+++++
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~  100 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGS  100 (185)
T ss_dssp             GGGGGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSC
T ss_pred             hhccCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCC
Confidence            44668999999999999999999999999999999999999999999999999999999999999999999877777788


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccC--CCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                      .+++++|+ ++++++||++.+.|.++....++|+++....+  +..+..+.++|++||||++|+|++++.|..+++++++
T Consensus       101 ~~~~~~~~-~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  179 (185)
T 2gs3_A          101 NEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK  179 (185)
T ss_dssp             HHHHHHHH-HHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGG
T ss_pred             HHHHHHHH-HHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHH
Confidence            99999999 89999999997767777766678887765443  3334457788999999999999999999889999999


Q ss_pred             HHHHHh
Q 026011          238 DIQKLV  243 (245)
Q Consensus       238 ~l~~ll  243 (245)
                      .|+++|
T Consensus       180 ~i~~lL  185 (185)
T 2gs3_A          180 DLPHYF  185 (185)
T ss_dssp             GHHHHC
T ss_pred             HHHHhC
Confidence            998875

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=100.00  E-value=3.8e-33  Score=225.63  Aligned_cols=164  Identities=37%  Similarity=0.682  Sum_probs=142.2

Q ss_pred             ccccCcccCeEEEcCC-CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           82 AATEKSLYDFTVKDID-GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~-G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ...+..+|+|+++|++ |+.++|++++||+|||+||++||++|+.++|.|++++++|+++|++||+|++|+++.+++++.
T Consensus        20 ~~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~   99 (208)
T 2f8a_A           20 FQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKN   99 (208)
T ss_dssp             --CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCH
T ss_pred             hhhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCH
Confidence            3467789999999999 999999999999999999999999999999999999999999999999999998877888889


Q ss_pred             HHHHHHHH-----HhcCCCcceeeccCCCCCCcchhhhhhhcccCC-------CC------------CCccccceeEEEE
Q 026011          161 PEIKEFAC-----TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG-------FL------------GDLVKWNFEKFLV  216 (245)
Q Consensus       161 ~~~~~~~~-----~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~-------~~------------~~~i~~~P~~~li  216 (245)
                      +++++|+.     .+++++||++.|.+.++....++|++++...++       ..            ...|.++|++|||
T Consensus       100 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflI  179 (208)
T 2f8a_A          100 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV  179 (208)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred             HHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEE
Confidence            99999993     289999999988888887777788877543321       11            1247888999999


Q ss_pred             CCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          217 DKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       217 D~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                      |++|+|+.++.|..+++++++.|+++|++
T Consensus       180 D~~G~i~~~~~g~~~~~~l~~~I~~ll~~  208 (208)
T 2f8a_A          180 GPDGVPLRRYSRRFQTIDIEPDIEALLSQ  208 (208)
T ss_dssp             CTTSCEEEEECTTSCGGGGHHHHHHHHC-
T ss_pred             cCCCcEEEEeCCCCCHHHHHHHHHHHhhC
Confidence            99999999999999999999999999864

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=100.00  E-value=7.8e-33  Score=223.51  Aligned_cols=160  Identities=41%  Similarity=0.679  Sum_probs=139.2

Q ss_pred             cccCcccCeEEEcCC-CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           83 ATEKSLYDFTVKDID-GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~-G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      .....+|+|+++|++ |+.++|++++||+|||+||++||++| .+++.|++++++|+++|++||+|++|++..+++++.+
T Consensus        12 ~~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~   90 (207)
T 2r37_A           12 GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENS   90 (207)
T ss_dssp             ---CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHH
T ss_pred             cccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHH
Confidence            355679999999999 99999999999999999999999999 7999999999999999999999999988888888899


Q ss_pred             HHHHHHHH------hcCCCcceeeccCCCCCCcchhhhhhhcccCC---CC------------CCccccceeEEEECCCC
Q 026011          162 EIKEFACT------RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG---FL------------GDLVKWNFEKFLVDKNG  220 (245)
Q Consensus       162 ~~~~~~~~------~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~---~~------------~~~i~~~P~~~liD~~G  220 (245)
                      ++++|+ +      +++++||++.|.|.+|....++|+++....++   ..            +..|.|+|++||||++|
T Consensus        91 ~i~~f~-~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G  169 (207)
T 2r37_A           91 EILPTL-KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG  169 (207)
T ss_dssp             HHHHHH-HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTS
T ss_pred             HHHHHH-HhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCC
Confidence            999999 6      89999999988888888778888877543221   11            12477889999999999


Q ss_pred             cEEEecCCCCChHHHHHHHHHHhh
Q 026011          221 KVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       221 ~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      +|++++.|..+++++++.|+++|+
T Consensus       170 ~i~~~~~g~~~~~~l~~~I~~ll~  193 (207)
T 2r37_A          170 IPIMRWHHRTTVSNVKMDILSYMR  193 (207)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999998899999999999885

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=219.98  Aligned_cols=163  Identities=48%  Similarity=0.885  Sum_probs=143.8

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ...++|+.+|+|+++|.+|+++++++++||++||+||++||++|+.+++.|++++++|+++|++||+|++|++..+++++
T Consensus        19 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~   98 (183)
T 2obi_A           19 DDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGS   98 (183)
T ss_dssp             CCGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSC
T ss_pred             cCCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCC
Confidence            34578999999999999999999999999999999999999999999999999999999989999999999877777889


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccC--CCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                      .+++++|+ ++++++||++.+.|.++....++|+++....+  +..+..|.++|++||||++|+|++++.|..+++++++
T Consensus        99 ~~~~~~~~-~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  177 (183)
T 2obi_A           99 NEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK  177 (183)
T ss_dssp             HHHHHHHH-HTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHT
T ss_pred             HHHHHHHH-HHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence            99999999 89999999997667777766678887765543  4444457888999999999999999999888889988


Q ss_pred             HHHHHh
Q 026011          238 DIQKLV  243 (245)
Q Consensus       238 ~l~~ll  243 (245)
                      .|+++|
T Consensus       178 ~i~~lL  183 (183)
T 2obi_A          178 DLPHYF  183 (183)
T ss_dssp             TSGGGC
T ss_pred             HHHHhC
Confidence            887764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=100.00  E-value=2.4e-33  Score=222.95  Aligned_cols=163  Identities=48%  Similarity=0.841  Sum_probs=142.8

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +.+..+.++|+|+++|.+|++++|++++||+|||+||++||++|+.++|.|++++++|+++|++||+|++|+++.+++++
T Consensus        18 ~~~~~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~   97 (187)
T 3dwv_A           18 KKMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGN   97 (187)
T ss_dssp             --CTTCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSB
T ss_pred             hhhcCCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCC
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999888888889


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccce---eEEEECCCCcEEEecCCCCChHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNF---EKFLVDKNGKVIERYPPTTSPFQIE  236 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P---~~~liD~~G~i~~~~~g~~~~~~l~  236 (245)
                      .+++++|+.++++++||++.+.|.++.....+|+++....++..+  +..+|   ++||||++|+|++++.|..+++++.
T Consensus        98 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~--~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~  175 (187)
T 3dwv_A           98 EEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILA--TKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE  175 (187)
T ss_dssp             TTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBS--SSSCCSTTCEEEECTTSCEEEEECTTCCHHHHH
T ss_pred             HHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccC--CCccccceeEEEECCCCCEEEEECCCCCHHHHH
Confidence            999999994467999999988888888888889887766544433  33346   9999999999999999999999999


Q ss_pred             HHHHHHhh
Q 026011          237 KDIQKLVV  244 (245)
Q Consensus       237 ~~l~~ll~  244 (245)
                      +.|+++|+
T Consensus       176 ~~i~~lL~  183 (187)
T 3dwv_A          176 EKLIPLLG  183 (187)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99999885

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=100.00  E-value=2.2e-32  Score=213.04  Aligned_cols=165  Identities=62%  Similarity=1.109  Sum_probs=137.1

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ...+|..+|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|++++++++++|++||+|++|.+..+++++.
T Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~   84 (170)
T 2p5q_A            5 TSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTN   84 (170)
T ss_dssp             -----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCH
T ss_pred             cCCCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999998777778899


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      +.+++|+.++++++||++.+.|.++.....+|+++.....+..+..+.|+|++||||++|+|++++.|..+++++.+.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~  164 (170)
T 2p5q_A           85 DQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIK  164 (170)
T ss_dssp             HHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHH
Confidence            99999994378999999966676776666777765433222211224444499999999999999999989999999999


Q ss_pred             HHhhC
Q 026011          241 KLVVA  245 (245)
Q Consensus       241 ~ll~~  245 (245)
                      ++|++
T Consensus       165 ~ll~~  169 (170)
T 2p5q_A          165 QLLEI  169 (170)
T ss_dssp             HHTTC
T ss_pred             HHhhc
Confidence            99864

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=100.00  E-value=3.3e-32  Score=214.97  Aligned_cols=158  Identities=42%  Similarity=0.753  Sum_probs=137.5

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      ...|..+|+|+++|.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|++||+|++|++...++++.+
T Consensus        12 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~   91 (180)
T 3kij_A           12 KPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSK   91 (180)
T ss_dssp             CCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHH
T ss_pred             cCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999988888888999


Q ss_pred             HHHHHHHHh-cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          162 EIKEFACTR-FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       162 ~~~~~~~~~-~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      ++++|+ ++ ++++||++.+.+..+......|+++....++.    +.|++++||||++|+|++++.|..+++++.+.|+
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~  166 (180)
T 3kij_A           92 EVESFA-RKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKE----PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIA  166 (180)
T ss_dssp             HHHHHH-HHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCC----CSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHH
T ss_pred             HHHHHH-HHhcCCCCceeeeeeccCccccHHHHHHHhcCCCC----ccccceEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence            999999 66 99999999877777777777787665433221    2223339999999999999999999988888888


Q ss_pred             HHhh
Q 026011          241 KLVV  244 (245)
Q Consensus       241 ~ll~  244 (245)
                      ++|+
T Consensus       167 ~lL~  170 (180)
T 3kij_A          167 ALVR  170 (180)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=100.00  E-value=5.5e-32  Score=215.56  Aligned_cols=166  Identities=50%  Similarity=0.929  Sum_probs=140.2

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ..++.++.+|+|+++|.+|+++++++++||++||+||++||++|+.+++.|++++++|+++|++||+|++|+++.+++++
T Consensus        20 s~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~   99 (190)
T 2vup_A           20 SHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGN   99 (190)
T ss_dssp             ----CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSC
T ss_pred             ccCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999877788889


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCC-ccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD-LVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~-~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      .+++++|+.++++++||++.+.|.++.....+|+++.....+..+. .+.|+|++||||++|+|++++.|..+++++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~  179 (190)
T 2vup_A          100 EEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKK  179 (190)
T ss_dssp             HHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHH
Confidence            9999999845789999999776777776666787665433332222 244555999999999999999999899999999


Q ss_pred             HHHHhhC
Q 026011          239 IQKLVVA  245 (245)
Q Consensus       239 l~~ll~~  245 (245)
                      |+++|++
T Consensus       180 i~~ll~~  186 (190)
T 2vup_A          180 LIPLLES  186 (190)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999863

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.98  E-value=6.7e-32  Score=213.44  Aligned_cols=160  Identities=43%  Similarity=0.798  Sum_probs=131.7

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +.+++|+++|+|+++|.+|+++++++++||++||+||++||++|+.+++.|++++++|+++|++||+|++|++..+++++
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~  100 (181)
T 2p31_A           21 QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDS  100 (181)
T ss_dssp             ------CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSC
T ss_pred             CcCCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999877777788


Q ss_pred             hHHHHHHHHHh-cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          160 NPEIKEFACTR-FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       160 ~~~~~~~~~~~-~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      .+++++|+ ++ ++++||++.+.|.++.....+|++......    ..+.|..++||||++|+|++++.|..+++++.+.
T Consensus       101 ~~~~~~~~-~~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P----~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~  175 (181)
T 2p31_A          101 NKEIESFA-RRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSG----KEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQ  175 (181)
T ss_dssp             HHHHHHHH-HHHHCCCSCBBCCCCCSSTTSCHHHHHHHHHHS----CCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHH
T ss_pred             HHHHHHHH-HhhcCCCceeEeecccCCccchhhhhhhhhcCC----CccccceeEEEEcCCCCEEEEeCCCCCHHHHHHH
Confidence            99999999 66 899999998777777666666664322110    0011112899999999999999998899999999


Q ss_pred             HHHHhh
Q 026011          239 IQKLVV  244 (245)
Q Consensus       239 l~~ll~  244 (245)
                      |+++|+
T Consensus       176 i~~ll~  181 (181)
T 2p31_A          176 ITALVR  181 (181)
T ss_dssp             HHTTCC
T ss_pred             HHHHhC
Confidence            998864

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.8e-31  Score=207.81  Aligned_cols=156  Identities=50%  Similarity=0.892  Sum_probs=120.9

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      .+..+|+|+++|.+|++++|++++||++||+||++||++|+ +++.|++++++|+++|++||+|++|++..+++++.+.+
T Consensus         8 ~~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~   86 (171)
T 3cmi_A            8 HMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEI   86 (171)
T ss_dssp             --CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC----------
T ss_pred             chhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHH
Confidence            46689999999999999999999999999999999999999 99999999999999999999999987766777788899


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccce------eEEEECCCCcEEEecCCCCChHHHHH
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNF------EKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P------~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                      ++|+.++++++||++.|.|.++....++|+++.....+     +.++|      ++||||++|+|++++.|..+++++.+
T Consensus        87 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~-----v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~  161 (171)
T 3cmi_A           87 AQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSG-----MLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSE  161 (171)
T ss_dssp             --------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCC-----SSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHH
T ss_pred             HHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCC-----cCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence            99984678999999988777777778888876543222     33346      99999999999999999889999999


Q ss_pred             HHHHHhhC
Q 026011          238 DIQKLVVA  245 (245)
Q Consensus       238 ~l~~ll~~  245 (245)
                      .|+++|++
T Consensus       162 ~i~~ll~~  169 (171)
T 3cmi_A          162 TIEELLKE  169 (171)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99999864

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.97  E-value=1.4e-30  Score=201.50  Aligned_cols=148  Identities=22%  Similarity=0.273  Sum_probs=115.1

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+++|+++|+|+++|.+|++++|++++||++||+|| ++||++|..+++.|++++++++++|+++++||.|        +
T Consensus         3 ~l~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d--------~   74 (157)
T 4g2e_A            3 MVEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVD--------P   74 (157)
T ss_dssp             CCCTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESS--------C
T ss_pred             cCCCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeeccc--------c
Confidence            367999999999999999999999999999999999 9999999999999999999999999999999988        8


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC-----CCChHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP-----TTSPFQ  234 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g-----~~~~~~  234 (245)
                      .+.+++|+ ++++++||++.|.+   ..+.+.|++..... +..+ .....|++||||++|+|++++.+     ..+.++
T Consensus        75 ~~~~~~~~-~~~~~~~p~l~D~~---~~v~~~ygv~~~~~-~~~~-~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~e  148 (157)
T 4g2e_A           75 PFSNKAFK-EHNKLNFTILSDYN---REVVKKYNVAWEFP-ALPG-YVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDE  148 (157)
T ss_dssp             HHHHHHHH-HHTTCCSEEEECTT---SHHHHHTTCEEECT-TSTT-CEEECEEEEEECTTSBEEEEEEESSTTCCCCHHH
T ss_pred             hhHHHHHH-HHcCCcEEEEEcCC---cHHHHHcCCccccc-cCCC-cceeeeeEEEECCCCEEEEEEECCCCCCCCCHHH
Confidence            89999999 89999999996644   34666676533221 1111 12345999999999999987643     235667


Q ss_pred             HHHHHHHH
Q 026011          235 IEKDIQKL  242 (245)
Q Consensus       235 l~~~l~~l  242 (245)
                      +.+.|+.|
T Consensus       149 il~~l~~L  156 (157)
T 4g2e_A          149 IEKVVKSL  156 (157)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            77777654

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.96  E-value=1e-29  Score=195.74  Aligned_cols=147  Identities=17%  Similarity=0.278  Sum_probs=124.5

Q ss_pred             ccCcccCeEEEcC--CCCeeecCCCCCCEEEEEEecCCCCCChHH-HHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           84 TEKSLYDFTVKDI--DGKDVPLSKFKGKVLLIVNVASRCGLTPSN-YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        84 ~g~~~pdf~l~~~--~G~~v~l~~~~gk~vll~F~~t~C~~C~~~-~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      .|.++|+|+++++  +|+.+++++++||++||+||++||++|+.+ ++.|++++++|+++++++|+|++| +...+.++.
T Consensus         2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~-~~~~~~~~~   80 (158)
T 3eyt_A            2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTV-FEHHEAMTP   80 (158)
T ss_dssp             CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC-CSCGGGSCH
T ss_pred             CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEec-ccccccCCH
Confidence            5789999999994  889999999999999999999999999996 999999999999889999999987 222234689


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCC--CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGP--NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~--~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      +.+++|+ ++++++||++.|.+....  .+.+.|+             +.++|++||||++|+|++++.|..+.+++.+.
T Consensus        81 ~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~  146 (158)
T 3eyt_A           81 ISLKAFL-HEYRIKFPVGVDQPGDGAMPRTMAAYQ-------------MRGTPSLLLIDKAGDLRAHHFGDVSELLLGAE  146 (158)
T ss_dssp             HHHHHHH-HHTTCCSCEEEECCCSSSSCHHHHHTT-------------CCSSSEEEEECTTSEEEEEEESCCCHHHHHHH
T ss_pred             HHHHHHH-HHcCCCceEEEcCccchhhHHHHHHcC-------------CCCCCEEEEECCCCCEEEEEeCCCCHHHHHHH
Confidence            9999999 899999999965442110  1233333             56679999999999999999999999999999


Q ss_pred             HHHHhhC
Q 026011          239 IQKLVVA  245 (245)
Q Consensus       239 l~~ll~~  245 (245)
                      |+++|++
T Consensus       147 i~~ll~~  153 (158)
T 3eyt_A          147 IATLLGE  153 (158)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcc
Confidence            9999863

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.96  E-value=4.1e-31  Score=205.95  Aligned_cols=149  Identities=15%  Similarity=0.235  Sum_probs=124.1

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCC--CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKF--KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~--~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      .+++|+++|+|+++|.+|++++|+++  +||++||+|| ++|||+|..+++.|++++++|+++|+++++||.|       
T Consensus         4 ml~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d-------   76 (164)
T 4gqc_A            4 LVELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD-------   76 (164)
T ss_dssp             CCCTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESS-------
T ss_pred             cccCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCC-------
Confidence            36799999999999999999999998  8999888888 9999999999999999999999999999999988       


Q ss_pred             CChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-----CCh
Q 026011          158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-----TSP  232 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-----~~~  232 (245)
                       +.+.+++|+ ++++++||++.|.+   ..+.+.|+++....++..   ....|++||||++|+|++++.+.     .+.
T Consensus        77 -~~~~~~~~~-~~~~~~fp~l~D~~---~~v~~~ygv~~~~~~~~~---~~~~p~tflID~~G~I~~~~~~~~~~~~~~~  148 (164)
T 4gqc_A           77 -SPWCLKKFK-DENRLAFNLLSDYN---REVIKLYNVYHEDLKGLK---MVAKRAVFIVKPDGTVAYKWVTDNPLNEPDY  148 (164)
T ss_dssp             -CHHHHHHHH-HHTTCCSEEEECTT---SHHHHHTTCEEEEETTEE---EEECCEEEEECTTSBEEEEEECSCTTCCCCH
T ss_pred             -CHHHHHHHH-HhcCcccceeecCc---hHHHHHcCCcccccccCc---CCeeeEEEEECCCCEEEEEEEeCCCCCCCCH
Confidence             889999999 89999999997644   446777876544332221   22348999999999999886432     356


Q ss_pred             HHHHHHHHHHhh
Q 026011          233 FQIEKDIQKLVV  244 (245)
Q Consensus       233 ~~l~~~l~~ll~  244 (245)
                      +++.+.|++++.
T Consensus       149 ~eil~~l~~l~~  160 (164)
T 4gqc_A          149 DEVVREANKIAG  160 (164)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            788888888764

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.96  E-value=2.3e-29  Score=193.99  Aligned_cols=150  Identities=12%  Similarity=0.244  Sum_probs=127.3

Q ss_pred             ccCcccCeEEEc-CCCCeeecCCCCCCEEEEEEecCCCCCChHH-HHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           84 TEKSLYDFTVKD-IDGKDVPLSKFKGKVLLIVNVASRCGLTPSN-YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        84 ~g~~~pdf~l~~-~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~-~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      .|.++|+|++.+ .+|+.+++++++||++||+||++||++|..+ ++.|++++++|+++|+++|+|++| +...+.++.+
T Consensus         5 ~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~-~~~~~~~~~~   83 (160)
T 3lor_A            5 DNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSV-FEHHDVMTPE   83 (160)
T ss_dssp             TTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC-CSCGGGSCHH
T ss_pred             CCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEecc-ccccccCCHH
Confidence            688999999999 8999999999999999999999999999995 999999999999999999999996 3333346899


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                      .+++|+ ++++++||++.|.+.....+..+.+.++          +.++|++||||++|+|++++.|..+.+++.+.|++
T Consensus        84 ~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  152 (160)
T 3lor_A           84 ALKVFI-DEFGIKFPVAVDMPREGQRIPSTMKKYR----------LEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGS  152 (160)
T ss_dssp             HHHHHH-HHTTCCSCEEEECCCTTCSSCHHHHHTT----------CCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHHHH-HHcCCCCcEEECCccccchhhhHHHhcc----------cCccceEEEECCCCcEEEEecCcCCHHHHHHHHHH
Confidence            999999 8999999999765533222222333221          56679999999999999999999999999999999


Q ss_pred             HhhC
Q 026011          242 LVVA  245 (245)
Q Consensus       242 ll~~  245 (245)
                      +|++
T Consensus       153 ll~~  156 (160)
T 3lor_A          153 LLSE  156 (160)
T ss_dssp             HHTC
T ss_pred             HHhc
Confidence            9864

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=4.4e-29  Score=190.86  Aligned_cols=141  Identities=22%  Similarity=0.261  Sum_probs=121.9

Q ss_pred             ccccccCcccCeEEEcCCCCeeecC--CCCCCEEEEEEecCCCCC--ChHHHHHHHHHHHHh-hhCCcEEEEEecCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLS--KFKGKVLLIVNVASRCGL--TPSNYSELSHLYEKY-KTQGFEILAFPCNQFGG  154 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~--~~~gk~vll~F~~t~C~~--C~~~~~~l~~l~~~~-~~~g~~vv~Vs~D~~~~  154 (245)
                      +.+++|+++|+|+++|.+|+.++|+  +++||++||+||++||++  |+.+++.|++++++| +++|+++|+|++|    
T Consensus         3 ~~l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d----   78 (150)
T 3fw2_A            3 AKSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLD----   78 (150)
T ss_dssp             CTTSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECC----
T ss_pred             ccccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcC----
Confidence            3467999999999999999999999  999999999999999999  999999999999999 8888999999998    


Q ss_pred             CCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHH
Q 026011          155 QEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ  234 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~  234 (245)
                         ++.+.+++|+ ++++++||++.|.......+.+.|+             +.++|++||||++|+|++++.   +.++
T Consensus        79 ---~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~---~~~~  138 (150)
T 3fw2_A           79 ---VDKQQWKDAI-KRDTLDWEQVCDFGGLNSEVAKQYS-------------IYKIPANILLSSDGKILAKNL---RGEE  138 (150)
T ss_dssp             ---SCHHHHHHHH-HHTTCCSEEECCSCGGGCHHHHHTT-------------CCSSSEEEEECTTSBEEEESC---CHHH
T ss_pred             ---CCHHHHHHHH-HHhCCCceEEEcCcccchHHHHHcC-------------CCccCeEEEECCCCEEEEccC---CHHH
Confidence               3678999999 8999999999553211223334443             566799999999999999986   7889


Q ss_pred             HHHHHHHHhh
Q 026011          235 IEKDIQKLVV  244 (245)
Q Consensus       235 l~~~l~~ll~  244 (245)
                      +++.|+++++
T Consensus       139 l~~~l~~ll~  148 (150)
T 3fw2_A          139 LKKKIENIVE  148 (150)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999885

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.96  E-value=7.6e-29  Score=194.18  Aligned_cols=155  Identities=21%  Similarity=0.352  Sum_probs=121.6

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+|.++|+|+|+|.+|++++|++++||++||+||++||+ +|+.+++.|.++++++++.|  +++|+||+|    ++.|+
T Consensus         7 P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD----p~~Dt   82 (170)
T 4hde_A            7 PLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD----PDLDK   82 (170)
T ss_dssp             CCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC----TTTCC
T ss_pred             CCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC----ccccc
Confidence            478899999999999999999999999999999999998 89999999999999997654  889999999    67789


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhh----hhcccCCCCCCccccceeEEEECCCCcEEEecCCC--CChH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQF----LKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--TSPF  233 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~----~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~--~~~~  233 (245)
                      ++.+++|+ ++++..++.+...  .+.....+.+.    +.........+.+.|.|++||||++|+|+..|.|.  .+.+
T Consensus        83 p~~l~~y~-~~~~~~~~~~~~l--tg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~  159 (170)
T 4hde_A           83 PENLKAFI-QKFTEDTSNWNLL--TGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYE  159 (170)
T ss_dssp             HHHHHHHH-TTTCSCCTTEEEE--BCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHH
T ss_pred             HHHHHHHH-HHcCCCCCCceec--CcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHH
Confidence            99999999 8888776644221  11212222221    11111222335588999999999999999888764  3568


Q ss_pred             HHHHHHHHHhh
Q 026011          234 QIEKDIQKLVV  244 (245)
Q Consensus       234 ~l~~~l~~ll~  244 (245)
                      ++.++|++|++
T Consensus       160 ~l~~~ik~Lle  170 (170)
T 4hde_A          160 DIIRDMKRLAE  170 (170)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            89999998874

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.96  E-value=3.1e-28  Score=192.23  Aligned_cols=145  Identities=17%  Similarity=0.208  Sum_probs=125.3

Q ss_pred             cccccCcccCeEEEcC--CCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCc------EEEEEecCCC
Q 026011           81 TAATEKSLYDFTVKDI--DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF------EILAFPCNQF  152 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~--~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~------~vv~Vs~D~~  152 (245)
                      ....|.++|+|+++++  +|+.++|++++||++||+||++||++|+.+++.|++++++|+++|+      +|++|++|  
T Consensus        30 ~~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d--  107 (183)
T 3lwa_A           30 DEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVR--  107 (183)
T ss_dssp             CGGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECS--
T ss_pred             ccccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECC--
Confidence            4568999999999999  9999999999999999999999999999999999999999999999      99999998  


Q ss_pred             CCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCCh
Q 026011          153 GGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSP  232 (245)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~  232 (245)
                          .++.+.+++|+ ++++++||++.|.+   ..+...|+          .+.+.++|++||||++|+|++++.|..+.
T Consensus       108 ----~~~~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~----------~~~v~~~P~~~lid~~G~i~~~~~g~~~~  169 (183)
T 3lwa_A          108 ----DYSRDIAQDFV-TDNGLDYPSIYDPP---FMTAASLG----------GVPASVIPTTIVLDKQHRPAAVFLREVTS  169 (183)
T ss_dssp             ----CCCHHHHHHHH-HHTTCCSCEEECTT---CGGGGGTT----------TCCTTCCSEEEEECTTSCEEEEECSCCCH
T ss_pred             ----CCCHHHHHHHH-HHcCCCccEEECCc---chHHHHhc----------cCCCCCCCeEEEECCCCcEEEEEcCCCCH
Confidence                22688999999 89999999995533   22333333          12266679999999999999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 026011          233 FQIEKDIQKLVVA  245 (245)
Q Consensus       233 ~~l~~~l~~ll~~  245 (245)
                      +++.+.|+++|++
T Consensus       170 ~~l~~~l~~ll~~  182 (183)
T 3lwa_A          170 KDVLDVALPLVDE  182 (183)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999864

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.96  E-value=2.8e-29  Score=190.48  Aligned_cols=137  Identities=11%  Similarity=0.136  Sum_probs=109.9

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ..+.+|+.+|+|++ +.+|+.++|++++||++||+||++||++|+.+++.|++++++|+++|++||+|++|.       +
T Consensus         5 ~~l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~-------~   76 (143)
T 4fo5_A            5 EGVNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDE-------K   76 (143)
T ss_dssp             BSSSTTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCS-------C
T ss_pred             cccCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccC-------C
Confidence            34679999999999 999999999999999999999999999999999999999999998899999999983       6


Q ss_pred             hHHHHHHHHHhcCCCc-ceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          160 NPEIKEFACTRFKAEF-PIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~-p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      .+.+++++ ++++++| +.+.|.+.....+.+.|+             +.++|++||||++|+|++++.   ..+++++.
T Consensus        77 ~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~---~~~~l~~~  139 (143)
T 4fo5_A           77 ESIFTETV-KIDKLDLSTQFHEGLGKESELYKKYD-------------LRKGFKNFLINDEGVIIAANV---TPEKLTEI  139 (143)
T ss_dssp             HHHHHHHH-HHHTCCGGGEEECTTGGGSHHHHHTT-------------GGGCCCEEEECTTSBEEEESC---CHHHHHHH
T ss_pred             HHHHHHHH-HHhCCCCceeeecccccchHHHHHcC-------------CCCCCcEEEECCCCEEEEccC---CHHHHHHH
Confidence            78899999 8889999 777543221222334443             666799999999999999876   46777776


Q ss_pred             HHH
Q 026011          239 IQK  241 (245)
Q Consensus       239 l~~  241 (245)
                      |++
T Consensus       140 l~~  142 (143)
T 4fo5_A          140 LKA  142 (143)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.96  E-value=3.1e-28  Score=190.30  Aligned_cols=157  Identities=22%  Similarity=0.354  Sum_probs=124.9

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEP  157 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~  157 (245)
                      .+.+|..+|+|+++|.+|+.++|++++||++||+||++||+ +|+.+++.|++++++++++|  ++||+|++|    ++.
T Consensus         6 ~l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d----~~~   81 (174)
T 1xzo_A            6 KDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD----PEN   81 (174)
T ss_dssp             CSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC----TTT
T ss_pred             cCccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeC----CCC
Confidence            45689999999999999999999999999999999999999 99999999999999999886  999999998    344


Q ss_pred             CChHHHHHHHHHhcCCCc---ceeeccCCCCCCcchhhhh--hhcccC-CCCCCccccceeEEEECCCCcEEEecCCCC-
Q 026011          158 GSNPEIKEFACTRFKAEF---PIFDKVDVNGPNTAPVYQF--LKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPPTT-  230 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~---p~~~d~d~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~P~~~liD~~G~i~~~~~g~~-  230 (245)
                      ++.+.+++|+ ++++++|   +++.|.+   ....+.|+.  +....+ ....+.+.++|++||||++|+|++++.|.. 
T Consensus        82 d~~~~~~~~~-~~~~~~~~~~~~l~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~  157 (174)
T 1xzo_A           82 DKPKQLKKFA-ANYPLSFDNWDFLTGYS---QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN  157 (174)
T ss_dssp             CCHHHHHHHH-TTSCCCGGGEEEEBCSC---HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS
T ss_pred             CCHHHHHHHH-HHcCCCCcceEEEeCCC---HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCC
Confidence            6889999999 8999998   6664322   112233321  000000 011234677899999999999999998875 


Q ss_pred             -ChHHHHHHHHHHhhC
Q 026011          231 -SPFQIEKDIQKLVVA  245 (245)
Q Consensus       231 -~~~~l~~~l~~ll~~  245 (245)
                       +.+++.+.|++++++
T Consensus       158 ~~~~~l~~~l~~ll~~  173 (174)
T 1xzo_A          158 TPYDDIISDVKSASTL  173 (174)
T ss_dssp             CCHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhc
Confidence             478999999999863

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.96  E-value=2.1e-28  Score=185.06  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=114.1

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHH---HHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSH---LYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~---l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ++|+++|+|++++.+|+.+++++++||++||+||++||++|+.+++.|.+   ++++++++|+++++|++|       ++
T Consensus         2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d-------~~   74 (142)
T 3ewl_A            2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPD-------EN   74 (142)
T ss_dssp             CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECS-------SC
T ss_pred             CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEec-------CC
Confidence            47999999999999999999999999999999999999999999999998   999999989999999998       37


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcch--hhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAP--VYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEK  237 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~--~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~  237 (245)
                      .+.+++|+ ++++++||++.|.+  +. ...  .|+             |.++|++||||++|+|+++.   .+.+++++
T Consensus        75 ~~~~~~~~-~~~~~~~~~~~d~~--~~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~---~~~~~l~~  134 (142)
T 3ewl_A           75 REEWATKA-VYMPQGWIVGWNKA--GD-IRTRQLYD-------------IRATPTIYLLDGRKRVILKD---TSMEQLID  134 (142)
T ss_dssp             HHHHHHHH-TTSCTTCEEEECTT--CH-HHHTTCSC-------------CCSSSEEEEECTTCBEEECS---CCHHHHHH
T ss_pred             HHHHHHHH-HHcCCCcceeeCCc--cc-hhhHHHcC-------------CCCCCeEEEECCCCCEEecC---CCHHHHHH
Confidence            88899998 89999999995433  21 111  222             67779999999999998843   47889999


Q ss_pred             HHHHHhh
Q 026011          238 DIQKLVV  244 (245)
Q Consensus       238 ~l~~ll~  244 (245)
                      .|+++++
T Consensus       135 ~l~~~~~  141 (142)
T 3ewl_A          135 YLATQAG  141 (142)
T ss_dssp             HHHC---
T ss_pred             HHHHHcc
Confidence            9887764

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.96  E-value=2.2e-28  Score=198.99  Aligned_cols=148  Identities=16%  Similarity=0.284  Sum_probs=126.4

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCC-EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ..+++|+++|+|+++|.+|++++|++++|| ++||+||++||++|+.+++.|++++++|+++|++||+|++|+....+.+
T Consensus        30 ~~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d  109 (218)
T 3u5r_E           30 NSITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEE  109 (218)
T ss_dssp             CCCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGG
T ss_pred             CcCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccC
Confidence            346799999999999999999999999999 5999999999999999999999999999999999999999865544457


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC---------CC
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP---------PT  229 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~---------g~  229 (245)
                      +.+.+++|+ ++++++||++.|.+   ..+.+.|+             +.++|++||||++|+|+++..         +.
T Consensus       110 ~~~~~~~~~-~~~~~~~~~l~D~~---~~~~~~~~-------------v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~  172 (218)
T 3u5r_E          110 TLERVGAEV-KAYGYGFPYLKDAS---QSVAKAYG-------------AACTPDFFLYDRERRLVYHGQFDDARPGNGKD  172 (218)
T ss_dssp             SHHHHHHHH-HHHTCCSCEEECTT---CHHHHHHT-------------CCEESEEEEECTTCBEEEEECSSSCCTTSCCC
T ss_pred             CHHHHHHHH-HHhCCCccEEECCc---cHHHHHcC-------------CCCCCeEEEECCCCcEEEeccccccccccccc
Confidence            999999999 88999999996532   33555555             566799999999999998742         23


Q ss_pred             CChHHHHHHHHHHhh
Q 026011          230 TSPFQIEKDIQKLVV  244 (245)
Q Consensus       230 ~~~~~l~~~l~~ll~  244 (245)
                      .+.+++++.|+++++
T Consensus       173 ~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          173 VTGADLRAAVDAVLK  187 (218)
T ss_dssp             CCCHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHc
Confidence            457899999999875

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.96  E-value=6.3e-28  Score=183.14  Aligned_cols=142  Identities=20%  Similarity=0.277  Sum_probs=120.2

Q ss_pred             ccccccCcccCeEEEcCCCCeeecC--CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHh-hhCCcEEEEEecCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLS--KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY-KTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~--~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~-~~~g~~vv~Vs~D~~~~~~  156 (245)
                      ..+.+|+++|+|++++.+|+.++++  +++||++||+||++||++|+.+++.|.++++++ +++|+.+++|++|.     
T Consensus         3 ~~~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~-----   77 (148)
T 3fkf_A            3 AKVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDI-----   77 (148)
T ss_dssp             --CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCS-----
T ss_pred             ccccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCC-----
Confidence            4567999999999999999999999  999999999999999999999999999999999 88889999999983     


Q ss_pred             CCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011          157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE  236 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~  236 (245)
                        +.+.+++++ ++++++|+++.|.......+...|+             +.++|+++|||++|+|++++.   +.+++.
T Consensus        78 --~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~---~~~~l~  138 (148)
T 3fkf_A           78 --DREAWETAI-KKDTLSWDQVCDFTGLSSETAKQYA-------------ILTLPTNILLSPTGKILARDI---QGEALT  138 (148)
T ss_dssp             --CHHHHHHHH-HHTTCCSEEECCSCGGGCHHHHHTT-------------CCSSSEEEEECTTSBEEEESC---CHHHHH
T ss_pred             --CHHHHHHHH-HHcCCCceEEEccCCcchHHHHhcC-------------CCCcCEEEEECCCCeEEEecC---CHHHHH
Confidence              678899999 8999999998553211223333343             667799999999999999987   788999


Q ss_pred             HHHHHHhhC
Q 026011          237 KDIQKLVVA  245 (245)
Q Consensus       237 ~~l~~ll~~  245 (245)
                      +.|+++|++
T Consensus       139 ~~l~~ll~~  147 (148)
T 3fkf_A          139 GKLKELLKT  147 (148)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHcc
Confidence            999998853

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.96  E-value=2e-28  Score=189.79  Aligned_cols=128  Identities=15%  Similarity=0.210  Sum_probs=110.3

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCE-EEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKV-LLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~-vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +.+|+++|+|+++|.+|+.+++++++||+ +||+|| ++||++|+.+++.|++++++|+++|++||+|++|        +
T Consensus         2 l~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d--------~   73 (161)
T 3drn_A            2 VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSD--------D   73 (161)
T ss_dssp             CCTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESC--------C
T ss_pred             CCCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCC--------C
Confidence            46899999999999999999999999997 999999 9999999999999999999999999999999988        7


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                      .+.+++|+ ++++++||++.|.+   ..+.+.|+...         ...++|++||||++|+|++++.|..
T Consensus        74 ~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~v~~---------~~~~~P~~~lid~~G~i~~~~~g~~  131 (161)
T 3drn_A           74 INSHKRFK-EKYKLPFILVSDPD---KKIRELYGAKG---------FILPARITFVIDKKGIIRHIYNSQM  131 (161)
T ss_dssp             HHHHHHHH-HHTTCCSEEEECTT---SHHHHHTTCCC---------SSSCCCEEEEECTTSBEEEEEECSS
T ss_pred             HHHHHHHH-HHhCCCceEEECCc---HHHHHHcCCCC---------cCcccceEEEECCCCEEEEEEecCC
Confidence            89999999 88999999996532   33455555321         0223699999999999999998843

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.95  E-value=2.6e-28  Score=189.14  Aligned_cols=152  Identities=14%  Similarity=0.220  Sum_probs=121.0

Q ss_pred             ccccccCcccCeE--EEcCCCCeeecCCCCCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           80 ATAATEKSLYDFT--VKDIDGKDVPLSKFKGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        80 ~~~~~g~~~pdf~--l~~~~G~~v~l~~~~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      ..+.+|+++|+|+  ++|.+|+++++++++||++||+||+ +||++|+.+++.|++++++|+++|++||+|++|      
T Consensus         5 ~~l~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d------   78 (163)
T 3gkn_A            5 TDAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD------   78 (163)
T ss_dssp             CCCCCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS------
T ss_pred             cccccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC------
Confidence            3467999999999  9999999999999999999999997 999999999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC---hH
Q 026011          157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS---PF  233 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~---~~  233 (245)
                        +.+.+++|+ ++++++||++.|.+   ..+.+.|+....... .......++|++||||++|+|++.+.+...   .+
T Consensus        79 --~~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~v~~~~~~-~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~  151 (163)
T 3gkn_A           79 --SVKSHDNFC-AKQGFAFPLVSDGD---EALCRAFDVIKEKNM-YGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHAD  151 (163)
T ss_dssp             --CHHHHHHHH-HHHCCSSCEEECTT---CHHHHHTTCEEEEEE-TTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHH
T ss_pred             --CHHHHHHHH-HHhCCCceEEECCc---HHHHHHhCCcccccc-ccccccCcceEEEEECCCCeEEEEEcCCCcccCHH
Confidence              899999999 78999999996533   345566664332110 000111226999999999999998865443   34


Q ss_pred             HHHHHHHHHhh
Q 026011          234 QIEKDIQKLVV  244 (245)
Q Consensus       234 ~l~~~l~~ll~  244 (245)
                      ++.+.|+++++
T Consensus       152 ~il~~l~~l~~  162 (163)
T 3gkn_A          152 AVLAALKAHAK  162 (163)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhc
Confidence            56666666544

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.95  E-value=4e-28  Score=185.50  Aligned_cols=137  Identities=23%  Similarity=0.396  Sum_probs=121.8

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      +|+.+|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++++++|++|       ++.+.+
T Consensus         2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d-------~~~~~~   74 (151)
T 2f9s_A            2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVG-------ESKIAV   74 (151)
T ss_dssp             CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEES-------CCHHHH
T ss_pred             CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECC-------CCHHHH
Confidence            6889999999999999999999999999999999999999999999999999999888999999998       367889


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      ++|+ ++++++||++.|.+   ..+.+.|+             |.++|++||||++|+++.++.|..+.+++.+.|++++
T Consensus        75 ~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll  137 (151)
T 2f9s_A           75 HNFM-KSYGVNFPVVLDTD---RQVLDAYD-------------VSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK  137 (151)
T ss_dssp             HHHH-HHHTCCSCEEEETT---SHHHHHTT-------------CCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             HHHH-HHcCCCceEEECCc---hHHHHhcC-------------CCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            9998 88899999996532   22333343             6667999999999999999999989999999999987


Q ss_pred             h
Q 026011          244 V  244 (245)
Q Consensus       244 ~  244 (245)
                      +
T Consensus       138 ~  138 (151)
T 2f9s_A          138 P  138 (151)
T ss_dssp             C
T ss_pred             h
Confidence            5

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.95  E-value=3.4e-28  Score=186.32  Aligned_cols=139  Identities=21%  Similarity=0.240  Sum_probs=117.9

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      +.+|..+|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|++++++++++|+++++|++|       ++.+
T Consensus         3 l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d-------~~~~   75 (152)
T 2lrn_A            3 LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTD-------RREE   75 (152)
T ss_dssp             SCTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECC-------SCHH
T ss_pred             ccCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEcc-------CCHH
Confidence            458999999999999999999999999999999999999999999999999999999989999999998       3678


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                      .+++|+ ++++++||++.|.......+.+.|+             |..+|++||||++|+|++++.   +.+++++.|++
T Consensus        76 ~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~  138 (152)
T 2lrn_A           76 DWKKAI-EEDKSYWNQVLLQKDDVKDVLESYC-------------IVGFPHIILVDPEGKIVAKEL---RGDDLYNTVEK  138 (152)
T ss_dssp             HHHHHH-HHHTCCSEEEEECHHHHHHHHHHTT-------------CCSSCEEEEECTTSEEEEECC---CTTHHHHHHHH
T ss_pred             HHHHHH-HHhCCCCeEEecccchhHHHHHHhC-------------CCcCCeEEEECCCCeEEEeeC---CHHHHHHHHHH
Confidence            899998 7889999998653100112223332             566799999999999999985   56789999998


Q ss_pred             Hhh
Q 026011          242 LVV  244 (245)
Q Consensus       242 ll~  244 (245)
                      +++
T Consensus       139 l~~  141 (152)
T 2lrn_A          139 FVN  141 (152)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            875

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.95  E-value=6.1e-28  Score=182.83  Aligned_cols=134  Identities=15%  Similarity=0.147  Sum_probs=112.1

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHH---HHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSH---LYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~---l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      +..+|.++|+|++++.+|+.++|++++||++||+||++||++|+.++|.|++   +++++++++++||+|+.|       
T Consensus         4 ~~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d-------   76 (142)
T 3eur_A            4 KNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPD-------   76 (142)
T ss_dssp             TTCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECS-------
T ss_pred             hhcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcC-------
Confidence            4568999999999999999999999999999999999999999999999999   999999889999999998       


Q ss_pred             CChHHHHHHHHHhcCCCcceeeccCCCCC-CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHH
Q 026011          158 GSNPEIKEFACTRFKAEFPIFDKVDVNGP-NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE  236 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~p~~~d~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~  236 (245)
                      +..+.+++++ ++++.+|+.+.|.+  +. .....|+             |.++|++||||++|+|+++..   ..++++
T Consensus        77 ~~~~~~~~~~-~~~~~~~~~~~d~~--~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~---~~~~l~  137 (142)
T 3eur_A           77 EELDEWKKHR-NDFAKEWTNGYDKE--LVIKNKNLYD-------------LRAIPTLYLLDKNKTVLLKDA---TLQKVE  137 (142)
T ss_dssp             SCHHHHHHHG-GGSCTTSEEEECTT--CHHHHTTCSC-------------CTTCSEEEEECTTCBEEEEEE---CHHHHH
T ss_pred             CCHHHHHHHH-HhcccccccccCcc--chhhhhhhcC-------------CCcCCeEEEECCCCcEEecCC---CHHHHH
Confidence            3678888998 78888888875432  11 0122222             667799999999999999886   356676


Q ss_pred             HHHH
Q 026011          237 KDIQ  240 (245)
Q Consensus       237 ~~l~  240 (245)
                      +.|+
T Consensus       138 ~~l~  141 (142)
T 3eur_A          138 QYLA  141 (142)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6664

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.95  E-value=2.7e-28  Score=192.48  Aligned_cols=152  Identities=11%  Similarity=0.181  Sum_probs=120.2

Q ss_pred             ccccccCc----ccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCC
Q 026011           80 ATAATEKS----LYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG  154 (245)
Q Consensus        80 ~~~~~g~~----~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~  154 (245)
                      ..+++|+.    +|+|+++|.+|++++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|+.|    
T Consensus        19 ~~l~~Gd~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D----   94 (179)
T 3ixr_A           19 SHMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRD----   94 (179)
T ss_dssp             CSSCTTCBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESC----
T ss_pred             cccCcCcccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC----
Confidence            34556666    99999999999999999999999999998 9999999999999999999999999999999988    


Q ss_pred             CCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC---
Q 026011          155 QEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS---  231 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~---  231 (245)
                          +.+.+++|+ ++++++||++.|.+   ..+.+.|+....... .......+.|++||||++|+|++.+.+...   
T Consensus        95 ----~~~~~~~~~-~~~~~~f~~l~D~~---~~~~~~~gv~~~~~~-~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~  165 (179)
T 3ixr_A           95 ----SVKSHDSFC-AKQGFTFPLVSDSD---AILCKAFDVIKEKTM-YGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGH  165 (179)
T ss_dssp             ----CHHHHHHHH-HHHTCCSCEEECTT---CHHHHHTTCEEEECC-C--CEEEECCEEEEECTTSBEEEEECSCCSTTH
T ss_pred             ----CHHHHHHHH-HHcCCceEEEECCc---hHHHHHcCCcccccc-cCcccCCcceEEEEECCCCEEEEEEcCCCCCCC
Confidence                789999999 78999999996533   345666765432211 111112346999999999999998855433   


Q ss_pred             hHHHHHHHHHHhh
Q 026011          232 PFQIEKDIQKLVV  244 (245)
Q Consensus       232 ~~~l~~~l~~ll~  244 (245)
                      .+++.+.|+++.+
T Consensus       166 ~~~il~~l~~l~~  178 (179)
T 3ixr_A          166 AEEVLNKLKAHAE  178 (179)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            3466666666654

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.95  E-value=1.5e-27  Score=184.63  Aligned_cols=146  Identities=16%  Similarity=0.261  Sum_probs=124.9

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ...+|.++|+|++++.+|+.+++++++||++||+||++||++|+.+++.|++++++++++|+.+++|++|       ++.
T Consensus         7 ~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d-------~~~   79 (165)
T 3or5_A            7 ADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVN-------EQL   79 (165)
T ss_dssp             CCCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECS-------CCH
T ss_pred             hhcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECC-------CCH
Confidence            3568999999999999999999999999999999999999999999999999999999989999999998       368


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      +.+++|+ ++++++||++.+.+    ...+.|+.+.       ...+.++|++||||++|+|+.++.|..+.+++.+.|+
T Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  147 (165)
T 3or5_A           80 PNVKNYM-KTQGIIYPVMMATP----ELIRAFNGYI-------DGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVK  147 (165)
T ss_dssp             HHHHHHH-HHHTCCSCEEECCH----HHHHHHHTTS-------TTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCCceEecCH----HHHHHHhhhh-------ccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHH
Confidence            8899998 88999999985421    2333443211       1126667999999999999999999999999999999


Q ss_pred             HHhhC
Q 026011          241 KLVVA  245 (245)
Q Consensus       241 ~ll~~  245 (245)
                      ++|++
T Consensus       148 ~~l~~  152 (165)
T 3or5_A          148 MALGA  152 (165)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            99863

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.95  E-value=1.5e-27  Score=181.07  Aligned_cols=143  Identities=15%  Similarity=0.149  Sum_probs=120.8

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ..+.+|.++|+|++++.+|+.+++++++||++||+||++||++|+.+++.|++++++++++|+++++|++|       ++
T Consensus         3 ~~~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d-------~~   75 (148)
T 3hcz_A            3 APLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIE-------RK   75 (148)
T ss_dssp             CCCCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECC-------SS
T ss_pred             CccCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEec-------CC
Confidence            34678999999999999999999999999999999999999999999999999999999989999999998       36


Q ss_pred             hHHHHHHHHHhcCCC-cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      .+.+++|+ ++++++ |+++.|.+.. ..+...|+             +.++|+++|||++|+|++++.|..+.+++.+.
T Consensus        76 ~~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~~~-------------i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~  140 (148)
T 3hcz_A           76 DEEWLKFI-RSKKIGGWLNVRDSKNH-TDFKITYD-------------IYATPVLYVLDKNKVIIAKRIGYENLDDFLVQ  140 (148)
T ss_dssp             SHHHHHHH-HHHTCTTSEEEECTTCC-CCHHHHHC-------------CCSSCEEEEECTTCBEEEESCCGGGHHHHHHH
T ss_pred             HHHHHHHH-HHcCCCCceEEeccccc-hhHHHhcC-------------cCCCCEEEEECCCCcEEEecCCHHHHHHHHHH
Confidence            77899999 788888 9998654321 11444444             56679999999999999999987666667776


Q ss_pred             HHHHhh
Q 026011          239 IQKLVV  244 (245)
Q Consensus       239 l~~ll~  244 (245)
                      +.++++
T Consensus       141 l~~~l~  146 (148)
T 3hcz_A          141 YEKSLK  146 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666653

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.95  E-value=1.6e-27  Score=182.29  Aligned_cols=139  Identities=18%  Similarity=0.304  Sum_probs=122.8

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      .+|+.+|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|+.|      .++.+.
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~------~~~~~~   76 (153)
T 2l5o_A            3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQP------IDPIES   76 (153)
T ss_dssp             -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECT------TSCHHH
T ss_pred             CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecC------CCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999989999999976      458899


Q ss_pred             HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      +++|+ ++++++|+++.|.+   ..+.+.|+             |.++|++||||++|+++.++.|..+.+++.+.|+++
T Consensus        77 ~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  139 (153)
T 2l5o_A           77 VRQYV-KDYGLPFTVMYDAD---KAVGQAFG-------------TQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA  139 (153)
T ss_dssp             HHHHH-HHTTCCSEEEECSS---CHHHHHHT-------------CCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHH
T ss_pred             HHHHH-HHcCCCceEEcCch---HHHHHHcC-------------CCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            99999 88999999985432   23344443             566799999999999999999998999999999999


Q ss_pred             hh
Q 026011          243 VV  244 (245)
Q Consensus       243 l~  244 (245)
                      |+
T Consensus       140 l~  141 (153)
T 2l5o_A          140 WR  141 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.95  E-value=9.8e-28  Score=185.55  Aligned_cols=154  Identities=13%  Similarity=0.195  Sum_probs=121.1

Q ss_pred             cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCC-ChHHHHHHHHHHHHhhh----CCcEEEEEecCCCCCCCCCChH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKT----QGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~-C~~~~~~l~~l~~~~~~----~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      .+|+|+++|.+|+++++++++||++||+||++||++ |+.+++.|+++++++++    .++++|+|++|    ++.++.+
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d----~~~d~~~   77 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID----PERDTKE   77 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESC----TTTCCHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeC----CCCCCHH
Confidence            579999999999999999999999999999999998 99999999999999987    47999999998    4456789


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcc--cCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSS--AGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~--~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                      .+++|+ ++++.+|+++.+.......+.+.|++....  ......+.+.|.+++||||++|+|++++.|..+++++.+.|
T Consensus        78 ~~~~~~-~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l  156 (164)
T 2ggt_A           78 AIANYV-KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASI  156 (164)
T ss_dssp             HHHHHH-HTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHH
T ss_pred             HHHHHH-HHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHH
Confidence            999999 889999998732100011123334321111  00111223556669999999999999999988999999999


Q ss_pred             HHHhhC
Q 026011          240 QKLVVA  245 (245)
Q Consensus       240 ~~ll~~  245 (245)
                      +++|++
T Consensus       157 ~~ll~~  162 (164)
T 2ggt_A          157 ATHMRP  162 (164)
T ss_dssp             HHHHGG
T ss_pred             HHHHHh
Confidence            999863

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.95  E-value=1.2e-27  Score=190.61  Aligned_cols=147  Identities=20%  Similarity=0.272  Sum_probs=125.8

Q ss_pred             cccccCcccCeEEE-cCCCCeeecCCCCCC-EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVK-DIDGKDVPLSKFKGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        81 ~~~~g~~~pdf~l~-~~~G~~v~l~~~~gk-~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+.+|+.+|+|+++ +.+|+.+++++++|| ++||+||++||++|+.+++.|++++++|+++++++++|++|.......+
T Consensus        17 ~~~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d   96 (196)
T 2ywi_A           17 MFPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPED   96 (196)
T ss_dssp             CCCTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGG
T ss_pred             CCCcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccc
Confidence            35689999999999 999999999999998 5999999999999999999999999999998999999999854333346


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe---------cCCC
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER---------YPPT  229 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~---------~~g~  229 (245)
                      +.+.+++|+ ++++++||++.|.+   ..+.+.|+             +.++|++||||++|+|+++         +.|.
T Consensus        97 ~~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~  159 (196)
T 2ywi_A           97 SPENMKKVA-EELGYPFPYLYDET---QEVAKAYD-------------AACTPDFYIFDRDLKCVYRGQLDDSRPNNGIP  159 (196)
T ss_dssp             SHHHHHHHH-HHHTCCSCEEECSS---CHHHHHHT-------------CCEESEEEEEETTCBEEEEECSSSCCTTTCCC
T ss_pred             CHHHHHHHH-HHcCCCceEEECCc---hHHHHHhC-------------CCCCCeEEEEcCCCeEEEccccCcccccccCc
Confidence            899999999 88899999986432   33444454             5666999999999999998         5577


Q ss_pred             CChHHHHHHHHHHhh
Q 026011          230 TSPFQIEKDIQKLVV  244 (245)
Q Consensus       230 ~~~~~l~~~l~~ll~  244 (245)
                      .+.+++++.|+++++
T Consensus       160 ~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          160 VTGESIRAALDALLE  174 (196)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHc
Confidence            788999999999885

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.95  E-value=2.5e-27  Score=193.14  Aligned_cols=144  Identities=17%  Similarity=0.270  Sum_probs=119.0

Q ss_pred             ccccccCcccCeEEEcC--CC--CeeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCC
Q 026011           80 ATAATEKSLYDFTVKDI--DG--KDVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFG  153 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~--~G--~~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~  153 (245)
                      ..+.+|+++|+|+++|.  +|  ++++|+++ +||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|   
T Consensus        23 ~~l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D---   99 (221)
T 2c0d_A           23 KLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVD---   99 (221)
T ss_dssp             ---CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESS---
T ss_pred             ccCCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCC---
Confidence            45679999999999998  99  99999999 9999999999 9999999999999999999999999999999998   


Q ss_pred             CCCCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          154 GQEPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                           +.+.+++|+ +++       +++||++.|.+   ..+.+.|+.. ...|       ..+|++||||++|+|++++
T Consensus       100 -----~~~~~~~~~-~~~~~~~g~~~~~fp~l~D~~---~~~~~~ygv~-~~~g-------~~~P~~~lID~~G~I~~~~  162 (221)
T 2c0d_A          100 -----SVYSHLAWK-NMPIEKGGIGNVEFTLVSDIN---KDISKNYNVL-YDNS-------FALRGLFIIDKNGCVRHQT  162 (221)
T ss_dssp             -----CHHHHHHHH-HSCGGGTCCCSCSSEEEECTT---SHHHHHTTCE-ETTT-------EECEEEEEECTTSBEEEEE
T ss_pred             -----CHHHHHHHH-HHhhhhcCccCCceEEEECCc---hHHHHHcCCc-ccCC-------CccceEEEECCCCeEEEEE
Confidence                 788899998 666       78899996532   3456666654 2111       1359999999999999987


Q ss_pred             CCC----CChHHHHHHHHHHh
Q 026011          227 PPT----TSPFQIEKDIQKLV  243 (245)
Q Consensus       227 ~g~----~~~~~l~~~l~~ll  243 (245)
                      .|.    .+.+++.+.|++++
T Consensus       163 ~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          163 VNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             EECTTCCCCHHHHHHHHHHHH
T ss_pred             ecCCCCCCCHHHHHHHHHHHh
Confidence            653    35678888888875

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.95  E-value=3.7e-27  Score=186.41  Aligned_cols=146  Identities=22%  Similarity=0.223  Sum_probs=121.5

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .....|..+|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|+++++++++++++|++|++|      .++
T Consensus        32 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d------~~~  105 (186)
T 1jfu_A           32 TMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID------TRD  105 (186)
T ss_dssp             EECCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECC------CSC
T ss_pred             ccccCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECC------CCC
Confidence            45678999999999999999999999999999999999999999999999999999999888999999998      234


Q ss_pred             hHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC--hHHHH
Q 026011          160 NPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS--PFQIE  236 (245)
Q Consensus       160 ~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~--~~~l~  236 (245)
                      .+.+++|+ +++++ .||++.|.+   ..+.+.|+...         .+.++|++||||++|+|++++.|..+  .+++.
T Consensus       106 ~~~~~~~~-~~~~~~~~~~~~d~~---~~~~~~~~~~~---------~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~  172 (186)
T 1jfu_A          106 PEKPKTFL-KEANLTRLGYFNDQK---AKVFQDLKAIG---------RALGMPTSVLVDPQGCEIATIAGPAEWASEDAL  172 (186)
T ss_dssp             TTHHHHHH-HHTTCCTTCCEECTT---CHHHHHHHTTT---------CCSSSSEEEEECTTSBEEEEEESCCCTTSHHHH
T ss_pred             HHHHHHHH-HHcCCCCCceEECCc---chHHHHhcccc---------ccCCCCEEEEECCCCCEEEEEecCCccCHHHHH
Confidence            57888998 78888 599986533   23344444211         02345999999999999999988764  67899


Q ss_pred             HHHHHHhh
Q 026011          237 KDIQKLVV  244 (245)
Q Consensus       237 ~~l~~ll~  244 (245)
                      +.|+++++
T Consensus       173 ~~l~~ll~  180 (186)
T 1jfu_A          173 KLIRAATG  180 (186)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99999875

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.95  E-value=2.3e-27  Score=188.01  Aligned_cols=146  Identities=21%  Similarity=0.320  Sum_probs=122.6

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      .+.+|..+|+|+++|.+|+.++|++++||++||+||++||++|+.+++.|++++++|+++ +++|+|++|.....+.++.
T Consensus         6 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~   84 (188)
T 2cvb_A            6 ELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAP   84 (188)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSH
T ss_pred             cCCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCH
Confidence            456899999999999999999999999999999999999999999999999999999988 9999999974333334688


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec--------CCCCCh
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY--------PPTTSP  232 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~--------~g~~~~  232 (245)
                      +.+++|+ ++++++||++.|.+   ..+.+.|+             +..+|++||||++|+|+++.        .|..+.
T Consensus        85 ~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~  147 (188)
T 2cvb_A           85 EKMAAFA-EEHGIFFPYLLDET---QEVAKAYR-------------ALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQS  147 (188)
T ss_dssp             HHHHHHH-HHHTCCSCEEECSS---SHHHHHTT-------------CCEESEEEEECTTCBEEEEECSSSCTTCGGGCCC
T ss_pred             HHHHHHH-HHhCCCceEEECCc---chHHHHcC-------------CCCCCeEEEECCCCcEEEEEecCCccccccccCH
Confidence            9999999 88899999996532   33444444             56669999999999999882        223367


Q ss_pred             HHHHHHHHHHhh
Q 026011          233 FQIEKDIQKLVV  244 (245)
Q Consensus       233 ~~l~~~l~~ll~  244 (245)
                      +++.+.|+++++
T Consensus       148 ~~l~~~i~~ll~  159 (188)
T 2cvb_A          148 HDLEAAIEALLR  159 (188)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            899999999885

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=185.26  Aligned_cols=151  Identities=13%  Similarity=0.237  Sum_probs=120.6

Q ss_pred             cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCC-ChHHHHHHHHHHHHhhh----CCcEEEEEecCCCCCCCCCChHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKT----QGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~-C~~~~~~l~~l~~~~~~----~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      |+|+++|.+|+.+++++++||++||+||++||++ |+.+++.|+++++++++    .+++||+|++|    ++.++.+.+
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d----~~~d~~~~~   82 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVD----PERDDVEAM   82 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESC----STTCCHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEEC----CCCCCHHHH
Confidence            8999999999999999999999999999999997 99999999999999975    47999999998    445688999


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhccc--CCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA--GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~--~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                      ++|+ ++++.+|+++.+.......+.+.|++.....  ....++.+.|.|++||||++|+|++++.|..+.+++.+.|++
T Consensus        83 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  161 (171)
T 2rli_A           83 ARYV-QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRR  161 (171)
T ss_dssp             HHHH-HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHH
T ss_pred             HHHH-HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHH
Confidence            9999 8899999988532111112333343221110  011123366778999999999999999999899999999999


Q ss_pred             Hhh
Q 026011          242 LVV  244 (245)
Q Consensus       242 ll~  244 (245)
                      +++
T Consensus       162 ll~  164 (171)
T 2rli_A          162 HMA  164 (171)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.95  E-value=5.7e-27  Score=185.87  Aligned_cols=143  Identities=13%  Similarity=0.225  Sum_probs=119.7

Q ss_pred             cccCcccCeEEEcCCCC----eeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           83 ATEKSLYDFTVKDIDGK----DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~----~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      .+|+.+|+|++++.+|+    .++|++++||++||+|| ++||++|+.+++.|++++++|+++|++|++|++|       
T Consensus         2 ~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d-------   74 (187)
T 1we0_A            2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTD-------   74 (187)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESS-------
T ss_pred             CCCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECC-------
Confidence            57999999999999999    99999999999999999 9999999999999999999999989999999998       


Q ss_pred             CChHHHHHHHHHhc----CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---
Q 026011          158 GSNPEIKEFACTRF----KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---  230 (245)
Q Consensus       158 ~~~~~~~~~~~~~~----~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---  230 (245)
                       +.+.+++|+ +++    +++||++.|.+   ..+.+.|+......+       .++|++||||++|+|++++.|..   
T Consensus        75 -~~~~~~~~~-~~~~~~~~~~~~~~~d~~---~~~~~~~~v~~~~~g-------~~~P~~~lid~~G~i~~~~~g~~~~~  142 (187)
T 1we0_A           75 -THFVHKAWH-ENSPAVGSIEYIMIGDPS---QTISRQFDVLNEETG-------LADRGTFIIDPDGVIQAIEINADGIG  142 (187)
T ss_dssp             -CHHHHHHHH-HSCHHHHTCCSEEEECTT---CHHHHHTTCEETTTT-------EECEEEEEECTTSBEEEEEEECTTSC
T ss_pred             -CHHHHHHHH-HHhccccCCCceEEECCc---hHHHHHhCCCcCCCC-------ceeeEEEEECCCCeEEEEEecCCCCC
Confidence             678899998 677    89999996532   334555553211110       14599999999999999987764   


Q ss_pred             -ChHHHHHHHHHHhh
Q 026011          231 -SPFQIEKDIQKLVV  244 (245)
Q Consensus       231 -~~~~l~~~l~~ll~  244 (245)
                       +.+++.+.|++++.
T Consensus       143 ~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          143 RDASTLINKVKAAQY  157 (187)
T ss_dssp             CCTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhh
Confidence             67889999888763

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.95  E-value=6.9e-27  Score=178.55  Aligned_cols=138  Identities=25%  Similarity=0.336  Sum_probs=119.7

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      +.+|+++|+|++++ +|+.+++++++||++||+||++||++|+.+++.|.+++++++++|+++++|++|.       ..+
T Consensus         3 l~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~~~   74 (152)
T 3gl3_A            3 LDKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDA-------KTG   74 (152)
T ss_dssp             CCTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCS-------SHH
T ss_pred             CCCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCC-------CHH
Confidence            46899999999999 9999999999999999999999999999999999999999999999999999983       678


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC--ChHHHHHHH
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPFQIEKDI  239 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--~~~~l~~~l  239 (245)
                      .+++|+ ++++++|+++.|.+   ..+.+.|+             +..+|++||||++|+|++++.|..  +.+++++.|
T Consensus        75 ~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i  137 (152)
T 3gl3_A           75 DAMKFL-AQVPAEFTVAFDPK---GQTPRLYG-------------VKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQI  137 (152)
T ss_dssp             HHHHHH-HHSCCCSEEEECTT---CHHHHHTT-------------CCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHH
T ss_pred             HHHHHH-HHcCCCCceeECCc---chhHHHcC-------------CCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHH
Confidence            889998 88999999996533   23344444             566799999999999999998865  447899999


Q ss_pred             HHHhh
Q 026011          240 QKLVV  244 (245)
Q Consensus       240 ~~ll~  244 (245)
                      ++++.
T Consensus       138 ~~~~~  142 (152)
T 3gl3_A          138 LAALG  142 (152)
T ss_dssp             HHHTC
T ss_pred             HHHHc
Confidence            88764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.95  E-value=6.8e-27  Score=186.77  Aligned_cols=143  Identities=12%  Similarity=0.192  Sum_probs=119.8

Q ss_pred             cccccCcccCeEEEcCC-------------C--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEE
Q 026011           81 TAATEKSLYDFTVKDID-------------G--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEI  144 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~-------------G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~v  144 (245)
                      .+.+|+.+|+|++++.+             |  +.++|++++||++||+|| ++||++|+.+++.|++++++|++++++|
T Consensus         3 ~l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v   82 (195)
T 2bmx_A            3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   82 (195)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             cCCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence            46789999999999988             7  899999999999999999 9999999999999999999999889999


Q ss_pred             EEEecCCCCCCCCCChHHHHHHHHHhc----CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC
Q 026011          145 LAFPCNQFGGQEPGSNPEIKEFACTRF----KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG  220 (245)
Q Consensus       145 v~Vs~D~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G  220 (245)
                      |+|++|        +.+.+++|+ +++    +++||++.|.+   ..+.+.|+.... .    +   .++|++||||++|
T Consensus        83 v~Vs~d--------~~~~~~~~~-~~~~~~~~~~~~~~~d~~---~~~~~~~~v~~~-~----g---~~~P~~~lid~~G  142 (195)
T 2bmx_A           83 LGVSID--------SEFAHFQWR-AQHNDLKTLPFPMLSDIK---RELSQAAGVLNA-D----G---VADRVTFIVDPNN  142 (195)
T ss_dssp             EEEESS--------CHHHHHHHH-HHCTTGGGCCSCEEECTT---SHHHHHHTCBCT-T----S---SBCEEEEEECTTS
T ss_pred             EEEECC--------CHHHHHHHH-HHhccccCCceeEEeCCc---hHHHHHhCCccc-C----C---CccceEEEEcCCC
Confidence            999998        688999998 777    88999996532   334555553211 0    1   1459999999999


Q ss_pred             cEEEecCCCC----ChHHHHHHHHHHh
Q 026011          221 KVIERYPPTT----SPFQIEKDIQKLV  243 (245)
Q Consensus       221 ~i~~~~~g~~----~~~~l~~~l~~ll  243 (245)
                      +|++++.|..    +.+++.+.|++++
T Consensus       143 ~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          143 EIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            9999987764    6788998888876

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.95  E-value=2.5e-27  Score=181.32  Aligned_cols=137  Identities=12%  Similarity=0.150  Sum_probs=113.5

Q ss_pred             cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF  166 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~  166 (245)
                      ++|+|.+. .+|+.++|++++||++||+||++||++|+.+++.|+++++++++.++++++|++|        +.+.+++|
T Consensus         4 pa~~~~~~-~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d--------~~~~~~~~   74 (151)
T 3raz_A            4 SADELAGW-KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALD--------TSDNIGNF   74 (151)
T ss_dssp             ---CEEET-TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESS--------CHHHHHHH
T ss_pred             Ccchhhcc-cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECC--------ChHHHHHH
Confidence            34455544 7999999999999999999999999999999999999999998889999999998        78999999


Q ss_pred             HHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          167 ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       167 ~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      + ++++++||++.|.+..   ...+++.++        ..+..+|++||||++|+|++++.|..+.+++.+.|+++++
T Consensus        75 ~-~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~  140 (151)
T 3raz_A           75 L-KQTPVSYPIWRYTGAN---SRNFMKTYG--------NTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS  140 (151)
T ss_dssp             H-HHSCCSSCEEEECCSC---HHHHHHTTT--------CCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHT
T ss_pred             H-HHcCCCCceEecCccc---hHHHHHHhC--------CccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            9 8899999999654322   233333221        1145569999999999999999999999999999999875

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.95  E-value=5.3e-27  Score=183.48  Aligned_cols=145  Identities=14%  Similarity=0.180  Sum_probs=117.9

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+.+|+++|+|+++|.+|+.+++++++||++||+|| ++||++|+.+++.|+++++++  ++++||+|+.|        +
T Consensus        20 ~l~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d--------~   89 (171)
T 2yzh_A           20 ELKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMD--------L   89 (171)
T ss_dssp             CCCTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESS--------C
T ss_pred             cCCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCC--------C
Confidence            456899999999999999999999999999999999 899999999999999999999  67999999988        7


Q ss_pred             hHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC-----CCChH
Q 026011          160 NPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP-----TTSPF  233 (245)
Q Consensus       160 ~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g-----~~~~~  233 (245)
                      .+.+++|+ +++++ +||++.|. .+ ..+ +.|+....... ..+   .+.|++||||++|+|++++.|     ..+.+
T Consensus        90 ~~~~~~~~-~~~~~~~~~~l~D~-~~-~~~-~~~gv~~~~~~-~~g---~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~  161 (171)
T 2yzh_A           90 PFAQKRFC-ESFNIQNVTVASDF-RY-RDM-EKYGVLIGEGA-LKG---ILARAVFIIDKEGKVAYVQLVPEITEEPNYD  161 (171)
T ss_dssp             HHHHHHHH-HHTTCCSSEEEECT-TT-CGG-GGGTCBBCSST-TTT---SBCCEEEEECTTSBEEEEEECSBTTSCCCCH
T ss_pred             HHHHHHHH-HHcCCCCeEEeecC-cc-CcH-HHhCCEecccc-cCC---ceeeEEEEEcCCCeEEEEEeCCCcCCCCCHH
Confidence            88899999 78899 89999652 22 345 67765332110 011   135999999999999998854     33567


Q ss_pred             HHHHHHHHHh
Q 026011          234 QIEKDIQKLV  243 (245)
Q Consensus       234 ~l~~~l~~ll  243 (245)
                      ++.+.|+++|
T Consensus       162 ~ll~~l~~ll  171 (171)
T 2yzh_A          162 EVVNKVKELI  171 (171)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhC
Confidence            8888888765

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.95  E-value=2.5e-27  Score=188.16  Aligned_cols=142  Identities=12%  Similarity=0.228  Sum_probs=118.0

Q ss_pred             cccCcccCeEEEcC-CC--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKDI-DG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        83 ~~g~~~pdf~l~~~-~G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+|+++|+|++++. +|  +.++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|        
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d--------   73 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTD--------   73 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECC--------
Confidence            47899999999999 59  899999999999999999 5999999999999999999999999999999998        


Q ss_pred             ChHHHHHHHHHhc----CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----
Q 026011          159 SNPEIKEFACTRF----KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----  230 (245)
Q Consensus       159 ~~~~~~~~~~~~~----~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----  230 (245)
                      +.+.+++|+ +++    +++||++.|.+   ..+.+.|+......    |   .++|++||||++|+|++++.|..    
T Consensus        74 ~~~~~~~~~-~~~~~~~~~~fp~l~D~~---~~~~~~ygv~~~~~----g---~~~p~~~lID~~G~i~~~~~~~~~~~~  142 (186)
T 1n8j_A           74 THFTHKAWH-SSSETIAKIKYAMIGDPT---GALTRNFDNMREDE----G---LADRATFVVDPQGIIQAIEVTAEGIGR  142 (186)
T ss_dssp             CHHHHHHHH-HHCTTGGGCCSEEEECTT---SHHHHHTTCEETTT----T---EECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred             CHHHHHHHH-HHcCcccCCceeEEECCc---hHHHHHhCCccCCC----C---ceeeEEEEECCCCeEEEEEecCCCCCC
Confidence            788899998 777    88999996532   33556666432111    1   13599999999999999987654    


Q ss_pred             ChHHHHHHHHHHh
Q 026011          231 SPFQIEKDIQKLV  243 (245)
Q Consensus       231 ~~~~l~~~l~~ll  243 (245)
                      +.+++.+.|++++
T Consensus       143 ~~~~l~~~l~~l~  155 (186)
T 1n8j_A          143 DASDLLRKIKAAQ  155 (186)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4778888888775

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.95  E-value=4.8e-27  Score=184.72  Aligned_cols=139  Identities=16%  Similarity=0.219  Sum_probs=118.8

Q ss_pred             ccccccccCcccCeEEEcCCC--CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           78 VHATAATEKSLYDFTVKDIDG--KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        78 ~~~~~~~g~~~pdf~l~~~~G--~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      ....+.+|+++|+|+++|.+|  +.+++++++||++||+||++||++|+.+++.|++++++    |++||+|++|     
T Consensus        26 ~~~~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~-----   96 (176)
T 3kh7_A           26 ELPSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----GVVIYGINYK-----   96 (176)
T ss_dssp             GSTTTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCEEEEEEES-----
T ss_pred             cccccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----CCEEEEEeCC-----
Confidence            345577999999999999999  88999999999999999999999999999999999876    6999999987     


Q ss_pred             CCCChHHHHHHHHHhcCCCcce-eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHH
Q 026011          156 EPGSNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ  234 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~p~-~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~  234 (245)
                        ++.+.+++|+ ++++++|+. +.|.  + ..+.+.|+             +..+|++||||++|+|++++.|..+.++
T Consensus        97 --d~~~~~~~~~-~~~~~~~~~~~~d~--~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~  157 (176)
T 3kh7_A           97 --DDNAAAIKWL-NELHNPYLLSISDA--D-GTLGLDLG-------------VYGAPETYLIDKQGIIRHKIVGVVDQKV  157 (176)
T ss_dssp             --CCHHHHHHHH-HHTTCCCSEEEEET--T-CHHHHHHT-------------CCSSCEEEEECTTCBEEEEEESCCCHHH
T ss_pred             --CCHHHHHHHH-HHcCCCCceEEECC--c-chHHHHcC-------------CCCCCeEEEECCCCeEEEEEcCCCCHHH
Confidence              4889999999 889999985 4332  2 33444444             5566999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 026011          235 IEKDIQKLVV  244 (245)
Q Consensus       235 l~~~l~~ll~  244 (245)
                      +.+.|+++|+
T Consensus       158 l~~~l~~~l~  167 (176)
T 3kh7_A          158 WREQLAPLYQ  167 (176)
T ss_dssp             HHHHTHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888888764

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.94  E-value=4.4e-27  Score=180.05  Aligned_cols=139  Identities=19%  Similarity=0.339  Sum_probs=119.3

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      .+|.++|+|++++.+|+.+++++++||++||+||++||++|+.+++.|+++++++++.++++++|++|.      ++.+.
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~------~~~~~   76 (154)
T 3kcm_A            3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDE------GGKVA   76 (154)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCT------THHHH
T ss_pred             CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCC------cchHH
Confidence            589999999999999999999999999999999999999999999999999999999889999999982      34788


Q ss_pred             HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC--ChHHHHHHHH
Q 026011          163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPFQIEKDIQ  240 (245)
Q Consensus       163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--~~~~l~~~l~  240 (245)
                      +++|+ ++++++||++.|.+   ..+.+.|+             +.++|++||||++|+|++++.|..  +.+++.+.|+
T Consensus        77 ~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~  139 (154)
T 3kcm_A           77 VEEFF-RKTGFTLPVLLDAD---KRVGKLYG-------------TTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLN  139 (154)
T ss_dssp             HHHHH-HHHCCCCCEEECTT---CHHHHHHT-------------CCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHH
T ss_pred             HHHHH-HHcCCCeeEEecCc---hHHHHHhC-------------CCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHH
Confidence            99998 88899999996533   33444444             566699999999999999988876  5668888888


Q ss_pred             HHhh
Q 026011          241 KLVV  244 (245)
Q Consensus       241 ~ll~  244 (245)
                      ++..
T Consensus       140 ~l~~  143 (154)
T 3kcm_A          140 NELS  143 (154)
T ss_dssp             TC--
T ss_pred             HHHH
Confidence            7754

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.94  E-value=6.6e-27  Score=179.56  Aligned_cols=133  Identities=24%  Similarity=0.313  Sum_probs=108.0

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +....|+.+|+|+++|.+|+.++|++++||++||+||++||++|+.+++.|++++++|+++|++|++|++|.       .
T Consensus         7 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~-------~   79 (152)
T 2lrt_A            7 EDKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG-------D   79 (152)
T ss_dssp             CSSSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSC-------C
T ss_pred             hhhccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccC-------C
Confidence            445688999999999999999999999999999999999999999999999999999999999999999983       4


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI  235 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l  235 (245)
                      .+.+++|. .+  ++||++.|.+.....+...|+             +..+|++||||++|+|++++.|..+.++.
T Consensus        80 ~~~~~~~~-~~--~~~~~~~d~~~~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~e~~  139 (152)
T 2lrt_A           80 EHFWKTSA-DN--LPWVCVRDANGAYSSYISLYN-------------VTNLPSVFLVNRNNELSARGENIKDLDEA  139 (152)
T ss_dssp             HHHHHHHH-TT--CSSEEEECSSGGGCHHHHHHT-------------CCSCSEEEEEETTTEEEEETTTCSCHHHH
T ss_pred             HHHHHHHH-hC--CCceEEECCCCcchHHHHHcC-------------cccCceEEEECCCCeEEEecCCHHHHHHH
Confidence            56677776 33  678888543311112333443             55569999999999999999987655443

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.94  E-value=3.1e-27  Score=184.94  Aligned_cols=152  Identities=13%  Similarity=0.155  Sum_probs=119.1

Q ss_pred             cccCccc-CeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCC
Q 026011           83 ATEKSLY-DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        83 ~~g~~~p-df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+|+++| +|+++|.+|++++|++++||++||+||++||+ +|..+++.|+++++++++  .++++|+|++|    + .|
T Consensus         2 ~~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d----~-~d   76 (170)
T 3me7_A            2 SLGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD----P-KD   76 (170)
T ss_dssp             CTTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECC----T-TC
T ss_pred             CCCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECC----C-CC
Confidence            4799999 99999999999999999999999999999998 699999999999999975  45999999998    3 57


Q ss_pred             ChHHHHHHHHHhcCCCccee---eccCC-CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-CChH
Q 026011          159 SNPEIKEFACTRFKAEFPIF---DKVDV-NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPF  233 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~---~d~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-~~~~  233 (245)
                      +.+.+++|+ ++++++++.+   ...+. ....+.+.|++....    .++.+.|.|++||||++|+|+..+.|. .+++
T Consensus        77 ~~~~~~~~~-~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~  151 (170)
T 3me7_A           77 TLEDIKRFQ-KEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMT----AGNDFIHPNVVVVLSPELQIKDYIYGVNYNYL  151 (170)
T ss_dssp             CHHHHHHHH-HHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEE----ETTEEECCCEEEEECTTSBEEEEEESSSCCHH
T ss_pred             CHHHHHHHH-HHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEec----CCCccccCceEEEECCCCeEEEEEeCCCCCHH
Confidence            899999999 8889887642   10110 001122222211000    123478889999999999999888775 5788


Q ss_pred             HHHHHHHHHhh
Q 026011          234 QIEKDIQKLVV  244 (245)
Q Consensus       234 ~l~~~l~~ll~  244 (245)
                      ++.+.|++++.
T Consensus       152 ~i~~~l~~~~~  162 (170)
T 3me7_A          152 EFVNALRLARG  162 (170)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhhc
Confidence            99999998875

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.94  E-value=8.9e-27  Score=186.44  Aligned_cols=141  Identities=16%  Similarity=0.207  Sum_probs=118.1

Q ss_pred             cccCcccCeEEEcC--CCC---eeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           83 ATEKSLYDFTVKDI--DGK---DVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        83 ~~g~~~pdf~l~~~--~G~---~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      .+|+.+|+|+++|.  +|+   .++|+++ +||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|     
T Consensus         2 ~~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-----   76 (198)
T 1zof_A            2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID-----   76 (198)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESS-----
T ss_pred             CCCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECC-----
Confidence            57999999999998  898   9999999 9999999999 9999999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHh-------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~-------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+.+++|+ ++       ++++||++.|.+   ..+.+.|+.... .    |   .++|++||||++|+|++++.|
T Consensus        77 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~v~~~-~----g---~~~P~~~lid~~G~i~~~~~g  141 (198)
T 1zof_A           77 ---SEQVHFAWK-NTPVEKGGIGQVSFPMVADIT---KSISRDYDVLFE-E----A---IALRGAFLIDKNMKVRHAVIN  141 (198)
T ss_dssp             ---CHHHHHHHH-TSCGGGTCCCCCSSCEEECTT---SHHHHHTTCEET-T----T---EECEEEEEEETTTEEEEEEEE
T ss_pred             ---CHHHHHHHH-HhhhhcccccCceeEEEECCc---hHHHHHhCCccc-C----C---cccceEEEECCCCEEEEEEec
Confidence               678899998 66       788999996532   334555553210 0    0   156999999999999999877


Q ss_pred             CC----ChHHHHHHHHHHh
Q 026011          229 TT----SPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~~----~~~~l~~~l~~ll  243 (245)
                      ..    +.+++.+.|+++.
T Consensus       142 ~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          142 DLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             SSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHH
Confidence            54    5678888888775

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.94  E-value=4.8e-28  Score=188.72  Aligned_cols=155  Identities=21%  Similarity=0.310  Sum_probs=122.2

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCC-ChHHHHHHHHHHHHhhhC---CcEEEEEecCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQ---GFEILAFPCNQFGGQEP  157 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~-C~~~~~~l~~l~~~~~~~---g~~vv~Vs~D~~~~~~~  157 (245)
                      ...|..+|+|+++|.+| .+++++++||++||+||++||++ |+.+++.|++++++++++   +++||+|++|    ++.
T Consensus        10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d----~~~   84 (172)
T 2k6v_A           10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVD----PER   84 (172)
T ss_dssp             EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESC----TTT
T ss_pred             cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEEC----CCC
Confidence            45788999999999999 99999999999999999999997 999999999999999875   6999999998    345


Q ss_pred             CChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCC--CCCCccccceeEEEECCCCcEEEecCCCC--ChH
Q 026011          158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG--FLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPF  233 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~--~~~~~i~~~P~~~liD~~G~i~~~~~g~~--~~~  233 (245)
                      ++.+.+++|+ ++++.+|+++.|.+.....+.+.|+........  ...+.+.++|++|||| +|+|++++.|..  +.+
T Consensus        85 d~~~~~~~~~-~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~  162 (172)
T 2k6v_A           85 DPPEVADRYA-KAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATD  162 (172)
T ss_dssp             CCHHHHHHHH-HHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHH
T ss_pred             CCHHHHHHHH-HHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHH
Confidence            6789999999 789999999954221001223333321111000  1112367889999999 999999999887  888


Q ss_pred             HHHHHHHHHh
Q 026011          234 QIEKDIQKLV  243 (245)
Q Consensus       234 ~l~~~l~~ll  243 (245)
                      ++.+.|+++|
T Consensus       163 ~l~~~l~~ll  172 (172)
T 2k6v_A          163 RVVADLQALL  172 (172)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhC
Confidence            9999998864

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.94  E-value=6.3e-27  Score=189.72  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=119.7

Q ss_pred             cccccCcccCeEEEcC--CC--CeeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCC
Q 026011           81 TAATEKSLYDFTVKDI--DG--KDVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG  154 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~--~G--~~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~  154 (245)
                      .+.+|+++|+|++++.  +|  ++++|+++ +||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|    
T Consensus        20 ~l~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D----   95 (213)
T 2i81_A           20 PTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVD----   95 (213)
T ss_dssp             CCCBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESS----
T ss_pred             cccCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC----
Confidence            4568999999999998  89  89999999 9999999999 9999999999999999999999889999999998    


Q ss_pred             CCCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          155 QEPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                          +.+.+++|+ +++       +++||++.|.+   ..+.+.|+... ..    |   ..+|++||||++|+|++++.
T Consensus        96 ----~~~~~~~~~-~~~~~~~g~~~~~fp~l~D~~---~~~~~~ygv~~-~~----g---~~~p~~~lID~~G~i~~~~~  159 (213)
T 2i81_A           96 ----SKYTHLAWK-KTPLAKGGIGNIKHTLLSDIT---KSISKDYNVLF-DD----S---VSLRAFVLIDMNGIVQHLLV  159 (213)
T ss_dssp             ----CHHHHHHHH-SSCGGGTCCCSCSSEEEECTT---SHHHHHTTCEE-TT----T---EECEEEEEECTTSBEEEEEE
T ss_pred             ----CHHHHHHHH-HHHHhhCCccCCCceEEECCc---hHHHHHhCCcc-cc----C---CcccEEEEECCCCEEEEEEe
Confidence                788999998 666       78999996532   44566666432 10    0   14599999999999999986


Q ss_pred             CCC----ChHHHHHHHHHHh
Q 026011          228 PTT----SPFQIEKDIQKLV  243 (245)
Q Consensus       228 g~~----~~~~l~~~l~~ll  243 (245)
                      +..    +.+++.+.|++++
T Consensus       160 ~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          160 NNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             ECTTCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHH
Confidence            543    4778888888775

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.94  E-value=2.6e-26  Score=175.29  Aligned_cols=140  Identities=21%  Similarity=0.324  Sum_probs=119.0

Q ss_pred             ccccCccc-CeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           82 AATEKSLY-DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        82 ~~~g~~~p-df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      +.+|+++| +|++++.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.       ..
T Consensus         3 l~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~~   75 (152)
T 2lja_A            3 LRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDK-------NK   75 (152)
T ss_dssp             TTTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCS-------CH
T ss_pred             cccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccC-------cH
Confidence            46899999 99999999999999999999999999999999999999999999999998889999999982       56


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      +.+++|+ ++++++++.+. .|. ...+.+.|+             +.++|+++|||++|++++++.|..+.+++++.|+
T Consensus        76 ~~~~~~~-~~~~~~~~~~~-~d~-~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  139 (152)
T 2lja_A           76 KAWENMV-TKDQLKGIQLH-MGT-DRTFMDAYL-------------INGIPRFILLDRDGKIISANMTRPSDPKTAEKFN  139 (152)
T ss_dssp             HHHHHHH-HHHTCCSEEEE-CSS-CTHHHHHTT-------------CCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHH
T ss_pred             HHHHHHH-HhcCCCCceee-cCc-chhHHHHcC-------------cCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHH
Confidence            7889998 77788764432 221 222333333             5667999999999999999999889999999999


Q ss_pred             HHhh
Q 026011          241 KLVV  244 (245)
Q Consensus       241 ~ll~  244 (245)
                      +++.
T Consensus       140 ~~~~  143 (152)
T 2lja_A          140 ELLG  143 (152)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8874

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.94  E-value=9.8e-27  Score=175.76  Aligned_cols=138  Identities=15%  Similarity=0.248  Sum_probs=116.5

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +...+|..+|+|++++.+|+.+++++ +||++||+||++||++|+.+++.|.++++++++.++.+++|++|    ...++
T Consensus         7 ~~~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d----~~~~~   81 (145)
T 3erw_A            7 AEEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLV----NSEQN   81 (145)
T ss_dssp             -----CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECG----GGSSC
T ss_pred             ccccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEcc----CCcCC
Confidence            34568999999999999999999999 99999999999999999999999999999999778999999997    22358


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI  239 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l  239 (245)
                      .+.+++|+ ++++++||++.|.+   ..+.+.|+             +.++|+++|||++|+|+.++.|..+.+++.+.|
T Consensus        82 ~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           82 QQVVEDFI-KANKLTFPIVLDSK---GELMKEYH-------------IITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             HHHHHHHH-HHTTCCSCEEECSS---SHHHHHTT-------------CCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHHH-HHcCCceeEEEcCc---hhHHHhcC-------------cCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            89999999 88999999985432   23344443             667799999999999999999999998888776

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.94  E-value=9.8e-27  Score=179.54  Aligned_cols=142  Identities=18%  Similarity=0.245  Sum_probs=115.4

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCC-EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +.+|+.+|+|+++|.+|+.+++++++|| ++||+|| ++||++|+.+++.|++++++++++|+++++|++|        +
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~   80 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG--------P   80 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC--------C
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCC--------C
Confidence            6789999999999999999999999998 9999998 9999999999999999999999889999999988        7


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccce--eEEEECCCCcEEEecCCCCC----hH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNF--EKFLVDKNGKVIERYPPTTS----PF  233 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P--~~~liD~~G~i~~~~~g~~~----~~  233 (245)
                      .+.+++|+ ++++++||++.|...+ ..+.+.|+.....         ..+|  ++||||++|+|++++.|..+    .+
T Consensus        81 ~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~~v~~~~---------~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~  149 (160)
T 1xvw_A           81 PPTHKIWA-TQSGFTFPLLSDFWPH-GAVSQAYGVFNEQ---------AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQR  149 (160)
T ss_dssp             HHHHHHHH-HHHTCCSCEEECTTTT-THHHHHTTCEETT---------TTEECSEEEEECTTSBEEEEEECCTTCCCCHH
T ss_pred             HHHHHHHH-HhcCCCceEEecCCcC-hHHHHHcCCcccc---------CCCeeeeEEEECCCCeEEEEEecCCCCCCCHH
Confidence            88999999 7889999999653112 3344555432110         0337  99999999999999887653    34


Q ss_pred             HHHHHHHHH
Q 026011          234 QIEKDIQKL  242 (245)
Q Consensus       234 ~l~~~l~~l  242 (245)
                      ++.+.|+++
T Consensus       150 ~l~~~l~~l  158 (160)
T 1xvw_A          150 LWTDALAAL  158 (160)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            555555544

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.94  E-value=1e-26  Score=180.51  Aligned_cols=141  Identities=11%  Similarity=0.084  Sum_probs=114.3

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+.+|+.+|+|+++|.+|+++++++++||++||+||+ +||++|+.+++.|++++++|  +|++||+|+.|        +
T Consensus        15 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d--------~   84 (163)
T 1psq_A           15 QLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMD--------L   84 (163)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESS--------C
T ss_pred             CCCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECC--------C
Confidence            4568999999999999999999999999999999994 99999999999999999999  67999999988        7


Q ss_pred             hHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC-----ChH
Q 026011          160 NPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT-----SPF  233 (245)
Q Consensus       160 ~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~-----~~~  233 (245)
                      .+.+++|+ +++++ +||++.|. . ...+.+.|+......+      + +.|++||||++|+|++++.|..     +.+
T Consensus        85 ~~~~~~~~-~~~~~~~~~~l~D~-~-~~~~~~~~gv~~~~~g------~-~~p~~~liD~~G~i~~~~~g~~~~~~~~~~  154 (163)
T 1psq_A           85 PFAQKRWC-GAEGLDNAIMLSDY-F-DHSFGRDYALLINEWH------L-LARAVFVLDTDNTIRYVEYVDNINSEPNFE  154 (163)
T ss_dssp             HHHHHHHH-HHHTCTTSEEEECT-T-TCHHHHHHTCBCTTTC------S-BCCEEEEECTTCBEEEEEECSBTTSCCCHH
T ss_pred             HHHHHHHH-HhcCCCCcEEecCC-c-hhHHHHHhCCccccCC------c-eEEEEEEEcCCCeEEEEEecCCcCCCCCHH
Confidence            88899999 78899 99999652 2 2345566664321101      1 2499999999999999986531     336


Q ss_pred             HHHHHHHH
Q 026011          234 QIEKDIQK  241 (245)
Q Consensus       234 ~l~~~l~~  241 (245)
                      ++.+.|++
T Consensus       155 ~~l~~l~~  162 (163)
T 1psq_A          155 AAIAAAKA  162 (163)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77777765

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.7e-27  Score=188.96  Aligned_cols=145  Identities=12%  Similarity=0.148  Sum_probs=117.9

Q ss_pred             ccccccCcccCeEEEcC---CCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDI---DGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~---~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      ..+.+|+++|+|++++.   +|+.++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|     
T Consensus        17 ~~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D-----   91 (211)
T 2pn8_A           17 NLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVD-----   91 (211)
T ss_dssp             --CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             ccCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            34568999999999985   45899999999999999999 9999999999999999999999989999999998     


Q ss_pred             CCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+.+++|+ +++       +++||++.|.+   ..+.+.|+......+       ..+|++||||++|+|++.+.|
T Consensus        92 ---~~~~~~~~~-~~~~~~~g~~~~~fp~l~D~~---~~~~~~ygv~~~~~g-------~~~p~~~lID~~G~I~~~~~g  157 (211)
T 2pn8_A           92 ---SQFTHLAWI-NTPRRQGGLGPIRIPLLSDLT---HQISKDYGVYLEDSG-------HTLRGLFIIDDKGILRQITLN  157 (211)
T ss_dssp             ---CHHHHHHHH-TSCGGGTCCCSCSSCEEECTT---SHHHHHTTCEETTTT-------EECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHH-HHhhhccCccCCceEEEECCc---hHHHHHcCCcccCCC-------cccceEEEECCCCEEEEEEec
Confidence               788899998 666       78899996532   345666664322111       135999999999999998865


Q ss_pred             CC----ChHHHHHHHHHHh
Q 026011          229 TT----SPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~~----~~~~l~~~l~~ll  243 (245)
                      ..    +.+++.+.|+.++
T Consensus       158 ~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          158 DLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             CTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            43    5678888888775

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.94  E-value=1.2e-26  Score=186.29  Aligned_cols=144  Identities=18%  Similarity=0.233  Sum_probs=119.8

Q ss_pred             cccccCcccCeEEEcC--CC--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           81 TAATEKSLYDFTVKDI--DG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~--~G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      .+.+|+++|+|++++.  +|  +.++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|     
T Consensus         5 ~~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D-----   79 (202)
T 1uul_A            5 EAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD-----   79 (202)
T ss_dssp             CCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             cccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----
Confidence            4568999999999997  78  899999999999999999 9999999999999999999999989999999998     


Q ss_pred             CCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+.+++|+ +++       +++||++.|.+   ..+.+.|+......+       .++|++||||++|+|++++.|
T Consensus        80 ---~~~~~~~~~-~~~~~~~~~~~~~~p~l~D~~---~~~~~~ygv~~~~~g-------~~~P~~~lid~~G~i~~~~~g  145 (202)
T 1uul_A           80 ---SEYSHLAWT-SIERKRGGLGQMNIPILADKT---KCIMKSYGVLKEEDG-------VAYRGLFIIDPKQNLRQITVN  145 (202)
T ss_dssp             ---CHHHHHHHH-HSCGGGTCCCSCSSCEEECTT---CHHHHHHTCEETTTT-------EECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHH-HHHHhhCCCCCCceeEEECCc---hHHHHHcCCccCCCC-------ceeeEEEEECCCCEEEEEEeC
Confidence               788899998 666       78999996532   445666664322111       145999999999999999766


Q ss_pred             CC----ChHHHHHHHHHHh
Q 026011          229 TT----SPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~~----~~~~l~~~l~~ll  243 (245)
                      ..    +.+++.+.|++++
T Consensus       146 ~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          146 DLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             CTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            44    4578888888775

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.94  E-value=7.9e-27  Score=181.68  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=113.6

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ..+.+|+++|+|+++|.+|++++|++++||++||+|| ++||++|..+++.|++++++   +|++||+|+.|        
T Consensus        18 ~~l~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d--------   86 (166)
T 3p7x_A           18 QQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISAD--------   86 (166)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESS--------
T ss_pred             ccCCCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECC--------
Confidence            4467999999999999999999999999999999999 78999999999999999887   67999999987        


Q ss_pred             ChHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-----CCh
Q 026011          159 SNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-----TSP  232 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-----~~~  232 (245)
                      +.+.+++|+ +++++ +||++.|.  .+..+.+.|++.....+       .+.|++||||++|+|++++.+.     .+.
T Consensus        87 ~~~~~~~~~-~~~~~~~~~~l~D~--~~~~~~~~~gv~~~~~g-------~~~p~~~liD~~G~i~~~~~~~~~~~~~~~  156 (166)
T 3p7x_A           87 LPFAQKRWC-ASAGLDNVITLSDH--RDLSFGENYGVVMEELR-------LLARAVFVLDADNKVVYKEIVSEGTDFPDF  156 (166)
T ss_dssp             CHHHHHHHH-HHHTCSSCEEEECT--TTCHHHHHHTCEETTTT-------EECCEEEEECTTCBEEEEEECSBTTSCCCH
T ss_pred             CHHHHHHHH-HHcCCCceEEccCC--chhHHHHHhCCccccCC-------ceeeEEEEECCCCeEEEEEEcCCcccCCCH
Confidence            889999999 78899 89999654  12456677775432211       1359999999999999985332     244


Q ss_pred             HHHHHHHHH
Q 026011          233 FQIEKDIQK  241 (245)
Q Consensus       233 ~~l~~~l~~  241 (245)
                      +++.+.|++
T Consensus       157 ~~il~~l~~  165 (166)
T 3p7x_A          157 DAALAAYKN  165 (166)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            566665553

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.94  E-value=1e-26  Score=186.55  Aligned_cols=160  Identities=18%  Similarity=0.197  Sum_probs=118.9

Q ss_pred             ccccccCcc--cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCC-ChHHHHHHHHHHHHhhhC---CcEEEEEecCCCC
Q 026011           80 ATAATEKSL--YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQ---GFEILAFPCNQFG  153 (245)
Q Consensus        80 ~~~~~g~~~--pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~-C~~~~~~l~~l~~~~~~~---g~~vv~Vs~D~~~  153 (245)
                      ....+|.++  |+|+++|.+|+.+++++++||++||+||++||++ |+.+++.|+++++++.++   +++||+|++|   
T Consensus        11 ~~~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D---   87 (200)
T 2b7k_A           11 ANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD---   87 (200)
T ss_dssp             -----CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC---
T ss_pred             hHhccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECC---
Confidence            334577775  9999999999999999999999999999999997 999999999999999853   7999999998   


Q ss_pred             CCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhccc---CCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          154 GQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                       ++.|+.+.+++|+ ++++.+|+.+.+.......+.+.|++.....   ....++.+.|.|++||||++|+|+..+.|..
T Consensus        88 -~~~d~~~~~~~~~-~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~  165 (200)
T 2b7k_A           88 -PARDSPAVLKEYL-SDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNY  165 (200)
T ss_dssp             -TTTCCHHHHHHHH-TTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTC
T ss_pred             -CCCCCHHHHHHHH-HHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCC
Confidence             4456889999999 8888888877431111112333444321000   0001233567799999999999999999888


Q ss_pred             ChHHHHHHHHHHhh
Q 026011          231 SPFQIEKDIQKLVV  244 (245)
Q Consensus       231 ~~~~l~~~l~~ll~  244 (245)
                      +.+++.+.|+++|+
T Consensus       166 ~~~~~~~~i~~~l~  179 (200)
T 2b7k_A          166 DEKTGVDKIVEHVK  179 (200)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888887764

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.94  E-value=1.2e-26  Score=175.92  Aligned_cols=143  Identities=17%  Similarity=0.236  Sum_probs=122.6

Q ss_pred             cccCcccCeEE--EcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           83 ATEKSLYDFTV--KDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        83 ~~g~~~pdf~l--~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      .+|+++|+|++  ++.+|+.+++++++||++||+||++||++|+.+++.|++++++++++ +.+++|++|..  ...++.
T Consensus         2 ~~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~--~~~~~~   78 (148)
T 2b5x_A            2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRS--EDDLDP   78 (148)
T ss_dssp             CTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCS--TTTSSH
T ss_pred             CCCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCC--ccccCH
Confidence            57999999999  78999999999999999999999999999999999999999999987 99999999832  222378


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      +.+++|+ ++++++||++.|.+   ..+.+.|+             +.++|+++|+|++|+++.++.|..+.+++.+.|+
T Consensus        79 ~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  141 (148)
T 2b5x_A           79 GKIKETA-AEHDITQPIFVDSD---HALTDAFE-------------NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN  141 (148)
T ss_dssp             HHHHHHH-HHTTCCSCEEECSS---CHHHHHTC-------------CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCcceEECCc---hhHHHHhC-------------CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHH
Confidence            8999999 88999999985432   22333343             6667999999999999999999888999999999


Q ss_pred             HHhhC
Q 026011          241 KLVVA  245 (245)
Q Consensus       241 ~ll~~  245 (245)
                      ++|++
T Consensus       142 ~~l~~  146 (148)
T 2b5x_A          142 RVLAE  146 (148)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99863

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.94  E-value=2.1e-26  Score=183.42  Aligned_cols=141  Identities=20%  Similarity=0.207  Sum_probs=116.9

Q ss_pred             cccCcccCeEEEcC--CC--CeeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           83 ATEKSLYDFTVKDI--DG--KDVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        83 ~~g~~~pdf~l~~~--~G--~~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      ++|+++|+|++++.  +|  +.++|+++ +||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|      
T Consensus         1 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d------   74 (192)
T 2h01_A            1 AFQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD------   74 (192)
T ss_dssp             CCSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS------
T ss_pred             CCCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeC------
Confidence            36899999999998  99  89999999 9999999999 9999999999999999999999889999999998      


Q ss_pred             CCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          157 PGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                        +.+.+++|+ +++       +++||++.|.+   ..+.+.|+... ..    |   ..+|++||||++|+|++++.|.
T Consensus        75 --~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~---~~~~~~~gv~~-~~----g---~~~P~~~liD~~G~i~~~~~g~  140 (192)
T 2h01_A           75 --SKFTHLAWK-KTPLSQGGIGNIKHTLISDIS---KSIARSYDVLF-NE----S---VALRAFVLIDKQGVVQHLLVNN  140 (192)
T ss_dssp             --CHHHHHHHH-TSCGGGTCCCSCSSEEEECTT---SHHHHHTTCEE-TT----T---EECCEEEEECTTSBEEEEEEGG
T ss_pred             --CHHHHHHHH-HhHHhhCCccCCCcCeEECCc---HHHHHHhCCcC-cC----C---ceeeEEEEEcCCCEEEEEEeCC
Confidence              788999998 666       78899996532   34555565321 00    1   1459999999999999998764


Q ss_pred             C----ChHHHHHHHHHHh
Q 026011          230 T----SPFQIEKDIQKLV  243 (245)
Q Consensus       230 ~----~~~~l~~~l~~ll  243 (245)
                      .    +.+++.+.|++++
T Consensus       141 ~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          141 LALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             GSSGGGHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            3    3667888887765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.94  E-value=1.1e-26  Score=180.12  Aligned_cols=143  Identities=19%  Similarity=0.257  Sum_probs=121.3

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC---------
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN---------  150 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D---------  150 (245)
                      ....+|.++|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|.+++++++  +++|++|++|         
T Consensus         9 ~~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~   86 (165)
T 3ha9_A            9 HSEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALG   86 (165)
T ss_dssp             HHHHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHT
T ss_pred             ccccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccc
Confidence            34568999999999999999999999999999999999999999999999999999998  6999999997         


Q ss_pred             --CCCCCCCCChHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          151 --QFGGQEPGSNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       151 --~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                        ..+.++.++.+.+++|+ +++++ +||++.|   + ..+.+.|+             |.++|++||||++|+|++  .
T Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d---~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~--~  146 (165)
T 3ha9_A           87 LNKPGYPPPDTPEMFRKFI-ANYGDPSWIMVMD---D-GSLVEKFN-------------VRSIDYIVIMDKSSNVLY--A  146 (165)
T ss_dssp             CCSTTSCCCCCHHHHHHHH-HHHSCTTSEEEEC---C-SHHHHHTT-------------CCSSSEEEEEETTCCEEE--E
T ss_pred             cccccCCCCCCHHHHHHHH-HHcCCCCeeEEeC---h-HHHHHHhC-------------CCCceEEEEEcCCCcEEE--e
Confidence              23344456899999999 88899 9999965   2 33444444             666799999999999988  6


Q ss_pred             CCC-ChHHHHHHHHHHhh
Q 026011          228 PTT-SPFQIEKDIQKLVV  244 (245)
Q Consensus       228 g~~-~~~~l~~~l~~ll~  244 (245)
                      |.. +.+++++.|++++.
T Consensus       147 g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          147 GTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             EESCCHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            767 88999999998874

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.94  E-value=5.1e-26  Score=185.27  Aligned_cols=145  Identities=15%  Similarity=0.164  Sum_probs=118.0

Q ss_pred             ccccccCcccCeEEEc---CCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           80 ATAATEKSLYDFTVKD---IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~---~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      ..+.+|+++|+|++++   .+|++++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|     
T Consensus        25 ~~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D-----   99 (220)
T 1zye_A           25 PAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD-----   99 (220)
T ss_dssp             --CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS-----
T ss_pred             CcccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            3467999999999985   568999999999999999999 9999999999999999999999989999999998     


Q ss_pred             CCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+.+++|+ +++       +++||++.|.+   ..+.+.|+......+       ..+|++||||++|+|++++.|
T Consensus       100 ---~~~~~~~~~-~~~~~~~g~~~~~fp~l~D~~---~~i~~~ygv~~~~~g-------~~~P~~~liD~~G~I~~~~~g  165 (220)
T 1zye_A          100 ---SHFSHLAWI-NTPRKNGGLGHMNIALLSDLT---KQISRDYGVLLEGPG-------LALRGLFIIDPNGVIKHLSVN  165 (220)
T ss_dssp             ---CHHHHHHHH-TSCGGGTCCCSCSSEEEECTT---SHHHHHTTCEETTTT-------EECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHH-HHHHHhCCCcCCceEEEECCc---HHHHHHhCCeecCCC-------cccceEEEECCCCEEEEEEec
Confidence               778899998 665       78899996533   445666664321111       145999999999999998766


Q ss_pred             CC----ChHHHHHHHHHHh
Q 026011          229 TT----SPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~~----~~~~l~~~l~~ll  243 (245)
                      ..    +.+++.+.|++++
T Consensus       166 ~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          166 DLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             CTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            53    4578888888876

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.94  E-value=1.1e-26  Score=189.37  Aligned_cols=144  Identities=12%  Similarity=0.204  Sum_probs=113.7

Q ss_pred             ccccccCcccCeEEEcC---CCCeeecCCCCCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDI---DGKDVPLSKFKGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~---~G~~v~l~~~~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      ..+.+|+++|+|+++++   +|++++|++++||++||+||+ +||++|+.+++.|++++++|+++|++||+|++|     
T Consensus        38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D-----  112 (222)
T 3ztl_A           38 MVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTD-----  112 (222)
T ss_dssp             --CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             ccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            45779999999999965   459999999999999999996 999999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+...+|. +.+       +++||++.|.+   ..+.+.|++.....+       ..+|++||||++|+|++++.+
T Consensus       113 ---~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~---~~~~~~ygv~~~~~g-------~~~P~~~lID~~G~I~~~~~g  178 (222)
T 3ztl_A          113 ---SQYSHLAWD-NLDRKSGGLGHMKIPLLADRK---QEISKAYGVFDEEDG-------NAFRGLFIIDPNGILRQITIN  178 (222)
T ss_dssp             ---CHHHHHHHH-HSCGGGTSCCSCSSCEEECSS---SHHHHHTTCBCTTTS-------SBCEEEEEECTTSEEEEEEEE
T ss_pred             ---CHHHHHHHH-HHhhhhccccccceeEEeCCc---hHHHHHcCCeecCCC-------CccceEEEECCCCeEEEEEec
Confidence               778888988 555       88999996643   345566664322111       034999999999999999876


Q ss_pred             CCC----hHHHHHHHHHH
Q 026011          229 TTS----PFQIEKDIQKL  242 (245)
Q Consensus       229 ~~~----~~~l~~~l~~l  242 (245)
                      ..+    .+++.+.|+.+
T Consensus       179 ~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          179 DKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             CTTBCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            543    34555555443

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.94  E-value=1.2e-26  Score=179.35  Aligned_cols=142  Identities=12%  Similarity=0.203  Sum_probs=113.7

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCC--EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK--VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk--~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      .+.+|+.+|+|+++|.+|++++|++++||  ++||+|| ++||++|+.+++.|++++++|+++| +||+|+.|       
T Consensus         6 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d-------   77 (159)
T 2a4v_A            6 ELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSAD-------   77 (159)
T ss_dssp             CCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESC-------
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCC-------
Confidence            45689999999999999999999999887  8999987 9999999999999999999999999 99999988       


Q ss_pred             CChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChH---H
Q 026011          158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPF---Q  234 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~---~  234 (245)
                       +.+.+++|+ ++++++||++.|.+   ..+.+.|+.......+       ..|++||| ++|+|++++.|..+.+   +
T Consensus        78 -~~~~~~~~~-~~~~~~~~~l~D~~---~~~~~~~gv~~~p~~g-------~~~~~~li-~~G~i~~~~~g~~~~~~~~~  144 (159)
T 2a4v_A           78 -SVTSQKKFQ-SKQNLPYHLLSDPK---REFIGLLGAKKTPLSG-------SIRSHFIF-VDGKLKFKRVKISPEVSVND  144 (159)
T ss_dssp             -CHHHHHHHH-HHHTCSSEEEECTT---CHHHHHHTCBSSSSSC-------BCCEEEEE-ETTEEEEEEESCCHHHHHHH
T ss_pred             -CHHHHHHHH-HHhCCCceEEECCc---cHHHHHhCCcccccCC-------ccceEEEE-cCCEEEEEEccCCccccHHH
Confidence             788999999 78899999996532   3455666643321111       13689999 9999999998865443   3


Q ss_pred             HHHHHHHHh
Q 026011          235 IEKDIQKLV  243 (245)
Q Consensus       235 l~~~l~~ll  243 (245)
                      +.+.|.+++
T Consensus       145 ~~~~l~~~l  153 (159)
T 2a4v_A          145 AKKEVLEVA  153 (159)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.94  E-value=1.2e-26  Score=177.81  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=119.9

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      .+.+|.++|+|++++.+|+.+++++++ |++||+||++||++|+.+++.|+++++++   ++++++|++|     ..++.
T Consensus         4 ~l~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d-----~~~~~   74 (154)
T 3ia1_A            4 AVKPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISRE-----PRDTR   74 (154)
T ss_dssp             CCCSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECC-----TTCCH
T ss_pred             cCCCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCC-----CcccH
Confidence            467899999999999999999999999 99999999999999999999999999999   6999999995     13588


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      +.+++|+ ++++++||++.|....   ...+.+.+          .+..+|++||||++|+|+.++.|..+.+++.+.|+
T Consensus        75 ~~~~~~~-~~~~~~~~~~~d~~~~---~~~~~~~~----------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  140 (154)
T 3ia1_A           75 EVVLEYM-KTYPRFIPLLASDRDR---PHEVAARF----------KVLGQPWTFVVDREGKVVALFAGRAGREALLDALL  140 (154)
T ss_dssp             HHHHHHH-TTCTTEEECBCCSSCC---HHHHHTTS----------SBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCcccccccccc---hHHHHHHh----------CCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHH
Confidence            9999999 8999999998542111   12222211          16667999999999999999999999999999999


Q ss_pred             HHhh
Q 026011          241 KLVV  244 (245)
Q Consensus       241 ~ll~  244 (245)
                      ++++
T Consensus       141 ~~~~  144 (154)
T 3ia1_A          141 LAGA  144 (154)
T ss_dssp             HTTC
T ss_pred             hccC
Confidence            8764

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.93  E-value=2.6e-26  Score=178.66  Aligned_cols=131  Identities=11%  Similarity=0.097  Sum_probs=108.1

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+.+|+.+|+|+++|.+|+.++|++++||++||+|| ++||++|..+++.|++++++|  +|++||+|+.|        +
T Consensus        16 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d--------~   85 (165)
T 1q98_A           16 FPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISAD--------L   85 (165)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESS--------C
T ss_pred             cCCCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCC--------C
Confidence            456899999999999999999999999999999999 899999999999999999999  67999999988        7


Q ss_pred             hHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          160 NPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       160 ~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                      .+.+++|+ +++++ +||++.|.  ....+.+.|+..... +...|   .+.|++||||++|+|++++.|
T Consensus        86 ~~~~~~~~-~~~~~~~~~~l~D~--~~~~~~~~~gv~~~~-~~~~g---~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A           86 PFAQARFC-GAEGIENAKTVSTF--RNHALHSQLGVDIQT-GPLAG---LTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             HHHHTTCT-TTTTCTTEEEEECT--TCTHHHHHTTCEECS-STTTT---SBCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHH-HHcCCCceEEeecc--ccchHHHHhCceecc-cccCC---ccceeEEEEcCCCEEEEEEeC
Confidence            88899998 78899 79999653  224455666643221 01111   145999999999999999864

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.9e-26  Score=184.65  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=119.1

Q ss_pred             ccccCcccCeEEE---cCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           82 AATEKSLYDFTVK---DIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        82 ~~~g~~~pdf~l~---~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      +++|+++|||+++   |.++++++|++|+||++||+|| +.|||+|..+++.|++.+++|+++|++||+||+|       
T Consensus        23 ~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~D-------   95 (216)
T 3sbc_A           23 AQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTD-------   95 (216)
T ss_dssp             CCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESS-------
T ss_pred             hhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecC-------
Confidence            5699999999987   5566899999999999999999 9999999999999999999999999999999998       


Q ss_pred             CChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-
Q 026011          158 GSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-  229 (245)
Q Consensus       158 ~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-  229 (245)
                       +.+.+++|. +..       +++||++.|.+   ..+.+.|+++....+-       ..+.+||||++|+|++..... 
T Consensus        96 -s~~sh~aw~-~~~~~~~~~~~l~fpllsD~~---~~vak~YGv~~~~~g~-------~~R~tFiID~~G~Ir~~~v~~~  163 (216)
T 3sbc_A           96 -SEYSLLAWT-NIPRKEGGLGPINIPLLADTN---HSLSRDYGVLIEEEGV-------ALRGLFIIDPKGVIRHITINDL  163 (216)
T ss_dssp             -CHHHHHHHH-TSCGGGTCCCSCSSCEEECTT---SHHHHHHTCEETTTTE-------ECEEEEEECTTSBEEEEEEECT
T ss_pred             -chhhHHHHH-HHHHHhCCccCcccceEeCCC---CHHHHHcCCeeccCCc-------eeeEEEEECCCCeEEEEEEcCC
Confidence             899999998 443       57899997654   5688899977654331       238999999999998765222 


Q ss_pred             ---CChHHHHHHHHHHh
Q 026011          230 ---TSPFQIEKDIQKLV  243 (245)
Q Consensus       230 ---~~~~~l~~~l~~ll  243 (245)
                         .+.+++.+.|+.+.
T Consensus       164 ~~grn~dEiLr~l~AlQ  180 (216)
T 3sbc_A          164 PVGRNVDEALRLVEAFQ  180 (216)
T ss_dssp             TBCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence               26778888877764

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.93  E-value=2.6e-26  Score=184.39  Aligned_cols=145  Identities=14%  Similarity=0.164  Sum_probs=115.1

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ..+.+|+.+|+|+++|.+|+.++|++++||++||+|| ++||++|..+++.|++++++|  +|++||+||.|        
T Consensus        50 ~~l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D--------  119 (200)
T 3zrd_A           50 KLPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSD--------  119 (200)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESS--------
T ss_pred             ccCCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECC--------
Confidence            4567999999999999999999999999999999999 789999999999999999999  57999999988        


Q ss_pred             ChHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC--ChHHH
Q 026011          159 SNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPFQI  235 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--~~~~l  235 (245)
                      +.+.+++|+ +++++ +||++.|..  ...+.+.|++..... ...|  + +.|++||||++|+|++++.+..  ...++
T Consensus       120 ~~~~~~~~~-~~~~~~~f~~l~D~~--~~~~~~~ygv~~~~~-~~~g--~-~~p~~~lID~~G~I~~~~~~~~~~~~~~~  192 (200)
T 3zrd_A          120 LPFAQSRFC-GAEGLSNVITLSTLR--GADFKQAYGVAITEG-PLAG--L-TARAVVVLDGQDNVIYSELVNEITTEPNY  192 (200)
T ss_dssp             CHHHHTTCT-TTTTCTTEEEEETTS--CTHHHHHTTCEECSS-TTTT--S-BCCEEEEECTTSBEEEEEECSBTTSCCCH
T ss_pred             CHHHHHHHH-HHcCCCCceEEecCc--hHHHHHHhCceeecc-cCCC--c-cccEEEEECCCCeEEEEEecCCcccCCCH
Confidence            788999998 88999 999996641  345666776543221 0111  1 4599999999999999875432  22345


Q ss_pred             HHHHHH
Q 026011          236 EKDIQK  241 (245)
Q Consensus       236 ~~~l~~  241 (245)
                      ++.|+.
T Consensus       193 ~~~l~~  198 (200)
T 3zrd_A          193 DAALAA  198 (200)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555544

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.93  E-value=8.3e-26  Score=168.66  Aligned_cols=134  Identities=16%  Similarity=0.211  Sum_probs=116.0

Q ss_pred             cCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011           85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        85 g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      |..+|+|++++.+|+.+++++++||++||+||++||++|+.+++.|++++++++  +++++.|++|       ++.+.++
T Consensus         2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~-------~~~~~~~   72 (136)
T 1zzo_A            2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGL-------DQVPAMQ   72 (136)
T ss_dssp             CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECS-------SCHHHHH
T ss_pred             CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCC-------CCHHHHH
Confidence            567999999999999999999999999999999999999999999999999997  6999999988       3688999


Q ss_pred             HHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          165 EFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       165 ~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      +|+ +++++ +||++.|.+   ..+.+.|+             +.++|+++|||++|+++ ++.|..+.+++.+.|++++
T Consensus        73 ~~~-~~~~~~~~~~~~d~~---~~~~~~~~-------------i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A           73 EFV-NKYPVKTFTQLADTD---GSVWANFG-------------VTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             HHH-HHTTCTTSEEEECTT---CHHHHHTT-------------CCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred             HHH-HHcCCCceEEEEcCC---cHHHHHcC-------------CCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence            998 88898 999985432   22333343             56679999999999999 8889889999999999988


Q ss_pred             hC
Q 026011          244 VA  245 (245)
Q Consensus       244 ~~  245 (245)
                      ++
T Consensus       135 ~~  136 (136)
T 1zzo_A          135 SR  136 (136)
T ss_dssp             --
T ss_pred             cC
Confidence            63

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.93  E-value=1.8e-26  Score=199.78  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=126.3

Q ss_pred             ccccccCcccCeE-----EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCC
Q 026011           80 ATAATEKSLYDFT-----VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG  154 (245)
Q Consensus        80 ~~~~~g~~~pdf~-----l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~  154 (245)
                      ..+.+|.++|+|+     +.+.+|+.+++++++||++||+||++||++|+.+++.|++++++|++++++||+|++|++. 
T Consensus        49 ~~l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~-  127 (352)
T 2hyx_A           49 AQLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYA-  127 (352)
T ss_dssp             SSCCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSG-
T ss_pred             cccCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCccc-
Confidence            4467999999999     9999999999999999999999999999999999999999999999988999999987321 


Q ss_pred             CCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHH
Q 026011          155 QEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ  234 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~  234 (245)
                       ..++.+.+++|+ ++++++||++.|.+   ..+.+.|+             |.++|++||||++|+|++++.|..+.++
T Consensus       128 -~~d~~~~~~~~~-~~~~l~fpv~~D~~---~~l~~~yg-------------V~~~Pt~~lID~~G~Iv~~~~G~~~~~~  189 (352)
T 2hyx_A          128 -FEKVPGNVAKGA-ANLGISYPIALDNN---YATWTNYR-------------NRYWPAEYLIDATGTVRHIKFGEGDYNV  189 (352)
T ss_dssp             -GGGCHHHHHHHH-HHHTCCSCEEECTT---SHHHHHTT-------------CCEESEEEEECTTSBEEEEEESBCCHHH
T ss_pred             -ccCCHHHHHHHH-HHcCCCccEEeCCc---HHHHHHcC-------------CCccCEEEEEeCCCeEEEEEcCCCCHHH
Confidence             235789999999 88999999985532   22333343             6667999999999999999999889999


Q ss_pred             HHHHHHHHhh
Q 026011          235 IEKDIQKLVV  244 (245)
Q Consensus       235 l~~~l~~ll~  244 (245)
                      +++.|+++|+
T Consensus       190 l~~~I~~lL~  199 (352)
T 2hyx_A          190 TETLVRQLLN  199 (352)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.93  E-value=4.7e-26  Score=183.78  Aligned_cols=144  Identities=18%  Similarity=0.203  Sum_probs=120.2

Q ss_pred             cccccCcccCeEE----EcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           81 TAATEKSLYDFTV----KDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        81 ~~~~g~~~pdf~l----~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      .+++|+++|||++    .|.+|++++|+||+||++||+|| ..|||+|..++..|++.+++|+++|++||+||+|     
T Consensus        25 ~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~D-----   99 (219)
T 3tue_A           25 NAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSID-----   99 (219)
T ss_dssp             CCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESS-----
T ss_pred             ccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCC-----
Confidence            3579999999994    46788999999999999999999 9999999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHh-------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~-------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+.+++|+ ++       ++++||+++|.+   ..+.+.|+++....+-       ..+.+||||++|+|++.+..
T Consensus       100 ---s~~sh~~w~-~~~~~~~~~~~l~fpllsD~~---~~va~~yGv~~~~~g~-------~~R~tFiIDp~g~Ir~~~~~  165 (219)
T 3tue_A          100 ---SEYAHLQWT-LQDRKKGGLGTMAIPILADKT---KNIARSYGVLEESQGV-------AYRGLFIIDPHGMLRQITVN  165 (219)
T ss_dssp             ---CHHHHHHHH-HSCGGGTCCCSCSSCEEECTT---SHHHHHTTCEETTTTE-------ECEEEEEECTTSBEEEEEEE
T ss_pred             ---chhhHHHHh-hhhHHhcCccccccccccCcc---cHHHHHcCCcccCCCe-------eEEEEEEECCCCeEEEEEEe
Confidence               899999998 44       367899997755   5688999987654331       12889999999999976522


Q ss_pred             C----CChHHHHHHHHHHh
Q 026011          229 T----TSPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~----~~~~~l~~~l~~ll  243 (245)
                      .    .+.+++.+.|+.|.
T Consensus       166 ~~~~gr~~~EvLr~l~aLQ  184 (219)
T 3tue_A          166 DMPVGRSVEEVLRLLEAFQ  184 (219)
T ss_dssp             CTTCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHhh
Confidence            1    26778888887764

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.93  E-value=2e-26  Score=179.21  Aligned_cols=144  Identities=15%  Similarity=0.139  Sum_probs=117.0

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCC-CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~-C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+.+|+.+|+|+++|.+|+++++++++||++||+||++| |++|+.+++.|++++++|  .++++|+|+.|        +
T Consensus        17 ~~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d--------~   86 (167)
T 2jsy_A           17 EVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISAD--------L   86 (167)
T ss_dssp             CCCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECS--------S
T ss_pred             ccCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECC--------C
Confidence            467899999999999999999999999999999999999 999999999999999999  56999999988        6


Q ss_pred             hHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-----CChH
Q 026011          160 NPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-----TSPF  233 (245)
Q Consensus       160 ~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-----~~~~  233 (245)
                      .+.+++|+ +++++ +||++.|.  ....+.+.|+......+      + ..|++||||++|+|++++.|.     .+.+
T Consensus        87 ~~~~~~~~-~~~~~~~~~~~~d~--~~~~~~~~~~v~~~~~g------~-~~p~~~lid~~G~i~~~~~g~~~~~~~~~~  156 (167)
T 2jsy_A           87 PFAQARWC-GANGIDKVETLSDH--RDMSFGEAFGVYIKELR------L-LARSVFVLDENGKVVYAEYVSEATNHPNYE  156 (167)
T ss_dssp             GGGTSCCG-GGSSCTTEEEEEGG--GTCHHHHHTTCBBTTTC------S-BCCEEEEECTTSCEEEEEECSBTTSCCCSH
T ss_pred             HHHHHHHH-HhcCCCCceEeeCC--chhHHHHHhCCccccCC------c-eeeEEEEEcCCCcEEEEEecCCcCCCCCHH
Confidence            67788898 78899 89999762  12334555553221101      1 249999999999999998643     2457


Q ss_pred             HHHHHHHHHhh
Q 026011          234 QIEKDIQKLVV  244 (245)
Q Consensus       234 ~l~~~l~~ll~  244 (245)
                      ++.+.|+++++
T Consensus       157 ~l~~~l~~llk  167 (167)
T 2jsy_A          157 KPIEAAKALVK  167 (167)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            89999998874

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.93  E-value=7.2e-26  Score=188.02  Aligned_cols=145  Identities=14%  Similarity=0.160  Sum_probs=117.9

Q ss_pred             cccccccCcccCeEEEc---CCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCC
Q 026011           79 HATAATEKSLYDFTVKD---IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG  154 (245)
Q Consensus        79 ~~~~~~g~~~pdf~l~~---~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~  154 (245)
                      ...+.+|+++|+|++++   .+|++++|++++||++||+|| ++||++|+.+++.|++++++|+++|++||+||+|    
T Consensus        59 ~~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D----  134 (254)
T 3tjj_A           59 LSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVD----  134 (254)
T ss_dssp             CCCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS----
T ss_pred             ccccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCC----
Confidence            35567999999999875   467899999999999999999 9999999999999999999999999999999998    


Q ss_pred             CCCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          155 QEPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                          +.+.+.+|+ +++       +++||++.|.+   ..+.+.|+++....+       ...|++||||++|+|++++.
T Consensus       135 ----~~~~~~~~~-~~~~~~~g~~~~~fp~l~D~~---~~va~~ygv~~~~~g-------~~~p~tflID~~G~I~~~~~  199 (254)
T 3tjj_A          135 ----SQFTHLAWI-NTPRRQGGLGPIRIPLLSDLT---HQISKDYGVYLEDSG-------HTLRGLFIIDDKGILRQITL  199 (254)
T ss_dssp             ----CHHHHHHHH-TSCGGGTSCCSCSSCEEECTT---SHHHHHHTCEETTTT-------EECEEEEEECTTSBEEEEEE
T ss_pred             ----CHHHHHHHH-HHHHHhcCCcccccceeeCcH---HHHHHHcCCccccCC-------CccceEEEECCCCeEEEEEe
Confidence                788999998 565       78999996644   456777775433221       13499999999999998876


Q ss_pred             CCC----ChHHHHHHHHHH
Q 026011          228 PTT----SPFQIEKDIQKL  242 (245)
Q Consensus       228 g~~----~~~~l~~~l~~l  242 (245)
                      +..    +.+++.+.|+.+
T Consensus       200 ~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          200 NDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             ECTTCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHhh
Confidence            533    445666666654

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.93  E-value=1.1e-25  Score=168.26  Aligned_cols=132  Identities=13%  Similarity=0.232  Sum_probs=114.3

Q ss_pred             CcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011           86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE  165 (245)
Q Consensus        86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~  165 (245)
                      ..+|+|++++.+|+.+++++++||++||+||++||++|..+++.|++++++++  ++++++|++|       ++.+.+++
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~-------~~~~~~~~   72 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATR-------ADVGAMQS   72 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECS-------SCHHHHHH
T ss_pred             CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcC-------CCHHHHHH
Confidence            36899999999999999999999999999999999999999999999999997  6999999998       36889999


Q ss_pred             HHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC---CCCChHHHHHHHHHH
Q 026011          166 FACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP---PTTSPFQIEKDIQKL  242 (245)
Q Consensus       166 ~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~---g~~~~~~l~~~l~~l  242 (245)
                      |+ ++++++||++.|.+   ..+.+.|+             +.++|+++|+|++|+++ ++.   |..+.+++.+.|+++
T Consensus        73 ~~-~~~~~~~~~~~d~~---~~~~~~~~-------------i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           73 FV-SKYNLNFTNLNDAD---GVIWARYN-------------VPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             HH-HHHTCCSEEEECTT---SHHHHHTT-------------CCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred             HH-HHcCCCceEEECCc---hhHHHhcC-------------CCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence            99 88899999986432   22334443             56669999999999999 888   988999999999987


Q ss_pred             hh
Q 026011          243 VV  244 (245)
Q Consensus       243 l~  244 (245)
                      ++
T Consensus       135 l~  136 (136)
T 1lu4_A          135 TS  136 (136)
T ss_dssp             --
T ss_pred             hC
Confidence            63

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.93  E-value=7.5e-26  Score=184.72  Aligned_cols=149  Identities=13%  Similarity=0.140  Sum_probs=117.5

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCC-E-EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-V-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~-vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+.+|+.+|+|++.+.+| +++|++++|| + ||++||++||++|..+++.|++++++|+++|++||+||+|        
T Consensus         4 ~l~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D--------   74 (224)
T 1prx_A            4 GLLLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID--------   74 (224)
T ss_dssp             -CCTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------
T ss_pred             cCCCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCC--------
Confidence            356899999999999999 9999999998 4 5556689999999999999999999999999999999998        


Q ss_pred             ChHHHHHHHHHh----------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          159 SNPEIKEFACTR----------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       159 ~~~~~~~~~~~~----------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                      +.+.+++|+ ++          ++++||++.|.+   ..+.+.|+.+.....+..+. ....|++||||++|+|++.+.+
T Consensus        75 ~~~~~~~~~-~~i~~~~~~~~~~~~~fpil~D~~---~~va~~ygv~~~~~~~~~g~-~~~~p~~fiID~~G~I~~~~~~  149 (224)
T 1prx_A           75 SVEDHLAWS-KDINAYNSEEPTEKLPFPIIDDRN---RELAILLGMLDPAEKDEKGM-PVTARVVFVFGPDKKLKLSILY  149 (224)
T ss_dssp             CHHHHHHHH-HHHHHHTTSCCCSCCSSCEEECTT---CHHHHHTTSSCSCTTCSSSC-CTTCCEEEEECTTSBEEEEEEC
T ss_pred             CHHHHHHHH-HHHHHhhCcccccCcCcceeecCc---hHHHHHhCCCCcccccCCCc-cccceEEEEECCCCEEEEEEec
Confidence            778888888 44          789999996633   44667777543211110110 1235999999999999998754


Q ss_pred             CC----ChHHHHHHHHHHh
Q 026011          229 TT----SPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~~----~~~~l~~~l~~ll  243 (245)
                      ..    +.+++.+.|+.++
T Consensus       150 ~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          150 PATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             CTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHH
Confidence            32    5788888888775

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.93  E-value=7.9e-26  Score=177.61  Aligned_cols=146  Identities=13%  Similarity=0.078  Sum_probs=111.6

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCC-CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~-C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ..+.+|+.+|+|+++|.+|+.+++++++||++||+||++| |++|+.+++.|++++++   .+++||+|+.|        
T Consensus        16 ~~l~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D--------   84 (175)
T 1xvq_A           16 ELPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKD--------   84 (175)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESS--------
T ss_pred             CCCCcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECC--------
Confidence            3456899999999999999999999999999999999999 99999999999999998   56999999988        


Q ss_pred             ChHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC--CCChHHH
Q 026011          159 SNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP--TTSPFQI  235 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g--~~~~~~l  235 (245)
                      +.+.+++|+ +++++ +||++.|.+   ..+.+.|+....... ..+   .+.|++||||++|+|++++.|  ..+.+++
T Consensus        85 ~~~~~~~~~-~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~-~~g---~~~p~~~lid~~G~I~~~~~g~~~~~~~~~  156 (175)
T 1xvq_A           85 LPFAQKRFC-GAEGTENVMPASAFR---DSFGEDYGVTIADGP-MAG---LLARAIVVIGADGNVAYTELVPEIAQEPNY  156 (175)
T ss_dssp             CHHHHTTCC-------CEEEEECTT---SSHHHHTTCBBCSST-TTT---SBCSEEEEECTTSBEEEEEECSBTTCCCCH
T ss_pred             CHHHHHHHH-HHcCCCCceEeeCCH---HHHHHHhCCcccccc-cCC---cccceEEEECCCCeEEEEEECCCcCCCCCH
Confidence            788889998 78888 899996543   446666664332111 111   234999999999999999863  2344467


Q ss_pred             HHHHHHHhh
Q 026011          236 EKDIQKLVV  244 (245)
Q Consensus       236 ~~~l~~ll~  244 (245)
                      ++.|+.+.+
T Consensus       157 ~~~l~~l~~  165 (175)
T 1xvq_A          157 EAALAALGA  165 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777766643

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.93  E-value=3.7e-26  Score=188.39  Aligned_cols=144  Identities=15%  Similarity=0.186  Sum_probs=116.5

Q ss_pred             ccccccCcccCeEEEcC-C--CCeeecCCCCCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDI-D--GKDVPLSKFKGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~-~--G~~v~l~~~~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      ..+.+|+++|+|+++++ +  |++++|++++||++||+||+ +||++|+.+++.|++++++|+++|++||+||+|     
T Consensus        46 ~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D-----  120 (240)
T 3qpm_A           46 SKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVD-----  120 (240)
T ss_dssp             CSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESS-----
T ss_pred             CcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            45679999999998864 4  56999999999999999998 999999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+.+++|+ +++       +++||++.|.+   ..+.+.|+......|       ...|++||||++|+|++++.+
T Consensus       121 ---~~~~~~~~~-~~~~~~~~~~~~~fp~l~D~~---~~v~~~ygv~~~~~g-------~~~p~~flID~~G~I~~~~~~  186 (240)
T 3qpm_A          121 ---SQFTHLAWI-ITPRKQGGLGPMKIPLLSDLT---HQISKDYGVYLEDQG-------HTLRGLFIIDEKGVLRQITMN  186 (240)
T ss_dssp             ---CHHHHHHHH-HSCGGGTCCCSCSSCEEECTT---SHHHHHTTCEETTTT-------EECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHH-HHHHhhcCCCCCceeEEeCch---HHHHHHhCCccccCC-------CccceEEEEcCCCeEEEEEec
Confidence               788899998 565       78999996644   456677775432211       134999999999999988755


Q ss_pred             CC----ChHHHHHHHHHH
Q 026011          229 TT----SPFQIEKDIQKL  242 (245)
Q Consensus       229 ~~----~~~~l~~~l~~l  242 (245)
                      ..    +.+++.+.|+.+
T Consensus       187 ~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          187 DLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             CTTBCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            33    345666666654

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.93  E-value=1.3e-26  Score=179.84  Aligned_cols=133  Identities=16%  Similarity=0.134  Sum_probs=109.8

Q ss_pred             ccccCcccCeEEE--cCCC--CeeecCC-CCCCEEEEEEe-cCCCCCCh-HHHHHHHHHHHHhhhCCcE-EEEEecCCCC
Q 026011           82 AATEKSLYDFTVK--DIDG--KDVPLSK-FKGKVLLIVNV-ASRCGLTP-SNYSELSHLYEKYKTQGFE-ILAFPCNQFG  153 (245)
Q Consensus        82 ~~~g~~~pdf~l~--~~~G--~~v~l~~-~~gk~vll~F~-~t~C~~C~-~~~~~l~~l~~~~~~~g~~-vv~Vs~D~~~  153 (245)
                      +.+|+.+|+|+++  |.+|  ++++|++ ++||++||+|| ++||++|. .+++.|++++++|+++|++ ||+||.|   
T Consensus         4 ~~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d---   80 (162)
T 1tp9_A            4 IAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN---   80 (162)
T ss_dssp             CCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS---
T ss_pred             CCCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC---
Confidence            5689999999986  8999  9999999 89999999999 89999999 9999999999999999999 9999988   


Q ss_pred             CCCCCChHHHHHHHHHhcCC--CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          154 GQEPGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~--~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                           +.+.+++|+ +++++  +||++.|.+   ..+.+.|+.......  .|..+.+.|++|||| +|+|++.+.+.
T Consensus        81 -----~~~~~~~~~-~~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~--~g~~~~~~p~~~vid-~G~i~~~~~~~  146 (162)
T 1tp9_A           81 -----DPFVMKAWA-KSYPENKHVKFLADGS---ATYTHALGLELDLQE--KGLGTRSRRFALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             -----CHHHHHHHH-HTCTTCSSEEEEECTT---SHHHHHTTCEEEETT--TTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             -----CHHHHHHHH-HhcCCCCCeEEEECCC---chHHHHcCccccccc--CCCCccceeEEEEEE-CCEEEEEEeeC
Confidence                 788999999 88899  899996533   445666664322100  111123469999999 99999988765

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.93  E-value=6e-26  Score=178.09  Aligned_cols=149  Identities=16%  Similarity=0.136  Sum_probs=115.7

Q ss_pred             cccccccCcccCeEEE-cCCCCeeecCC-CCCCEEEE-EEecCCCCCCh-HHHHHHHHHHHHhhhCCcEEEE-EecCCCC
Q 026011           79 HATAATEKSLYDFTVK-DIDGKDVPLSK-FKGKVLLI-VNVASRCGLTP-SNYSELSHLYEKYKTQGFEILA-FPCNQFG  153 (245)
Q Consensus        79 ~~~~~~g~~~pdf~l~-~~~G~~v~l~~-~~gk~vll-~F~~t~C~~C~-~~~~~l~~l~~~~~~~g~~vv~-Vs~D~~~  153 (245)
                      ...+.+|+++|+|+++ +.+|++++|++ ++||++|| +||++|||+|. .+++.|++++++|+++|++||+ ||.|   
T Consensus        12 ~~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D---   88 (173)
T 3mng_A           12 SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN---   88 (173)
T ss_dssp             -CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS---
T ss_pred             CCCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCC---
Confidence            3556799999999999 99999999999 59996655 55699999999 5999999999999999999997 9988   


Q ss_pred             CCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccC-CCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          154 GQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                           +.+.+++|+ ++++++  ||++.|.+   ..+.+.|+....+.. +..| .....|++|||| ||+|++.+.+..
T Consensus        89 -----~~~~~~~f~-~~~~~~~~fp~l~D~~---~~va~~yGv~~~~~~~~~~g-~~~~~r~tfvID-dG~I~~~~v~~~  157 (173)
T 3mng_A           89 -----DAFVTGEWG-RAHKAEGKVRLLADPT---GAFGKETDLLLDDSLVSIFG-NRRLKRFSMVVQ-DGIVKALNVEPD  157 (173)
T ss_dssp             -----CHHHHHHHH-HHTTCTTTCEEEECTT---CHHHHHHTCBCCSTTHHHHS-SCCBCCEEEEEE-TTEEEEEEECTT
T ss_pred             -----CHHHHHHHH-HHhCCCCceEEEECCC---hHHHHHhCCCcccccccccC-CcceEEEEEEEE-CCEEEEEEEeCC
Confidence                 789999999 888888  99997643   456777876533110 0001 023349999999 999999887654


Q ss_pred             ----ChHHHHHHHHH
Q 026011          231 ----SPFQIEKDIQK  241 (245)
Q Consensus       231 ----~~~~l~~~l~~  241 (245)
                          +..+.++.|+.
T Consensus       158 ~~g~~~~~~~~vl~~  172 (173)
T 3mng_A          158 GTGLTCSLAPNIISQ  172 (173)
T ss_dssp             SSCSSTTSHHHHHHH
T ss_pred             CCCcchHHHHHHHHh
Confidence                34455555554

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.93  E-value=3.8e-25  Score=164.94  Aligned_cols=136  Identities=19%  Similarity=0.332  Sum_probs=114.4

Q ss_pred             cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF  166 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~  166 (245)
                      ++|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|+++++++++ ++.+++|..+..  ...++.+.+++|
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~v~i~~~~~--~~~~~~~~~~~~   77 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-DYVVLTVVSPGH--KGEQSEADFKNW   77 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT-TEEEEEEECTTS--TTCCCHHHHHHH
T ss_pred             CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC-CcEEEEEEcCCC--CchhhHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999654 599999965421  234688999999


Q ss_pred             HHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          167 ACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       167 ~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      + ++++. +|+++.|.+   ..+.+.|+             +.++|+++|||++|+|++++.|..+.+++.+.|+++
T Consensus        78 ~-~~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           78 Y-KGLDYKNLPVLVDPS---GKLLETYG-------------VRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             H-TTCCCTTCCEEECTT---CHHHHHTT-------------CCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             H-hhcCCCCeeEEECcc---hHHHHHcC-------------cccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            9 78888 899985432   23344443             566799999999999999999999999999998875

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.93  E-value=1.1e-25  Score=184.53  Aligned_cols=149  Identities=13%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCC-EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +.+|+.+|+|++++.+| +++|++++|| ++||+|| ++|||+|..+++.|++++++|+++|++||+||+|        +
T Consensus         3 l~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D--------~   73 (233)
T 2v2g_A            3 ITLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCD--------N   73 (233)
T ss_dssp             CCTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS--------C
T ss_pred             CCCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCC--------C
Confidence            46899999999999999 9999999998 9999998 9999999999999999999999999999999998        7


Q ss_pred             hHHHHHHHHH-----hc--CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC--
Q 026011          160 NPEIKEFACT-----RF--KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--  230 (245)
Q Consensus       160 ~~~~~~~~~~-----~~--~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--  230 (245)
                      .+.+++|+.+     ++  +++||++.|.+   ..+.+.|+.+........+. ....|++||||++|+|++.+.+..  
T Consensus        74 ~~~~~~~~~~i~~~~~~~~~~~fpil~D~~---~~va~~ygv~~~~~~~~~g~-~~~~p~~fiID~~G~I~~~~~~~~~~  149 (233)
T 2v2g_A           74 VADHKEWSEDVKCLSGVKGDMPYPIIADET---RELAVKLGMVDPDERTSTGM-PLTCRAVFIIGPDKKLKLSILYPATT  149 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSCSSCEEECTT---CHHHHHTTCEEEEEECTTCC-EEECEEEEEECTTSBEEEEEEECTTB
T ss_pred             HHHHHHHHHHHHHhhCcccCCceEEEECCh---HHHHHHhCCcCcccccCCCc-ccccceEEEECCCCEEEEEEecCCCC
Confidence            7888888832     56  88999996633   44667777543211000011 123599999999999998875432  


Q ss_pred             --ChHHHHHHHHHHh
Q 026011          231 --SPFQIEKDIQKLV  243 (245)
Q Consensus       231 --~~~~l~~~l~~ll  243 (245)
                        +.+++.+.|+.++
T Consensus       150 gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          150 GRNFSEILRVIDSLQ  164 (233)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence              5778888888775

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.93  E-value=4.6e-26  Score=180.49  Aligned_cols=147  Identities=15%  Similarity=0.092  Sum_probs=115.1

Q ss_pred             ccccccCcccCeEEEcC--CC-CeeecCC-CCCCEE-EEEEecCCCCCChH-HHHHHHHHHHHhhhCCcE-EEEEecCCC
Q 026011           80 ATAATEKSLYDFTVKDI--DG-KDVPLSK-FKGKVL-LIVNVASRCGLTPS-NYSELSHLYEKYKTQGFE-ILAFPCNQF  152 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~--~G-~~v~l~~-~~gk~v-ll~F~~t~C~~C~~-~~~~l~~l~~~~~~~g~~-vv~Vs~D~~  152 (245)
                      ..+++|+++|+|++++.  +| ++++|++ ++||++ |++||++|||+|.. +++.|++++++|+++|++ |++||.|  
T Consensus        24 ~~l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d--  101 (184)
T 3uma_A           24 MTIAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVN--  101 (184)
T ss_dssp             SCCCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS--
T ss_pred             CcCCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECC--
Confidence            44689999999999998  99 9999999 899955 55667999999999 799999999999999999 9999998  


Q ss_pred             CCCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          153 GGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                            +.+.+++|+ ++++++  ||++.|.+   ..+.+.|+.......  .|..+...|.+|||| ||+|++.+.+..
T Consensus       102 ------~~~~~~~f~-~~~~~~~~fp~l~D~~---~~va~~yGv~~~~~~--~g~g~~~~r~tfiId-dG~I~~~~~~~~  168 (184)
T 3uma_A          102 ------DLHVMGAWA-THSGGMGKIHFLSDWN---AAFTKAIGMEIDLSA--GTLGIRSKRYSMLVE-DGVVKALNIEES  168 (184)
T ss_dssp             ------CHHHHHHHH-HHHTCTTTSEEEECTT---CHHHHHTTCEEEEGG--GTCEEEECCEEEEEE-TTEEEEEEECSS
T ss_pred             ------CHHHHHHHH-HHhCCCCceEEEEcCc---hHHHHHcCCceeccc--cCCcccceeEEEEEC-CCEEEEEEEeCC
Confidence                  788999999 888998  99997644   456777775432210  011123448899997 999999986643


Q ss_pred             ----ChHHHHHHHHH
Q 026011          231 ----SPFQIEKDIQK  241 (245)
Q Consensus       231 ----~~~~l~~~l~~  241 (245)
                          +...+++.|++
T Consensus       169 ~g~~~~~~~~~vL~~  183 (184)
T 3uma_A          169 PGQATASGAAAMLEL  183 (184)
T ss_dssp             TTCCSTTSHHHHHHH
T ss_pred             CCCCcCCCHHHHHhh
Confidence                23455555544

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.93  E-value=1.2e-25  Score=173.35  Aligned_cols=135  Identities=16%  Similarity=0.282  Sum_probs=113.2

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ..+.+|+.+|+|++++.+|+.+++++++||++||+||++||++|+.+++.|+++++++++.++.+++|+.|        .
T Consensus        13 ~~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d--------~   84 (158)
T 3hdc_A           13 PLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVE--------K   84 (158)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECS--------S
T ss_pred             cccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCC--------H
Confidence            45679999999999999999999999999999999999999999999999999999999888999999987        2


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCCh--HHHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSP--FQIEK  237 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~--~~l~~  237 (245)
                        ++++|+ ++++++|+++.|.+   ..+.+.|+             +.++|++||||++|+|++++.|..+.  +++.+
T Consensus        85 --~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~  145 (158)
T 3hdc_A           85 --RFPEKY-RRAPVSFNFLSDAT---GQVQQRYG-------------ANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVS  145 (158)
T ss_dssp             --SCCGGG-GGCCCSCEEEECTT---SHHHHHTT-------------CCSSSEEEEECTTSBEEEEEESCCCTTSHHHHH
T ss_pred             --HHHHHH-HHcCCCceEEECch---HHHHHHhC-------------CCCcceEEEEcCCCCEEEEEeCCCccchHHHHH
Confidence              466777 78899999996533   23444444             56679999999999999999887643  45665


Q ss_pred             HHHH
Q 026011          238 DIQK  241 (245)
Q Consensus       238 ~l~~  241 (245)
                      .+++
T Consensus       146 ~~~~  149 (158)
T 3hdc_A          146 YLKS  149 (158)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5554

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.93  E-value=1.9e-25  Score=173.67  Aligned_cols=137  Identities=18%  Similarity=0.225  Sum_probs=115.5

Q ss_pred             ccccccCcccCeEEEcC--CCCeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDI--DGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~--~G~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      ..+.+|+.+|+|++++.  +|+.+.++++ +||++||+||++||++|+.+++.|++++++    ++++++|++|      
T Consensus        20 ~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~------   89 (168)
T 2b1k_A           20 ESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYK------   89 (168)
T ss_dssp             CCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEES------
T ss_pred             cccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEECC------
Confidence            45679999999999999  9999999885 999999999999999999999999998875    6999999987      


Q ss_pred             CCChHHHHHHHHHhcCCCcce-eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHH
Q 026011          157 PGSNPEIKEFACTRFKAEFPI-FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI  235 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~p~-~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l  235 (245)
                       ++.+.+++|+ ++++++|+. +.|.  + ..+...|+             |.++|++||||++|++++++.|..+.+++
T Consensus        90 -~~~~~~~~~~-~~~~~~~~~~~~d~--~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~l  151 (168)
T 2b1k_A           90 -DDRQKAISWL-KELGNPYALSLFDG--D-GMLGLDLG-------------VYGAPETFLIDGNGIIRYRHAGDLNPRVW  151 (168)
T ss_dssp             -CCHHHHHHHH-HHHCCCCSEEEEET--T-CHHHHHHT-------------CCSSSEEEEECTTSBEEEEEESCCCHHHH
T ss_pred             -CChHHHHHHH-HHcCCCCceeeECc--c-hHHHHHcC-------------ccccCEEEEECCCCeEEEEEeCCCCHHHH
Confidence             3788899998 888999984 4332  2 22333443             56669999999999999999998899999


Q ss_pred             HHHHHHHhh
Q 026011          236 EKDIQKLVV  244 (245)
Q Consensus       236 ~~~l~~ll~  244 (245)
                      .+.|+++++
T Consensus       152 ~~~l~~~l~  160 (168)
T 2b1k_A          152 EEEIKPLWE  160 (168)
T ss_dssp             HHTTHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888764

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.92  E-value=8.8e-26  Score=176.24  Aligned_cols=133  Identities=12%  Similarity=0.118  Sum_probs=107.9

Q ss_pred             ccccCcccCeEEE-cCCCCeeecCCC-CCCEEEEEEe-cCCCCCChH-HHHHHHHHHHHhhhCCc-EEEEEecCCCCCCC
Q 026011           82 AATEKSLYDFTVK-DIDGKDVPLSKF-KGKVLLIVNV-ASRCGLTPS-NYSELSHLYEKYKTQGF-EILAFPCNQFGGQE  156 (245)
Q Consensus        82 ~~~g~~~pdf~l~-~~~G~~v~l~~~-~gk~vll~F~-~t~C~~C~~-~~~~l~~l~~~~~~~g~-~vv~Vs~D~~~~~~  156 (245)
                      +.+|+.+|+|+++ |.+|++++|+++ +||++||+|| ++|||+|.. ++|.|++++++|+++|+ +||+||.|      
T Consensus         3 l~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d------   76 (167)
T 2wfc_A            3 IKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVN------   76 (167)
T ss_dssp             CCTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESS------
T ss_pred             CCCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCC------
Confidence            4689999999999 999999999998 9998888886 999999999 99999999999999999 99999988      


Q ss_pred             CCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          157 PGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                        +.+.+++|+ ++++++  ||++.|.+   ..+.+.|+....... ..| .....|++||| ++|+|++.+.+.
T Consensus        77 --~~~~~~~~~-~~~~~~~~fp~l~D~~---~~~~~~~gv~~~~~~-~~g-~~~~~p~t~lI-~~G~I~~~~~~~  142 (167)
T 2wfc_A           77 --DSFVMDAWG-KAHGADDKVQMLADPG---GAFTKAVDMELDLSA-VLG-NVRSKRYSLVI-EDGVVTKVNVEP  142 (167)
T ss_dssp             --CHHHHHHHH-HHTTCTTTSEEEECTT---SHHHHHTTCEECCHH-HHS-SCEECCEEEEE-ETTEEEEEEECT
T ss_pred             --CHHHHHHHH-HhcCCCcceEEEECCC---CcHHHHcCCcccccc-ccC-cccceEEEEEE-eCCEEEEEEecC
Confidence              788999999 788998  99996633   445666664321000 000 02234999999 999999987654

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.92  E-value=2e-25  Score=181.74  Aligned_cols=149  Identities=17%  Similarity=0.210  Sum_probs=116.6

Q ss_pred             ccccCcccCeEEEcC--CCCeeecCCCCCC-EEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDI--DGKDVPLSKFKGK-VLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~--~G~~v~l~~~~gk-~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      +.+|+.+|+|++++.  +| +++|++++|| ++|| +||++||++|..+++.|++++++|+++|++||+||+|       
T Consensus         3 l~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D-------   74 (220)
T 1xcc_A            3 YHLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCN-------   74 (220)
T ss_dssp             CCTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESS-------
T ss_pred             CCCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-------
Confidence            468999999999999  99 9999999998 5544 5589999999999999999999999999999999998       


Q ss_pred             CChHHHHHHHH------HhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC--
Q 026011          158 GSNPEIKEFAC------TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--  229 (245)
Q Consensus       158 ~~~~~~~~~~~------~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~--  229 (245)
                       +.+.+++|..      .+++++||++.|.+   ..+.+.|+.+........+. ....|++||||++|+|++.+.+.  
T Consensus        75 -~~~~~~~~~~~i~~~~~~~~~~fpil~D~~---~~va~~ygv~~~~~~~~~g~-~~~~p~~flID~~G~I~~~~~~~~~  149 (220)
T 1xcc_A           75 -SKESHDKWIEDIKYYGKLNKWEIPIVCDES---RELANKLKIMDEQEKDITGL-PLTCRCLFFISPEKKIKATVLYPAT  149 (220)
T ss_dssp             -CHHHHHHHHHHHHHHHTCSCCCCCEEECTT---SHHHHHHTCEEEEEECTTSC-EEECEEEEEECTTSBEEEEEEECTT
T ss_pred             -CHHHHHHHHHHHHHHhcCCCCcceeEECch---hHHHHHhCCCCcccccCCCC-CcccceEEEECCCCEEEEEEecCCC
Confidence             6777888873      15789999996633   44677777643221000010 12359999999999999887532  


Q ss_pred             --CChHHHHHHHHHHh
Q 026011          230 --TSPFQIEKDIQKLV  243 (245)
Q Consensus       230 --~~~~~l~~~l~~ll  243 (245)
                        .+.+++.+.|+.++
T Consensus       150 ~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          150 TGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             BCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence              36788888888775

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.92  E-value=1.4e-25  Score=173.30  Aligned_cols=140  Identities=16%  Similarity=0.148  Sum_probs=116.3

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      .|..+|  +++|.+|+.+++.+++||++||+||++||++|+.+++.|++++++|++.|++||+|++|..  ...++.+.+
T Consensus        16 ~~~~~p--~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~--~~~~~~~~~   91 (164)
T 2h30_A           16 VPHTMS--TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGF--LHEKKDGEF   91 (164)
T ss_dssp             HHHHHT--TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTS--TTCCCTTHH
T ss_pred             cCCcCC--ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCC--ccccCHHHH
Confidence            455666  7889999999999999999999999999999999999999999999988999999999743  234567788


Q ss_pred             HHHHHHhcCCC-cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          164 KEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       164 ~~~~~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      .+|. ++++++ +++..|.  + ..+.+.|+             |.++|++||||++|++++++.|..+.+++.+.|+++
T Consensus        92 ~~~~-~~~~~~~~~~~~d~--~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~  154 (164)
T 2h30_A           92 QKWY-AGLNYPKLPVVTDN--G-GTIAQNLN-------------ISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP  154 (164)
T ss_dssp             HHHH-TTSCCTTSCEEECT--T-CHHHHHTT-------------CCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             HHHH-HhCCCCcceEEEcC--c-hHHHHHcC-------------CCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            8988 677776 7777432  2 23344443             566799999999999999999988999999999987


Q ss_pred             hh
Q 026011          243 VV  244 (245)
Q Consensus       243 l~  244 (245)
                      ++
T Consensus       155 ~~  156 (164)
T 2h30_A          155 NA  156 (164)
T ss_dssp             TC
T ss_pred             HH
Confidence            64

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=7.4e-27  Score=180.07  Aligned_cols=140  Identities=20%  Similarity=0.309  Sum_probs=115.2

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHH-HHHHhh-hCCcEEEEEecCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSH-LYEKYK-TQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~-l~~~~~-~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+.+|+.+|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|++ ++++++ +.++++++|++|.       
T Consensus         6 ~l~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~-------   78 (159)
T 2ls5_A            6 IVRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDE-------   78 (159)
Confidence            4568999999999999999999999999999999999999999999999998 999998 6789999999882       


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      +.+.+++|. ++++++||++.|.+   ..+.+.|+.           .+.++|++||||++|+|++++.|. +++++++.
T Consensus        79 ~~~~~~~~~-~~~~~~~~~~~d~~---~~~~~~~~~-----------~~~~~P~~~lid~~G~i~~~~~g~-~~~~l~~~  142 (159)
T 2ls5_A           79 PLEKVLAFA-KSTGVTYPLGLDPG---ADIFAKYAL-----------RDAGITRNVLIDREGKIVKLTRLY-NEEEFASL  142 (159)
Confidence            456788888 78899999996533   334444442           123359999999999999998874 56677777


Q ss_pred             HHHHh
Q 026011          239 IQKLV  243 (245)
Q Consensus       239 l~~ll  243 (245)
                      |+++.
T Consensus       143 l~~l~  147 (159)
T 2ls5_A          143 VQQIN  147 (159)
Confidence            76654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.92  E-value=4.2e-25  Score=169.17  Aligned_cols=137  Identities=18%  Similarity=0.252  Sum_probs=113.0

Q ss_pred             cccccCcccCeEEEcCCC--------CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCC
Q 026011           81 TAATEKSLYDFTVKDIDG--------KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQF  152 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G--------~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~  152 (245)
                      ...+|..+|+|++++.+|        +.+++++++||++||+||++||++|+.+++.|++++++   .++.+++|++|  
T Consensus         7 ~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~~--   81 (156)
T 1kng_A            7 SALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---KRFQLVGINYK--   81 (156)
T ss_dssp             -----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---TTSEEEEEEES--
T ss_pred             hHHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---CCeEEEEEECC--
Confidence            456899999999999999        99999999999999999999999999999999999876   34999999988  


Q ss_pred             CCCCCCChHHHHHHHHHhcCCCcc-eeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 026011          153 GGQEPGSNPEIKEFACTRFKAEFP-IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS  231 (245)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~  231 (245)
                           ++.+.+++|+ ++++++|+ ++.|.  . ..+...|+             +..+|++||||++|+++.++.|..+
T Consensus        82 -----~~~~~~~~~~-~~~~~~~~~~~~d~--~-~~~~~~~~-------------v~~~P~~~~id~~G~i~~~~~g~~~  139 (156)
T 1kng_A           82 -----DAADNARRFL-GRYGNPFGRVGVDA--N-GRASIEWG-------------VYGVPETFVVGREGTIVYKLVGPIT  139 (156)
T ss_dssp             -----CCHHHHHHHH-HHHCCCCSEEEEET--T-SHHHHHTT-------------CCSSCEEEEECTTSBEEEEEESCCC
T ss_pred             -----CCHHHHHHHH-HHcCCCCceeeeCc--h-hHHHHhcC-------------cCccCeEEEEcCCCCEEEEEeCCCC
Confidence                 3788999998 88899999 55332  2 22333333             5667999999999999999999989


Q ss_pred             hHHHHHHHHHHhh
Q 026011          232 PFQIEKDIQKLVV  244 (245)
Q Consensus       232 ~~~l~~~l~~ll~  244 (245)
                      .+++.+.|+++++
T Consensus       140 ~~~l~~~l~~~l~  152 (156)
T 1kng_A          140 PDNLRSVLLPQME  152 (156)
T ss_dssp             HHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888875

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.92  E-value=7.3e-25  Score=181.03  Aligned_cols=144  Identities=15%  Similarity=0.226  Sum_probs=117.5

Q ss_pred             ccccCcccCeEEEcCCCCeeec-CCC--CCCEE-EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPL-SKF--KGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l-~~~--~gk~v-ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      +.+|+.+|+|++.+.+| +++| +++  +||++ |++||++||++|..+++.|++++++|+++|++||+||+|       
T Consensus         5 ~~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~D-------   76 (249)
T 3a2v_A            5 PLIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVD-------   76 (249)
T ss_dssp             CCTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS-------
T ss_pred             CCCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECC-------
Confidence            46899999999999999 8999 999  99965 557889999999999999999999999999999999998       


Q ss_pred             CChHHHHHHHHH-----hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC--
Q 026011          158 GSNPEIKEFACT-----RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--  230 (245)
Q Consensus       158 ~~~~~~~~~~~~-----~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--  230 (245)
                       +.+.+.+|..+     .++++||++.|.+   ..+.+.|+++....+      +..+|++||||++|+|++.+.+..  
T Consensus        77 -s~~~~~~w~~~~~~~~~~~i~fPil~D~~---~~ia~~ygv~~~~~g------~~~~p~~fIID~dG~I~~~~~~~~~~  146 (249)
T 3a2v_A           77 -SVFSHIKWKEWIERHIGVRIPFPIIADPQ---GTVARRLGLLHAESA------THTVRGVFIVDARGVIRTMLYYPMEL  146 (249)
T ss_dssp             -CHHHHHHHHHHHHHHTCCCCCSCEEECTT---SHHHHHHTCCCTTCS------SSCCEEEEEECTTSBEEEEEEECTTB
T ss_pred             -CHHHHHHHHHHHHHhcCCCCceeEEECCc---hHHHHHhCCccccCC------CcccceEEEECCCCeEEEEEecCCcc
Confidence             77778888732     2578999996633   446777775432221      234599999999999999876554  


Q ss_pred             --ChHHHHHHHHHHh
Q 026011          231 --SPFQIEKDIQKLV  243 (245)
Q Consensus       231 --~~~~l~~~l~~ll  243 (245)
                        +.+++.+.|+.++
T Consensus       147 gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          147 GRLVDEILRIVKALK  161 (249)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHH
Confidence              5788888888875

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.91  E-value=4.9e-24  Score=172.77  Aligned_cols=145  Identities=15%  Similarity=0.098  Sum_probs=115.6

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCC-CCCCh-----HHHHHHHHHHHHhhhCCcEEEEEecCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTP-----SNYSELSHLYEKYKTQGFEILAFPCNQFG  153 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~-C~~C~-----~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~  153 (245)
                      ..+.+|+++|+|+|+|.+|++++|++++||++||+||.+| ||+|.     .+++.|+++   |  +|++||+||.|   
T Consensus        20 ~~l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~D---   91 (224)
T 3keb_A           20 DFPRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVD---   91 (224)
T ss_dssp             CCCCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESS---
T ss_pred             CcCCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECC---
Confidence            3467999999999999999999999999999999999877 99999     888888887   5  67999999988   


Q ss_pred             CCCCCChHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC----
Q 026011          154 GQEPGSNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP----  228 (245)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g----  228 (245)
                           +++.+++|+ +++++ +||+++|.+  ...+.+.|++..... ...|   ...|++||||++|+|++.+..    
T Consensus        92 -----s~~~~~~f~-~~~gl~~fplLsD~~--~~~vak~yGv~~~~~-~~~G---~~~p~tfvID~dG~I~~~~~~~~~~  159 (224)
T 3keb_A           92 -----SPSSLARAR-HEHGLPNIALLSTLR--GRDFHKRYGVLITEY-PLSG---YTSPAIILADAANVVHYSERLANTR  159 (224)
T ss_dssp             -----CHHHHHHHH-HHHCCTTCEEEESTT--CTTHHHHTTCBCCST-TSTT---CBCCEEEEECTTCBEEEEEECSBTT
T ss_pred             -----CHHHHHHHH-HHcCCCCceEEEcCC--chHHHHHhCCccccc-cccC---CccCEEEEEcCCCEEEEEEecCCCC
Confidence                 889999999 78898 699996642  245777787654321 1111   124999999999999987632    


Q ss_pred             -CCChHHHHHHHHHHhh
Q 026011          229 -TTSPFQIEKDIQKLVV  244 (245)
Q Consensus       229 -~~~~~~l~~~l~~ll~  244 (245)
                       ..+.+++.+.|+.+.+
T Consensus       160 ~~pd~~evl~~L~~l~~  176 (224)
T 3keb_A          160 DFFDFDAIEKLLQEGEQ  176 (224)
T ss_dssp             CCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhh
Confidence             3467788888877653

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.91  E-value=1.4e-24  Score=170.03  Aligned_cols=134  Identities=14%  Similarity=0.216  Sum_probs=104.5

Q ss_pred             ccccCcccCeEEEcC----CC-----CeeecCCC-CCC-EEEEEEecCCCCCChHH-HHHHHHHHHHhhhCCcE-EEEEe
Q 026011           82 AATEKSLYDFTVKDI----DG-----KDVPLSKF-KGK-VLLIVNVASRCGLTPSN-YSELSHLYEKYKTQGFE-ILAFP  148 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~----~G-----~~v~l~~~-~gk-~vll~F~~t~C~~C~~~-~~~l~~l~~~~~~~g~~-vv~Vs  148 (245)
                      ..+|+++|+|++++.    +|     ++++|+++ +|| +||++||++|||+|..+ ++.|++++++|+++|++ |++||
T Consensus         7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is   86 (171)
T 2pwj_A            7 TDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVA   86 (171)
T ss_dssp             ---CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEE
T ss_pred             ccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            346779999999998    57     89999996 997 66778999999999999 99999999999999999 99999


Q ss_pred             cCCCCCCCCCChHHHHHHHHHhcCC--CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          149 CNQFGGQEPGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       149 ~D~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                      .|        +.+.+++|+ +++++  +||++.|.+   ..+.+.|+.......  .+..+...|++|||| +|+|++.+
T Consensus        87 ~d--------~~~~~~~~~-~~~~~~~~fp~l~D~~---~~~~~~ygv~~~~~~--~~~g~~~~~~t~~I~-~G~I~~~~  151 (171)
T 2pwj_A           87 IN--------DPYTVNAWA-EKIQAKDAIEFYGDFD---GSFHKSLELTTDLSA--GLLGIRSERWSAYVV-DGKVKALN  151 (171)
T ss_dssp             SS--------CHHHHHHHH-HHTTCTTTSEEEECTT---CHHHHHHTCEEECTT--TTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             CC--------CHHHHHHHH-HHhCCCCceEEEECCc---cHHHHHhCCcccccc--ccCCcccceeEEEEE-CCEEEEEE
Confidence            88        788899999 78885  799996643   446677775422110  011123347899999 99999988


Q ss_pred             CCCC
Q 026011          227 PPTT  230 (245)
Q Consensus       227 ~g~~  230 (245)
                      .+..
T Consensus       152 ~~~~  155 (171)
T 2pwj_A          152 VEES  155 (171)
T ss_dssp             ECSS
T ss_pred             eecC
Confidence            7653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.90  E-value=3.7e-24  Score=176.35  Aligned_cols=134  Identities=19%  Similarity=0.208  Sum_probs=109.2

Q ss_pred             ccccCcccCeEEEcC-CCC--eeecCC-CCCCEEEEEEe-cCCCCCCh-HHHHHHHHHHHHhhhCCc-EEEEEecCCCCC
Q 026011           82 AATEKSLYDFTVKDI-DGK--DVPLSK-FKGKVLLIVNV-ASRCGLTP-SNYSELSHLYEKYKTQGF-EILAFPCNQFGG  154 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~-~G~--~v~l~~-~~gk~vll~F~-~t~C~~C~-~~~~~l~~l~~~~~~~g~-~vv~Vs~D~~~~  154 (245)
                      +.+|+++|+|++++. +|+  +++|++ ++||++||+|| ++|||+|. .+++.|++++++|+++|+ +|++||.|    
T Consensus         3 ~~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d----   78 (241)
T 1nm3_A            3 SMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN----   78 (241)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS----
T ss_pred             ccCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcC----
Confidence            468999999999996 777  899999 89999999999 99999999 999999999999999999 99999988    


Q ss_pred             CCCCChHHHHHHHHHhcCCC-cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          155 QEPGSNPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                          +.+.+++|+ ++++++ ||++.|.+   ..+.+.|+......  ..|......|++||| ++|+|++.+.|..
T Consensus        79 ----~~~~~~~~~-~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~--~~g~~~~~~p~t~li-~~G~i~~~~~~~~  144 (241)
T 1nm3_A           79 ----DTFVMNAWK-EDEKSENISFIPDGN---GEFTEGMGMLVGKE--DLGFGKRSWRYSMLV-KNGVVEKMFIEPN  144 (241)
T ss_dssp             ----CHHHHHHHH-HHTTCTTSEEEECTT---SHHHHHTTCEEECT--TTTCCEEECCEEEEE-ETTEEEEEEECCS
T ss_pred             ----CHHHHHHHH-HhcCCCceEEEECCC---cHHHHHhCceeecc--cccCcccceeEEEEE-ECCEEEEEEEecc
Confidence                788999999 788886 99996643   44566676433211  011111244899999 9999999887753

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.89  E-value=3.2e-23  Score=177.63  Aligned_cols=133  Identities=14%  Similarity=0.242  Sum_probs=108.8

Q ss_pred             CcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011           86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        86 ~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      .++|+|+|+|.+|++++|+||+||+|||+|| ..|||.|..+++.|++    ...+|++||+||.|        +.+.++
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~~~v~gis~D--------~~~~~~   69 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEKAQVVGISRD--------SVEALK   69 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTTEEEEEEESC--------CHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCCCEEEEEeCC--------CHHHHH
Confidence            3789999999999999999999999999999 7899999999988864    23346999999988        899999


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---ChHHHHHHHHH
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---SPFQIEKDIQK  241 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---~~~~l~~~l~~  241 (245)
                      +|+ ++++++||++.|.+   ..+.+.|+++..  +       ...|++||||++|+|++.+.+..   +.+++.+.|++
T Consensus        70 ~f~-~~~~l~fp~l~D~~---~~v~~~ygv~~~--~-------~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~  136 (322)
T 4eo3_A           70 RFK-EKNDLKVTLLSDPE---GILHEFFNVLEN--G-------KTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDR  136 (322)
T ss_dssp             HHH-HHHTCCSEEEECTT---CHHHHHTTCEET--T-------EECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHH
T ss_pred             HHH-HhhCCceEEEEcCc---hHHHHhcCCCCC--C-------cCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhh
Confidence            999 89999999997644   457778876532  1       12399999999999998886554   44677777776


Q ss_pred             Hh
Q 026011          242 LV  243 (245)
Q Consensus       242 ll  243 (245)
                      ++
T Consensus       137 ~~  138 (322)
T 4eo3_A          137 LI  138 (322)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.89  E-value=2.2e-23  Score=157.86  Aligned_cols=121  Identities=18%  Similarity=0.248  Sum_probs=97.1

Q ss_pred             ccCcccC-eEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCCCChH
Q 026011           84 TEKSLYD-FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        84 ~g~~~pd-f~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      .++.+|+ |++++.+|+.+++++++||++||+||++||++|+.+++.|+++++++++ .+++|++|++|       ++.+
T Consensus         3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d-------~~~~   75 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWD-------ESAE   75 (144)
T ss_dssp             TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSHH
T ss_pred             hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCC-------CCHH
Confidence            5788999 9999999999999999999999999999999999999999999999985 57999999998       3678


Q ss_pred             HHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEEC-CCCcEEEecC
Q 026011          162 EIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVD-KNGKVIERYP  227 (245)
Q Consensus       162 ~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD-~~G~i~~~~~  227 (245)
                      .+++|+ ++++. .+|+... + ....+.+.|+             |..+|+++||| ++|+|++++.
T Consensus        76 ~~~~~~-~~~~~~~~~~~~~-d-~~~~~~~~~~-------------v~~~P~~~lid~~~G~i~~~~~  127 (144)
T 1i5g_A           76 DFKDYY-AKMPWLALPFEDR-K-GMEFLTTGFD-------------VKSIPTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             HHHHHH-TTCSSEECCTTCH-H-HHHHHHHHTT-------------CCSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHH-HhCCccccccCch-H-HHHHHHHHcC-------------CCCCCEEEEEECCCCcEEeccc
Confidence            899998 66552 4444310 1 0011222232             56679999999 9999988763

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.81  E-value=1.4e-24  Score=163.88  Aligned_cols=122  Identities=14%  Similarity=0.180  Sum_probs=99.5

Q ss_pred             CcccCeEEEcCCCCeeecCC-CCCC-EEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChH
Q 026011           86 KSLYDFTVKDIDGKDVPLSK-FKGK-VLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        86 ~~~pdf~l~~~~G~~v~l~~-~~gk-~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      +.+|+|++++.+|+.+++++ ++|| ++||+||++||++|+.+++.|+++++++++  .++++++|++|       ++.+
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d-------~~~~   74 (143)
T 2lus_A            2 EFIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSD-------RSED   74 (143)
Confidence            35899999999999999999 9999 999999999999999999999999999953  46999999998       2567


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                      .+++|+ ++++++|+.+.........+.+.|+             |.++|+++|||++|+|+++..+
T Consensus        75 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A           75 DMFQYM-MESHGDWLAIPYRSGPASNVTAKYG-------------ITGIPALVIVKKDGTLISMNGR  127 (143)
Confidence            888898 7888887765322222233444454             5666999999999999988643

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.88  E-value=7.4e-24  Score=164.81  Aligned_cols=124  Identities=15%  Similarity=0.224  Sum_probs=97.5

Q ss_pred             ccccccCcccCe-EEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCC
Q 026011           80 ATAATEKSLYDF-TVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        80 ~~~~~g~~~pdf-~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~  157 (245)
                      +...+|+.+|+| ++++.+| .++|++++||++||+||++||++|+.++|.|++++++|++ .+++||+|++|       
T Consensus        20 ~~~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d-------   91 (165)
T 3s9f_A           20 HMSGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWD-------   91 (165)
T ss_dssp             --CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------
T ss_pred             hhhhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecC-------
Confidence            445689999999 9999999 9999999999999999999999999999999999999987 67999999998       


Q ss_pred             CChHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecC
Q 026011          158 GSNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYP  227 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~  227 (245)
                      ++.+++++|+ ++++. .+|+..+.  ....+.+.|+             |..+|++||||++ |+|+++..
T Consensus        92 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~-------------v~~~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A           92 EEEDDFNAYY-AKMPWLSIPFANRN--IVEALTKKYS-------------VESIPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             CSHHHHHHHH-TTCSSEECCTTCHH--HHHHHHHHTT-------------CCSSSEEEEEETTTCCEEESCH
T ss_pred             CCHHHHHHHH-HhCCCcccccCchh--HHHHHHHHcC-------------CCCCCEEEEEeCCCCEEEeccc
Confidence            3678899998 55442 33333110  0011222232             6667999999998 99988764

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.87  E-value=8.8e-23  Score=155.02  Aligned_cols=121  Identities=17%  Similarity=0.288  Sum_probs=96.7

Q ss_pred             cccCcccC-eEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCCCCh
Q 026011           83 ATEKSLYD-FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        83 ~~g~~~pd-f~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ..|+.+|+ |+++|.+| .+++++++||++||+||++||++|+.+++.|+++++++++ .+++|++|++|       ++.
T Consensus         3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d-------~~~   74 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWD-------EEE   74 (146)
T ss_dssp             CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------CSH
T ss_pred             chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCC-------CCH
Confidence            46788999 99999999 9999999999999999999999999999999999999984 67999999998       367


Q ss_pred             HHHHHHHHHhcC-CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEEC-CCCcEEEecC
Q 026011          161 PEIKEFACTRFK-AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVD-KNGKVIERYP  227 (245)
Q Consensus       161 ~~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD-~~G~i~~~~~  227 (245)
                      +.+++|+ ++++ ..+|+... | ....+.+.|+             |..+|+++||| ++|+|++++.
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~~-d-~~~~~~~~~~-------------v~~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A           75 DGFAGYF-AKMPWLAVPFAQS-E-AVQKLSKHFN-------------VESIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             HHHHHHH-TTCSSEECCGGGH-H-HHHHHHHHTT-------------CCSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHHH-HHCCceeeccchh-h-HHHHHHHHhC-------------CCCCCEEEEEECCCCeEEEecc
Confidence            8899998 5654 24554410 1 0011222232             56679999999 9999988764

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.86  E-value=4.9e-22  Score=155.25  Aligned_cols=134  Identities=9%  Similarity=0.063  Sum_probs=107.6

Q ss_pred             cccccCcccCeEEEcCCC----------CeeecCCC-CCCEE-EEEEecCCCCCChH-HHHHHHHHHHHhhhCCc-EEEE
Q 026011           81 TAATEKSLYDFTVKDIDG----------KDVPLSKF-KGKVL-LIVNVASRCGLTPS-NYSELSHLYEKYKTQGF-EILA  146 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G----------~~v~l~~~-~gk~v-ll~F~~t~C~~C~~-~~~~l~~l~~~~~~~g~-~vv~  146 (245)
                      ..++|+++|++++....+          ++++|+++ +||++ |++||++|||+|.. +++.|++.+++|+++|+ +|++
T Consensus         9 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vig   88 (176)
T 4f82_A            9 MIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWC   88 (176)
T ss_dssp             CCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            467999999988887543          67899997 99965 55667999999999 99999999999999999 9999


Q ss_pred             EecCCCCCCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEE
Q 026011          147 FPCNQFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE  224 (245)
Q Consensus       147 Vs~D~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~  224 (245)
                      ||.|        +++.+++|. ++++++  ||+++|.+   ..+.+.|+.......  .|..+...|.+||| ++|+|++
T Consensus        89 IS~D--------~~~~~~~f~-~~~~l~~~f~lLsD~~---~~va~ayGv~~~~~~--~G~g~~s~R~tfII-~dG~I~~  153 (176)
T 4f82_A           89 VSVN--------DAFVMGAWG-RDLHTAGKVRMMADGS---AAFTHALGLTQDLSA--RGMGIRSLRYAMVI-DGGVVKT  153 (176)
T ss_dssp             EESS--------CHHHHHHHH-HHTTCTTTSEEEECTT---CHHHHHHTCEEECGG--GTCCEEECCEEEEE-ETTEEEE
T ss_pred             EeCC--------CHHHHHHHH-HHhCCCCCceEEEcCc---hHHHHHhCCCccccc--cCCCcccccEEEEE-cCCEEEE
Confidence            9998        899999999 788888  99997643   557788886543210  11113344889999 9999998


Q ss_pred             ecCCC
Q 026011          225 RYPPT  229 (245)
Q Consensus       225 ~~~g~  229 (245)
                      .+.+.
T Consensus       154 ~~~~~  158 (176)
T 4f82_A          154 LAVEA  158 (176)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            88654

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.86  E-value=2e-21  Score=151.53  Aligned_cols=135  Identities=14%  Similarity=0.203  Sum_probs=108.7

Q ss_pred             ccccccCcccCeEEEcCCC-CeeecCC-CCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcE-EEEEecCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDG-KDVPLSK-FKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFE-ILAFPCNQFGGQ  155 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G-~~v~l~~-~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~-vv~Vs~D~~~~~  155 (245)
                      .+.++|+++|+|++++.++ ++++|++ ++||++||+|| ..|||.|..+++.+++.+++|+++|++ |++||.|     
T Consensus        12 ~~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D-----   86 (171)
T 2xhf_A           12 SPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVN-----   86 (171)
T ss_dssp             CCCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESS-----
T ss_pred             CcccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCC-----
Confidence            4567999999999995332 8999999 59999888887 899999999999999999999999996 9999998     


Q ss_pred             CCCChHHHHHHHHHhcCC--CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          156 EPGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~--~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                         +...+++|. +++++  +||+++|.+   ..+.+.|+++.....  .|......+.+|||| +|+|++.+...
T Consensus        87 ---~~~~~~~w~-~~~~~~~~f~lLSD~~---~~~a~ayGv~~~~~~--~g~g~~~~R~tfvId-dG~V~~~~v~~  152 (171)
T 2xhf_A           87 ---DPFVMAAWG-KTVDPEHKIRMLADMH---GEFTRALGTELDSSK--MLGNNRSRRYAMLID-DNKIRSVSTEP  152 (171)
T ss_dssp             ---CHHHHHHHH-HHHCTTCCSEEEECTT---SHHHHHHTCBCCCHH--HHSSCCBCCEEEEEE-TTEEEEEEETT
T ss_pred             ---CHHHHHHHH-HhcCCCCCeEEEEeCC---chHHHHhCCceeccc--cCCCcceEEEEEEEe-CCEEEEEEEeC
Confidence               899999999 77788  899997744   557888886543210  000122337899999 99999888654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.86  E-value=1.2e-22  Score=153.60  Aligned_cols=121  Identities=17%  Similarity=0.288  Sum_probs=95.3

Q ss_pred             cccCcccCe-EEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhh-hCCcEEEEEecCCCCCCCCCCh
Q 026011           83 ATEKSLYDF-TVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        83 ~~g~~~pdf-~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ..|+.+|+| +++|.+| .+++++++||++||+||++||++|+.+++.|++++++++ +.+++|++|++|       ++.
T Consensus         3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d-------~~~   74 (144)
T 1o73_A            3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWD-------ENE   74 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSH
T ss_pred             chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCC-------CCH
Confidence            478899997 9999999 999999999999999999999999999999999999998 457999999998       367


Q ss_pred             HHHHHHHHHhcC-CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEEC-CCCcEEEecC
Q 026011          161 PEIKEFACTRFK-AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVD-KNGKVIERYP  227 (245)
Q Consensus       161 ~~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD-~~G~i~~~~~  227 (245)
                      +++++|+ ++++ ..+|+... + ....+.+.|+             |..+|+++||| ++|+|+++..
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~-------------v~~~Pt~~lid~~~G~i~~~~~  127 (144)
T 1o73_A           75 SDFHDYY-GKMPWLALPFDQR-S-TVSELGKTFG-------------VESIPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             HHHHHHH-TTCSSEECCTTCH-H-HHHHHHHHHT-------------CCSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHHH-HhCCceEeeccch-h-HHHHHHHHcC-------------CCCCCEEEEEECCCCeEEecch
Confidence            7888988 5544 23333210 0 0011222232             56679999999 8999988763

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.85  E-value=3.1e-21  Score=152.10  Aligned_cols=130  Identities=10%  Similarity=0.134  Sum_probs=104.2

Q ss_pred             cccCcccCeEEEc--C---------CC----CeeecCC-CCCCEEEEEEe-cCCCCCCh-HHHHHHHHHHHHh-hhCCcE
Q 026011           83 ATEKSLYDFTVKD--I---------DG----KDVPLSK-FKGKVLLIVNV-ASRCGLTP-SNYSELSHLYEKY-KTQGFE  143 (245)
Q Consensus        83 ~~g~~~pdf~l~~--~---------~G----~~v~l~~-~~gk~vll~F~-~t~C~~C~-~~~~~l~~l~~~~-~~~g~~  143 (245)
                      ++|+++|+|++++  .         +|    ++++|++ ++||++||+|| +.|||.|. .+++.+++.++++ +++|++
T Consensus         2 ~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~   81 (182)
T 1xiy_A            2 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD   81 (182)
T ss_dssp             CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred             CCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence            5799999999998  4         67    7999998 69998888776 89999999 9999999999999 999995


Q ss_pred             -EEEEecCCCCCCCCCChHHHHHHHHHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCc
Q 026011          144 -ILAFPCNQFGGQEPGSNPEIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK  221 (245)
Q Consensus       144 -vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~  221 (245)
                       |++||.|        +...+++|. +++++ +||+++|.+   ..+.+.|+.+.....  .|..+...+.+|||| +|+
T Consensus        82 ~V~gvS~D--------~~~~~~~~~-~~~~~~~f~lLsD~~---~~~a~~yGv~~~~~~--~G~g~~~~R~tfvId-dG~  146 (182)
T 1xiy_A           82 DIYCITNN--------DIYVLKSWF-KSMDIKKIKYISDGN---SSFTDSMNMLVDKSN--FFMGMRPWRFVAIVE-NNI  146 (182)
T ss_dssp             EEEEEESS--------CHHHHHHHH-HHTTCCSSEEEECTT---SHHHHHTTCEEECGG--GTCCEEECCEEEEEE-TTE
T ss_pred             EEEEEeCC--------CHHHHHHHH-HHcCCCCceEEEeCc---hHHHHHhCCceeccc--cCCCCceEEEEEEEc-CCE
Confidence             9999998        899999999 78888 699997744   557788886533210  111122348899999 999


Q ss_pred             EEEecC
Q 026011          222 VIERYP  227 (245)
Q Consensus       222 i~~~~~  227 (245)
                      |++.+.
T Consensus       147 V~~~~v  152 (182)
T 1xiy_A          147 LVKMFQ  152 (182)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998774

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.73  E-value=9.3e-19  Score=131.13  Aligned_cols=116  Identities=14%  Similarity=0.131  Sum_probs=89.9

Q ss_pred             cccCcccCeE-EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           83 ATEKSLYDFT-VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        83 ~~g~~~pdf~-l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ..+..+|+|+ +.+.++....+++.+||++||+||++||++|+.+.+.+   .++.++++  ++.++.|++|.       
T Consensus         5 ~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~-------   75 (134)
T 2fwh_A            5 AQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTA-------   75 (134)
T ss_dssp             -----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTT-------
T ss_pred             cccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCC-------
Confidence            4677889998 66667767778888899999999999999999999998   88988886  49999999872       


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE--EecCCCCChHHHH
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI--ERYPPTTSPFQIE  236 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~--~~~~g~~~~~~l~  236 (245)
                      ..+...+.+ ++|+                                  |..+|+++++|++|+++  .++.|..+.+++.
T Consensus        76 ~~~~~~~l~-~~~~----------------------------------v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~  120 (134)
T 2fwh_A           76 NDAQDVALL-KHLN----------------------------------VLGLPTILFFDGQGQEHPQARVTGFMDAETFS  120 (134)
T ss_dssp             CCHHHHHHH-HHTT----------------------------------CCSSSEEEEECTTSCBCGGGCBCSCCCHHHHH
T ss_pred             CcchHHHHH-HHcC----------------------------------CCCCCEEEEECCCCCEeeeeeeeeccCHHHHH
Confidence            223444444 4543                                  33349999999999998  7899999999999


Q ss_pred             HHHHHH
Q 026011          237 KDIQKL  242 (245)
Q Consensus       237 ~~l~~l  242 (245)
                      +.|+++
T Consensus       121 ~~l~~~  126 (134)
T 2fwh_A          121 AHLRDR  126 (134)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            988865

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.73  E-value=7.8e-18  Score=124.39  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=88.1

Q ss_pred             cccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe--cCCCCCCCCCChHHHH
Q 026011           87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP--CNQFGGQEPGSNPEIK  164 (245)
Q Consensus        87 ~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs--~D~~~~~~~~~~~~~~  164 (245)
                      .+++++..+.+|++......+||++||+||++||++|+.+.+.+.+++++++ .++.++.|+  +|        .   ..
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~~d--------~---~~   72 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-GKFNIYYARLEEE--------K---NI   72 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETTSS--------H---HH
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCCCC--------c---hH
Confidence            4556666666665555666789999999999999999999999999999997 459999999  54        1   22


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      +.+ ++|+                                  |..+|+++++|++|+++.++.|..+.+++.+.|++++.
T Consensus        73 ~~~-~~~~----------------------------------v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~  117 (126)
T 2l57_A           73 DLA-YKYD----------------------------------ANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGV  117 (126)
T ss_dssp             HHH-HHTT----------------------------------CCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             HHH-HHcC----------------------------------CcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence            333 3433                                  33449999999999999999999999999999998764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.70  E-value=4.8e-17  Score=122.41  Aligned_cols=105  Identities=17%  Similarity=0.188  Sum_probs=87.9

Q ss_pred             EEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011           92 TVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF  171 (245)
Q Consensus        92 ~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~  171 (245)
                      .+.+.+|....+++++||++||+||++||++|+.+.|.+.++.++++++ +.++.|++|.       ..    +.+ ++|
T Consensus        35 ~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~  101 (141)
T 3hxs_A           35 KIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNVDK-------EP----ELA-RDF  101 (141)
T ss_dssp             HTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHH-HHT
T ss_pred             HhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc-eEEEEEECCC-------CH----HHH-HHc
Confidence            3566788899999999999999999999999999999999999999865 9999999872       22    233 343


Q ss_pred             CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       172 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      +                                  |..+|+++++|++|+++ ++.|..+.+++.+.|+++|+
T Consensus       102 ~----------------------------------v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          102 G----------------------------------IQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             T----------------------------------CCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred             C----------------------------------CCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence            3                                  34449999999999987 78888899999999999875

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.69  E-value=1.6e-17  Score=127.35  Aligned_cols=119  Identities=12%  Similarity=0.096  Sum_probs=86.1

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+...+++   +..|+.+++++.+||++||+|| ++||++|+.+.|.|   .++.+.+.+ ++.++.|++|....   -.
T Consensus        26 ~~~~~~~~---~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~-~~~~v~vd~~~~~~---~~   98 (154)
T 2ju5_A           26 IAAANLQW---ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-HLHMVEVDFPQKNH---QP   98 (154)
T ss_dssp             SCCCCCCE---ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEECCSSCC---CC
T ss_pred             cccCCCCC---CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC-cEEEEEecCccccC---CC
Confidence            44455555   4456778888889999999999 99999999999999   777665543 48999998773100   00


Q ss_pred             h---HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC--ChHH
Q 026011          160 N---PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPFQ  234 (245)
Q Consensus       160 ~---~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--~~~~  234 (245)
                      .   +...+.. ++|+                                  |..+|+++|+|++|+++.++ |..  +.++
T Consensus        99 ~~~~~~~~~l~-~~~~----------------------------------v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~  142 (154)
T 2ju5_A           99 EEQRQKNQELK-AQYK----------------------------------VTGFPELVFIDAEGKQLARM-GFEPGGGAA  142 (154)
T ss_dssp             HHHHHHHHHHH-HHTT----------------------------------CCSSSEEEEECTTCCEEEEE-CCCTTCHHH
T ss_pred             hhhHhhHHHHH-HHcC----------------------------------CCCCCEEEEEcCCCCEEEEe-cCCCCCHHH
Confidence            0   1111121 2221                                  44559999999999999999 988  8889


Q ss_pred             HHHHHHHHhhC
Q 026011          235 IEKDIQKLVVA  245 (245)
Q Consensus       235 l~~~l~~ll~~  245 (245)
                      +.+.|+++++.
T Consensus       143 l~~~l~~~l~~  153 (154)
T 2ju5_A          143 YVSKVKSALKL  153 (154)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999998863

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.67  E-value=1.8e-16  Score=117.52  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=82.9

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      ...++|+++  +.+++.++....+||++||+||++||++|+.+.|.+.+++++++++ +.++.|++|.        .   
T Consensus        20 ~~~~~~~~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~d~--------~---   85 (128)
T 3ul3_B           20 MFKKVPRLQ--QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR-IYLLKVDLDK--------N---   85 (128)
T ss_dssp             ------CCC--CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-EEEEEEEGGG--------C---
T ss_pred             HhccCCccc--cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEECCC--------C---
Confidence            344567666  5566777777889999999999999999999999999999999864 9999999872        2   


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                      .+.+ ++++                                  |..+|+++++ ++|+++.++.|..+.+++.+.|++
T Consensus        86 ~~l~-~~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           86 ESLA-RKFS----------------------------------VKSLPTIILL-KNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             HHHH-HHTT----------------------------------CCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             HHHH-HHcC----------------------------------CCCcCEEEEE-ECCEEEEEecCCCCHHHHHHHHHh
Confidence            1333 3433                                  3344999999 799999999999999998888764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.62  E-value=1.1e-15  Score=115.95  Aligned_cols=114  Identities=16%  Similarity=0.190  Sum_probs=92.8

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      ..|.++++..+.+++++.+.....+||++||+||++||++|+.+.+.|+++.+++.++ +.++.|++|        ... 
T Consensus        30 ~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~~vd~~--------~~~-   99 (148)
T 3p2a_A           30 RCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK-VRFVKVNTE--------AEP-   99 (148)
T ss_dssp             TTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT-CEEEEEETT--------TCH-
T ss_pred             hcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc-eEEEEEECc--------CCH-
Confidence            3566788888888888877655567899999999999999999999999999999765 999999887        222 


Q ss_pred             HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                        +.. ++|+                                  |..+|+++++ ++|+++.++.|..+.+++.+.|+++
T Consensus       100 --~l~-~~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~  141 (148)
T 3p2a_A          100 --ALS-TRFR----------------------------------IRSIPTIMLY-RNGKMIDMLNGAVPKAPFDNWLDEQ  141 (148)
T ss_dssp             --HHH-HHTT----------------------------------CCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHHHH
T ss_pred             --HHH-HHCC----------------------------------CCccCEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHH
Confidence              223 3433                                  3344988888 6999999999999999999999998


Q ss_pred             hh
Q 026011          243 VV  244 (245)
Q Consensus       243 l~  244 (245)
                      ++
T Consensus       142 l~  143 (148)
T 3p2a_A          142 LS  143 (148)
T ss_dssp             HH
T ss_pred             hc
Confidence            75

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.62  E-value=1e-15  Score=114.01  Aligned_cols=97  Identities=16%  Similarity=0.074  Sum_probs=75.6

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHH--HHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELS--HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~--~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+||++||+||++||++|+.+.|.|.  ++.+++.++ +.++.|+++.        .+...+.+ ++|++.+.       
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~-~~~~~vd~~~--------~~~~~~l~-~~~~v~~~-------   89 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH-FEVVKIDVGN--------FDRNLELS-QAYGDPIQ-------   89 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH-CEEEEEECTT--------TTSSHHHH-HHTTCGGG-------
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC-EEEEEEeCCc--------ccchHHHH-HHhCCccC-------
Confidence            46899999999999999999999999  999998764 9999999841        11122333 45443210       


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC-------CCChHHHHHHHHHHh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP-------TTSPFQIEKDIQKLV  243 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g-------~~~~~~l~~~l~~ll  243 (245)
                                              ..+|+++++|++|+++.++.|       ..+.+++.+.|+++.
T Consensus        90 ------------------------~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           90 ------------------------DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             ------------------------GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             ------------------------CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence                                    334999999999999999988       668889999998875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.58  E-value=4.5e-16  Score=121.15  Aligned_cols=123  Identities=7%  Similarity=-0.016  Sum_probs=74.5

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcc
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP  176 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p  176 (245)
                      .+.+.+.+||+|||+||++||++|+.+.+.+   .++.+.+++ ++.++.|++|+        ...+.+...........
T Consensus        39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~--------~~~~~~~~~~~~~~~~~  109 (172)
T 3f9u_A           39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDN--------KTPLTEPVKIMENGTER  109 (172)
T ss_dssp             HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTC--------CCEEEEEEEEEETTEEE
T ss_pred             HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCc--------ccccchhhhhhhcchhh
Confidence            3445556799999999999999999864444   555555554 49999999872        11000000000000000


Q ss_pred             eeec-cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCC-hHHHHHHHHHHhh
Q 026011          177 IFDK-VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS-PFQIEKDIQKLVV  244 (245)
Q Consensus       177 ~~~d-~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~-~~~l~~~l~~ll~  244 (245)
                      .+.. .+..+......|+             |..+|+++|+|++|+++.++.|..+ .+++.+.|+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~-------------v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          110 TLRTVGDKWSYLQRVKFG-------------ANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             EEEEHHHHHHHHHHHHHS-------------CCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHcC-------------CCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence            0000 0000000011121             5667999999999999999999988 9999999888875

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.57  E-value=4.2e-15  Score=106.63  Aligned_cols=89  Identities=16%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      +.+.++|+|||+||++||++|+...|.+.++.+++++  +.++.|++|+       .    .+.+ ++|+          
T Consensus        15 l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~-------~----~~l~-~~~~----------   70 (105)
T 3zzx_A           15 LNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD--VVFLKVDVDE-------C----EDIA-QDNQ----------   70 (105)
T ss_dssp             HHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEETTT-------C----HHHH-HHTT----------
T ss_pred             HHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC--eEEEEEeccc-------C----HHHH-HHcC----------
Confidence            3344689999999999999999999999999998864  8888898772       2    2233 4433          


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                              |.++|+++++ ++|+++.++.|. ++++|.+.|++
T Consensus        71 ------------------------V~~~PT~~~~-~~G~~v~~~~G~-~~~~l~~~i~k  103 (105)
T 3zzx_A           71 ------------------------IACMPTFLFM-KNGQKLDSLSGA-NYDKLLELVEK  103 (105)
T ss_dssp             ------------------------CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHH
T ss_pred             ------------------------CCeecEEEEE-ECCEEEEEEeCc-CHHHHHHHHHh
Confidence                                    4445987666 899999999995 78888888876

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.56  E-value=6.4e-15  Score=107.29  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      ++.+||++||+||++||++|+.+.|.|.++.+++++  +.++.|++|        ..   .+.+ ++|+           
T Consensus        27 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d--------~~---~~l~-~~~~-----------   81 (116)
T 3qfa_C           27 DAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVD--------DC---QDVA-SECE-----------   81 (116)
T ss_dssp             HHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETT--------TT---HHHH-HHTT-----------
T ss_pred             HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECC--------CC---HHHH-HHcC-----------
Confidence            334789999999999999999999999999999866  999999887        22   2233 3433           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                             |..+|+++++ ++|+++.++.|. +.+++.+.|+++|
T Consensus        82 -----------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           82 -----------------------VKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             -----------------------CCSSSEEEEE-SSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             -----------------------CccccEEEEE-eCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence                                   3344988887 899999999998 8999999998875

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=4.2e-15  Score=110.00  Aligned_cols=100  Identities=15%  Similarity=0.206  Sum_probs=76.2

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcc
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP  176 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p  176 (245)
                      .+.+++.+||++||+||++||++|+.+.+.+   .++.+.+.+ ++.++.|.+|.         +...+.+ ++++    
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------~~~~~~~-~~~~----   83 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEK---------GEGVELR-KKYG----   83 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSS---------TTHHHHH-HHTT----
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCC---------cchHHHH-HHcC----
Confidence            3455556799999999999999999999998   666666554 37888887651         1122333 4433    


Q ss_pred             eeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          177 IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       177 ~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                    |..+|+++++|++|+++.++.|..+.+++.+.|++++.
T Consensus        84 ------------------------------v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~  121 (130)
T 2kuc_A           84 ------------------------------VHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVE  121 (130)
T ss_dssp             ------------------------------CCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHS
T ss_pred             ------------------------------CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence                                          33349999999999999999999999999999998874

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.55  E-value=1.7e-14  Score=103.03  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             cCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011           95 DIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA  173 (245)
Q Consensus        95 ~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      +++++.+... .-.||+++|+||++||++|+...|.+.++.++++++ +.++.|++|.       ..    +.+ ++++ 
T Consensus         6 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~~-   71 (108)
T 2trx_A            6 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----GTA-PKYG-   71 (108)
T ss_dssp             ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CT----THH-HHTT-
T ss_pred             ecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC-cEEEEEECCC-------CH----HHH-HHcC-
Confidence            3445444421 225789999999999999999999999999999765 9999998872       11    122 2322 


Q ss_pred             CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          174 EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       174 ~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                       |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        72 ---------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           72 ---------------------------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             ---------------------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ---------------------------------CcccCEEEEE-eCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence                                             3444999999 899999999999999999999998874

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.55  E-value=2.1e-14  Score=107.45  Aligned_cols=90  Identities=18%  Similarity=0.208  Sum_probs=73.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|++||+||++||++|+...+.|.++.++++++ +.++.|++|.        ..   +.+ ++|+              
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~---~l~-~~~~--------------   89 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDTEK--------EQ---ELA-GAFG--------------   89 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT--------CH---HHH-HHTT--------------
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-EEEEEEeCCC--------CH---HHH-HHcC--------------
Confidence            4689999999999999999999999999999865 9999999872        21   233 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++|++|+++ ++.|..+.+++.+.|++++.
T Consensus        90 --------------------v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~  126 (136)
T 2l5l_A           90 --------------------IRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLL  126 (136)
T ss_dssp             --------------------CCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHT
T ss_pred             --------------------CCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhh
Confidence                                33449999999999998 67888899999999998874

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.55  E-value=7.5e-15  Score=106.10  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+...+.+.++.++++++ +.++.|++|.       ..    +.+ ++++              
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~-v~~~~vd~~~-------~~----~l~-~~~~--------------   68 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK-LKIVKIDVDE-------NQ----ETA-GKYG--------------   68 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT-CEEEEEETTT-------CC----SHH-HHTT--------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEECCC-------CH----HHH-HHcC--------------
Confidence            7899999999999999999999999999999864 9999999872       11    122 2322              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|++.+
T Consensus        69 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~~  104 (112)
T 2voc_A           69 --------------------VMSIPTLLVL-KDGEVVETSVGFKPKEALQELVNKHL  104 (112)
T ss_dssp             --------------------CCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTS
T ss_pred             --------------------CCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence                                3445999999 99999999999999999999988765

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.54  E-value=7.5e-14  Score=103.19  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=74.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|++||+||++||++|+.+.|.+.++.++++++ +.++.|++|        ...   +.+ ++++              
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~--------~~~---~l~-~~~~--------------   86 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNAD--------KHQ---SLG-GQYG--------------   86 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEETT--------TCH---HHH-HHHT--------------
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeCC--------CCH---HHH-HHcC--------------
Confidence            4789999999999999999999999999999875 999999887        222   222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|++++++++|+++.++.|..+.+++.+.|.+.+.
T Consensus        87 --------------------v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           87 --------------------VQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             --------------------CCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             --------------------CCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence                                33449999999999877889999899999999888764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.54  E-value=7.6e-15  Score=104.82  Aligned_cols=90  Identities=16%  Similarity=0.216  Sum_probs=74.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +|+++||+||++||++|+...+.+.++.++++++ +.++.|++|.       ..    +.+ ++++              
T Consensus        20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~~--------------   72 (109)
T 3tco_A           20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNVDE-------NQ----KIA-DKYS--------------   72 (109)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------CH----HHH-HHTT--------------
T ss_pred             cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC-ceEEEEcccc-------CH----HHH-HhcC--------------
Confidence            5899999999999999999999999999999865 9999998872       22    223 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        73 --------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  109 (109)
T 3tco_A           73 --------------------VLNIPTTLIF-VNGQLVDSLVGAVDEDTLESTVNKYLK  109 (109)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             --------------------cccCCEEEEE-cCCcEEEeeeccCCHHHHHHHHHHHhC
Confidence                                3344999999 999999999999999999999998864

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.54  E-value=2.6e-14  Score=105.97  Aligned_cols=90  Identities=20%  Similarity=0.240  Sum_probs=74.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+...|.++++.++++++ +.++.|++|.       ..    +                     
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~~~-------~~----~---------------------   85 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----G---------------------   85 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT-EEEEEEETTT-------CC----T---------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEECCC-------CH----H---------------------
Confidence            5789999999999999999999999999999865 9999998872       10    0                     


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                       +.+.|+             |..+|+++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus        86 -l~~~~~-------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           86 -TAPKYG-------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             -TSGGGT-------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -HHHHcC-------------CCccCEEEEE-eCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence             111222             4555999999 999999999999999999999998874

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.54  E-value=1.7e-14  Score=103.85  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=70.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+.+.|.+.++.+++++  +.++.|.+|.        .   .+.+ ++++              
T Consensus        23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vd~~~--------~---~~l~-~~~~--------------   74 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ--ADFYKLDVDE--------L---GDVA-QKNE--------------   74 (109)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT--------C---HHHH-HHTT--------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC--CEEEEEECCC--------C---HHHH-HHcC--------------
Confidence            589999999999999999999999999999864  8999998872        2   2233 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|++++++ +|+++.++.|. +++++++.|++++
T Consensus        75 --------------------v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           75 --------------------VSAMPTLLLFK-NGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             --------------------CCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             --------------------CCccCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence                                33449999997 99999999988 6789999988764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.54  E-value=1.4e-14  Score=102.91  Aligned_cols=89  Identities=16%  Similarity=0.221  Sum_probs=73.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++++++|+||++||++|+...+.+.++.++++++ +.++.|++|.       ..    +.+ ++++              
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~~--------------   70 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE-------NP----STA-AKYE--------------   70 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHH-HHTT--------------
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc-------CH----HHH-HhCC--------------
Confidence            7899999999999999999999999999999876 9999999872       22    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|++++++ +|+++.++.|..+.+++.+.|+++|
T Consensus        71 --------------------v~~~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           71 --------------------VMSIPTLIVFK-DGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             --------------------CCSBSEEEEEE-TTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             --------------------CcccCEEEEEe-CCeEEEEEeCCCCHHHHHHHHHHhC
Confidence                                33449888884 9999999999999999999988764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.53  E-value=5.3e-15  Score=105.21  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .||+++|+||++||++|+...+.++++.++++++ +.++.|++|.       ..    +.. ++++              
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~-------~~----~~~-~~~~--------------   68 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDE-------NP----ETT-SQFG--------------   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT-CEEEEEETTT-------CH----HHH-HHTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECcC-------CH----HHH-HHcC--------------
Confidence            5789999999999999999999999999999865 9999999872       21    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus        69 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           69 --------------------IMSIPTLILF-KGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             --------------------CccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHh
Confidence                                3344999999 89999999999989999999888765

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.53  E-value=4.7e-14  Score=100.57  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .||+++|+||++||++|+...+.+.++.++++++ +.++.|++|.       ..    +.. ++++              
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~~--------------   70 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDE-------SP----NVA-SEYG--------------   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHH-HHHT--------------
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc-eEEEEEECCC-------CH----HHH-HHCC--------------
Confidence            5789999999999999999999999999999865 9999998872       22    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        71 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           71 --------------------IRSIPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             --------------------CCSSCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             --------------------CCcCCEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence                                3334987776 899999999999999999999998864

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.53  E-value=3.8e-14  Score=101.95  Aligned_cols=92  Identities=20%  Similarity=0.256  Sum_probs=71.5

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      +.+.+||++||+||++||++|+.+.|.|.++.+++++  +.++.|++|+       ..   .+.+ ++++          
T Consensus        19 ~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~~---~~~~-~~~~----------   75 (111)
T 2pu9_C           19 VKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD--VIFLKLDCNQ-------EN---KTLA-KELG----------   75 (111)
T ss_dssp             HTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSS-------TT---HHHH-HHHC----------
T ss_pred             HHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC--eEEEEEecCc-------ch---HHHH-HHcC----------
Confidence            3445689999999999999999999999999999864  8999998761       11   1222 3333          


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                              |..+|+ ++++++|+++.++.|. +.+++.+.|++++
T Consensus        76 ------------------------v~~~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           76 ------------------------IRVVPT-FKILKENSVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             ------------------------CSBSSE-EEEESSSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred             ------------------------CCeeeE-EEEEeCCcEEEEEcCC-CHHHHHHHHHHhh
Confidence                                    334498 6777999999999887 4888999998876

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.52  E-value=1.2e-14  Score=110.71  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=72.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++|++||+||++||++|+.+.|.|.++.++++++ +.++.|++|+       ..    +.+ ++|+              
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~-------~~----~l~-~~~~--------------   74 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQ-------TA----VYT-QYFD--------------   74 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTT-------CC----HHH-HHTT--------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCc-------CH----HHH-HHcC--------------
Confidence            5899999999999999999999999999999776 9999998872       11    223 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE---------EecCC-CCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI---------ERYPP-TTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~---------~~~~g-~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++ ++++|+++         .++.| ..+.+++.+.|+++++
T Consensus        75 --------------------v~~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           75 --------------------ISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             --------------------CCSSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             --------------------CCccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence                                33449888 67899999         88888 7788999999988763

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.52  E-value=3.3e-14  Score=102.34  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .||++||+||++||++|+...|.+.++.++++++ +.++.|++|.       ..    +.+ ++++              
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~~--------------   74 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-IEIVKLNIDE-------NP----GTA-AKYG--------------   74 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC-eEEEEEEcCC-------CH----HHH-HhCC--------------
Confidence            4789999999999999999999999999999765 9999999872       21    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus        75 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           75 --------------------VMSIPTLNVY-QGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             --------------------CCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence                                3334987666 899999999999999999999999875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.52  E-value=6.8e-14  Score=100.87  Aligned_cols=103  Identities=13%  Similarity=0.115  Sum_probs=80.2

Q ss_pred             EcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011           94 KDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus        94 ~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      .+++++.+... .-+|+++||+||++||++|+...+.+.++.++++++ +.++.|++|.       ..    +.. ++++
T Consensus        10 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~-------~~----~~~-~~~~   76 (115)
T 1thx_A           10 ITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP-------NP----TTV-KKYK   76 (115)
T ss_dssp             EECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT-------CH----HHH-HHTT
T ss_pred             EEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCC-------CH----HHH-HHcC
Confidence            34445444422 236789999999999999999999999999999866 9999999872       22    222 3333


Q ss_pred             CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          173 AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       173 ~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                        |..+|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus        77 ----------------------------------v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           77 ----------------------------------VEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             ----------------------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ----------------------------------CCceeEEEEE-cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence                                              3334999999 999999999999899999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.52  E-value=2.7e-14  Score=119.93  Aligned_cols=92  Identities=15%  Similarity=0.222  Sum_probs=74.7

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+.+||+|||+||++||++|+.+.|.+.++.++++++ +.++.|++|.       .    .+.. ++|+           
T Consensus        22 ~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~-------~----~~~~-~~~~-----------   77 (287)
T 3qou_A           22 EQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILAKLDCDA-------E----QMIA-AQFG-----------   77 (287)
T ss_dssp             TTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS-SEEEEEETTT-------C----HHHH-HTTT-----------
T ss_pred             HhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEEeCcc-------C----HHHH-HHcC-----------
Confidence            3346899999999999999999999999999999865 9999999872       2    2333 3433           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                             |.++|+++++ ++|+++.++.|..+.+.+.+.|+..+
T Consensus        78 -----------------------v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           78 -----------------------LRAIPTVYLF-QNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             -----------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             -----------------------CCCCCeEEEE-ECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence                                   3445999888 79999999999988888988887654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.52  E-value=3.8e-15  Score=111.30  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=75.7

Q ss_pred             eEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011           91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR  170 (245)
Q Consensus        91 f~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~  170 (245)
                      +++.+.++-...+++.+||++||+||++||++|+.+.|.|.++.+++   ++.++.|++|        ..   .+.+ ++
T Consensus        23 ~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~--------~~---~~l~-~~   87 (133)
T 3cxg_A           23 IELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVD--------IH---PKLN-DQ   87 (133)
T ss_dssp             EECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETT--------TC---HHHH-HH
T ss_pred             EEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEecc--------ch---HHHH-Hh
Confidence            33444444344467778999999999999999999999999887766   4888888876        22   1222 33


Q ss_pred             cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEE-CCCCc--EEEecCCCCChHHHHHHHHHHhh
Q 026011          171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV-DKNGK--VIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       171 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~li-D~~G~--i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      |+                                  |..+|+++++ |++|+  ++.++.|. +.+++.+.|++++.
T Consensus        88 ~~----------------------------------v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           88 HN----------------------------------IKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             TT----------------------------------CCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             cC----------------------------------CCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            33                                  3344999988 45666  99999887 78899999998864

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.52  E-value=7.6e-14  Score=105.96  Aligned_cols=90  Identities=8%  Similarity=-0.005  Sum_probs=70.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++|||+||++||++|+...|.|.++.++++++ +.|+-|++|+.           .+++ ++|+              
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~-v~f~kVDVDe~-----------~e~a-~~y~--------------   92 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF-CVIYLVDITEV-----------PDFN-TMYE--------------   92 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTC-----------CTTT-TTTT--------------
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC-cEEEEEECCCC-----------HHHH-HHcC--------------
Confidence            4679999999999999999999999999999765 89999998831           1122 2322              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE--E-------ecCCCCC-hHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI--E-------RYPPTTS-PFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~--~-------~~~g~~~-~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+.+  .       +..|..+ .++|.+.|++++.
T Consensus        93 --------------------V~siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r  139 (160)
T 2av4_A           93 --------------------LYDPVSVMFF-YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR  139 (160)
T ss_dssp             --------------------CCSSEEEEEE-ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred             --------------------CCCCCEEEEE-ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence                                4445987777 788887  5       7888776 8889999988764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.51  E-value=9.4e-14  Score=99.97  Aligned_cols=91  Identities=9%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+||+++|+||++||++|+...|.+.++.++++..++.++.|++|.        ..   +.. ++++             
T Consensus        19 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~--------~~---~~~-~~~~-------------   73 (112)
T 3d6i_A           19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE--------NS---EIS-ELFE-------------   73 (112)
T ss_dssp             TTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT--------CH---HHH-HHTT-------------
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc--------CH---HHH-HHcC-------------
Confidence            3488999999999999999999999999999765669999999872        21   222 3333             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                           |..+|+++++ ++|+++.++.|. ..+++.+.|++++.
T Consensus        74 ---------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           74 ---------------------ISAVPYFIII-HKGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             ---------------------CCSSSEEEEE-ETTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             ---------------------CCcccEEEEE-ECCEEEEEecCC-CHHHHHHHHHHHHh
Confidence                                 3344988777 799999999987 45679999988764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.51  E-value=4.7e-14  Score=103.01  Aligned_cols=90  Identities=17%  Similarity=0.225  Sum_probs=74.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .||++||+||++||++|+...+.|.++.+++.++ +.++.|++|        ...   +.+ ++|+              
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~-v~~~~vd~d--------~~~---~l~-~~~~--------------   82 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK-VVMAKVDID--------DHT---DLA-IEYE--------------   82 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEETT--------TTH---HHH-HHTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCC--------CCH---HHH-HHcC--------------
Confidence            5789999999999999999999999999998764 999999987        221   233 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus        83 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           83 --------------------VSAVPTVLAM-KNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --------------------CCcccEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence                                3334999888 899999999999899999999998863

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.27  E-value=1.1e-15  Score=113.18  Aligned_cols=102  Identities=14%  Similarity=0.235  Sum_probs=78.4

Q ss_pred             CCeeecCCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011           98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE  174 (245)
Q Consensus        98 G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      ++.+.+...+||++||+||++||++|+.+.+.+   .++.+.++++ +.++.|++|.        . +..+.+ ++    
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~-~~~~~~-~~----   73 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR-FVVASVSVDT--------P-EGQELA-RR----   73 (130)
Confidence            566777788899999999999999999999999   8888877653 8888887651        1 111111 12    


Q ss_pred             cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC-CCcE--EEecCCCCChHHHHHHHHHHhh
Q 026011          175 FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKV--IERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       175 ~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~-~G~i--~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                       |+             |..+|+++++|+ +|++  +.++.|..+.+++.+.|+++++
T Consensus        74 -----------------~~-------------v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~  116 (130)
T 2lst_A           74 -----------------YR-------------VPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCV  116 (130)
Confidence                             22             445599999995 6999  8899998888999999988875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=3.8e-14  Score=106.12  Aligned_cols=104  Identities=14%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011           93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTR  170 (245)
Q Consensus        93 l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~  170 (245)
                      +.+++++.+...-.++|++||+||++||++|+.+.+.|.++.+++++++  +.++.|.++        ..   .+.+ ++
T Consensus        19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--------~~---~~~~-~~   86 (140)
T 2dj1_A           19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT--------SA---SMLA-SK   86 (140)
T ss_dssp             EEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT--------TC---HHHH-HH
T ss_pred             CEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc--------cc---HHHH-HH
Confidence            4445555554332358999999999999999999999999999998764  777777665        11   2233 34


Q ss_pred             cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       171 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      |+                                  |..+|+++++ ++|+ +.++.|..+.++|.+.|++++.
T Consensus        87 ~~----------------------------------v~~~Pt~~~~-~~G~-~~~~~g~~~~~~l~~~l~~~~~  124 (140)
T 2dj1_A           87 FD----------------------------------VSGYPTIKIL-KKGQ-AVDYDGSRTQEEIVAKVREVSQ  124 (140)
T ss_dssp             TT----------------------------------CCSSSEEEEE-ETTE-EEECCSCCCHHHHHHHHHHHHS
T ss_pred             CC----------------------------------CCccCeEEEE-ECCc-EEEcCCCCCHHHHHHHHHHhcC
Confidence            33                                  3344999999 7899 6788899999999999998874

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.51  E-value=2.9e-14  Score=109.32  Aligned_cols=90  Identities=12%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++||+||++||++|+...|.|+++.++++++ +.++.|++|+       ..    +.. ++|+              
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~-------~~----~l~-~~~~--------------  115 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKIDTQA-------HP----AVA-GRHR--------------  115 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT-------ST----HHH-HHTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC-EEEEEEeCCc-------cH----HHH-HHcC--------------
Confidence            5789999999999999999999999999999865 9999999872       11    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus       116 --------------------i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          116 --------------------IQGIPAFILF-HKGRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --------------------CCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence                                3444998888 799999999999999999999999875

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.51  E-value=7e-14  Score=100.48  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=72.0

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      ||++||+||++||++|+...+.|.++.+++++ ++.++.|++|        ...   +.. ++|+               
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~--------~~~---~~~-~~~~---------------   75 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVD--------AVA---AVA-EAAG---------------   75 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETT--------TTH---HHH-HHHT---------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECC--------chH---HHH-HHcC---------------
Confidence            89999999999999999999999999999976 5999999887        221   222 3333               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                                         |..+|+++++ ++|+++.++.|. +.+++.+.|++++++
T Consensus        76 -------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~a  112 (112)
T 1ep7_A           76 -------------------ITAMPTFHVY-KDGVKADDLVGA-SQDKLKALVAKHAAA  112 (112)
T ss_dssp             -------------------CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHCC
T ss_pred             -------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHHHhcC
Confidence                               3334986555 899999999998 899999999998864

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.51  E-value=2.9e-14  Score=101.72  Aligned_cols=88  Identities=23%  Similarity=0.274  Sum_probs=69.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++|+++|+||++||++|+...|.+.++.++++  ++.++.|++|.       ..    +.+ ++|+              
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~-------~~----~l~-~~~~--------------   68 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD-------MQ----EIA-GRYA--------------   68 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC-------C---------------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC-------CH----HHH-HhcC--------------
Confidence            57899999999999999999999999999984  49999999872       11    112 2222              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        69 --------------------v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           69 --------------------VFTGPTVLLF-YNGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             ---------------------CCCCEEEEE-ETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             --------------------CCCCCEEEEE-eCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence                                4445999998 59999999999999999999998775

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.51  E-value=2.7e-14  Score=100.86  Aligned_cols=90  Identities=18%  Similarity=0.218  Sum_probs=74.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +|++++|+||++||++|+...+.+.++.+++++  +.++.|++|.        ..   +.. ++++              
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~--------~~---~~~-~~~~--------------   66 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE--------NP---DIA-ARYG--------------   66 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT--------CH---HHH-HHTT--------------
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC--------CH---HHH-HhCC--------------
Confidence            578999999999999999999999999999876  9999999872        21   222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                                          +..+|+++++ ++|+++.++.|..+.+++.+.|++++++
T Consensus        67 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~~  104 (104)
T 2e0q_A           67 --------------------VMSLPTVIFF-KDGEPVDEIIGAVPREEIEIRIKNLLGE  104 (104)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             --------------------ccccCEEEEE-ECCeEhhhccCCCCHHHHHHHHHHHhcC
Confidence                                3334999888 8999999999998999999999998864

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.51  E-value=9e-14  Score=103.70  Aligned_cols=87  Identities=9%  Similarity=0.063  Sum_probs=73.7

Q ss_pred             CEEEEEEecCCC--CCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          109 KVLLIVNVASRC--GLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       109 k~vll~F~~t~C--~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +++||+||++||  ++|+...|.|.++.++|.++ ++++.|++|           +..+.+ .+|+              
T Consensus        34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~-v~~~KVdvD-----------e~~~la-~~yg--------------   86 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR-LVAAEVAAE-----------AERGLM-ARFG--------------   86 (137)
T ss_dssp             SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT-EEEEEECGG-----------GHHHHH-HHHT--------------
T ss_pred             CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC-cEEEEEECC-----------CCHHHH-HHcC--------------
Confidence            499999999999  99999999999999999876 999999877           223344 4544              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ +||+++.+..|..+.+++.+.|++++
T Consensus        87 --------------------V~siPTlilF-kdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           87 --------------------VAVCPSLAVV-QPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             --------------------CCSSSEEEEE-ECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             --------------------CccCCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence                                4455988888 99999999999999999999998876

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.51  E-value=2.9e-14  Score=104.06  Aligned_cols=103  Identities=17%  Similarity=0.047  Sum_probs=79.4

Q ss_pred             EEcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh----CCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           93 VKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT----QGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        93 l~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~----~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      +.+++++.+... ..++|++||+||++||++|+.+.|.+.++.+++++    .++.++.|++|.        .       
T Consensus         9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~--------~-------   73 (121)
T 2djj_A            9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA--------N-------   73 (121)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT--------S-------
T ss_pred             eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc--------c-------
Confidence            455666666543 24789999999999999999999999999999986    258888887761        0       


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHhh
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                          .    +.   .          +             |..+|++++++++|++ +.++.|..+.+++.+.|++++.
T Consensus        74 ----~----~~---~----------~-------------v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           74 ----D----VP---D----------E-------------IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             ----C----CS---S----------C-------------CSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             ----c----cc---c----------c-------------cCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence                0    00   0          0             4555999999998885 6788898899999999998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=4.9e-14  Score=104.60  Aligned_cols=109  Identities=22%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             CeEEEcCCCCeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           90 DFTVKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        90 df~l~~~~G~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      +-.+.+++++.+...-. ++|++||+||++||++|+.+.|.|.++.+++++. ++.++.|.++.        .       
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~--------~-------   70 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA--------N-------   70 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT--------S-------
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc--------C-------
Confidence            33455566666554333 4899999999999999999999999999999853 47787776541        0       


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE-EecC-CCCChHHHHHHHHHHhh
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYP-PTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~-~~~~-g~~~~~~l~~~l~~ll~  244 (245)
                              +.          ....|+             |..+|++++++++|++. ..+. |..+.+++.+.|++++.
T Consensus        71 --------~~----------~~~~~~-------------v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           71 --------DI----------TNDQYK-------------VEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             --------CC----------CCSSCC-------------CSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred             --------HH----------HHhhcC-------------CCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence                    00          011121             55669999998877653 2455 55788899999998764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.50  E-value=3e-14  Score=107.17  Aligned_cols=90  Identities=10%  Similarity=0.113  Sum_probs=74.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|++||+||++||++|+...+.+.++.++++++ +.++.|++|.        ..   +.+ ++++              
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~---~l~-~~~~--------------   75 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIAT--------NP---WTA-EKYG--------------   75 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEETTT--------CH---HHH-HHHT--------------
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc-eEEEEEECCc--------CH---hHH-HHCC--------------
Confidence            4889999999999999999999999999999875 9999999872        22   222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        76 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           76 --------------------VQGTPTFKFF-CHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             --------------------CCEESEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             --------------------CCcCCEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence                                3444987777 899999999999999999999998874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.50  E-value=7.2e-14  Score=99.41  Aligned_cols=102  Identities=14%  Similarity=0.158  Sum_probs=77.9

Q ss_pred             EcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011           94 KDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus        94 ~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      ..++++.+... .-.++++||+||++||++|+...+.+.++.+++++ ++.++.|++|.       ..    +.. ++++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------~~----~~~-~~~~   71 (107)
T 2i4a_A            5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD-------NP----ETP-NAYQ   71 (107)
T ss_dssp             EECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT-------CC----HHH-HHTT
T ss_pred             eecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC-------CH----HHH-HhcC
Confidence            34455554321 23578999999999999999999999999999986 49999999872       11    222 3333


Q ss_pred             CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          173 AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       173 ~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                                        |..+|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        72 ----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           72 ----------------------------------VRSIPTLMLV-RDGKVIDKKVGALPKSQLKAWVESAQ  107 (107)
T ss_dssp             ----------------------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHTC
T ss_pred             ----------------------------------CCccCEEEEE-eCCEEEEEecCCCCHHHHHHHHHhcC
Confidence                                              3334999999 99999999999989999999988753

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=7.9e-14  Score=103.31  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh---CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~---~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+|++||+||++||++|+.+.|.+.++.+++++   .++.++.|++|.       ..    +.+ ++|+           
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~----~l~-~~~~-----------   80 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV-------NQ----VLA-SRYG-----------   80 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT-------CC----HHH-HHHT-----------
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC-------CH----HHH-HhCC-----------
Confidence            478999999999999999999999999999973   348999998772       11    222 2322           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                             |..+|+++++++ |+++.++.|..+.+++.+.|++++.
T Consensus        81 -----------------------v~~~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           81 -----------------------IRGFPTIKIFQK-GESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             -----------------------CCSSSEEEEEET-TEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             -----------------------CCeeCeEEEEeC-CCceEEecCCCCHHHHHHHHHHHhh
Confidence                                   344499999987 8899999999899999999998874

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.50  E-value=1.3e-14  Score=106.23  Aligned_cols=111  Identities=16%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             ccCcccCeEEEcCCCCeeecCC--CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSK--FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~--~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      .|...+.+.+.+.++-.-.+.+  .+||++||+||++||++|+...+.|.++.+++++  +.++.|++|.        . 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~--------~-   76 (122)
T 2vlu_A            8 AAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE--------L-   76 (122)
T ss_dssp             ----CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT--------C-
T ss_pred             cCCCCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC--------C-
Confidence            4555666666654432222333  2588999999999999999999999999999875  9999999872        1 


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                        .+.. ++|+                                  |..+|+++++ ++|+++.++.|.. .+++.+.|++
T Consensus        77 --~~~~-~~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~  117 (122)
T 2vlu_A           77 --KPIA-EQFS----------------------------------VEAMPTFLFM-KEGDVKDRVVGAI-KEELTAKVGL  117 (122)
T ss_dssp             --HHHH-HHTT----------------------------------CCSSSEEEEE-ETTEEEEEEESSC-HHHHHHHHHH
T ss_pred             --HHHH-HHcC----------------------------------CCcccEEEEE-eCCEEEEEEeCcC-HHHHHHHHHH
Confidence              1223 3433                                  3334986665 8999999999988 8899999998


Q ss_pred             Hhh
Q 026011          242 LVV  244 (245)
Q Consensus       242 ll~  244 (245)
                      +++
T Consensus       118 ~l~  120 (122)
T 2vlu_A          118 HAA  120 (122)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            875

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.50  E-value=5.2e-14  Score=99.82  Aligned_cols=103  Identities=15%  Similarity=0.192  Sum_probs=78.3

Q ss_pred             EEcCCCCeeecCC-CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011           93 VKDIDGKDVPLSK-FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF  171 (245)
Q Consensus        93 l~~~~G~~v~l~~-~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~  171 (245)
                      +.+++++.+...- -.+|+++|+||++||++|+...+.+.++.++++++ +.++.|++|.        .   .+.+ +++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~--------~---~~~~-~~~   68 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE--------A---PGIA-TQY   68 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT--------C---HHHH-HHT
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc-eEEEEEcCcc--------h---HHHH-HhC
Confidence            3455565554322 25789999999999999999999999999999865 9999998872        2   1233 343


Q ss_pred             CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       172 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      +                                  |..+|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus        69 ~----------------------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           69 N----------------------------------IRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             T----------------------------------CCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             C----------------------------------CCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            3                                  3334987666 79999999999989999999998875

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.49  E-value=1.4e-15  Score=117.84  Aligned_cols=112  Identities=12%  Similarity=0.118  Sum_probs=80.4

Q ss_pred             ccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        88 ~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      .+++.+.+.+ +.+.+...+||++||+||++||++|+.+.|.|.++.+.+.. ++.++.|++|.       ..+.   ..
T Consensus        27 ~~~i~w~~~~-~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~-------~~~~---~~   94 (164)
T 1sen_A           27 GDHIHWRTLE-DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNLED-------EEEP---KD   94 (164)
T ss_dssp             CTTSCBCCHH-HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEG-------GGSC---SC
T ss_pred             cccccccCHH-HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecC-------CchH---HH
Confidence            4455555555 45666667899999999999999999999999998766544 37888888762       1100   00


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC----------CChHHHHH
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----------TSPFQIEK  237 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~----------~~~~~l~~  237 (245)
                       ..+++          .                      +..+|+++++|++|+++.++.|.          .+.+++.+
T Consensus        95 -~~~~~----------~----------------------~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~  141 (164)
T 1sen_A           95 -EDFSP----------D----------------------GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ  141 (164)
T ss_dssp             -GGGCT----------T----------------------CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHH
T ss_pred             -HHhcc----------c----------------------CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHH
Confidence             11110          0                      13349999999999999888884          67889999


Q ss_pred             HHHHHhh
Q 026011          238 DIQKLVV  244 (245)
Q Consensus       238 ~l~~ll~  244 (245)
                      .|+++++
T Consensus       142 ~l~~~l~  148 (164)
T 1sen_A          142 GMKEAQE  148 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.49  E-value=4.9e-14  Score=105.56  Aligned_cols=94  Identities=17%  Similarity=0.317  Sum_probs=74.9

Q ss_pred             eecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      +.+.+.+||++||+||++||++|+.+.|.|+++.++++  ++.++.|++|+        .   .+.. ++|+        
T Consensus        39 ~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~--------~---~~~~-~~~~--------   96 (139)
T 3d22_A           39 LSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE--------L---SDFS-ASWE--------   96 (139)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT--------S---HHHH-HHTT--------
T ss_pred             HHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc--------c---HHHH-HHcC--------
Confidence            44444579999999999999999999999999999984  49999999872        2   2233 3433        


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                |.++|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        97 --------------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A           97 --------------------------IKATPTFFFL-RDGQQVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             --------------------------CCEESEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred             --------------------------CCcccEEEEE-cCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence                                      3444988777 999999999988 78899999998875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.49  E-value=1.2e-13  Score=98.91  Aligned_cols=90  Identities=17%  Similarity=0.245  Sum_probs=74.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +++++||+||++||++|+...+.+.++.++++++ +.++.|++|        ...   +.+ ++++              
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~--------~~~---~l~-~~~~--------------   73 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES-FGFYYVDVE--------EEK---TLF-QRFS--------------   73 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT-SEEEEEETT--------TCH---HHH-HHTT--------------
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC--------cCh---hHH-HhcC--------------
Confidence            5789999999999999999999999999999864 999999987        222   233 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus        74 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           74 --------------------LKGVPQILYF-KDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             --------------------CCcCCEEEEE-ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence                                3334999888 799999999999999999999999875

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.49  E-value=8.8e-14  Score=102.50  Aligned_cols=89  Identities=16%  Similarity=0.196  Sum_probs=70.8

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+||++||+||++||++|+.+.+.|.++.++++  ++.++.|++|+        .   .+.+ ++|+             
T Consensus        36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~--------~---~~l~-~~~~-------------   88 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE--------L---KSVA-SDWA-------------   88 (124)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT--------S---HHHH-HHTT-------------
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc--------C---HHHH-HHcC-------------
Confidence            368999999999999999999999999999986  59999998872        2   2233 3433             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                           |..+|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        89 ---------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  124 (124)
T 1xfl_A           89 ---------------------IQAMPTFMFL-KEGKILDKVVGA-KKDELQSTIAKHLA  124 (124)
T ss_dssp             ---------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHCC
T ss_pred             ---------------------CCccCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHhcC
Confidence                                 3334986666 899999999884 88899999988763

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.49  E-value=8.1e-14  Score=102.10  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+...+.|.++.++++++++.++.|++|        ...   +.+ ++++              
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d--------~~~---~~~-~~~~--------------   85 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD--------EQS---QIA-QEVG--------------   85 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETT--------TCH---HHH-HHHT--------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECc--------CCH---HHH-HHcC--------------
Confidence            57899999999999999999999999999998777999999987        221   222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        86 --------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  121 (121)
T 2j23_A           86 --------------------IRAMPTFVFF-KNGQKIDTVVGA-DPSKLQAAITQHSA  121 (121)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHTC
T ss_pred             --------------------CCcccEEEEE-ECCeEEeeEcCC-CHHHHHHHHHHhhC
Confidence                                2334988777 699999999998 89999999998864

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.6e-14  Score=103.06  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011           93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus        93 l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      +.+++++.+. .-+++ .+||+||++||++|+.+.|.|.++.+++++.++.++.|++|.       ..    +.+ ++|+
T Consensus         9 v~~l~~~~f~-~~~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~-------~~----~~~-~~~~   74 (126)
T 1x5e_A            9 VRVITDENWR-ELLEG-DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE-------QP----GLS-GRFI   74 (126)
T ss_dssp             EEECCTTTHH-HHTSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT-------CH----HHH-HHTT
T ss_pred             cEEecHHHHH-HHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC-------CH----HHH-HHcC
Confidence            3344444443 12344 489999999999999999999999999987679999998872       21    223 3433


Q ss_pred             CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          173 AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       173 ~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                        |..+|+++++ ++|++ .++.|..+.+++.+.|++++.
T Consensus        75 ----------------------------------v~~~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~~~~~  110 (126)
T 1x5e_A           75 ----------------------------------INALPTIYHC-KDGEF-RRYQGPRTKKDFINFISDKEW  110 (126)
T ss_dssp             ----------------------------------CCSSSEEEEE-ETTEE-EECCSCCCHHHHHHHHHTCGG
T ss_pred             ----------------------------------CcccCEEEEE-eCCeE-EEeecCCCHHHHHHHHHHHhh
Confidence                                              3334999999 89995 788998899999999987753

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.47  E-value=7.8e-14  Score=98.97  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +.+||+++|+||++||++|+...+.+.++.+++++  +.++.|++|.        .   .+.. ++++            
T Consensus        17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~--------~---~~~~-~~~~------------   70 (105)
T 3m9j_A           17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDD--------C---QDVA-SESE------------   70 (105)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTT--------C---HHHH-HHTT------------
T ss_pred             hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhh--------h---HHHH-HHcC------------
Confidence            34689999999999999999999999999999865  9999998872        2   1222 3333            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                            +..+|+++++ ++|+++.++.|. +.+++.+.|+++|
T Consensus        71 ----------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           71 ----------------------VKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             ----------------------CCBSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             ----------------------CCcCcEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHhC
Confidence                                  3344999999 899999999998 8999999998875

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.47  E-value=9.9e-14  Score=107.70  Aligned_cols=82  Identities=12%  Similarity=0.050  Sum_probs=62.4

Q ss_pred             ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      .+++++||++||+||++|||+|+.+.|.|.+++++++  ++.++.|+.|           +..+.+ ++|..        
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d-----------~~~~~~-~~~~~--------  105 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKG-----------RAEDDL-RQRLA--------  105 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHH-----------HHHHHT-TTTTT--------
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECC-----------CCHHHH-HHHHH--------
Confidence            4567889999999999999999999999999999875  4899999765           222333 23220        


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                        .                     .+..+|+++++|++|+++.++.+
T Consensus       106 --~---------------------~v~~iPt~i~~~~~G~~~~~~g~  129 (167)
T 1z6n_A          106 --L---------------------ERIAIPLVLVLDEEFNLLGRFVE  129 (167)
T ss_dssp             --C---------------------SSCCSSEEEEECTTCCEEEEEES
T ss_pred             --c---------------------CCCCcCeEEEECCCCCEEEEEcC
Confidence              0                     04455999999999999888744

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.47  E-value=4.8e-14  Score=100.50  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|+++|+||++||++|+...+.+.++.++++++ +.++.|++|.       ..    +.. ++++              
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~~--------------   69 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK-LLVAKLDVDE-------NP----KTA-MRYR--------------   69 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT-BEEEEEETTT-------CH----HHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc-eEEEEEECCC-------CH----hHH-HhCC--------------
Confidence            5789999999999999999999999999999864 9999999872       22    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          +..+|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus        70 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           70 --------------------VMSIPTVILF-KDGQPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             --------------------CCcCCEEEEE-eCCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence                                3334999999 899999999999899999999988764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.47  E-value=2.4e-13  Score=101.73  Aligned_cols=91  Identities=8%  Similarity=0.034  Sum_probs=75.1

Q ss_pred             CCCEEEEEEecCC--CCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASR--CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~--C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      .+++|||+||++|  |++|+...|.|.++.++|.++.++|+.|++|           +..+.+ .+|+            
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvD-----------e~~~lA-~~yg------------   88 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLE-----------QSEAIG-DRFG------------   88 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHH-----------HHHHHH-HHHT------------
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECC-----------CCHHHH-HHcC------------
Confidence            4568899999999  9999999999999999997644899999665           344444 5544            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                            |..+|+++++ +||+++.+..|..+.+++.+.|+++++
T Consensus        89 ----------------------V~sIPTlilF-k~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           89 ----------------------AFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             ----------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ----------------------CccCCEEEEE-ECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence                                  4455988777 999999999999999999999998874

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.46  E-value=2.9e-14  Score=114.62  Aligned_cols=108  Identities=11%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC  168 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~  168 (245)
                      ++..+.+++++.+.....+|+++||+||++||++|+.+.|.+.++.++++++ +.++.|++|.        ..   +.+ 
T Consensus        95 ~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~~~--------~~---~l~-  161 (210)
T 3apq_A           95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGD--------DR---MLC-  161 (210)
T ss_dssp             TCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT-BEEEEEETTT--------CH---HHH-
T ss_pred             CCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc-eEEEEEECCc--------cH---HHH-
Confidence            4445556666555544457899999999999999999999999999999765 9999999872        21   233 


Q ss_pred             HhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ++++                                  |..+|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus       162 ~~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~  202 (210)
T 3apq_A          162 RMKG----------------------------------VNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFAMQHVR  202 (210)
T ss_dssp             HHTT----------------------------------CCSSSEEEEE-CTTSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred             HHcC----------------------------------CCcCCeEEEE-ECCCceeEecCCCCHHHHHHHHHHhCc
Confidence            3433                                  3344998888 999999999999999999999998875

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.46  E-value=3.3e-13  Score=96.95  Aligned_cols=90  Identities=16%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+|+++||+||++||++|....+.++++.++++  ++.++.|++|+       ..    +.. ++++             
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------~~----~~~-~~~~-------------   76 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE-------LK----AVA-EEWN-------------   76 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------CH----HHH-HHHH-------------
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc-------cH----HHH-HhCC-------------
Confidence            458999999999999999999999999999986  59999998872       22    222 2222             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                                           +..+|+++++ ++|+++.++.| .+.+++.+.|++++++
T Consensus        77 ---------------------v~~~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~l~~~~~~  113 (113)
T 1ti3_A           77 ---------------------VEAMPTFIFL-KDGKLVDKTVG-ADKDGLPTLVAKHATA  113 (113)
T ss_dssp             ---------------------CSSTTEEEEE-ETTEEEEEEEC-CCTTHHHHHHHHHHHC
T ss_pred             ---------------------CCcccEEEEE-eCCEEEEEEec-CCHHHHHHHHHHhhcC
Confidence                                 3334988777 79999999988 5788999999998864

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.46  E-value=6.6e-14  Score=101.74  Aligned_cols=90  Identities=21%  Similarity=0.283  Sum_probs=70.2

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      +.+.+||+++|+||++||++|+...|.++++.+++   ++.++.|++|        ..   .+.+ ++++          
T Consensus        28 l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~--------~~---~~~~-~~~~----------   82 (117)
T 2xc2_A           28 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVD--------KL---EETA-RKYN----------   82 (117)
T ss_dssp             HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETT--------TS---HHHH-HHTT----------
T ss_pred             HHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECC--------cc---HHHH-HHcC----------
Confidence            34457899999999999999999999999999887   5999999887        22   2233 3433          


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                              |..+|+++++ ++|+++.++.| .+.+++.+.|+++|
T Consensus        83 ------------------------v~~~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           83 ------------------------ISAMPTFIAI-KNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             ------------------------CCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             ------------------------CCccceEEEE-eCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence                                    3334986666 89999999988 57888999988764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.46  E-value=1.7e-13  Score=100.48  Aligned_cols=91  Identities=20%  Similarity=0.246  Sum_probs=70.3

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+.+||+++|+||++||++|+...|.+.++.++++  ++.++.|++|+       ..   .+.+ ++++           
T Consensus        33 ~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~-------~~---~~~~-~~~~-----------   88 (124)
T 1faa_A           33 KAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ-------EN---KTLA-KELG-----------   88 (124)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS-------TT---HHHH-HHHC-----------
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc-------ch---HHHH-HHcC-----------
Confidence            33478999999999999999999999999999986  48999998761       11   2222 3333           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                             |..+|+ ++++++|+++.++.|.. .+++.+.|++++
T Consensus        89 -----------------------v~~~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           89 -----------------------IRVVPT-FKILKENSVVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             -----------------------CSSSSE-EEEEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred             -----------------------CCeeeE-EEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence                                   333497 55669999999998875 888999998875

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.45  E-value=3.4e-13  Score=101.20  Aligned_cols=105  Identities=15%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             EEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011           92 TVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF  171 (245)
Q Consensus        92 ~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~  171 (245)
                      .+.+++++.+...-.+++.+||+||++||++|+...+.|.++.++++++ +.++.|++|.        ..   +.. ++|
T Consensus        34 ~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~---~l~-~~~  100 (140)
T 1v98_A           34 WVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKVNVDE--------HP---GLA-ARY  100 (140)
T ss_dssp             ---------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT--------CH---HHH-HHT
T ss_pred             ccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCC--------CH---HHH-HHC
Confidence            3444555555433233434999999999999999999999999999864 9999999872        21   222 333


Q ss_pred             CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       172 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      +                                  |..+|+++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus       101 ~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          101 G----------------------------------VRSVPTLVLF-RRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             T----------------------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             C----------------------------------CCccCEEEEE-eCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            3                                  3334998888 799999999999899999999999885

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.45  E-value=1.3e-13  Score=103.00  Aligned_cols=93  Identities=9%  Similarity=0.122  Sum_probs=69.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh---HHHHHHHHHhcCCCcceeeccCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN---PEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      ++ ++||+||++||++|+.+.|.+.++.++++   +.++.|+++..     ...   ++..+.+ ++|+           
T Consensus        31 ~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~-----~~~~~~d~~~~l~-~~~~-----------   89 (135)
T 3emx_A           31 QG-DAILAVYSKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSL-----IGERELSAARLEM-NKAG-----------   89 (135)
T ss_dssp             TS-SEEEEEEETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTT-----CCHHHHHHHHHHH-HHHT-----------
T ss_pred             CC-cEEEEEECCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCc-----hhhhhhhhhHHHH-HHcC-----------
Confidence            44 99999999999999999999999998875   88999988621     111   1222222 2322           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                             |..+|++++++ +|+++.++.|..+.+.+.+.++++++
T Consensus        90 -----------------------v~~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~i~~~~~  126 (135)
T 3emx_A           90 -----------------------VEGTPTLVFYK-EGRIVDKLVGATPWSLKVEKAREIYG  126 (135)
T ss_dssp             -----------------------CCSSSEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             -----------------------CceeCeEEEEc-CCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence                                   44559666665 99999999999999999999998864

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.45  E-value=2.8e-13  Score=100.04  Aligned_cols=88  Identities=10%  Similarity=0.195  Sum_probs=70.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +++++||+||++||++|+...|.|.++.++++  ++.++.|++|+        ..   +.+ ++|+              
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~--------~~---~l~-~~~~--------------   87 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN--------NS---EIV-SKCR--------------   87 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT--------CH---HHH-HHTT--------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC--------CH---HHH-HHcC--------------
Confidence            68899999999999999999999999999984  49999999872        21   222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.| .+.+++.+.|+++++
T Consensus        88 --------------------v~~~Pt~~i~-~~G~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           88 --------------------VLQLPTFIIA-RSGKMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             --------------------CCcccEEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence                                3334986666 89999999988 588999999999875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.45  E-value=4.2e-13  Score=101.30  Aligned_cols=90  Identities=13%  Similarity=0.001  Sum_probs=68.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .||++||+||++||++|+.+.|.|.++.++++++ +.++.|++|+       ..    +.+ ++                
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~-------~~----~~~-~~----------------   72 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDITE-------VP----DFN-KM----------------   72 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-------CC----TTT-TS----------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEcccc-------CH----HHH-HH----------------
Confidence            4899999999999999999999999999999765 9999998872       11    011 11                


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe---------cCCCCC-hHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER---------YPPTTS-PFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~---------~~g~~~-~~~l~~~l~~ll~  244 (245)
                           |+             |..+|+++++ ++|+++..         ..|..+ .+++.+.|+++++
T Consensus        73 -----~~-------------i~~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~  121 (142)
T 1qgv_A           73 -----YE-------------LYDPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  121 (142)
T ss_dssp             -----SC-------------SCSSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             -----cC-------------CCCCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence                 11             4555998888 58888863         445443 7888888888764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.44  E-value=1.8e-13  Score=101.02  Aligned_cols=104  Identities=8%  Similarity=-0.030  Sum_probs=75.7

Q ss_pred             EEcCCCCeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh----CCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           93 VKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT----QGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        93 l~~~~G~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~----~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      +.+++++.+...-. .++++||+||++||++|+.+.|.+.++.+++..    .++.++.|++|        ..   .+.+
T Consensus        17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~--------~~---~~l~   85 (127)
T 3h79_A           17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE--------KY---PDVI   85 (127)
T ss_dssp             CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT--------TC---HHHH
T ss_pred             eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc--------cc---HhHH
Confidence            44455555442222 478999999999999999999999999988752    24888888877        22   2233


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE-EecCCCCChHHHHHHHHHH
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~-~~~~g~~~~~~l~~~l~~l  242 (245)
                       ++++                                  |..+|++++++++|++. ..+.|..+.+++.+.|+++
T Consensus        86 -~~~~----------------------------------v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           86 -ERMR----------------------------------VSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             -HHTT----------------------------------CCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             -HhcC----------------------------------CccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence             3433                                  34449999998777753 5788988999999998864

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.44  E-value=2.6e-13  Score=103.58  Aligned_cols=88  Identities=11%  Similarity=0.170  Sum_probs=71.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+.+.|.+.++.++++  ++.++.|++|.        ..   +.+ ++|+              
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~--------~~---~l~-~~~~--------------   82 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG--------VP---EVS-EKYE--------------   82 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT--------SH---HHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC--------CH---HHH-HHcC--------------
Confidence            58999999999999999999999999999984  49999999872        21   223 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|++++++ +|+++.++.|. +.+++.+.|++++.
T Consensus        83 --------------------v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l~  118 (153)
T 2wz9_A           83 --------------------ISSVPTFLFFK-NSQKIDRLDGA-HAPELTKKVQRHAS  118 (153)
T ss_dssp             --------------------CCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHSC
T ss_pred             --------------------CCCCCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence                                33449999998 99999999885 67889999988864

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.44  E-value=2.9e-13  Score=95.71  Aligned_cols=90  Identities=19%  Similarity=0.324  Sum_probs=70.6

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+.+||+++|+||++||++|+...+.+.++.++++  ++.++.|++|.        .   .+.+ ++++           
T Consensus        15 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~--------~---~~~~-~~~~-----------   69 (104)
T 2vim_A           15 NENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ--------N---EEAA-AKYS-----------   69 (104)
T ss_dssp             HTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT--------C---HHHH-HHTT-----------
T ss_pred             HhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC--------C---HHHH-HHcC-----------
Confidence            34478999999999999999999999999999986  59999999872        2   1223 3333           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                             +..+|+++++ ++|+++.++.| .+.+++.+.|+++|
T Consensus        70 -----------------------v~~~Pt~~~~-~~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           70 -----------------------VTAMPTFVFI-KDGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             -----------------------CCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             -----------------------CccccEEEEE-eCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence                                   2334986666 59999999998 58889999988764

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.44  E-value=2.6e-13  Score=97.65  Aligned_cols=88  Identities=9%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +++++||+||++||++|+...+.|.++.+++.  ++.++.|++|.        .   .+.+ ++++              
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~---~~l~-~~~~--------------   69 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA--------R---PELM-KELG--------------   69 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG--------C---HHHH-HHTT--------------
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC--------C---HHHH-HHcC--------------
Confidence            56899999999999999999999999998876  48999998761        1   2222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|++.+
T Consensus        70 --------------------v~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           70 --------------------FERVPTLVFI-RDGKVAKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             --------------------CCSSCEEEEE-ESSSEEEEEESCCCHHHHHHHHHTC-
T ss_pred             --------------------CcccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHHh
Confidence                                3344999999 99999999999989999998887653

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.43  E-value=4.6e-13  Score=95.59  Aligned_cols=87  Identities=15%  Similarity=0.191  Sum_probs=68.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||+++|+||++||++|+...|.+.++.++++  ++.++.|++|.        .   .+.. ++++              
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~--------~---~~~~-~~~~--------------   71 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ--------C---QGTA-ATNN--------------   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT--------S---HHHH-HHTT--------------
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc--------C---HHHH-HhcC--------------
Confidence            58899999999999999999999999999984  49999998872        2   2223 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ ++|+++.++.|. ..+++.+.|++++
T Consensus        72 --------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           72 --------------------ISATPTFQFF-RNKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             --------------------CCcccEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHhc
Confidence                                3344988777 899999999885 4566888888875

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.43  E-value=3.2e-13  Score=109.43  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=80.3

Q ss_pred             CeEEEcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011           90 DFTVKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC  168 (245)
Q Consensus        90 df~l~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~  168 (245)
                      .-....++.+.+.-. .-++|++||+||++||++|+.+.|.+.+++++++++ +.++.|++|.       ..    +.+ 
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~-------~~----~l~-   77 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----GTA-   77 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CT----TTG-
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCC-------CH----HHH-
Confidence            334444555544321 125789999999999999999999999999999876 9999998872       11    011 


Q ss_pred             HhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ++                     |+             |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        78 ~~---------------------~~-------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           78 PK---------------------YG-------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  118 (222)
T ss_dssp             GG---------------------GT-------------CCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             HH---------------------cC-------------CCcCCEEEEE-ECCeEEEEeccccChHHHHHHHHhhcc
Confidence            22                     22             4555988888 599999999999999999999998874

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.42  E-value=2.5e-13  Score=98.51  Aligned_cols=85  Identities=22%  Similarity=0.332  Sum_probs=67.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+...|.|.++.+++++  +.++.|++|.        ..   +.+ ++++              
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~--------~~---~l~-~~~~--------------   80 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE--------SP---DIA-KECE--------------   80 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT--------CH---HHH-HHTT--------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC--------CH---HHH-HHCC--------------
Confidence            588999999999999999999999999999875  9999998872        21   233 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                          |..+|+++++ ++|+++.++.|.. .+++.+.|++
T Consensus        81 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           81 --------------------VTAMPTFVLG-KDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             --------------------CCSBSEEEEE-ETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             --------------------CCcccEEEEE-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence                                3334987665 8999999999987 7788777764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.42  E-value=5.5e-13  Score=94.59  Aligned_cols=90  Identities=18%  Similarity=0.299  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +.+|++++|+||++||++|+...+.+.++.+++++ ++.++.|++|        ..   .+.. ++++            
T Consensus        17 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~--------~~---~~~~-~~~~------------   71 (106)
T 1xwb_A           17 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVD--------EC---EDIA-MEYN------------   71 (106)
T ss_dssp             HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT--------TC---HHHH-HHTT------------
T ss_pred             hcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEecc--------ch---HHHH-HHcC------------
Confidence            34689999999999999999999999999999874 4999999887        22   1223 3333            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                            +..+|+++++ ++|+++.++.| .+.+++.+.|+++|
T Consensus        72 ----------------------v~~~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           72 ----------------------ISSMPTFVFL-KNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             ----------------------CCSSSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             ----------------------CCcccEEEEE-cCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence                                  3334986555 89999999999 68888998888764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.42  E-value=2.5e-13  Score=99.96  Aligned_cols=89  Identities=20%  Similarity=0.238  Sum_probs=67.4

Q ss_pred             CCCEEEEEEecCCCC--------------CChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011          107 KGKVLLIVNVASRCG--------------LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus       107 ~gk~vll~F~~t~C~--------------~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      +||++||+||++||+              +|+...|.+.++.++++++ +.++.|++|.       ..    +       
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~-~~~~~vd~d~-------~~----~-------   80 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----G-------   80 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS-------CT----T-------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH----H-------
Confidence            589999999999999              9999999999999998765 9999998872       10    1       


Q ss_pred             CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          173 AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       173 ~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                     +.+.|+             |.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus        81 ---------------l~~~~~-------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 ---------------TAPKYG-------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             ---------------TGGGGT-------------CCBSSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             ---------------HHHHcC-------------CCccCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence                           112222             5556999999 99999999999989999999988765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.42  E-value=3.2e-13  Score=97.34  Aligned_cols=88  Identities=11%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+...+.+.++.++++  ++.++.|++|        ...   +.+ ++++              
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~--------~~~---~~~-~~~~--------------   76 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVD--------EVS---EVT-EKEN--------------   76 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT--------TTH---HHH-HHTT--------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECC--------CCH---HHH-HHcC--------------
Confidence            68999999999999999999999999999986  4999999887        221   233 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        77 --------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  112 (112)
T 1syr_A           77 --------------------ITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIEKYAA  112 (112)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHTTC-
T ss_pred             --------------------CCcccEEEEE-ECCcEEEEEeCC-CHHHHHHHHHHhhC
Confidence                                3334986555 799999999998 89999999988763

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.42  E-value=4.7e-13  Score=96.93  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=70.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+...+.++++.++++  ++.++.|++|        ..   .+.. ++++              
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~--------~~---~~~~-~~~~--------------   78 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD--------EL---KDVA-EAYN--------------   78 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETT--------TS---HHHH-HHTT--------------
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcc--------cC---HHHH-HHcC--------------
Confidence            48999999999999999999999999999986  5999999887        22   2233 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          +..+|+++++ ++|+++.++.| .+.+++.+.|+++++
T Consensus        79 --------------------v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           79 --------------------VEAMPTFLFI-KDGEKVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             --------------------CCSBSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             --------------------CCcCcEEEEE-eCCeEEEEecC-CCHHHHHHHHHHHhc
Confidence                                3334987777 89999999988 478899999998874

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.42  E-value=2.9e-13  Score=98.52  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=67.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .|++++|+||++||++|+.+.|.|.++.++++   ..++.+.+|.     ..+.+...+++ ++++              
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~-----~~~~~~~~~~~-~~~~--------------   84 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK---AHIYFINSEE-----PSQLNDLQAFR-SRYG--------------   84 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTC-----GGGHHHHHHHH-HHHT--------------
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC---CeEEEEECCC-----cCcHHHHHHHH-HHcC--------------
Confidence            57899999999999999999999999998875   4466666651     01223344444 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|+
T Consensus        85 --------------------i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           85 --------------------IPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred             --------------------CCCCCeEEEE-ECCEEEEEecCCCCHHHHHHHhh
Confidence                                3444999888 59999999999988888887764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.39  E-value=1.5e-13  Score=100.33  Aligned_cols=101  Identities=18%  Similarity=0.260  Sum_probs=75.2

Q ss_pred             EEcCCCCeeecC-CC--CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026011           93 VKDIDGKDVPLS-KF--KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT  169 (245)
Q Consensus        93 l~~~~G~~v~l~-~~--~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~  169 (245)
                      +.+++|...++. .+  .||++||+||++||++|+...+.|.++.+++  .++.++.|++|.       .    .+.. +
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-------~----~~~~-~   70 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK-------N----GNAA-D   70 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT-------C----HHHH-H
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC-------C----HHHH-H
Confidence            345566655554 23  4889999999999999999999999999998  459999999872       2    1223 3


Q ss_pred             hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC---CCcEEEecCCCCChHHHHHHHHHH
Q 026011          170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK---NGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       170 ~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~---~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      +|+                                  |..+|++++++.   +|+++.++.|.. .+++++.+++.
T Consensus        71 ~~~----------------------------------i~~~Pt~~~~~~~~~~G~~~~~~~G~~-~~~l~~~~~~~  111 (118)
T 2f51_A           71 AYG----------------------------------VSSIPALFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKF  111 (118)
T ss_dssp             HTT----------------------------------CCSSSEEEEEEEETTEEEEEEEEESCC-HHHHHHHHHHH
T ss_pred             hcC----------------------------------CCCCCEEEEEeCCCCcceEEEeecCCC-HHHHHHHHHHh
Confidence            433                                  334499999976   499999999875 45688877765

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.39  E-value=4.4e-13  Score=97.58  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=72.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .|+++||+||++||++|+...+.+.++.++++++ +.++.|++|.       ..    +.+ ++++              
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~-~~~~--------------   81 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVAKLDVDT-------NP----ETA-RNFQ--------------   81 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHH-HHTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH----HHH-HhcC--------------
Confidence            5789999999999999999999999999998764 9999999872       21    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus        82 --------------------i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           82 --------------------VVSIPTLILF-KDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             --------------------CCcCCEEEEE-ECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence                                3334988777 699999999999889999988877654

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.39  E-value=4.3e-13  Score=97.16  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +||++||+||++||++|+...+.+.++.+++++.  ++.++.|.++.       ..    +                   
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~----~-------------------   72 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------ES----D-------------------   72 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------CC----S-------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC-------CH----H-------------------
Confidence            6889999999999999999999999999999864  36677776541       10    1                   


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE--EecCCCCChHHHHHHHHHHhh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI--ERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~--~~~~g~~~~~~l~~~l~~ll~  244 (245)
                         +.+.|+             |..+|+++++ ++|+++  .++.|..+.+++.+.|+++++
T Consensus        73 ---~~~~~~-------------v~~~Pt~~~~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           73 ---LAQQYG-------------VRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             ---SHHHHT-------------CCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             ---HHHHCC-------------CCcccEEEEE-eCCCcCCcccccCccCHHHHHHHHHhccC
Confidence               112222             4455999999 789877  888998899999999988764

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.38  E-value=3.3e-13  Score=98.54  Aligned_cols=90  Identities=13%  Similarity=0.021  Sum_probs=70.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|++||+||++||++|+...|.+.++.+++++ ++.++.|++|.        ..   +.. ++++              
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~--------~~---~~~-~~~~--------------   72 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA--------YP---QTC-QKAG--------------   72 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT--------CH---HHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC--------CH---HHH-HHcC--------------
Confidence            578999999999999999999999999999986 49999999872        21   222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC----CChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----TSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~----~~~~~l~~~l~~ll~  244 (245)
                                          |..+|++++++++|++ .++.|.    .+.+++.+.|+++++
T Consensus        73 --------------------v~~~Pt~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           73 --------------------IKAYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             --------------------CCSSSEEEEEEEEGGG-TEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             --------------------CCccceEEEEeCCCcc-ceeeccccCcCCHHHHHHHHHHHHH
Confidence                                3344999999888773 444443    688999999998875

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.38  E-value=1.3e-12  Score=93.34  Aligned_cols=89  Identities=15%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +++++||+||++||++|+...+.+.++.+++.+.  ++.++.|++|        ...   +.. ++++            
T Consensus        20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--------~~~---~l~-~~~~------------   75 (111)
T 3uvt_A           20 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT--------AER---NIC-SKYS------------   75 (111)
T ss_dssp             HSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT--------TCH---HHH-HHTT------------
T ss_pred             cCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecc--------ccH---hHH-HhcC------------
Confidence            3789999999999999999999999999987644  5888889876        222   233 3433            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                            |..+|+++++ ++|+++.++.|..+.+++.+.|++.
T Consensus        76 ----------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           76 ----------------------VRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             ----------------------CCSSSEEEEE-ETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             ----------------------CCcccEEEEE-eCCcEEEeccCCcCHHHHHHHHHhc
Confidence                                  3334987777 8999999999999999999988763

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=2.4e-13  Score=101.64  Aligned_cols=91  Identities=19%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+-+++++||+||++||++|+.+.|.+.++.+++++.++.++.|++|+       .    .+.+ +++++..+.      
T Consensus        22 ~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~----~~~~-~~~~v~~~~------   83 (137)
T 2dj0_A           22 ERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR-------Y----TDVS-TRYKVSTSP------   83 (137)
T ss_dssp             HHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT-------C----HHHH-HHTTCCCCS------
T ss_pred             hcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc-------C----HHHH-HHccCcccC------
Confidence            334567999999999999999999999999999987569999998762       2    2333 555543110      


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHH
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI  235 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l  235 (245)
                                            .+..+|+++++ ++|+++.++.|..+.+++
T Consensus        84 ----------------------~~~~~Pt~~~~-~~G~~~~~~~G~~~~~~l  112 (137)
T 2dj0_A           84 ----------------------LTKQLPTLILF-QGGKEAMRRPQIDKKGRA  112 (137)
T ss_dssp             ----------------------SSSCSSEEEEE-SSSSEEEEESCBCSSSCB
T ss_pred             ----------------------CcCCCCEEEEE-ECCEEEEEecCcCchHHH
Confidence                                  03345998888 799999999887765544

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.36  E-value=1.2e-12  Score=106.66  Aligned_cols=104  Identities=14%  Similarity=0.188  Sum_probs=78.5

Q ss_pred             EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011           93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTR  170 (245)
Q Consensus        93 l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~  170 (245)
                      +..++++.+.....+||+++|+||++||++|+.+.|.+.++++++++++  +.++.|++|        ..   .+.+ ++
T Consensus        17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--------~~---~~l~-~~   84 (241)
T 3idv_A           17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT--------SA---SVLA-SR   84 (241)
T ss_dssp             EEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETT--------TC---HHHH-HH
T ss_pred             cEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEecc--------CC---HHHH-Hh
Confidence            3445555555444478999999999999999999999999999998776  888888876        22   2233 44


Q ss_pred             cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       171 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      |+                                  |..+|++++++ +|+++ .+.|..+.+++.+.+++.+.
T Consensus        85 ~~----------------------------------v~~~Pt~~~~~-~g~~~-~~~g~~~~~~l~~~i~~~~~  122 (241)
T 3idv_A           85 FD----------------------------------VSGYPTIKILK-KGQAV-DYEGSRTQEEIVAKVREVSQ  122 (241)
T ss_dssp             TT----------------------------------CCSSSEEEEEE-TTEEE-ECCSCSCHHHHHHHHHHHHS
T ss_pred             cC----------------------------------CCcCCEEEEEc-CCCcc-cccCcccHHHHHHHHhhccC
Confidence            33                                  33449988885 67766 58898899999999988753

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.05  E-value=6.3e-14  Score=99.26  Aligned_cols=103  Identities=17%  Similarity=0.271  Sum_probs=75.1

Q ss_pred             EEcCCCCeeecC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011           93 VKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF  171 (245)
Q Consensus        93 l~~~~G~~v~l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~  171 (245)
                      +.+++++.+.-. .-.+|+++|.||++||++|+...+.+.++.++++++ +.++.|++|.        .   .+.. +++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~--------~---~~~~-~~~   69 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK-VKVVKVNVDE--------N---PNTA-AQY   69 (106)
Confidence            344444444321 125789999999999999999999999999998763 8888887651        1   1111 222


Q ss_pred             CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       172 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      +                                  +...|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus        70 ~----------------------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 2yj7_A           70 G----------------------------------IRSIPTLLLF-KNGQVVDRLVGAQPKEALKERIDKHL  106 (106)
Confidence            1                                  3344999888 89999999999888888988888764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.35  E-value=7.4e-12  Score=85.16  Aligned_cols=83  Identities=14%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCc
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT  188 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~  188 (245)
                      .++|+.||++||++|+...+.|+++.+++++ ++.++.|++|+       ..    +                      .
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~----~----------------------~   48 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVME-------NP----Q----------------------K   48 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSS-------SC----C----------------------T
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCC-------CH----H----------------------H
Confidence            5789999999999999999999999999875 49999998762       10    0                      1


Q ss_pred             chhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      .+.|+             +..+|++++   +|++  ++.|..+.+++.+.|+++|
T Consensus        49 ~~~~~-------------v~~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~l   85 (85)
T 1fo5_A           49 AMEYG-------------IMAVPTIVI---NGDV--EFIGAPTKEALVEAIKKRL   85 (85)
T ss_dssp             TTSTT-------------TCCSSEEEE---TTEE--ECCSSSSSHHHHHHHHHHC
T ss_pred             HHHCC-------------CcccCEEEE---CCEE--eeecCCCHHHHHHHHHHhC
Confidence            11121             445598777   8988  7888888999999998764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.34  E-value=3.8e-12  Score=96.10  Aligned_cols=88  Identities=13%  Similarity=0.135  Sum_probs=62.4

Q ss_pred             CCEEEEEEecCC--CCCChHHHHHHHHHHHHhhhCCcE--EEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          108 GKVLLIVNVASR--CGLTPSNYSELSHLYEKYKTQGFE--ILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       108 gk~vll~F~~t~--C~~C~~~~~~l~~l~~~~~~~g~~--vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      ++.+||+||++|  |++|+...|.|.++.++| ++ +.  ++.|++|           +..+.+ ++|+           
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~-v~~~~~~Vd~d-----------~~~~la-~~~~-----------   88 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ-FDWQVAVADLE-----------QSEAIG-DRFN-----------   88 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT-SCCEEEEECHH-----------HHHHHH-HTTT-----------
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc-cceeEEEEECC-----------CCHHHH-HhcC-----------
Confidence            345777898877  999999999999999999 43 88  9999765           233333 4433           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                             |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        89 -----------------------V~~iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           89 -----------------------VRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             -----------------------CCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             -----------------------CCcCCeEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence                                   4445999999 999999999999899999999998874

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.31  E-value=2.3e-12  Score=96.32  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +||++||+||++||++|+.+.|.|.++.+++.  ++.++.|++|.       ..        ++|+              
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~-------~~--------~~~~--------------   77 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNS-------CI--------EHYH--------------   77 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSS-------SC--------SSCC--------------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhc-------Cc--------ccCC--------------
Confidence            46899999999999999999999999999985  38899988762       10        1111              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC-------ChHHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT-------SPFQIEKDIQKL  242 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~-------~~~~l~~~l~~l  242 (245)
                                          |..+|++++++ +|+++.++.|..       +.++|++.|++.
T Consensus        78 --------------------i~~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           78 --------------------DNCLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             --------------------SSCCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             --------------------CCCCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence                                44559988885 999999888865       567787777764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.30  E-value=6e-12  Score=85.61  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcc
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTA  189 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~  189 (245)
                      ++|+.||++||++|+...|.|+++.++++++ +.++.|++|+       ..    +.+ ++++                 
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~~----~~~-~~~~-----------------   52 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIMV-------DR----EKA-IEYG-----------------   52 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS-CCEEEECTTT-------CG----GGG-GGTC-----------------
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH----HHH-HhCC-----------------
Confidence            4688999999999999999999999999754 9999998762       11    111 2221                 


Q ss_pred             hhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          190 PVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                       +..+|++++   +|++  ++.|..+.+++.+.|+++++
T Consensus        53 -----------------v~~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~le   85 (85)
T 1nho_A           53 -----------------LMAVPAIAI---NGVV--RFVGAPSREELFEAINDEME   85 (85)
T ss_dssp             -----------------SSCSSEEEE---TTTE--EEECSSCCHHHHHHHHHHCC
T ss_pred             -----------------ceeeCEEEE---CCEE--EEccCCCHHHHHHHHHHHhC
Confidence                             444598877   8998  67777788999999998763

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.30  E-value=2.9e-13  Score=103.29  Aligned_cols=92  Identities=9%  Similarity=0.086  Sum_probs=60.2

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHH--HHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLY--EKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~--~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      ..||+|||+||++||++|+.+.|.+.+..  .++.+  ..++.|.+|.      +..+.    . .+             
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~------e~~~~----~-~~-------------   95 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMH------ETTDK----N-LS-------------   95 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESS------CCSCG----G-GC-------------
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecC------Cchhh----H-hh-------------
Confidence            36899999999999999999999887642  22222  3466666651      01000    0 11             


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-------CCh---HHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-------TSP---FQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-------~~~---~~l~~~l~~ll~  244 (245)
                              |+             +.++|+++++|++|+++.+..|.       ..+   +++.+.+++.++
T Consensus        96 --------~~-------------v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~  145 (151)
T 3ph9_A           96 --------PD-------------GQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALR  145 (151)
T ss_dssp             --------TT-------------CCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHS
T ss_pred             --------cC-------------CCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHH
Confidence                    11             33449999999999999998887       333   455555555543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.29  E-value=7.5e-13  Score=97.58  Aligned_cols=89  Identities=21%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+||++||+||++||++|+...+.|.++.++++  ++.++.|++|.       ..    +.. ++++             
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------~~----~~~-~~~~-------------   86 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE-------LK----EVA-EKYN-------------   86 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT-------SG----GGH-HHHT-------------
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc-------hH----HHH-HHcC-------------
Confidence            368999999999999999999999999999986  48899988762       11    111 2222             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                           |..+|+++++ ++|+++.++.| .+.+++.+.|+++++
T Consensus        87 ---------------------v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~  122 (130)
T 1wmj_A           87 ---------------------VEAMPTFLFI-KDGAEADKVVG-ARKDDLQNTIVKHVG  122 (130)
T ss_dssp             ---------------------CCSSCCCCBC-TTTTCCBCCCT-TCTTTHHHHHHHHTS
T ss_pred             ---------------------CCccceEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHHh
Confidence                                 3344876665 89999998888 478899999998875

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.28  E-value=6.9e-12  Score=89.97  Aligned_cols=86  Identities=9%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++++|+|+++|||+|+...|.++++.++  + ++.++.|.+|        ....+.+.+.++++               
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~-~v~~~~vdVd--------e~r~~Sn~IA~~~~---------------   77 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R-DMDGYYLIVQ--------QERDLSDYIAKKTN---------------   77 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H-TCCEEEEEGG--------GGHHHHHHHHHHHT---------------
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C-CceEEEEEee--------cCchhhHHHHHHhC---------------
Confidence            78999999999999999999999999884  3 4999999887        33344333435544               


Q ss_pred             cchhhhhhhcccCCCCCCcccc-ceeEEEECCCCcEEEe-cCCCCChHHHHHHH
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKW-NFEKFLVDKNGKVIER-YPPTTSPFQIEKDI  239 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~-~P~~~liD~~G~i~~~-~~g~~~~~~l~~~l  239 (245)
                                         |.| .|+++|+ +||+++++ ..+..+.+.|++.|
T Consensus        78 -------------------V~h~sPq~il~-k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           78 -------------------VKHESPQAFYF-VNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             -------------------CCCCSSEEEEE-ETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             -------------------CccCCCeEEEE-ECCEEEEEeeccccCHHHHHHhh
Confidence                               443 5988888 99999987 45555777777654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.28  E-value=1.8e-11  Score=98.86  Aligned_cols=91  Identities=11%  Similarity=0.053  Sum_probs=70.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh---CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~---~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+++++|.||++||++|+.+.|.+.++.+++++   .++.++.|++|.        .   .+.. ++|+           
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~-----------  189 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE--------Y---PEWA-DQYN-----------  189 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG--------C---HHHH-HHTT-----------
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc--------C---HHHH-HhCC-----------
Confidence            445559999999999999999999999999983   359999998761        1   1222 3333           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                             |..+|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus       190 -----------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  226 (226)
T 1a8l_A          190 -----------------------VMAVPKIVIQ-VNGEDRVEFEGAYPEKMFLEKLLSALS  226 (226)
T ss_dssp             -----------------------CCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -----------------------CcccCeEEEE-eCCceeEEEcCCCCHHHHHHHHHHhhC
Confidence                                   3344986666 799999999999999999999998763

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.27  E-value=7e-12  Score=113.63  Aligned_cols=108  Identities=11%  Similarity=0.111  Sum_probs=80.9

Q ss_pred             EEcCCCCeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026011           93 VKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNPEIKEFACT  169 (245)
Q Consensus        93 l~~~~G~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~  169 (245)
                      +.+++++.+...-. .||++||+||++||++|+.+.|.+.++++++++  .++.++.|++|.         ++..+.+ +
T Consensus        14 V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~---------d~~~~l~-~   83 (519)
T 3t58_A           14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE---------ETNSAVC-R   83 (519)
T ss_dssp             SEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS---------GGGHHHH-H
T ss_pred             cEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc---------cccHHHH-H
Confidence            33444444432222 368999999999999999999999999999987  359999998861         1223333 4


Q ss_pred             hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC---CCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK---NGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       170 ~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~---~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      +|+                                  |..+|+++++++   +|+++..+.|..+.+++.+.|+++++
T Consensus        84 ~~~----------------------------------V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~  127 (519)
T 3t58_A           84 EFN----------------------------------IAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALE  127 (519)
T ss_dssp             HTT----------------------------------CCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHT
T ss_pred             HcC----------------------------------CcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHh
Confidence            433                                  444599999997   78888888888899999999998875

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.26  E-value=1.5e-11  Score=100.83  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=69.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      .++++||+||++||++|+...|.+.++++++++  .++.++.|++|.      +..   .+.+ ++|+            
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~------~~~---~~l~-~~~~------------   86 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE------ETN---SAVC-RDFN------------   86 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS------TTT---HHHH-HHTT------------
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc------hhh---HHHH-HHcC------------
Confidence            458999999999999999999999999999987  359999999851      111   2333 4433            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCC-----CcEEEecCCCCChHHHHHHHHHHhh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-----GKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-----G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                            |..+|+++++++.     |+++ .+.| .+.+++.+.|.+++.
T Consensus        87 ----------------------v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~  127 (244)
T 3q6o_A           87 ----------------------IPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALE  127 (244)
T ss_dssp             ----------------------CCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHH
T ss_pred             ----------------------CCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHH
Confidence                                  3445999999863     4444 5556 588999999988875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.26  E-value=9.9e-12  Score=90.79  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=63.6

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +++|||+||++||++|+...|.|.++.++|.+  +.++.|++|+        .      + ++|+               
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~--v~f~kvd~d~--------~------~-~~~~---------------   70 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE--TKFVKAIVNS--------C------I-QHYH---------------   70 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT--SEEEEEEGGG--------T------S-TTCC---------------
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--CEEEEEEhHH--------h------H-HHCC---------------
Confidence            45999999999999999999999999999964  8999998761        0      1 2211               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC-------ChHHHHHHHHH
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT-------SPFQIEKDIQK  241 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~-------~~~~l~~~l~~  241 (245)
                                         |..+|+++++ ++|+++.++.|..       +.++++..|.+
T Consensus        71 -------------------v~~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           71 -------------------DNCLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             -------------------GGGCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             -------------------CCCCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence                               4555987777 8999999987764       45667766654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.23  E-value=1.5e-11  Score=95.64  Aligned_cols=89  Identities=8%  Similarity=-0.055  Sum_probs=58.1

Q ss_pred             CCeeecCCCCCCEEEEEEecCCCCCChHHHHH---HHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCC
Q 026011           98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSE---LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE  174 (245)
Q Consensus        98 G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~---l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~  174 (245)
                      .+.+.....+||+|||+||++||++|+.+.+.   ..++.+.+.+ ++.++.|..|+       .++....|. +.    
T Consensus        29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de-------~~~l~~~y~-~~----   95 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREE-------RPDIDNIYM-TV----   95 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTT-------CHHHHHHHH-HH----
T ss_pred             HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcc-------cCcHHHHHH-HH----
Confidence            34455555679999999999999999988773   2455565554 37778887652       233223332 10    


Q ss_pred             cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEe
Q 026011          175 FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER  225 (245)
Q Consensus       175 ~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~  225 (245)
                                   ...+++             +.++|+++++|++|++++.
T Consensus        96 -------------~q~~~g-------------v~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A           96 -------------CQIILG-------------RGGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             -------------HHHHHS-------------CCCSSEEEEECTTSCEEEE
T ss_pred             -------------HHHHcC-------------CCCCcceeeECCCCCceee
Confidence                         000111             4455999999999999876

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.18  E-value=1.3e-11  Score=89.55  Aligned_cols=93  Identities=11%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhh-hCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      +.+.+||+||++||++|+..-+.+...++... .+.+.++.|.+|.      +..                         
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~------~~~-------------------------   65 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRD------PLP-------------------------   65 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTS------CCC-------------------------
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCC------CCc-------------------------
Confidence            44689999999999999987765544333211 1126778887762      000                         


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ..+...|+             |..+|++++++ ||+.+.+..|..+.+++.+.|++++.
T Consensus        66 ~~la~~~~-------------V~g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           66 PGLELARP-------------VTFTPTFVLMA-GDVESGRLEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             TTCBCSSC-------------CCSSSEEEEEE-TTEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHCC-------------CCCCCEEEEEE-CCEEEeeecCCCCHHHHHHHHHHHHh
Confidence            00111111             55569999998 99999999999999999999998874

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.16  E-value=6e-11  Score=100.35  Aligned_cols=92  Identities=13%  Similarity=0.118  Sum_probs=70.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++||+||++||++|+.+.|.+.++.+++++. +.++.|++|.      +.   ..+.+ ++++              
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~------~~---~~~l~-~~~~--------------   88 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDL------NK---NKALC-AKYD--------------   88 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTS------TT---THHHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccC------cc---CHHHH-HhCC--------------
Confidence            4789999999999999999999999999999876 9999999872      11   12333 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCC----------------cEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG----------------KVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G----------------~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|++++++.++                .....|.|..+.+.|.+.+.+.+
T Consensus        89 --------------------I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           89 --------------------VNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             --------------------CCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             --------------------CCccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence                                34449988886543                14678899999999999887654

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.15  E-value=1.4e-10  Score=95.28  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh---CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~---~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      +++|+++++.||++||++|+...|.++++.+++++   .++.+..|.++.        ..   +.+ ++|+         
T Consensus       135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~--------~~---~~~-~~~~---------  193 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE--------NP---DIA-DKYG---------  193 (243)
T ss_dssp             HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT--------CH---HHH-HHTT---------
T ss_pred             HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc--------CH---HHH-HHcC---------
Confidence            45788999999999999999999999999999842   458888888762        11   222 3333         


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                               |..+|++++   +|+++  +.|..+.+++.+.|++.+.
T Consensus       194 -------------------------V~~vPt~~i---~G~~~--~~G~~~~~~l~~~l~~~~~  226 (243)
T 2hls_A          194 -------------------------VMSVPSIAI---NGYLV--FVGVPYEEDFLDYVKSAAE  226 (243)
T ss_dssp             -------------------------CCSSSEEEE---TTEEE--EESCCCHHHHHHHHHHHHT
T ss_pred             -------------------------CeeeCeEEE---CCEEE--EeCCCCHHHHHHHHHHHhh
Confidence                                     334498877   78875  7788889999999988764

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.14  E-value=5.7e-11  Score=103.79  Aligned_cols=105  Identities=15%  Similarity=0.219  Sum_probs=76.6

Q ss_pred             EEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh-----CCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-----QGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        93 l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-----~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      +.+++++.+...--+++++||.||++||++|+...|.+.++.+++++     .++.++.|++|.        .   .+.+
T Consensus         7 v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~--------~---~~l~   75 (382)
T 2r2j_A            7 ITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ--------H---SDIA   75 (382)
T ss_dssp             -CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT--------C---HHHH
T ss_pred             eEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc--------c---HHHH
Confidence            34445544432112578999999999999999999999999999853     238899998872        2   2333


Q ss_pred             HHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEE-ecCCCCChHHHHHHHHHHhh
Q 026011          168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE-RYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       168 ~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~-~~~g~~~~~~l~~~l~~ll~  244 (245)
                       ++++                                  |.++|+++++ ++|+++. .|.|..+.+.+.+.|++.+.
T Consensus        76 -~~~~----------------------------------v~~~Pt~~~f-~~G~~~~~~~~G~~~~~~l~~~i~~~~~  117 (382)
T 2r2j_A           76 -QRYR----------------------------------ISKYPTLKLF-RNGMMMKREYRGQRSVKALADYIRQQKS  117 (382)
T ss_dssp             -HHTT----------------------------------CCEESEEEEE-ETTEEEEEECCSCCSHHHHHHHHHHHHS
T ss_pred             -HhcC----------------------------------CCcCCEEEEE-eCCcEeeeeecCcchHHHHHHHHHHhcc
Confidence             4443                                  3444988776 6899887 48999999999999988763

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.13  E-value=3.7e-10  Score=75.27  Aligned_cols=37  Identities=8%  Similarity=0.005  Sum_probs=32.0

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011          111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP  148 (245)
Q Consensus       111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs  148 (245)
                      ..|+||++||++|+...+.+.++.++++++ ++++.|+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~-~~~~~v~   38 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGID-AEFEKIK   38 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCC-EEEEEEC
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCc-eEEEEec
Confidence            358999999999999999999999998753 8888873

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.13  E-value=4e-10  Score=85.90  Aligned_cols=92  Identities=10%  Similarity=0.018  Sum_probs=66.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      +||+|||+|+++||..|+.+-...   .++.+.+.+ ++.+|.+.+|        + .+..++. ++|++          
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~--------~-~~~~~l~-~~y~v----------   99 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHD--------S-EEGQRYI-QFYKL----------   99 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESS--------S-HHHHHHH-HHHTC----------
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecC--------C-HhHHHHH-HHcCC----------
Confidence            589999999999999999776544   344444444 3777777665        3 3344555 55442          


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                              ...|++++||++ |+.+..+.| .+++++.+.|+++++
T Consensus       100 ------------------------~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~  136 (153)
T 2dlx_A          100 ------------------------GDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLG  136 (153)
T ss_dssp             ------------------------CSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHH
T ss_pred             ------------------------CCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHH
Confidence                                    223999999998 877777766 799999999988874

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.13  E-value=9.7e-11  Score=96.15  Aligned_cols=42  Identities=12%  Similarity=0.035  Sum_probs=38.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +|++|||+||++||++|+.+.|.|.++.++|.+  +.++.|.++
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~--v~f~kVd~d  173 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM--VKFCKIKAS  173 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT--SEEEEEEHH
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC--CEEEEEeCC
Confidence            488999999999999999999999999999964  899999754

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.13  E-value=2.9e-10  Score=92.40  Aligned_cols=90  Identities=13%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      .+++++|+||++||++|+...|.+.++.+++.+++  +.++.|.+|        ..   .+.+ ++++            
T Consensus       146 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~--------~~---~~l~-~~~~------------  201 (241)
T 3idv_A          146 DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT--------AE---TDLA-KRFD------------  201 (241)
T ss_dssp             HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETT--------TC---HHHH-HHTT------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECC--------CC---HHHH-HHcC------------
Confidence            57899999999999999999999999999998654  888888876        22   2233 4443            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                            |..+|++++++ +|+++. |.|..+.+++.+.|++.+.
T Consensus       202 ----------------------v~~~Pt~~~~~-~g~~~~-~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          202 ----------------------VSGYPTLKIFR-KGRPYD-YNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             ----------------------CCSSSEEEEEE-TTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred             ----------------------CcccCEEEEEE-CCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence                                  33349888885 688766 8898899999999988753

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.11  E-value=3.5e-11  Score=108.05  Aligned_cols=90  Identities=19%  Similarity=0.210  Sum_probs=70.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .||++||+||++||++|+.+.|.+.++.+++++. ++.++.|..+.        .    +.. ++               
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~--------~----~~~-~~---------------  420 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA--------N----DVP-SP---------------  420 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTS--------S----CCC-TT---------------
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCc--------h----hhH-hh---------------
Confidence            4899999999999999999999999999999875 57788887651        0    000 11               


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEecCCCCChHHHHHHHHHHh
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~~g~~~~~~l~~~l~~ll  243 (245)
                            |+             |.++|++++++++|++ +.++.|..+.+++.+.|++.+
T Consensus       421 ------~~-------------v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  460 (481)
T 3f8u_A          421 ------YE-------------VRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA  460 (481)
T ss_dssp             ------CC-------------CCSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHC
T ss_pred             ------CC-------------CcccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhc
Confidence                  11             4555999999988874 678889999999999998764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.10  E-value=4e-11  Score=87.93  Aligned_cols=47  Identities=11%  Similarity=0.128  Sum_probs=41.3

Q ss_pred             cCCCCCCEEEEEEecC-------CCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          103 LSKFKGKVLLIVNVAS-------RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       103 l~~~~gk~vll~F~~t-------~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +.+.+||+++|+||++       ||++|+...|.|.++.+++++ ++.++.|+++
T Consensus        19 ~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~   72 (123)
T 1wou_A           19 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVG   72 (123)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECC
T ss_pred             HHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECC
Confidence            3444689999999999       999999999999999999875 4999999885

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.09  E-value=1.2e-10  Score=94.07  Aligned_cols=85  Identities=12%  Similarity=0.109  Sum_probs=63.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      +|++|||+||++||++|+...|.|.++.++|.  ++.++.|.+|            ....+ ++                
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~------------~~~l~-~~----------------  167 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS------------NTGAG-DR----------------  167 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH------------HHTCS-TT----------------
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC------------cHHHH-HH----------------
Confidence            46899999999999999999999999999985  4899888642            00111 11                


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCCh-------HHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSP-------FQIEKDIQK  241 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~-------~~l~~~l~~  241 (245)
                           |+             |..+|+++++ ++|+++.++.|..+.       ++|++.|.+
T Consensus       168 -----~~-------------i~~~PTl~~~-~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~  210 (217)
T 2trc_P          168 -----FS-------------SDVLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             -----SC-------------GGGCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             -----CC-------------CCCCCEEEEE-ECCEEEEEEeCCcccCcccCCHHHHHHHHHH
Confidence                 11             4556998888 599999999887653       667766654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.07  E-value=4.9e-10  Score=96.64  Aligned_cols=88  Identities=9%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHH-------HHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSE-------LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD  179 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~-------l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  179 (245)
                      +++++||+||++||+ |+...|.       +.++.+++++.++.++.|++|.        .   .+.+ ++++       
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~--------~---~~l~-~~~~-------   86 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK--------E---AKLA-KKLG-------   86 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT--------T---HHHH-HHHT-------
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC--------C---HHHH-HhcC-------
Confidence            468999999999999 9888888       8888988887779999999872        2   2233 4433       


Q ss_pred             ccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          180 KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       180 d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                                 |.+.|+++++ ++|+ +..|.|..+.+.+.+.|++.+
T Consensus        87 ---------------------------v~~~Pt~~~~-~~g~-~~~~~G~~~~~~l~~~i~~~~  121 (350)
T 1sji_A           87 ---------------------------FDEEGSLYVL-KGDR-TIEFDGEFAADVLVEFLLDLI  121 (350)
T ss_dssp             ---------------------------CCSTTEEEEE-ETTE-EEEECSCCCHHHHHHHHHTTS
T ss_pred             ---------------------------CCccceEEEE-ECCc-EEEecCCCCHHHHHHHHHHhc
Confidence                                       3344998888 7888 458889889999999887654

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.07  E-value=3.2e-10  Score=102.37  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=73.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++||.||++||++|+...|.+.++.+++++.++.++.|++|.        .   .+.+ ++|+              
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~--------------   83 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE--------N---QDLC-MEHN--------------   83 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT--------C---HHHH-HHTT--------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC--------C---HHHH-HhcC--------------
Confidence            478999999999999999999999999999988779999999872        2   2333 4544              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcE--EEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i--~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |.++|+++++ ++|++  +..|.|..+.+.+.+.|.+.+
T Consensus        84 --------------------v~~~Pt~~~~-~~g~~~~~~~~~G~~~~~~l~~~l~~~~  121 (504)
T 2b5e_A           84 --------------------IPGFPSLKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQS  121 (504)
T ss_dssp             --------------------CCSSSEEEEE-ETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             --------------------CCcCCEEEEE-eCCccccceeecCCCCHHHHHHHHHHhc
Confidence                                3344988888 56776  788999999999999998765

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.04  E-value=2.2e-12  Score=92.55  Aligned_cols=40  Identities=10%  Similarity=0.033  Sum_probs=33.8

Q ss_pred             CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhh
Q 026011           99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK  138 (245)
Q Consensus        99 ~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~  138 (245)
                      +.+.|++..||++||+||++||++|+.+.|.|.++.++++
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~   42 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP   42 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence            3456777788999999999999999999999998876553

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.04  E-value=4.5e-10  Score=100.79  Aligned_cols=89  Identities=15%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .|+++||.||++||++|+...|.+.++.+++++. +.++.|++|.        .   .+.+ ++++              
T Consensus        20 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~--------~---~~l~-~~~~--------------   72 (481)
T 3f8u_A           20 SAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA--------N---TNTC-NKYG--------------   72 (481)
T ss_dssp             SSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT--------C---HHHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC--------C---HHHH-HhcC--------------
Confidence            3489999999999999999999999999999887 8999998872        2   2233 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |.++|+++++ ++|+++..|.|..+.+.+.+.+.+.+
T Consensus        73 --------------------v~~~Ptl~~~-~~g~~~~~~~G~~~~~~l~~~~~~~~  108 (481)
T 3f8u_A           73 --------------------VSGYPTLKIF-RDGEEAGAYDGPRTADGIVSHLKKQA  108 (481)
T ss_dssp             --------------------CCEESEEEEE-ETTEEEEECCSCSSHHHHHHHHHHHT
T ss_pred             --------------------CCCCCEEEEE-eCCceeeeecCccCHHHHHHHHHhhc
Confidence                                3445987777 88988899999999999999998875

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.02  E-value=7.2e-10  Score=89.66  Aligned_cols=86  Identities=14%  Similarity=0.111  Sum_probs=65.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++|++||++||++|+...+.++++.+++.  ++.++.|++|.        .   .+.+ ++|+              
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~--------~---~~l~-~~~~--------------  186 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDASE--------N---QDLA-EQFQ--------------  186 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGG--------C---HHHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCC--------C---HHHH-HHcC--------------
Confidence            45566889999999999999999999999983  49999998762        1   2223 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|++++   +|+ +.++.|..+.+++.+.|+++++
T Consensus       187 --------------------v~~~Pt~~~---~G~-~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          187 --------------------VVGVPKIVI---NKG-VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             --------------------CCSSSEEEE---GGG-TEEEESCCCHHHHHHHHHHHHH
T ss_pred             --------------------CcccCEEEE---CCE-EEEeeCCCCHHHHHHHHHHHhh
Confidence                                334498777   788 4668888899999999988764

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.00  E-value=3.7e-10  Score=97.58  Aligned_cols=87  Identities=15%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      .+|+++|.||++||++|+...|.+.++.++++++ ++.++.|..+.       ..      + ++++             
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~-------~~------~-~~~~-------------  318 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA-------NE------V-EAVK-------------  318 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTT-------CB------C-SSCC-------------
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCc-------cc------h-hhcC-------------
Confidence            5789999999999999999999999999999875 46677776541       00      1 1111             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEecCCCCChHHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                           |...|++++++++ |+...+|.|..+.+++.+.|++
T Consensus       319 ---------------------v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~  354 (361)
T 3uem_A          319 ---------------------VHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLES  354 (361)
T ss_dssp             ---------------------CCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHTT
T ss_pred             ---------------------CcccCeEEEEECCCCcceeEecCCCCHHHHHHHHHh
Confidence                                 4445999999665 6777899999899999888865

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.95  E-value=1.7e-09  Score=96.20  Aligned_cols=44  Identities=18%  Similarity=0.220  Sum_probs=39.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-C------cEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-G------FEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g------~~vv~Vs~D  150 (245)
                      .+|++||+||++||++|+.+.|.+.++++++++. +      +.++.|++|
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d   91 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA   91 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETT
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECC
Confidence            4589999999999999999999999999999743 2      899999987

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.95  E-value=2.3e-09  Score=101.76  Aligned_cols=92  Identities=13%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .+++|++++|.||++||++|+.++|.|.+++++++++ +.++.|++|+        ...   .+ ++++           
T Consensus       451 ~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~-v~~~~vd~~~--------~~~---~~-~~~~-----------  506 (780)
T 3apo_A          451 PASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGTLDCTI--------HEG---LC-NMYN-----------  506 (780)
T ss_dssp             CTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT--------CHH---HH-HHTT-----------
T ss_pred             HHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEeCCC--------CHH---HH-HHcC-----------
Confidence            3457899999999999999999999999999999865 9999998872        222   22 3433           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                             |...|+++++ ++|++ +.+.|..+.+++.+.|+++++
T Consensus       507 -----------------------v~~~Pt~~~~-~~g~~-~~~~g~~~~~~l~~fi~~~~~  542 (780)
T 3apo_A          507 -----------------------IQAYPTTVVF-NQSSI-HEYEGHHSAEQILEFIEDLRN  542 (780)
T ss_dssp             -----------------------CCSSSEEEEE-ETTEE-EEECSCSCHHHHHHHHHHHHS
T ss_pred             -----------------------CCcCCeEEEE-cCCce-eeecCcccHHHHHHHHHhhcc
Confidence                                   2333999999 56877 788898899999999988764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.93  E-value=8.5e-10  Score=99.61  Aligned_cols=102  Identities=17%  Similarity=0.069  Sum_probs=72.3

Q ss_pred             EEcCCCCeeecCC-CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhh-h-CCcEEEEEecCCCCCCCCCChHHHHHHHHH
Q 026011           93 VKDIDGKDVPLSK-FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-T-QGFEILAFPCNQFGGQEPGSNPEIKEFACT  169 (245)
Q Consensus        93 l~~~~G~~v~l~~-~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~-~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~  169 (245)
                      +.+++|+.+...- -.+|++||+||++||++|+.+.|.+.++.++++ + .++.++.|..+                   
T Consensus       360 v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~-------------------  420 (504)
T 2b5e_A          360 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT-------------------  420 (504)
T ss_dssp             EEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG-------------------
T ss_pred             ceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCC-------------------
Confidence            4444455443221 247899999999999999999999999999997 3 24666666543                   


Q ss_pred             hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE--EEecCCCCChHHHHHHHHHHh
Q 026011          170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       170 ~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i--~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      ....               .. |+             |..+|+++++ ++|+.  +.++.|..+.+++.+.|++.+
T Consensus       421 ~~~~---------------~~-~~-------------v~~~Pt~~~~-~~G~~~~~~~~~G~~~~~~l~~~i~~~~  466 (504)
T 2b5e_A          421 ENDV---------------RG-VV-------------IEGYPTIVLY-PGGKKSESVVYQGSRSLDSLFDFIKENG  466 (504)
T ss_dssp             GCCC---------------SS-CC-------------CSSSSEEEEE-CCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             cccc---------------cc-CC-------------ceecCeEEEE-eCCceecceEecCCCCHHHHHHHHHhcC
Confidence            0000               00 11             4555998888 78876  678889889999999998765

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.90  E-value=1.8e-09  Score=83.62  Aligned_cols=134  Identities=10%  Similarity=0.068  Sum_probs=78.2

Q ss_pred             CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCC------------------------
Q 026011           98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFG------------------------  153 (245)
Q Consensus        98 G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~------------------------  153 (245)
                      +....+.+..+|++|+.||..|||+|....+.|.++.+++++  ++++.+.+...+                        
T Consensus        12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~   89 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN--VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHW   89 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHH
T ss_pred             CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC--EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHH
Confidence            445566677899999999999999999999999999998765  666655543110                        


Q ss_pred             ----CCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          154 ----GQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       154 ----~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                          .....+.+.+.+++ ++.|++...+.. ..+.........   ..........|.++|+++|   +|+   .+.|.
T Consensus        90 ~lf~~~~~~~~~~l~~~a-~~~Gld~~~~~~-~~~~~~~~~~v~---~~~~~a~~~gv~gtPt~~i---~g~---~~~G~  158 (175)
T 3gyk_A           90 ALMGMSGKANETGVLRIA-REVGLDTEQLQR-DMEAPEVTAHIA---QSMALAQKLGFNGTPSFVV---EDA---LVPGF  158 (175)
T ss_dssp             HHHTCSSCCSHHHHHHHH-HHTTCCHHHHHH-HTTCHHHHHHHH---HHHHHHHHHTCCSSSEEEE---TTE---EECSC
T ss_pred             HHHhcCCCCCHHHHHHHH-HHcCCCHHHHHH-HHhChHHHHHHH---HHHHHHHHcCCccCCEEEE---CCE---EeeCC
Confidence                01112344555555 455554332210 000000000010   0000000112777797665   565   45687


Q ss_pred             CChHHHHHHHHHHhh
Q 026011          230 TSPFQIEKDIQKLVV  244 (245)
Q Consensus       230 ~~~~~l~~~l~~ll~  244 (245)
                      .+.+.+++.|+++++
T Consensus       159 ~~~~~l~~~i~~~l~  173 (175)
T 3gyk_A          159 VEQSQLQDAVDRARK  173 (175)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            899999999998875

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.88  E-value=1.1e-09  Score=103.88  Aligned_cols=90  Identities=12%  Similarity=0.014  Sum_probs=70.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .||++||+||++||++|+.+.|.+.++.++++++ +.++.|.+|.        ..   +.+ ++++              
T Consensus       674 ~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~-~~~~~vd~~~--------~~---~~~-~~~~--------------  726 (780)
T 3apo_A          674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK-VRAGKVDCQA--------YP---QTC-QKAG--------------  726 (780)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT--------CH---HHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-ceEEEEECCC--------CH---HHH-HhcC--------------
Confidence            4789999999999999999999999999999764 9999998872        21   222 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC----CCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP----TTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g----~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|    ..+.+++.+.|+++++
T Consensus       727 --------------------v~~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~  767 (780)
T 3apo_A          727 --------------------IKAYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKLE  767 (780)
T ss_dssp             --------------------CCSSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHTT
T ss_pred             --------------------CCcCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHHH
Confidence                                3334999888 88887766655    4688999999998875

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.86  E-value=1.1e-08  Score=88.81  Aligned_cols=89  Identities=13%  Similarity=0.095  Sum_probs=67.1

Q ss_pred             CCCEEEEEEecCCCCCChHHH------HHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          107 KGKVLLIVNVASRCGLTPSNY------SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~------~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      .++++||.||++||++|...-      |.+.++.+.+++.++.+..|.++        ..   .+.+ ++|+        
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~--------~~---~~l~-~~~~--------   88 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE--------KD---AAVA-KKLG--------   88 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETT--------TT---HHHH-HHHT--------
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCc--------cc---HHHH-HHcC--------
Confidence            468999999999999974322      57788888887767999999887        22   2333 4444        


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                                |.+.|+++++ ++|+++ .|.|..+.+.|.+.|++.+
T Consensus        89 --------------------------V~~~PTl~~f-~~G~~~-~y~G~~~~~~i~~~i~~~~  123 (367)
T 3us3_A           89 --------------------------LTEEDSIYVF-KEDEVI-EYDGEFSADTLVEFLLDVL  123 (367)
T ss_dssp             --------------------------CCSTTEEEEE-ETTEEE-ECCSCCSHHHHHHHHHHHH
T ss_pred             --------------------------CCcCceEEEE-ECCcEE-EeCCCCCHHHHHHHHHHhc
Confidence                                      3444988888 478875 8889999999999998765

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.83  E-value=7.4e-09  Score=76.82  Aligned_cols=89  Identities=9%  Similarity=-0.010  Sum_probs=67.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++++++||++ |++|+...|.|.++.++|+++ +.++.|++|+       .    .+.+ ++|++             
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~-------~----~~~a-~~~gi-------------   74 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA-------F----GAHA-GNLNL-------------   74 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT-------T----GGGT-TTTTC-------------
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH-------h----HHHH-HHcCC-------------
Confidence            356899999999 899999999999999999876 9999998762       1    1122 33332             


Q ss_pred             CcchhhhhhhcccCCCCCCcccc--ceeEEEECC-CCcEEEecC--CCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKW--NFEKFLVDK-NGKVIERYP--PTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~--~P~~~liD~-~G~i~~~~~--g~~~~~~l~~~l~~ll~  244 (245)
                                           ..  +|++++++. +|+. ++..  |..+.++|.+.|+.+++
T Consensus        75 ---------------------~~~~iPtl~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~  115 (133)
T 2djk_A           75 ---------------------KTDKFPAFAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             ---------------------CSSSSSEEEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             ---------------------CcccCCEEEEEecCcCcc-cCCCCccccCHHHHHHHHHHHHc
Confidence                                 22  399888874 5777 5665  88899999999998874

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.80  E-value=1.5e-08  Score=78.83  Aligned_cols=43  Identities=9%  Similarity=0.083  Sum_probs=37.8

Q ss_pred             CCCEEEEEEec-------CCCCCChHHHHHHHHHHHHhh-----hCCcEEEEEecC
Q 026011          107 KGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYK-----TQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~-------t~C~~C~~~~~~l~~l~~~~~-----~~g~~vv~Vs~D  150 (245)
                      ++.+|||+||+       .||++|+...|.+.++.+++.     ++ +.+..|.+|
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~-v~f~kvD~d   90 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSL-NLFFTVDVN   90 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCC-EEEEEEETT
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCC-EEEEEEECc
Confidence            45689999999       499999999999999999997     33 888889887

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=98.75  E-value=3.3e-08  Score=77.70  Aligned_cols=129  Identities=12%  Similarity=0.110  Sum_probs=86.1

Q ss_pred             ccccCcccC--eEEEcC--C---------C--CeeecCCC--CCCEEEEEEe-cCCCCCChH-HHHHHHHHHHHh-hhCC
Q 026011           82 AATEKSLYD--FTVKDI--D---------G--KDVPLSKF--KGKVLLIVNV-ASRCGLTPS-NYSELSHLYEKY-KTQG  141 (245)
Q Consensus        82 ~~~g~~~pd--f~l~~~--~---------G--~~v~l~~~--~gk~vll~F~-~t~C~~C~~-~~~~l~~l~~~~-~~~g  141 (245)
                      ..+|+++|.  +++.=+  +         |  +++++++.  +||.|||++. +.+.|.|.. ++|.+.+.++++ +.+|
T Consensus        26 ~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kG  105 (199)
T 4h86_A           26 DLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKE  105 (199)
T ss_dssp             TTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSC
T ss_pred             HHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcC
Confidence            347888884  443221  1         2  35677664  7887766654 899999976 699999988875 7788


Q ss_pred             c-EEEEEecCCCCCCCCCChHHHHHHHHHhcCC----CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEE
Q 026011          142 F-EILAFPCNQFGGQEPGSNPEIKEFACTRFKA----EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV  216 (245)
Q Consensus       142 ~-~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~li  216 (245)
                      + +|+.|++|        ++..+++|. +..+.    .++.+.|.+   .+..+.++......+    ......+..+||
T Consensus       106 vd~I~ciSVN--------D~FVm~AW~-k~~~~~~~~~i~~laD~~---~eftkalGl~~~~~~----gg~RS~Rya~IV  169 (199)
T 4h86_A          106 VDQVIVVTVD--------NPFANQAWA-KSLGVKDTTHIKFASDPG---CAFTKSIGFELAVGD----GVYWSGRWAMVV  169 (199)
T ss_dssp             CCEEEEEESS--------CHHHHHHHH-HHTTCCCCSSEEEEECGG---GHHHHHTTCEEEEET----TEEEECSEEEEE
T ss_pred             CcEEEEEEcC--------CHHHHHHHH-HHhcccccccccccCCcc---hHHHHhcCceeecCC----CcceeeEEEEEE
Confidence            7 79999998        899999998 55444    466665432   234455554322111    113344778899


Q ss_pred             CCCCcEEEecC
Q 026011          217 DKNGKVIERYP  227 (245)
Q Consensus       217 D~~G~i~~~~~  227 (245)
                      | ||+|.+.+.
T Consensus       170 d-DGvV~~~~v  179 (199)
T 4h86_A          170 E-NGIVTYAAK  179 (199)
T ss_dssp             E-TTEEEEEEE
T ss_pred             E-CCEEEEEEE
Confidence            8 999988764

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.74  E-value=1.6e-08  Score=79.78  Aligned_cols=43  Identities=12%  Similarity=0.114  Sum_probs=39.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+++|+.||..|||+|....+.+.++.+++.+ ++.+..+.++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            588999999999999999999999999999987 4888888876

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.74  E-value=5.5e-09  Score=84.07  Aligned_cols=47  Identities=11%  Similarity=0.140  Sum_probs=37.6

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+.+...+||++|+.||..|||+|+...+.|.++.+    .+++++.+.+.
T Consensus        78 ~~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~p  124 (216)
T 1eej_A           78 MIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LGITVRYLAFP  124 (216)
T ss_dssp             SEEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TTEEEEEEECC
T ss_pred             CeeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----CCcEEEEEECC
Confidence            345555678999999999999999999999988765    25888877653

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.68  E-value=4.2e-09  Score=75.87  Aligned_cols=38  Identities=8%  Similarity=0.185  Sum_probs=27.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +++++++ ||++||++|+...+.|.++..+     +.++.|..+
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~   55 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS-----YKVVELDEL   55 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGS
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC-----eEEEEccCC
Confidence            4566666 9999999999999988876432     455555443

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.65  E-value=2.9e-08  Score=78.02  Aligned_cols=43  Identities=14%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+++|+.||..|||+|....+.|.++.+++.+ ++.+..+.++
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEehh
Confidence            688999999999999999999999999999887 4888777764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.62  E-value=1.6e-07  Score=75.43  Aligned_cols=92  Identities=21%  Similarity=0.247  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEEecC-CCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          105 KFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       105 ~~~gk~vll~F~~t-~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      +.+++++|++||++ ||++|+...+.+.++.+. .+ ++.++.|.+|        .+ +..+.+ ++|+           
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~-~v~~~~vd~~--------~~-~~~~~~-~~~~-----------   75 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD-KLSYEIVDFD--------TP-EGKELA-KRYR-----------   75 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT-TEEEEEEETT--------SH-HHHHHH-HHTT-----------
T ss_pred             hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CC-ceEEEEEeCC--------Cc-ccHHHH-HHcC-----------
Confidence            34567888999999 999999999999998754 33 4899999876        31 123444 4544           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEE-EecCCCCChHHHHHHHHHHh
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~-~~~~g~~~~~~l~~~l~~ll  243 (245)
                                             |..+|+++++ ++|+.. .++.|..+.+++.+.+..++
T Consensus        76 -----------------------v~~~Pt~~~~-~~g~~~~~~~~G~~~~~~l~~~l~~~l  112 (226)
T 1a8l_A           76 -----------------------IDRAPATTIT-QDGKDFGVRYFGLPAGHEFAAFLEDIV  112 (226)
T ss_dssp             -----------------------CCSSSEEEEE-ETTBCCSEEEESCCCTTHHHHHHHHHH
T ss_pred             -----------------------CCcCceEEEE-cCCceeeEEEeccCcHHHHHHHHHHHH
Confidence                                   2334988887 566543 56767767777777776654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.58  E-value=5.2e-08  Score=66.92  Aligned_cols=75  Identities=7%  Similarity=0.026  Sum_probs=50.8

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchh
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPV  191 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~  191 (245)
                      |+.||++||++|....+.|.++..++      +.-|++|+       +++    .+ ++|+.                  
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~------~~~vdid~-------~~~----l~-~~~g~------------------   46 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA------FFSVFIDD-------DAA----LE-SAYGL------------------   46 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC------EEEEECTT-------CHH----HH-HHHTT------------------
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh------eEEEECCC-------CHH----HH-HHhCC------------------
Confidence            67899999999998888887654332      45677762       332    22 34332                  


Q ss_pred             hhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          192 YQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       192 ~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                      . +|++++  .||+.+.   |..+.++|.+.|++.+.
T Consensus        47 ----------------~-vPtl~~--~~G~~v~---g~~~~~~L~~~l~~~~~   77 (87)
T 1ttz_A           47 ----------------R-VPVLRD--PMGRELD---WPFDAPRLRAWLDAAPH   77 (87)
T ss_dssp             ----------------T-CSEEEC--TTCCEEE---SCCCHHHHHHHHHTCC-
T ss_pred             ----------------C-cCeEEE--ECCEEEe---CCCCHHHHHHHHHHHHH
Confidence                            1 286655  7899875   66788899998887653

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.54  E-value=1e-07  Score=75.00  Aligned_cols=43  Identities=12%  Similarity=-0.038  Sum_probs=37.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+++|+.||..|||+|....+.|.++.+++++ .+.+..+.++
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~   63 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHVV   63 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEeccc
Confidence            578999999999999999999999999999876 4888777763

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.54  E-value=2e-07  Score=75.15  Aligned_cols=91  Identities=12%  Similarity=0.097  Sum_probs=63.9

Q ss_pred             CCCCEEEEEE----ecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          106 FKGKVLLIVN----VASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       106 ~~gk~vll~F----~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      .++.++|+.|    |+.||++|+..+|.+.++++++.+ ..+.+..|.+|        ..   .+.+ ++|+        
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~--------~~---~~l~-~~~~--------   78 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPF--------TH---KEET-EKYG--------   78 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTT--------TC---HHHH-HHTT--------
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCc--------cc---HHHH-HHcC--------
Confidence            3444555555    488899999999999999888843 23888888776        22   3333 4544        


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                                |+++|++++++ +|+...+|.|..+.+++...+..++
T Consensus        79 --------------------------v~~~Ptl~~~~-~~~~~~~~~G~~~~~~l~~~~~~~~  114 (229)
T 2ywm_A           79 --------------------------VDRVPTIVIEG-DKDYGIRYIGLPAGLEFTTLINGIF  114 (229)
T ss_dssp             --------------------------CCBSSEEEEES-SSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred             --------------------------CCcCcEEEEEC-CCcccceecCCccHHHHHHHHHHHH
Confidence                                      34449888885 5777778888877888888777654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.45  E-value=2.2e-07  Score=66.16  Aligned_cols=38  Identities=24%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+|+.||++||++|....+.|.++.+++   |+.+.-|++|
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId   67 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS---WFELEVINID   67 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS---CCCCEEEETT
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence            5688899999999999999999998775   4788888877

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.40  E-value=7.9e-07  Score=72.55  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             CCCEEEEEEec--CCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCC
Q 026011          107 KGKVLLIVNVA--SRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV  183 (245)
Q Consensus       107 ~gk~vll~F~~--t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~  183 (245)
                      .++++||.||+  +||+    ..|.+.++.+++.+ .++.|..|++|+.+      -....+.+ ++|+           
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g------~~~~~~l~-~~~~-----------   78 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYG------DKLNMELS-EKYK-----------   78 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSS------SCCSHHHH-HHTT-----------
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCccc------chhhHHHH-HHcC-----------
Confidence            46799999999  9998    88999999999874 35889999876200      01113333 4544           


Q ss_pred             CCCCcchhhhhhhcccCCCCCCccc--cceeEEEECCCCc--EEEecCCCCChHHHHHHHHHH
Q 026011          184 NGPNTAPVYQFLKSSAGGFLGDLVK--WNFEKFLVDKNGK--VIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~i~--~~P~~~liD~~G~--i~~~~~g~~~~~~l~~~l~~l  242 (245)
                                             |.  .+|+++++ ++|+  ....|.|..+.+.|.+.|++.
T Consensus        79 -----------------------V~~~~~PTl~~f-~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           79 -----------------------LDKESYPVFYLF-RDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             -----------------------CCGGGCSEEEEE-ETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             -----------------------CCCCCCCEEEEE-eCCCcCcceeecCCCCHHHHHHHHHHh
Confidence                                   33  34888777 6676  456888888888998888764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.39  E-value=1.3e-06  Score=79.21  Aligned_cols=82  Identities=15%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++.+..||++||++|+...|.|+++..++.  ++.+..|..|+        .   .+.+ ++|+              
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~--------~---~~~~-~~~~--------------  167 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT--------F---QNEI-TERN--------------  167 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT--------C---HHHH-HHTT--------------
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechh--------h---HHHH-HHhC--------------
Confidence            46788999999999999999999999988876  48998898762        2   2333 4443              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                          |..+|++++   ||+.+..  |..+.+++.+.|++
T Consensus       168 --------------------i~svPt~~i---~g~~~~~--G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          168 --------------------VMGVPAVFV---NGKEFGQ--GRMTLTEIVAKVDT  197 (521)
T ss_dssp             --------------------CCSSSEEEE---TTEEEEE--SCCCHHHHHHHHCC
T ss_pred             --------------------CCccCEEEE---CCEEEec--CCCCHHHHHHHHhh
Confidence                                333498766   8888765  77788888887654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.38  E-value=6.6e-07  Score=73.08  Aligned_cols=137  Identities=8%  Similarity=0.023  Sum_probs=71.6

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH--------Hhc
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC--------TRF  171 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~--------~~~  171 (245)
                      .+.+..-.+|++|+.|+..|||+|....+.+.++.++  + +++|+.+.+...   .+++.......++        +.+
T Consensus        89 ~i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g-~v~v~~~~~p~~---~~~s~~~a~a~~~a~d~~~~~~~~  162 (241)
T 1v58_A           89 WLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS--G-KVQLRTLLVGVI---KPESPATAAAILASKDPAKTWQQY  162 (241)
T ss_dssp             CEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T-SEEEEEEECCCS---STTHHHHHHHHHHSSSHHHHHHHH
T ss_pred             CceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC--C-cEEEEEEECCcC---CCcHHHHHHHHHHccCHHHHHHHH
Confidence            3455555688999999999999999999999887764  2 487777665311   1222222211110        111


Q ss_pred             CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       172 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ...|.. .+.+.........-..+...........|.++|++++.|.+|++ .+..|..+.++|.+.|++.+.
T Consensus       163 ~~~~~~-~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          163 EASGGK-LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             HHTTTC-CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC---
T ss_pred             HHHhcc-CCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHHH
Confidence            111100 00000000000000000000000001127788999999889976 566788889999888876653

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.37  E-value=1.9e-06  Score=70.61  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=64.5

Q ss_pred             CCCEEEEEEe--cCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          107 KGKVLLIVNV--ASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       107 ~gk~vll~F~--~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      .+++|||.||  ++||+    ..|.+.++.+++.+  .++.|..|++|+.+      .+...+.+ ++|+          
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g------~~~n~~la-~~~~----------   90 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYG------ELENKALG-DRYK----------   90 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSST------TCTTHHHH-HHTT----------
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccc------ccccHHHH-HHhC----------
Confidence            4679999999  99998    88999999999865  35899999987210      00123334 4544          


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccc--cceeEEEECCCCcE--EEec--CCCCChHHHHHHHHHHh
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVK--WNFEKFLVDKNGKV--IERY--PPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~--~~P~~~liD~~G~i--~~~~--~g~~~~~~l~~~l~~ll  243 (245)
                                              |.  .+|+++++.  |++  ...|  .|..+.++|.+.|++.+
T Consensus        91 ------------------------V~~~~~PTl~~F~--G~~~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           91 ------------------------VDDKNFPSIFLFK--GNADEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             ------------------------CCTTSCCEEEEES--SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             ------------------------CCcCCCCeEEEEe--CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence                                    33  349888884  773  5567  78888999999888753

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.35  E-value=1e-06  Score=68.93  Aligned_cols=43  Identities=14%  Similarity=0.148  Sum_probs=37.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .++++|+.||..+||+|....+.+.++.+++.++ +++..+.+.
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~-v~~~~~p~~   66 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKD-VRFTLVPAV   66 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-EEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCc-eEEEEeCcc
Confidence            6788999999999999999999999999988764 888777763

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.32  E-value=1.6e-06  Score=69.34  Aligned_cols=40  Identities=13%  Similarity=0.131  Sum_probs=32.2

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      -.+|++|+.||..|||+|+...+.|.++.+    .|+++..+.+
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~~  123 (211)
T 1t3b_A           84 KNEKHVVTVFMDITCHYCHLLHQQLKEYND----LGITVRYLAF  123 (211)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHHHHHHHh----CCcEEEEEEC
Confidence            357899999999999999999999988544    2577776644

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.28  E-value=1.1e-06  Score=59.24  Aligned_cols=37  Identities=11%  Similarity=0.067  Sum_probs=31.7

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|+++|||+|....+.|.++.++++  ++.+..|+++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~   39 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--CceEEEEecc
Confidence            567999999999999999999988764  5888888765

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.26  E-value=5.5e-06  Score=63.77  Aligned_cols=51  Identities=14%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecC
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCN  150 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D  150 (245)
                      .+.+.+..++++|+.|+..+||+|....+.+.++.++|.+. +++++...+.
T Consensus        19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            34555667899999999999999999999999999988332 3888887765

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.22  E-value=7.1e-07  Score=62.72  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=30.1

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+++|+.|+++||++|....+.|.++.     .++.+.-|++|
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~   52 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYK-----DRFILQEVDIT   52 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTS-----SSSEEEEEETT
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhh-----hCCeEEEEECC
Confidence            457888899999999998888876543     23888888876

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.16  E-value=2.4e-06  Score=67.22  Aligned_cols=43  Identities=16%  Similarity=0.092  Sum_probs=38.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .++++|+.||..|||+|....+.+.++.+++.++ +.+..+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~-v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD-MYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT-EEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC-eEEEEecCC
Confidence            4789999999999999999999999999998874 888888775

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.12  E-value=1.5e-06  Score=58.22  Aligned_cols=36  Identities=6%  Similarity=0.074  Sum_probs=27.5

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.||++|||+|+...+.|.++.+++   |+.+..+.+|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~   39 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPS---KYTVEIVHLG   39 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTT---TEEEEEEETT
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhc---CCeEEEEEec
Confidence            56789999999999999998876554   4555555555

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.05  E-value=2.6e-06  Score=66.80  Aligned_cols=43  Identities=5%  Similarity=0.049  Sum_probs=36.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .++++|+.||..|||+|....+.+   .++.+++.+ +++++.+.++
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   58 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS   58 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence            467899999999999999999986   577777776 4888888876

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.01  E-value=1.3e-06  Score=68.42  Aligned_cols=40  Identities=18%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++++||.|+..|||+|....|.+.++.+++   ++.+.-+.++
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA---GTDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH---TSCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh---CCeEEEEecc
Confidence            689999999999999999999999999988   3666666654

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.01  E-value=1.1e-06  Score=73.67  Aligned_cols=38  Identities=11%  Similarity=0.059  Sum_probs=28.2

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHh
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY  137 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~  137 (245)
                      .+.+.+.-++..+++||++|||+|+...|.++++.+++
T Consensus       189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l  226 (291)
T 3kp9_A          189 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV  226 (291)
T ss_dssp             HHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS
T ss_pred             HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc
Confidence            34454443344578999999999999999998876554

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.99  E-value=2.8e-05  Score=66.76  Aligned_cols=93  Identities=8%  Similarity=0.053  Sum_probs=64.9

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCc
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT  188 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~  188 (245)
                      ++++|.|++.||+.|....+.+.++.++++++ +.++.|.+|        . ++..+.+ +.+++.          +   
T Consensus       136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~--------~-~~~~~~~-~~fgi~----------~---  191 (361)
T 3uem_A          136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSD--------H-TDNQRIL-EFFGLK----------K---  191 (361)
T ss_dssp             CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTT--------S-GGGHHHH-HHTTCC----------T---
T ss_pred             CcEEEEEEeCCchhHHHHHHHHHHHHHHccCc-eEEEEecCC--------h-HHHHHHH-HHcCCC----------c---
Confidence            47788999999999999999999999999877 888888765        1 1223444 455531          0   


Q ss_pred             chhhhhhhcccCCCCCCccccceeEEEECCCCcE-EEec-CCCCChHHHHHHHHHHhh
Q 026011          189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERY-PPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i-~~~~-~g~~~~~~l~~~l~~ll~  244 (245)
                                         ...|++.+++.++.. .+.. .+..+.+.|.+.++..++
T Consensus       192 -------------------~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~  230 (361)
T 3uem_A          192 -------------------EECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLE  230 (361)
T ss_dssp             -------------------TTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHT
T ss_pred             -------------------cCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhc
Confidence                               002888888764432 2322 266789999999988764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.94  E-value=6.1e-06  Score=55.04  Aligned_cols=32  Identities=9%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+++||++|....+.|.+       .|+++..|++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~   34 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMEN-------RGFDFEMINVD   34 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCCeEEEECC
Confidence            567999999999988777754       35777788877

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.89  E-value=2.1e-05  Score=60.62  Aligned_cols=43  Identities=5%  Similarity=-0.034  Sum_probs=35.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .++++|+.|+.-.||+|....+.+.++.+++.+. +.++.+.+.
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~~   62 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHVS   62 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEECS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc-eEEEEEecC
Confidence            4688999999999999999999999999998875 666665543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.88  E-value=2.6e-05  Score=63.60  Aligned_cols=43  Identities=12%  Similarity=0.157  Sum_probs=34.2

Q ss_pred             CCEEEEEEecCC--CCCChHHHHHHHHHHHHhhh-CC---cEEEEEecC
Q 026011          108 GKVLLIVNVASR--CGLTPSNYSELSHLYEKYKT-QG---FEILAFPCN  150 (245)
Q Consensus       108 gk~vll~F~~t~--C~~C~~~~~~l~~l~~~~~~-~g---~~vv~Vs~D  150 (245)
                      +++|+|.||+.|  |++|....+.+.++.+.+.+ +|   +.++.+..|
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d   73 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRE   73 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETT
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCC
Confidence            468899999999  99999999999999887532 22   777777665

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.74  E-value=4.6e-05  Score=49.67  Aligned_cols=32  Identities=9%  Similarity=0.183  Sum_probs=24.8

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+++||++|+...+.|.+       .|+.+..+.+|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~-------~~i~~~~~di~   34 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDR-------AGLAYNTVDIS   34 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCCcEEEECC
Confidence            466899999999988777764       35777777776

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=0.00079  Score=52.14  Aligned_cols=128  Identities=10%  Similarity=0.014  Sum_probs=75.1

Q ss_pred             ccCcccCeEEEcCCCCeeecC----CCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           84 TEKSLYDFTVKDIDGKDVPLS----KFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~----~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      -|...|.|---+. .+-+...    .-++|+++|+++.+||+.|.......   .++.+-+.+ ++.+++.+++      
T Consensus        28 yg~~~p~F~~gs~-~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~-nfV~w~~dv~------   99 (178)
T 2ec4_A           28 YGDCHPVFFIGSL-EAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLT------   99 (178)
T ss_dssp             HCSCCCCCCCSCH-HHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH-TEEEEEEECC------
T ss_pred             hCCCCCCeeeCCH-HHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc-CEEEEEEeCC------
Confidence            3556677731111 1223444    45789999999999999887665333   234444444 4888888776      


Q ss_pred             CCChHHHH---HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCC---cEEEecCCCC
Q 026011          157 PGSNPEIK---EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG---KVIERYPPTT  230 (245)
Q Consensus       157 ~~~~~~~~---~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G---~i~~~~~g~~  230 (245)
                        +.+...   .+..+..+             ..+....+.+          .+...|.+.||+++|   +++.+..|..
T Consensus       100 --~~e~~~~~~~~~~~~~g-------------~~~a~~~~~~----------~~~~~P~l~ii~~~~~~~~vl~~~~G~~  154 (178)
T 2ec4_A          100 --KDSNRARFLTMCNRHFG-------------SVVAQTIRTQ----------KTDQFPLFLIIMGKRSSNEVLNVIQGNT  154 (178)
T ss_dssp             --SHHHHHHHHHHHHHHTC-------------HHHHHHHHHS----------CSTTCSEEEEECCCSSCCCEEEEECSCC
T ss_pred             --CchhhhhhhhhhhhhhH-------------HHHHHHHhhc----------CCCCCCeEEEEEcCCCceEEEEEEeCCC
Confidence              343222   22211111             0001110000          034449999998764   7889999999


Q ss_pred             ChHHHHHHHHHHhh
Q 026011          231 SPFQIEKDIQKLVV  244 (245)
Q Consensus       231 ~~~~l~~~l~~ll~  244 (245)
                      +++++.+.|...++
T Consensus       155 ~~~~ll~~L~~~~e  168 (178)
T 2ec4_A          155 TVDELMMRLMAAME  168 (178)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999888877653

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.59  E-value=0.00053  Score=47.12  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |..|..+|||+|......|.       ++|+.+.-+.+|
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~-------~~gi~y~~idi~   37 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALT-------ANRIAYDEVDIE   37 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHH-------HTTCCCEEEETT
T ss_pred             EEEEcCCCCHhHHHHHHHHH-------hcCCceEEEEcC
Confidence            45688999999997665553       356777777776

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.54  E-value=1.1e-05  Score=63.66  Aligned_cols=53  Identities=19%  Similarity=0.217  Sum_probs=42.3

Q ss_pred             CCCee-ecCC-CCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecC
Q 026011           97 DGKDV-PLSK-FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus        97 ~G~~v-~l~~-~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+.+ .+.. ..++++||.||+.|||+|....|.+   .++.++++++ +.+.-+.++
T Consensus       100 ~g~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~-v~~~~~~v~  157 (197)
T 1un2_A          100 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG-VKMTKYHVN  157 (197)
T ss_dssp             BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT-CCEEEEECS
T ss_pred             CCCCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC-CEEEEeccC
Confidence            45433 2332 3578999999999999999999998   9999988764 889999887

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.53  E-value=0.00015  Score=56.47  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=36.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH-HHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL-SHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l-~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+++++|.||..+||+|....+.+ .++.+++.++ +++..+.++
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~-v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDI-VAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTT-CEEEEEECT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCc-eEEEEEecC
Confidence            467888899999999999999999 9998888754 888888766

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.51  E-value=6.5e-05  Score=56.44  Aligned_cols=39  Identities=15%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      .-.|+++|+.|...+||+|+...+.+.++    .  +++|+.+.+
T Consensus        11 ~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~--~v~v~~~~~   49 (147)
T 3gv1_A           11 RGNGKLKVAVFSDPDCPFCKRLEHEFEKM----T--DVTVYSFMM   49 (147)
T ss_dssp             ETTCCEEEEEEECTTCHHHHHHHHHHTTC----C--SEEEEEEEC
T ss_pred             cCCCCEEEEEEECCCChhHHHHHHHHhhc----C--ceEEEEEEc
Confidence            34578999999999999999998887653    2  377666644

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.50  E-value=5.2e-05  Score=59.46  Aligned_cols=43  Identities=9%  Similarity=0.081  Sum_probs=36.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .++++|+.|+.-+||+|....+.+   .++.+++.++ ++++.+.++
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~-v~~~~~~~~   65 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEG-TKMTKYHVE   65 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTT-CCEEEEECS
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCC-cEEEEEecc
Confidence            568999999999999999999987   6888888764 888888765

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.42  E-value=4.5e-05  Score=53.42  Aligned_cols=35  Identities=17%  Similarity=0.105  Sum_probs=23.9

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+++|||+|+...+.|.++..+++  +  +..+.+|
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~--~--~~~vdi~   48 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEG--L--LEFVDIT   48 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT--S--EEEEEGG
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCC--c--cEEEEcc
Confidence            566899999999988888876433322  1  4455655

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.42  E-value=0.00011  Score=53.97  Aligned_cols=30  Identities=3%  Similarity=0.101  Sum_probs=22.4

Q ss_pred             EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+++|||+|+...+.|.++       ++.+..|.+|
T Consensus        31 vf~~~~Cp~C~~~~~~L~~~-------~i~~~~vdid   60 (130)
T 2cq9_A           31 IFSKTSCSYCTMAKKLFHDM-------NVNYKVVELD   60 (130)
T ss_dssp             EEECSSCSHHHHHHHHHHHH-------TCCCEEEETT
T ss_pred             EEEcCCChHHHHHHHHHHHc-------CCCcEEEECc
Confidence            38999999999888877664       3455556666

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.33  E-value=0.00041  Score=55.87  Aligned_cols=49  Identities=16%  Similarity=0.122  Sum_probs=37.2

Q ss_pred             ecCCCCCCEEEEEEecCCCCCChHHHHHH-HHHHHHhhhC-CcEEEEEecC
Q 026011          102 PLSKFKGKVLLIVNVASRCGLTPSNYSEL-SHLYEKYKTQ-GFEILAFPCN  150 (245)
Q Consensus       102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l-~~l~~~~~~~-g~~vv~Vs~D  150 (245)
                      .+-+-.++++|+.|+.-.||+|....+.+ .++.++|.+. .++++...+.
T Consensus        33 ~~G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p   83 (226)
T 3f4s_A           33 LLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFP   83 (226)
T ss_dssp             EESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECC
T ss_pred             ccCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCC
Confidence            34445678999999999999999988864 7788888543 3788777654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.29  E-value=6.8e-05  Score=53.62  Aligned_cols=34  Identities=12%  Similarity=0.130  Sum_probs=24.8

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcE---EEEEecC
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFE---ILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~---vv~Vs~D  150 (245)
                      ..|+.|+++|||+|+...+.|.+       .+++   +..|.+|
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~-------~~~~~~~~~~vdi~   55 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNK-------FSFKRGAYEIVDIK   55 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTT-------SCBCTTSEEEEEGG
T ss_pred             CCEEEEEeCCChhHHHHHHHHHH-------cCCCcCceEEEEcc
Confidence            34566999999999977776643       4455   7777776

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.25  E-value=0.00012  Score=54.88  Aligned_cols=30  Identities=3%  Similarity=0.101  Sum_probs=22.1

Q ss_pred             EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       114 ~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+++|||+|+...+.|.++       ++.+..|.+|
T Consensus        53 vf~~~~Cp~C~~~k~~L~~~-------~i~~~~vdId   82 (146)
T 2ht9_A           53 IFSKTSCSYCTMAKKLFHDM-------NVNYKVVELD   82 (146)
T ss_dssp             EEECTTCHHHHHHHHHHHHH-------TCCCEEEEGG
T ss_pred             EEECCCChhHHHHHHHHHHc-------CCCeEEEECc
Confidence            39999999999888877654       3445556655

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=97.19  E-value=0.0027  Score=50.01  Aligned_cols=48  Identities=10%  Similarity=0.106  Sum_probs=36.3

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHH-HHHHHHhhhC-CcEEEEEecC
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSEL-SHLYEKYKTQ-GFEILAFPCN  150 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l-~~l~~~~~~~-g~~vv~Vs~D  150 (245)
                      +-.-.++++|+.|+.-.||+|....+.+ ..+.++|.+. .++++...+.
T Consensus        24 ~G~~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p   73 (202)
T 3gha_A           24 LGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM   73 (202)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred             ecCCCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecC
Confidence            3444678999999999999999888876 5666777543 3888877654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.06  E-value=0.0055  Score=48.94  Aligned_cols=92  Identities=7%  Similarity=-0.005  Sum_probs=63.5

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcc
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTA  189 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~  189 (245)
                      .+++.|...||+.|....+.+.++.++++++ +.++.|..|        . +.....+ +.+++.-              
T Consensus       133 ~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~--------~-~~~~~~l-~~fgl~~--------------  187 (227)
T 4f9z_D          133 IHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSG--------M-KENGKVI-SFFKLKE--------------  187 (227)
T ss_dssp             EEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETT--------S-GGGHHHH-HHTTCCG--------------
T ss_pred             eEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCc--------c-HhHHHHH-HHcCCCc--------------
Confidence            4455566789999999999999999999887 888888754        1 1223344 4545420              


Q ss_pred             hhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec-CCCCChHHHHHHHHHHhh
Q 026011          190 PVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY-PPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       190 ~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~-~g~~~~~~l~~~l~~ll~  244 (245)
                                        ...|.+.+++..+...+.+ .+..+.+.|.+.++.+++
T Consensus       188 ------------------~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          188 ------------------SQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             ------------------GGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             ------------------ccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence                              0128888888655444444 366789999999998874

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.00  E-value=0.0015  Score=45.30  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=24.9

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .-|+.|+.+|||+|......|.++       |+.+..|.+|
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~-------~i~y~~idI~   49 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRK-------GVEFQEYCID   49 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHH-------TCCCEEEECT
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHC-------CCCCEEEEcC
Confidence            334568999999999888777653       4566666666

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=96.88  E-value=0.0023  Score=44.58  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=17.9

Q ss_pred             EEEEecCCCCCChHHHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSHL  133 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l  133 (245)
                      ++.|+.+|||+|....+.|.++
T Consensus        24 v~ly~~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           24 VIMYGLSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCchHHHHHHHHHHc
Confidence            5558999999999888777653

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=96.83  E-value=0.003  Score=42.66  Aligned_cols=22  Identities=14%  Similarity=0.119  Sum_probs=17.3

Q ss_pred             EEEEecCCCCCChHHHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSHL  133 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l  133 (245)
                      ++.|+.+|||+|......|.++
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~   35 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE   35 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc
Confidence            4558899999999877777654

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=96.79  E-value=0.0052  Score=47.34  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHH-HHHHHHhhhC-CcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSEL-SHLYEKYKTQ-GFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l-~~l~~~~~~~-g~~vv~Vs~D  150 (245)
                      .++++|+.|+...||+|....+.+ .++.++|.+. +++++...+.
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p   55 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLA   55 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecC
Confidence            467888999999999999999998 5677788653 3787777654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.70  E-value=0.0032  Score=45.06  Aligned_cols=32  Identities=13%  Similarity=0.219  Sum_probs=22.9

Q ss_pred             EEEEecCCCCCChHH-HHHHHHHHHHhhhCC---cEEEEEecC
Q 026011          112 LIVNVASRCGLTPSN-YSELSHLYEKYKTQG---FEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~-~~~l~~l~~~~~~~g---~~vv~Vs~D  150 (245)
                      |+.|+.+|||+|+.. .+.|.       +.+   +.+..|.+|
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~-------~~~~~~i~~~~vdid   62 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFE-------KLKVPRSKVLVLQLN   62 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHT-------TSCCCGGGEEEEEGG
T ss_pred             EEEEEcCCCcCHHHHHHHHHH-------HcCCCCCCeEEEECc
Confidence            455999999999977 44443       334   777778777

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.60  E-value=0.0037  Score=43.64  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=23.8

Q ss_pred             EEEEEEec-----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          110 VLLIVNVA-----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~-----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+| |+.     +|||+|....+.|.++       |+.+..+.+|
T Consensus        18 ~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~   55 (105)
T 2yan_A           18 SVML-FMKGNKQEAKCGFSKQILEILNST-------GVEYETFDIL   55 (105)
T ss_dssp             SEEE-EESBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGG
T ss_pred             CEEE-EEecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECC
Confidence            4555 555     9999999887777654       4667777776

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.58  E-value=0.0049  Score=40.44  Aligned_cols=32  Identities=16%  Similarity=0.265  Sum_probs=23.4

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+.+||+.|....+.|.+.       |+.+..+.+|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~~i~   34 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPID   34 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECT
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------CCCcEEEECC
Confidence            4568899999999887777653       4666666666

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.56  E-value=0.0032  Score=44.51  Aligned_cols=32  Identities=9%  Similarity=0.236  Sum_probs=22.5

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|+.+|||+|....+.|.+       .|+.+-.+.+|
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~-------~~i~~~~~di~   52 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKR-------LGVQPLVVELD   52 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cCCCCeEEEee
Confidence            455899999999987777754       24554555555

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.41  E-value=0.01  Score=39.43  Aligned_cols=21  Identities=5%  Similarity=0.020  Sum_probs=16.4

Q ss_pred             EEEEecCCCCCChHHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSH  132 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~  132 (245)
                      ++.|+.+|||.|......|.+
T Consensus         6 v~ly~~~~Cp~C~~~~~~L~~   26 (89)
T 3msz_A            6 VKIYTRNGCPYCVWAKQWFEE   26 (89)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHH
Confidence            566889999999987666643

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=96.36  E-value=0.006  Score=41.13  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=23.8

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+.+||++|+...+.|.+       .|+.+..+.+|
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~-------~~i~~~~~di~   39 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLAR-------KGAEFNEIDAS   39 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEEST
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence            566889999999987766654       35666777776

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=95.59  E-value=0.026  Score=39.88  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=21.7

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +.|+.+|||+|......|.++       |+.+-.+.+|
T Consensus        20 ~vy~~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd   50 (114)
T 3h8q_A           20 VIFSKSYCPHSTRVKELFSSL-------GVECNVLELD   50 (114)
T ss_dssp             EEEECTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred             EEEEcCCCCcHHHHHHHHHHc-------CCCcEEEEec
Confidence            338899999999777776552       4555555555

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=95.46  E-value=0.065  Score=41.88  Aligned_cols=38  Identities=8%  Similarity=-0.033  Sum_probs=30.9

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      .|.+|+-.-||.|-...+.|.++.+++.+ +++|.....
T Consensus         4 ~I~~~~D~~CP~cy~~~~~l~~l~~~~~~-~v~v~~~p~   41 (208)
T 3kzq_A            4 KLYYVHDPMCSWCWGYKPTIEKLKQQLPG-VIQFEYVVG   41 (208)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHSCT-TSEEEEEEC
T ss_pred             EEEEEECCCCchhhhhhHHHHHHHHhCCC-CceEEEEec
Confidence            46667788999999999999999999864 477776664

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=95.08  E-value=0.048  Score=38.09  Aligned_cols=35  Identities=17%  Similarity=0.351  Sum_probs=24.4

Q ss_pred             CEEEEEEec----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          109 KVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       109 k~vll~F~~----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ..|+|+..+    +|||+|......|.+       .|+.+..|.++
T Consensus        15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~-------~~i~~~~vdi~   53 (109)
T 1wik_A           15 ASVMLFMKGNKQEAKCGFSKQILEILNS-------TGVEYETFDIL   53 (109)
T ss_dssp             SSEEEEESSTTTCCCSSTHHHHHHHHHH-------TCSCEEEEESS
T ss_pred             CCEEEEEecCCCCCCCchHHHHHHHHHH-------cCCCeEEEECC
Confidence            345554443    999999987776654       36778888877

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=94.95  E-value=0.032  Score=37.20  Aligned_cols=31  Identities=13%  Similarity=0.226  Sum_probs=22.5

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      ++.|+++||++|+...+.|.+.       |+.+..+.+
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~-------~i~~~~vdv   38 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK-------GVKYTDIDA   38 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH-------TCCEEEECS
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCcEEEEC
Confidence            5668999999999887777653       355555644

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=94.56  E-value=1.1  Score=36.61  Aligned_cols=38  Identities=13%  Similarity=0.235  Sum_probs=28.2

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +.|..|...+||.|...-..|.++..+   .++..+.+.+|
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~---~~vi~l~~~v~   81 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD   81 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhcc---CCeeeEEEEEE
Confidence            566678899999999888888887664   34555566654

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=94.38  E-value=0.049  Score=39.48  Aligned_cols=35  Identities=11%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             EEEEecCCCCCChHH-HHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSN-YSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~-~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|+.+|||+|... .+.|.++    ....+.+..|.+|
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~----~~~~i~~~~vdvd   74 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQEL----NVPKSKALVLELD   74 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTS----CCCGGGEEEEEGG
T ss_pred             EEEEECCCCCchHHHHHHHHHhc----CccCCCcEEEEcc
Confidence            456889999999977 4444332    1111556666665

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=94.37  E-value=0.12  Score=44.33  Aligned_cols=95  Identities=9%  Similarity=0.059  Sum_probs=62.9

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      ++.++.|+..+|+.|...+..|.++.++++++ .+.++.|..+.+        ....+++.+.+++..            
T Consensus       248 ~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~--------~~~l~~~~~~fgl~~------------  307 (367)
T 3us3_A          248 GIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDF--------PLLVPYWEKTFDIDL------------  307 (367)
T ss_dssp             TEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGC--------TTTHHHHHHHHTCCT------------
T ss_pred             CcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccc--------hhHHHHHHHhcCCCC------------
Confidence            45566688888888888999999999999985 388888876521        111222213344320            


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCc--EEEecCC---CCChHHHHHHHHHHhh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK--VIERYPP---TTSPFQIEKDIQKLVV  244 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~--i~~~~~g---~~~~~~l~~~l~~ll~  244 (245)
                                           ..|.+.+++....  ..+.+.+   ..+.+.|.+.++.+++
T Consensus       308 ---------------------~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~  348 (367)
T 3us3_A          308 ---------------------SAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLE  348 (367)
T ss_dssp             ---------------------TSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred             ---------------------CCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHc
Confidence                                 1188889986543  3333443   5688999999998874

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=94.23  E-value=0.31  Score=41.15  Aligned_cols=95  Identities=9%  Similarity=0.069  Sum_probs=60.9

Q ss_pred             CEEEEEEecCCCCCChHHHHHHHHHHHHhhh-CCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       109 k~vll~F~~t~C~~C~~~~~~l~~l~~~~~~-~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +..++.|...+|+.|....+.+.++.+++++ ..+.++.|..+        ....+.+|+.+.+++. .           
T Consensus       246 ~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~--------~~~~~~~~~~~~~gi~-~-----------  305 (350)
T 1sji_A          246 GIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPD--------DFPLLVAYWEKTFKID-L-----------  305 (350)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGG--------GCHHHHHHHHHHCCSC-T-----------
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECch--------hhHHHHHHHHhhcCCC-c-----------
Confidence            3344558888998899899999999999985 34788888654        1122222221444432 0           


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECC-CCcEEEe-cC---CCCChHHHHHHHHHHhh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIER-YP---PTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~-~G~i~~~-~~---g~~~~~~l~~~l~~ll~  244 (245)
                                           ..|.+.+++. +|+.... +.   +..+.+.|.+.++.+++
T Consensus       306 ---------------------~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          306 ---------------------FKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             ---------------------TSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred             ---------------------cCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence                                 0188888887 4433221 22   36688999999998874

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.19  E-value=0.19  Score=35.24  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=22.8

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|..++|+.|.. ...-++..+-+.+.|+.+..|.++
T Consensus        10 V~vy~~~~C~~C~~-~~~~~~ak~~L~~~gi~y~~vdI~   47 (111)
T 2ct6_A           10 IRVFIASSSGFVAI-KKKQQDVVRFLEANKIEFEEVDIT   47 (111)
T ss_dssp             EEEEECSSCSCHHH-HHHHHHHHHHHHHTTCCEEEEETT
T ss_pred             EEEEEcCCCCCccc-chhHHHHHHHHHHcCCCEEEEECC
Confidence            45577899999993 111112222333456788788776

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=94.11  E-value=0.23  Score=33.32  Aligned_cols=32  Identities=13%  Similarity=-0.007  Sum_probs=20.5

Q ss_pred             EEEEecCCCCCC------hHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLT------PSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C------~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|..++||.|      ......       +.+.|+.+.-+.++
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~-------L~~~~i~~~~~di~   41 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRI-------LDGKRIQYQLVDIS   41 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHH-------HHHTTCCCEEEETT
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHH-------HHHCCCceEEEECC
Confidence            445778999999      433332       23456777777776

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=93.56  E-value=0.64  Score=33.24  Aligned_cols=35  Identities=11%  Similarity=-0.052  Sum_probs=27.1

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF  147 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V  147 (245)
                      .+++||-|+.+||..|.   +.+.+..+.+ +. +.+..+
T Consensus        39 ~~v~VVGfF~~~~~~~~---~~F~~~A~~~-~d-~~F~~t   73 (124)
T 2l4c_A           39 TEVAVIGFFQDLEIPAV---PILHSMVQKF-PG-VSFGIS   73 (124)
T ss_dssp             SSEEEEEECSCTTSTHH---HHHHHHHHHC-TT-SEEEEE
T ss_pred             CCCEEEEEECCCCChhH---HHHHHHHHhC-CC-ceEEEE
Confidence            56899999999999884   6778888887 43 776555

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=91.21  E-value=0.17  Score=38.85  Aligned_cols=43  Identities=14%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHh-hhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKY-KTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~-~~~g~~vv~Vs~D  150 (245)
                      .++++|+.|.--.||+|....+.+.++.+++ .++ ++++.-.+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~-v~~v~r~~p   56 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDN-VTVRIRLQS   56 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTT-EEEEEEECC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCC-EEEEEEEcC
Confidence            4678899999999999999999998887776 443 888877654

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=90.78  E-value=0.1  Score=42.82  Aligned_cols=40  Identities=8%  Similarity=0.163  Sum_probs=31.1

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEe
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP  148 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs  148 (245)
                      -.|+.+|+.|+-..||+|+...+.+.+..++   -.+.++.+.
T Consensus       145 ~~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~---~~Vr~i~~P  184 (273)
T 3tdg_A          145 ANKDKILYIVSDPMCPHCQKELTKLRDHLKE---NTVRMVVVG  184 (273)
T ss_dssp             GGTTCEEEEEECTTCHHHHHHHHTHHHHHHH---CEEEEEECC
T ss_pred             CCCCeEEEEEECcCChhHHHHHHHHHHHhhC---CcEEEEEee
Confidence            3578999999999999999999999876653   236666554

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=90.62  E-value=0.53  Score=30.98  Aligned_cols=32  Identities=13%  Similarity=0.036  Sum_probs=21.8

Q ss_pred             EEEEecC----CCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVAS----RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t----~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|+.+    |||.|......|++       .|+.+-.+.++
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~   37 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIM   37 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHH-------cCCCEEEEEee
Confidence            3457789    99999977665544       45666666665

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=90.27  E-value=0.58  Score=36.57  Aligned_cols=49  Identities=14%  Similarity=-0.056  Sum_probs=36.5

Q ss_pred             eecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHH-HhhhC-CcEEEEEec
Q 026011          101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYE-KYKTQ-GFEILAFPC  149 (245)
Q Consensus       101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~-~~~~~-g~~vv~Vs~  149 (245)
                      ..+-+-.++++|+.|.--.||+|....+.+....+ +|.+. .++++...+
T Consensus         8 ~~~G~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A            8 HLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             ceecCCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence            34455568899999999999999998887766555 77333 388887765

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=89.65  E-value=0.28  Score=35.79  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=23.1

Q ss_pred             EEEEEEec----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          110 VLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .|+|+.++    +|||.|......|.+       .|+.+..|.++
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~-------~gv~y~~vdI~   73 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAA-------CGERFAYVDIL   73 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHT-------TCSCCEEEEGG
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHH-------cCCceEEEECC
Confidence            45555554    899999977666643       45777777776

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=89.65  E-value=0.17  Score=36.58  Aligned_cols=47  Identities=19%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      |+.|..+|||+|......|.+.+. + +-.++++-|..+       .+.+++++++
T Consensus        16 Vvvysk~~Cp~C~~ak~lL~~~~~-~-~v~~~~idid~~-------~d~~~~~~~l   62 (127)
T 3l4n_A           16 IIIFSKSTCSYSKGMKELLENEYQ-F-IPNYYIIELDKH-------GHGEELQEYI   62 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHEE-E-ESCCEEEEGGGS-------TTHHHHHHHH
T ss_pred             EEEEEcCCCccHHHHHHHHHHhcc-c-CCCcEEEEecCC-------CCHHHHHHHH
Confidence            455788999999987777765310 1 112445544433       2345666666

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=88.76  E-value=3.6  Score=32.77  Aligned_cols=33  Identities=12%  Similarity=-0.077  Sum_probs=24.9

Q ss_pred             eeEEEECCCCcEEEecCCCCChHH--HHHHHHHHhh
Q 026011          211 FEKFLVDKNGKVIERYPPTTSPFQ--IEKDIQKLVV  244 (245)
Q Consensus       211 P~~~liD~~G~i~~~~~g~~~~~~--l~~~l~~ll~  244 (245)
                      |.+.|+|.+|+. +.+.+..+.+.  |.+.++.+++
T Consensus       196 P~v~i~~~~~~k-y~~~~~~t~~~~~i~~F~~~~~~  230 (252)
T 2h8l_A          196 PVVAIRTAKGEK-FVMQEEFSRDGKALERFLQDYFD  230 (252)
T ss_dssp             CEEEEECTTSCE-EECCSCCCTTSHHHHHHHHHHHH
T ss_pred             CEEEEEeCcCcE-ecCCcccCcchHHHHHHHHHHHC
Confidence            888899876663 55666667777  9999988764

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=88.29  E-value=0.88  Score=32.79  Aligned_cols=52  Identities=15%  Similarity=0.107  Sum_probs=35.0

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF  175 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (245)
                      +..|+.++|+.|......|.+       .|+.+-.+.++    .++.+.+++.++. ++.+.++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~-------~gi~y~~~di~----~~~~~~~el~~~l-~~~~~~~   54 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEE-------HEIPFVERNIF----SEPLSIDEIKQIL-RMTEDGT   54 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCEEEEETT----TSCCCHHHHHHHH-HTCSSCG
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCceEEEEcc----CCCccHHHHHHHH-HHcCCCH
Confidence            445778999999977766653       45666666665    2245678888888 5555443

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=88.16  E-value=1.2  Score=35.40  Aligned_cols=36  Identities=22%  Similarity=0.045  Sum_probs=27.4

Q ss_pred             cccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       207 i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      |...|+++|++++|++.........-+.+...|+++
T Consensus       203 v~~~Pslvl~~~~g~~~~~~~~~~~r~~~~~~l~~~  238 (244)
T 3q6o_A          203 VTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRL  238 (244)
T ss_dssp             CCCSSEEEEEETTSCEEECCCSSSSHHHHHHHHHTC
T ss_pred             CCCCCeEEEEeCCCCeEeeccccccHHHHHHHHHhC
Confidence            666799999999999987776655566666666655

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=87.77  E-value=0.94  Score=32.11  Aligned_cols=52  Identities=10%  Similarity=0.066  Sum_probs=35.8

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF  175 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (245)
                      +..|..++|+.|+.....|.       ++|+.+-.+.++    .++.+.+++.++. ...+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~~di~----~~~~~~~el~~~l-~~~~~~~   53 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLN-------RHDVVFQEHNIM----TSPLSRDELLKIL-SYTENGT   53 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHH-------HTTCCEEEEETT----TSCCCHHHHHHHH-HHCSSTH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-------HcCCCeEEEecc----cCCCcHHHHHHHH-hhcCCCH
Confidence            34567899999997776664       356666666664    2356889999998 5555443

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=87.43  E-value=0.67  Score=32.34  Aligned_cols=36  Identities=14%  Similarity=0.302  Sum_probs=23.7

Q ss_pred             CCCEEEEEEec-----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVA-----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~-----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..+|+| |..     +|||+|......|.+       .|+.+..+.++
T Consensus        14 ~~~~Vvl-f~kg~~~~~~Cp~C~~ak~~L~~-------~gi~y~~~di~   54 (111)
T 3zyw_A           14 HAAPCML-FMKGTPQEPRCGFSKQMVEILHK-------HNIQFSSFDIF   54 (111)
T ss_dssp             TSSSEEE-EESBCSSSBSSHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred             hcCCEEE-EEecCCCCCcchhHHHHHHHHHH-------cCCCeEEEECc
Confidence            3445555 555     999999977766653       35666666665

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=87.36  E-value=1.2  Score=31.48  Aligned_cols=25  Identities=12%  Similarity=0.364  Sum_probs=16.3

Q ss_pred             CEEEEEEec----CCCCCChHHHHHHHHH
Q 026011          109 KVLLIVNVA----SRCGLTPSNYSELSHL  133 (245)
Q Consensus       109 k~vll~F~~----t~C~~C~~~~~~l~~l  133 (245)
                      ..|+|+--.    +|||+|......|.+.
T Consensus        16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~   44 (121)
T 3gx8_A           16 APVVLFMKGTPEFPKCGFSRATIGLLGNQ   44 (121)
T ss_dssp             CSEEEEESBCSSSBCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCCCCCCccHHHHHHHHHHc
Confidence            445553334    3999999877777653

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=86.26  E-value=1.2  Score=31.61  Aligned_cols=52  Identities=15%  Similarity=0.243  Sum_probs=35.9

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF  175 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (245)
                      +..|+.++|+.|+....-|.+       +|+.+-.+.+.    .++.+.+++.+++ ++.+.++
T Consensus         5 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~~di~----~~~~~~~eL~~~l-~~~g~~~   56 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELDD-------LAWDYDAIDIK----KNPPAASLIRNWL-ENSGLEL   56 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCEEEEETT----TSCCCHHHHHHHH-HHSCCCG
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCceEEEEec----cCchhHHHHHHHH-HHcCCCH
Confidence            345668999999987766643       45655555554    2356889999999 6766554

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=86.13  E-value=8  Score=28.13  Aligned_cols=77  Identities=8%  Similarity=-0.005  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCC
Q 026011          124 PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL  203 (245)
Q Consensus       124 ~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~  203 (245)
                      ....+.+.++.++|+++ +.++.|..+        . +.....+ +.+|+.-.                           
T Consensus        48 ~~~~~~~~~vAk~fkgk-i~Fv~vd~~--------~-~~~~~~l-~~fGl~~~---------------------------   89 (147)
T 3bj5_A           48 DGKLSNFKTAAESFKGK-ILFAFIDSD--------H-TDNQRIL-EFFGLKKE---------------------------   89 (147)
T ss_dssp             HHHHHHHHHHHHTTTTT-CEEEEECTT--------C-GGGHHHH-HHTTCCGG---------------------------
T ss_pred             HHHHHHHHHHHHHcCCc-eEEEEEecc--------h-HhHHHHH-HHcCCCcc---------------------------
Confidence            34568888899999876 777777542        1 1222233 44454210                           


Q ss_pred             CCccccceeEEEECC--CCcEEEecC-CCCChHHHHHHHHHHhh
Q 026011          204 GDLVKWNFEKFLVDK--NGKVIERYP-PTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       204 ~~~i~~~P~~~liD~--~G~i~~~~~-g~~~~~~l~~~l~~ll~  244 (245)
                           -.|.+.|++.  +++- +... +..+.+.|.+.++.+++
T Consensus        90 -----~~P~v~i~~~~~~~~K-y~~~~~~~t~~~i~~Fv~d~l~  127 (147)
T 3bj5_A           90 -----ECPAVRLITLEEEMTK-YKPESEELTAERITEFCHRFLE  127 (147)
T ss_dssp             -----GCSEEEEEECSSSCEE-ECCSCCCCCHHHHHHHHHHHHT
T ss_pred             -----cCCEEEEEeccccccc-CCCCcccCCHHHHHHHHHHHHc
Confidence                 0188888874  3432 4433 66788999999988764

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=85.17  E-value=3  Score=29.69  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=29.8

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhc
Q 026011          111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF  171 (245)
Q Consensus       111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~  171 (245)
                      ||..|..+.||.|.. ...=.+...-+..+|+.+--+.++        ..++.++++.++.
T Consensus         1 ~V~vYtt~~c~~c~~-kk~c~~aK~lL~~kgV~feEidI~--------~d~~~r~eM~~~~   52 (121)
T 1u6t_A            1 VIRVYIASSSGSTAI-KKKQQDVLGFLEANKIGFEEKDIA--------ANEENRKWMRENV   52 (121)
T ss_dssp             CEEEEECTTCSCHHH-HHHHHHHHHHHHHTTCCEEEEECT--------TCHHHHHHHHHHS
T ss_pred             CEEEEecCCCCCccc-hHHHHHHHHHHHHCCCceEEEECC--------CCHHHHHHHHHhc
Confidence            355677899999951 122222333345577887777776        3345555553553

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=84.66  E-value=0.6  Score=32.77  Aligned_cols=49  Identities=4%  Similarity=0.024  Sum_probs=32.1

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      +..|..++|+.|+.....|.+       +|+.+-.+.++    .++.+.++++++. ++.+
T Consensus         2 i~iY~~~~C~~C~kak~~L~~-------~gi~~~~~di~----~~~~~~~~l~~~~-~~~g   50 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDE-------HKVAYDFHDYK----AVGIDREHLRRWC-AEHG   50 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------TTCCEEEEEHH----HHCCCHHHHHHHH-HHHC
T ss_pred             EEEEECCCChHHHHHHHHHHH-------CCCceEEEeec----CCCCCHHHHHHHH-HhCC
Confidence            345678999999977766644       45665555553    1134668888888 5555

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=84.04  E-value=0.9  Score=31.46  Aligned_cols=36  Identities=8%  Similarity=0.139  Sum_probs=22.2

Q ss_pred             CCEEEEEEec----CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          108 GKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       108 gk~vll~F~~----t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ...|+|+--.    +|||+|......|.+       .|+.+-.+.++
T Consensus        17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~-------~gi~~~~~dI~   56 (109)
T 3ipz_A           17 SEKVVLFMKGTRDFPMCGFSNTVVQILKN-------LNVPFEDVNIL   56 (109)
T ss_dssp             SSSEEEEESBCSSSBSSHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred             cCCEEEEEecCCCCCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence            3455553333    399999977766654       35666666665

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=83.64  E-value=1.2  Score=31.53  Aligned_cols=52  Identities=10%  Similarity=0.003  Sum_probs=35.4

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCc
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF  175 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~  175 (245)
                      +..|+.++|+.|+.....|.+       +|+.+-.+.+.    .++.+.+++.+++ ++.+.++
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~-------~gi~~~~~di~----~~~~~~~eL~~~l-~~~g~~~   57 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLIE-------NNIEYTNRLIV----DDNPTVEELKAWI-PLSGLPV   57 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETT----TTCCCHHHHHHHH-HHHTSCG
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCceEEEecc----cCcCCHHHHHHHH-HHcCCCH
Confidence            345668999999987766643       45555555553    2356889999999 6666543

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=82.72  E-value=4.1  Score=32.39  Aligned_cols=92  Identities=7%  Similarity=0.044  Sum_probs=53.3

Q ss_pred             CCCEEEEEEec-CCC---CCC-hHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          107 KGKVLLIVNVA-SRC---GLT-PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       107 ~gk~vll~F~~-t~C---~~C-~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      .|+++++.|+. .++   .-+ ......+.++.++|+ + +.++.+..+        .-   ...+ +.+++.-      
T Consensus       131 ~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-k-i~F~~~d~~--------~~---~~~l-~~fgl~~------  190 (250)
T 3ec3_A          131 SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP-E-YTFAIADEE--------DY---ATEV-KDLGLSE------  190 (250)
T ss_dssp             CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT-T-SEEEEEETT--------TT---HHHH-HHTTCSS------
T ss_pred             ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc-c-eeEEEEcHH--------HH---HHHH-HHcCCCc------
Confidence            46766665553 333   222 335677788888888 4 777777543        11   2233 3444320      


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC-CCCChHHHHHHHHHHhh
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP-PTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~-g~~~~~~l~~~l~~ll~  244 (245)
                        .+.                       -|.++++|.+|+. +.+. +..+.+.|.+.++.+++
T Consensus       191 --~~~-----------------------~p~~~~~~~~~~k-y~~~~~~~t~~~i~~Fv~~~~~  228 (250)
T 3ec3_A          191 --SGG-----------------------DVNAAILDESGKK-FAMEPEEFDSDALREFVMAFKK  228 (250)
T ss_dssp             --CSC-----------------------SCEEEEECTTSCE-EECCCCSCCHHHHHHHHHHHHT
T ss_pred             --cCC-----------------------CcEEEEEcCCCce-ecCCcccCCHHHHHHHHHHHHC
Confidence              000                       0567788876654 4444 56788999999998864

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=81.41  E-value=0.83  Score=32.33  Aligned_cols=49  Identities=10%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      +..|..++|+.|+.....|.+       +|+.+-.+.++    .++.+.++++++. ++.+
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~-------~gi~y~~~di~----~~~~~~~~l~~~~-~~~g   55 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLED-------HGIDYTFHDYK----KEGLDAETLDRFL-KTVP   55 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCEEEEEHH----HHCCCHHHHHHHH-HHSC
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCcEEEEeee----CCCCCHHHHHHHH-HHcC
Confidence            345678999999987766654       34555455543    1134678888888 6666

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=80.79  E-value=1.6  Score=30.96  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA  173 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~  173 (245)
                      +..|+.++|+.|+....-|.       ++|+.+-.+.+.    .++.+.+++.+++ +..+.
T Consensus         7 i~iY~~p~C~~c~ka~~~L~-------~~gi~~~~~di~----~~~~~~~eL~~~l-~~~g~   56 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETLALVE-------QQGITPQVVLYL----ETPPSVDKLKELL-QQLGF   56 (121)
T ss_dssp             CEEECCTTCHHHHHHHHHHH-------TTTCCCEEECTT----TSCCCHHHHHHHH-HHTTC
T ss_pred             EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEeec----cCCCcHHHHHHHH-HhcCC
Confidence            34567899999997776653       356665556554    3356889999999 67665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d2f8aa1	184	c.47.1.10 (A:12-195) Glutathione peroxidase {Human	1e-47
d2b7ka1	169	c.47.1.10 (A:111-279) Thioredoxin-like protein Sco	2e-16
d1wp0a1	160	c.47.1.10 (A:138-297) Thioredoxin-like protein Sco	3e-16
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	4e-13
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	2e-09
d1zzoa1	134	c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri	2e-08
d1xzoa1	172	c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1	3e-08
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	5e-06
d2cvba1	187	c.47.1.10 (A:2-188) Probable thiol-disulfide isome	7e-06
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	1e-05
d1knga_	144	c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY	8e-05
d1st9a_	137	c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA	2e-04
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	5e-04
d2cx4a1	160	c.47.1.10 (A:4-163) Bacterioferritin comigratory p	0.001
d1o8xa_	144	c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula	0.003
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	0.003

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 1e-47
 Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 25/183 (13%)

Query: 86  KSLYDFTVKDID-GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI 144
           +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +
Sbjct: 1   QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 60

Query: 145 LAFPCNQFGGQEPGSNPEIKEFAC-----TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
           L FPCNQFG QE   N EI            F+  F +F+K +VNG    P++ FL+ + 
Sbjct: 61  LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 120

Query: 200 GGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 240
                D                    V WNFEKFLV  +G  + RY        IE DI+
Sbjct: 121 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 180

Query: 241 KLV 243
            L+
Sbjct: 181 ALL 183

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 2e-16
 Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 2/156 (1%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRC-GLTPSNYSELSHLYEKYKTQGFEILAFP 148
            F ++D+ G +       GK  +I    S C  + P    +L        ++    L   
Sbjct: 8   PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPL 67

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLV 207
                          +  +              +V          F            LV
Sbjct: 68  FITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLV 127

Query: 208 KWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
             +   +L+D  G+ ++              I + V
Sbjct: 128 DHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV 163

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 3e-16
 Identities = 17/156 (10%), Positives = 36/156 (23%), Gaps = 2/156 (1%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
            F++    G+      + G+ LLI    + C        E              +     
Sbjct: 2   PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTP 61

Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFL--KSSAGGFLGDLV 207
                       E        F  +              A  Y+              +V
Sbjct: 62  LFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIV 121

Query: 208 KWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
                 +L+  +G+ ++ +       +I   I   +
Sbjct: 122 DHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 157

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 62.6 bits (151), Expect = 4e-13
 Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 18/153 (11%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
             T+K  D +   +   K K  LI   AS C L  S   +     +  K     ++    
Sbjct: 5   LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVAS 64

Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKW 209
             F  ++        +F        +P    V  NG   A                 +  
Sbjct: 65  PGFLHEKK-----DGDFQKWYAGLNYPKLPVVTDNGGTIAQSLN-------------ISV 106

Query: 210 NFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
                L+ K+G V      + +  Q    I+  
Sbjct: 107 YPSWALIGKDGDVQRIVKGSINEAQALALIRDP 139

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 31/168 (18%), Positives = 45/168 (26%), Gaps = 24/168 (14%)

Query: 80  ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
             A+    L D   +D DGK   LS F+GK LL+   A+ C         L  L  K   
Sbjct: 28  TMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG 87

Query: 140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
             FE+                           +        +          +   K+  
Sbjct: 88  PNFEV--------------------VAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKV 127

Query: 200 GGFLGDLVKWNF--EKFLVDKNGKVIERY--PPTTSPFQIEKDIQKLV 243
              L  + +        LVD  G  I     P   +     K I+   
Sbjct: 128 FQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 175

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 22/154 (14%), Positives = 41/154 (26%), Gaps = 28/154 (18%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
            F+ K +DG D       GK  ++   A  C         +  +   +    F  +A   
Sbjct: 7   QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66

Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG-PNTAPVYQFLKSSAGGFLGDLVK 208
                QE  +   +K F       +  ++    V   P                      
Sbjct: 67  QVPAMQEFVNKYPVKTF-TQLADTDGSVWANFGVTQQPAY-------------------- 105

Query: 209 WNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
                  VD +G V       +   ++ + +  L
Sbjct: 106 -----AFVDPHGNVDVVRGRMSQD-ELTRRVTAL 133

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 7/158 (4%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
            FT ++ DGK+V L   KG+V L   + + C  T            + K +   I     
Sbjct: 13  PFTFQNQDGKNVSLESLKGEVWLADFIFTNCE-TICPPMTAHMTDLQKKLKAENIDVRII 71

Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAP---VYQFLKSSAGGFLGDL 206
           +     E     ++K+F    +   F  +D +     +      +  F          D 
Sbjct: 72  SFSVDPENDKPKQLKKF-AANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQ 130

Query: 207 VKWNFEKFLVDKNGKVIERYPPT--TSPFQIEKDIQKL 242
           V      +LV  +GKV++ Y     T    I  D++  
Sbjct: 131 VIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSA 168

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 18/155 (11%), Positives = 48/155 (30%), Gaps = 22/155 (14%)

Query: 90  DFTVKD--IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147
           + T +   ++G+         K  LI   +  C L      +++   +KY+ Q       
Sbjct: 9   ELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ------L 62

Query: 148 PCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLV 207
                       + +  +   T  + +      VD +       ++              
Sbjct: 63  NVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDH-ALTDAFE-------------N 108

Query: 208 KWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
           ++    ++ DK G++       +    +EK + ++
Sbjct: 109 EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Length = 187

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 15/77 (19%), Positives = 27/77 (35%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
           D  + D  G    LS+F   +L +V + + C     +  EL  L E+Y+ +   +     
Sbjct: 14  DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINAN 73

Query: 150 NQFGGQEPGSNPEIKEF 166
           +     E          
Sbjct: 74  DYEKYPEDAPEKMAAFA 90

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 18/156 (11%), Positives = 37/156 (23%), Gaps = 30/156 (19%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
            FT   + G     +  +GK  ++      C    +    LS +        F  +A   
Sbjct: 6   QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRA 65

Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG-PNTAPVYQFLKSSAGGFLGDLVK 208
           +    Q      +          A+  I+ + +V   P                      
Sbjct: 66  DVGAMQSF--VSKYNLNFTNLNDADGVIWARYNVPWQPAF-------------------- 103

Query: 209 WNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQKL 242
                     +G    +       S  ++   +  L
Sbjct: 104 -----VFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 39.4 bits (90), Expect = 8e-05
 Identities = 25/164 (15%), Positives = 44/164 (26%), Gaps = 26/164 (15%)

Query: 80  ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139
           A       L      ++    +  + FKGKV L+   AS C         L+ L +  + 
Sbjct: 3   APQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF 62

Query: 140 QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA 199
           Q   I                   + F              VD NG  +           
Sbjct: 63  QLVGINYKDAAD----------NARRF--LGRYGNPFGRVGVDANGRASIEWGV------ 104

Query: 200 GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 243
                       E F+V + G ++ +     +P  +   +   +
Sbjct: 105 --------YGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM 140

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 24/153 (15%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
           +F ++D +GK + LS  KGK +                         + T          
Sbjct: 7   NFVLEDTNGKRIELSDLKGKGV---------------------FLNFWGTWCEPCKKEFP 45

Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKW 209
                 +   +  ++  A    +++  + + +   G N   V    +     +    V  
Sbjct: 46  YMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAY---DVSP 102

Query: 210 NFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL 242
               FL++  GKV++    T +   I   +  +
Sbjct: 103 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI 135

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 86  KSLYDFTVKDID--GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY 137
           K  + ++   +     D+ L    GK +     AS C  + +   +L   Y+ +
Sbjct: 4   KKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAH 57

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 12/137 (8%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149
           DFT+ + D + V L +   +    V +      +P             +   F       
Sbjct: 10  DFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCT---------KELCTFRDKMAQL 60

Query: 150 NQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKW 209
            +   +    + +               F+ +         +Y        G      + 
Sbjct: 61  EKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRA 120

Query: 210 NFEKFLVDKNGKVIERY 226
               F+V  +G V  ++
Sbjct: 121 V---FIVKPDGTVAYKW 134

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 86  KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY 137
           K L           +V +    GK++     AS C        +L   Y+K+
Sbjct: 4   KYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKF 55

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 19/144 (13%), Positives = 37/144 (25%), Gaps = 19/144 (13%)

Query: 90  DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLT-PSNYSELSHLYEKYKTQGFEILAFP 148
           +F +   D  DV L+ F  K  ++    S       ++  + +    K       +L   
Sbjct: 24  NFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCIS 81

Query: 149 CNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK 208
            +    Q      E  E A T                  T P+      +          
Sbjct: 82  ADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAV--------- 132

Query: 209 WNFEKFLVDKNGKVI--ERYPPTT 230
                 ++D+   V+  +      
Sbjct: 133 -----IVLDEQNNVLHSQLVEEIK 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.97
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.96
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.96
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.95
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.95
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.95
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.94
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.94
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.94
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.94
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.94
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.94
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.94
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.93
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.93
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.93
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.93
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.93
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.92
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.92
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.91
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.91
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.91
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.91
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.9
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.9
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.9
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.9
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.9
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.89
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.89
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.89
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.88
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.88
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.83
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.69
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.64
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.58
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.57
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.56
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.56
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.55
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.53
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.53
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.51
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.5
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.5
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.49
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.49
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.48
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.47
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.47
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.45
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.45
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.4
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.39
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.38
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.35
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.3
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.27
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.26
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.21
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.21
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.15
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.14
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.14
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.07
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.04
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.96
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.88
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.86
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.6
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.29
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.29
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.74
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.7
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.57
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.49
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.34
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.03
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	95.57
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.5
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	95.07
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	94.87
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	94.71
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	93.24
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	93.12
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	92.36
d1pn0a2	201	Phenol hydroxylase, C-terminal domain {Soil-living	90.65
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	90.45
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	89.41
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	88.29
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	88.04
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	87.98

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=206.77  Aligned_cols=158  Identities=39%  Similarity=0.696  Sum_probs=143.7

Q ss_pred             cccCeEEEcCC-CCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHH
Q 026011           87 SLYDFTVKDID-GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE  165 (245)
Q Consensus        87 ~~pdf~l~~~~-G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~  165 (245)
                      .+.||+++|++ |+.++|++|+||++||++||+||++|..+++.|++++++|+++|++|+++.+|+|+.+++++.+++++
T Consensus         2 siydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~   81 (184)
T d2f8aa1           2 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILN   81 (184)
T ss_dssp             CGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHH
T ss_pred             ceeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhhh
Confidence            57899999986 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-----hcCCCcceeeccCCCCCCcchhhhhhhcccCC-------------------CCCCccccceeEEEECCCCc
Q 026011          166 FACT-----RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG-------------------FLGDLVKWNFEKFLVDKNGK  221 (245)
Q Consensus       166 ~~~~-----~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~~~P~~~liD~~G~  221 (245)
                      +++.     .++..||+....+++|....++|.+++...++                   ..+..|.|+.+.||||++|+
T Consensus        82 f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~  161 (184)
T d2f8aa1          82 SLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV  161 (184)
T ss_dssp             HHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred             hhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCC
Confidence            9832     57889999999999999999999998765432                   22345899999999999999


Q ss_pred             EEEecCCCCChHHHHHHHHHHhh
Q 026011          222 VIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       222 i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ++.+|.+..++++++++|+++|+
T Consensus       162 vv~rf~~~~~p~~i~~~Ie~lL~  184 (184)
T d2f8aa1         162 PLRRYSRRFQTIDIEPDIEALLS  184 (184)
T ss_dssp             EEEEECTTSCGGGGHHHHHHHHC
T ss_pred             EEEEECCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999985

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=4.7e-30  Score=202.02  Aligned_cols=147  Identities=20%  Similarity=0.295  Sum_probs=122.6

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      ..+.+|+++|||+|+|++|+.++|++++||+|||+||++|||+|+.++|.|++++++|+++ +.+++|+.++......++
T Consensus         4 p~l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~-v~~v~i~snd~~~~~~~~   82 (187)
T d2cvba1           4 PELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDA   82 (187)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGS
T ss_pred             CCCCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc-ceeeeeeccccccccccc
Confidence            4567999999999999999999999999999999999999999999999999999999875 999999876554555567


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC--------CC
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--------TS  231 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~--------~~  231 (245)
                      .+.+++++ ++++++||++.|.+   ..+.+.|+             +..+|++||||++|+|+++..-.        .+
T Consensus        83 ~e~~~~~~-~~~~~~~p~l~D~~---~~~~~~~~-------------v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~  145 (187)
T d2cvba1          83 PEKMAAFA-EEHGIFFPYLLDET---QEVAKAYR-------------ALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQ  145 (187)
T ss_dssp             HHHHHHHH-HHHTCCSCEEECSS---SHHHHHTT-------------CCEESEEEEECTTCBEEEEECSSSCTTCGGGCC
T ss_pred             hHHHHHHH-HHhCCcceeeechh---hhhccccc-------------ccceeeEEEEcCCCeEEEEeeecCCCCCCCCCC
Confidence            89999999 88899999996533   34555555             56679999999999998864211        13


Q ss_pred             hHHHHHHHHHHhh
Q 026011          232 PFQIEKDIQKLVV  244 (245)
Q Consensus       232 ~~~l~~~l~~ll~  244 (245)
                      ..+|.++|+.+|+
T Consensus       146 ~~~L~~Ai~~ll~  158 (187)
T d2cvba1         146 SHDLEAAIEALLR  158 (187)
T ss_dssp             CCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            3469999999885

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=2.4e-29  Score=188.38  Aligned_cols=135  Identities=23%  Similarity=0.410  Sum_probs=117.8

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI  163 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~  163 (245)
                      .|+++|+|+++|.+|+++++++++||++||+||++||++|..+++.++++++++.++++.+++|++|       ++.+++
T Consensus         1 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~-------~~~~~~   73 (137)
T d1st9a_           1 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVG-------ESKIAV   73 (137)
T ss_dssp             CCEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEES-------CCHHHH
T ss_pred             CcCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeeccccccccccccccccccccccccc-------chhhhH
Confidence            3889999999999999999999999999999999999999999999999999999999999999987       378999


Q ss_pred             HHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       164 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      ++|+ ++++.+||++.|.+   ..+.+.|+             +..+|++||||++|+|++++.|..+.+++++.|+.+
T Consensus        74 ~~~~-~~~~~~~~~~~d~~---~~~~~~~~-------------v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_          74 HNFM-KSYGVNFPVVLDTD---RQVLDAYD-------------VSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             HHHH-HHTTCCSCEEEETT---SHHHHHTT-------------CCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHH-HHcCCCcccccccc---chhhhhhh-------------ccccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence            9999 88999999996533   22334443             455699999999999999999998888887766543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=2.1e-28  Score=182.51  Aligned_cols=132  Identities=13%  Similarity=0.229  Sum_probs=112.2

Q ss_pred             cCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHH
Q 026011           85 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        85 g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      |+..++|++++++|+++++++++||++||+||++|||+|+.++|.|++++++++  ++.+++|+.+       ++.+.++
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~-------~~~~~~~   71 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATR-------ADVGAMQ   71 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECS-------SCHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc--cccccccccc-------cchhhhh
Confidence            678899999999999999999999999999999999999999999999998764  5999999987       3788999


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec--CCCCChHHHHHHHHHH
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY--PPTTSPFQIEKDIQKL  242 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~--~g~~~~~~l~~~l~~l  242 (245)
                      +|+ ++++++||++.|.+   ..+.+.|+             +.++|++||||++|+|++.+  .|..+.+++.+.|+.|
T Consensus        72 ~~~-~~~~~~~p~~~d~~---~~~~~~~~-------------v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          72 SFV-SKYNLNFTNLNDAD---GVIWARYN-------------VPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             HHH-HHHTCCSEEEECTT---SHHHHHTT-------------CCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred             hhh-hhhccccceeeCch---HHHHHHcC-------------CCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence            999 88999999995532   33444444             56679999999999997654  5667888899888764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.95  E-value=7.6e-28  Score=187.62  Aligned_cols=142  Identities=22%  Similarity=0.222  Sum_probs=115.0

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHH
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      ..+.++|||+++|++|+.++|++++||++||+||++||++|..+++.++++++++.+.++.|+.|++|      .++.++
T Consensus        31 ~~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d------~~~~~~  104 (176)
T d1jfua_          31 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID------TRDPEK  104 (176)
T ss_dssp             CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECC------CSCTTH
T ss_pred             CCCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccccccccccccc------ccchhh
Confidence            45668999999999999999999999999999999999999999999999999999999999999987      346788


Q ss_pred             HHHHHHHhcCCCcc-eeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC--ChHHHHHHH
Q 026011          163 IKEFACTRFKAEFP-IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPFQIEKDI  239 (245)
Q Consensus       163 ~~~~~~~~~~~~~p-~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--~~~~l~~~l  239 (245)
                      +++|+ ++++..++ ++.|.  . ....+.++.+         +.+.+.|++||||++|+|++++.|..  +.+++.+.|
T Consensus       105 ~~~~~-~~~~~~~~~~~~d~--~-~~~~~~~~~~---------~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l  171 (176)
T d1jfua_         105 PKTFL-KEANLTRLGYFNDQ--K-AKVFQDLKAI---------GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLI  171 (176)
T ss_dssp             HHHHH-HHTTCCTTCCEECT--T-CHHHHHHHTT---------TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHH
T ss_pred             hhhhH-hhhCCcceeeeecc--h-hHHHHHHhhh---------ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHH
Confidence            99999 78888765 55332  2 2122222211         12555699999999999999988754  557888888


Q ss_pred             HHHh
Q 026011          240 QKLV  243 (245)
Q Consensus       240 ~~ll  243 (245)
                      +.++
T Consensus       172 ~al~  175 (176)
T d1jfua_         172 RAAT  175 (176)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8876

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=7.8e-28  Score=181.37  Aligned_cols=140  Identities=17%  Similarity=0.248  Sum_probs=118.3

Q ss_pred             cccCcccCeEEEc--CCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           83 ATEKSLYDFTVKD--IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        83 ~~g~~~pdf~l~~--~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ++|+++|+|++.+  .+|+.++++.++||++||+||++||++|..++|.|++++++++++ +++|+|+.+...  ...+.
T Consensus         2 k~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~-~~~i~v~~~~~~--~~~~~   78 (143)
T d2b5xa1           2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSE--DDLDP   78 (143)
T ss_dssp             CTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCST--TTSSH
T ss_pred             CCCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc-ccceeEEeeccc--cccch
Confidence            5799999999777  589999999999999999999999999999999999999999874 999999987432  23356


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      +.+++|+ ++++++||++.|.+   ..+.+.|+             +..+|++||||++|+|++++.|..+.+++++.|+
T Consensus        79 ~~~~~~~-~~~~~~~p~~~D~~---~~~~~~~~-------------v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~  141 (143)
T d2b5xa1          79 GKIKETA-AEHDITQPIFVDSD---HALTDAFE-------------NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN  141 (143)
T ss_dssp             HHHHHHH-HHTTCCSCEEECSS---CHHHHHTC-------------CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHH
T ss_pred             hhhhhHH-HhhccCccccccCc---cchHHHcC-------------CCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            7789999 89999999996533   23344443             5566999999999999999999999999999998


Q ss_pred             HH
Q 026011          241 KL  242 (245)
Q Consensus       241 ~l  242 (245)
                      +|
T Consensus       142 ~l  143 (143)
T d2b5xa1         142 RV  143 (143)
T ss_dssp             HH
T ss_pred             hC
Confidence            75

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=4e-28  Score=186.19  Aligned_cols=149  Identities=15%  Similarity=0.224  Sum_probs=122.5

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCC--CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKF--KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~--~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      +++|+++|+|+|+|.+|+.++|+++  +||++||+|| ++|||+|..+++.++++++++++.++.+++|+.|        
T Consensus         2 i~vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------   73 (160)
T d2cx4a1           2 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD--------   73 (160)
T ss_dssp             CCTTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESS--------
T ss_pred             CcCCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccccccccccccc--------
Confidence            4689999999999999999999997  8999999888 9999999999999999999999999999999987        


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC-----CChH
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-----TSPF  233 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~-----~~~~  233 (245)
                      +++.+++|. ++++++|+++.|.+   ..+.+.|+.+.....+   ....+.|++||||++|+|++++.+.     .+.+
T Consensus        74 ~~~~~~~~~-~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~---~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~  146 (160)
T d2cx4a1          74 SPWCLKKFK-DENRLAFNLLSDYN---REVIKLYNVYHEDLKG---LKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYD  146 (160)
T ss_dssp             CHHHHHHHH-HHHTCSSEEEECTT---SHHHHHTTCEEEEETT---EEEEECCEEEEECTTSBEEEEEECSSTTCCCCHH
T ss_pred             chhhhhhhc-ccceeeEEEeecCC---cchHHHcCcccccccc---ccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHH
Confidence            888999998 88999999997644   3456667654433222   1234458999999999999886432     2566


Q ss_pred             HHHHHHHHHhhC
Q 026011          234 QIEKDIQKLVVA  245 (245)
Q Consensus       234 ~l~~~l~~ll~~  245 (245)
                      ++.+.+++++.+
T Consensus       147 eil~~l~~l~~e  158 (160)
T d2cx4a1         147 EVVREANKIAGE  158 (160)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHccc
Confidence            788888887653

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=7.7e-28  Score=183.39  Aligned_cols=144  Identities=19%  Similarity=0.292  Sum_probs=114.4

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCCC-EEEE-EEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~gk-~vll-~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +++|+++|+|+++|.+|++++|++++|| ++|| +||++|||+|..+++.|+++++++.++|++|++|+.|        +
T Consensus         2 l~vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d--------~   73 (153)
T d1xvwa1           2 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG--------P   73 (153)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC--------C
T ss_pred             CCCcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccch--------h
Confidence            5689999999999999999999999996 4555 4559999999999999999999999999999999987        8


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----ChHHH
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----SPFQI  235 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----~~~~l  235 (245)
                      .+.+++|+ ++++++|+++.+.+.++ .+.+.|+.+....+      + ..|++||||++|+|++.+.+..    +..++
T Consensus        74 ~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~ygv~~~~~g------~-~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~  144 (153)
T d1xvwa1          74 PPTHKIWA-TQSGFTFPLLSDFWPHG-AVSQAYGVFNEQAG------I-ANRGTFVVDRSGIIRFAEMKQPGEVRDQRLW  144 (153)
T ss_dssp             HHHHHHHH-HHHTCCSCEEECTTTTT-HHHHHTTCEETTTT------E-ECSEEEEECTTSBEEEEEECCTTCCCCHHHH
T ss_pred             hhHHHHHh-hhhccceeEEecccccc-hhHHHhhhhhhccC------c-eeeeEEEECCCCEEEEEEEeCCCcccCHHHH
Confidence            99999999 88999999997655443 35666665433221      1 2378999999999988764322    34456


Q ss_pred             HHHHHHH
Q 026011          236 EKDIQKL  242 (245)
Q Consensus       236 ~~~l~~l  242 (245)
                      .+.|+.|
T Consensus       145 ~~~L~aL  151 (153)
T d1xvwa1         145 TDALAAL  151 (153)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            6666654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.94  E-value=7.8e-27  Score=180.03  Aligned_cols=141  Identities=14%  Similarity=0.219  Sum_probs=113.8

Q ss_pred             cccCcccCeEEEcC----CCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCC
Q 026011           83 ATEKSLYDFTVKDI----DGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP  157 (245)
Q Consensus        83 ~~g~~~pdf~l~~~----~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~  157 (245)
                      .+|+++|+|++++.    ++++++|++++||++||+|| ..|||+|..+++.|++.+++|+++|++||+||.|       
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D-------   74 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTD-------   74 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESS-------
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccc-------
Confidence            37999999999974    34579999999999999999 5599999999999999999999999999999998       


Q ss_pred             CChHHHHHHHHHh----cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---
Q 026011          158 GSNPEIKEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---  230 (245)
Q Consensus       158 ~~~~~~~~~~~~~----~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---  230 (245)
                       +.+.+++|. ++    ++++||++.|.+   ..+.+.|+.+....+       -..|++||||++|+|++.+.+..   
T Consensus        75 -~~~~~~~~~-~~~~~~~~~~fpll~D~~---~~v~~~ygv~~~~~~-------~~~r~tfvID~~G~I~~~~i~~~~~~  142 (166)
T d1we0a1          75 -THFVHKAWH-ENSPAVGSIEYIMIGDPS---QTISRQFDVLNEETG-------LADRGTFIIDPDGVIQAIEINADGIG  142 (166)
T ss_dssp             -CHHHHHHHH-HSCHHHHTCCSEEEECTT---CHHHHHTTCEETTTT-------EECEEEEEECTTSBEEEEEEECTTSC
T ss_pred             -cHHHHHHHh-hhhhhhcccccccccCcc---cHHHHHhCCCccccC-------cccceEEEECCCCcEEEEEEcCCCCC
Confidence             888888887 44    578999996644   557788876543222       12389999999999998765433   


Q ss_pred             -ChHHHHHHHHHH
Q 026011          231 -SPFQIEKDIQKL  242 (245)
Q Consensus       231 -~~~~l~~~l~~l  242 (245)
                       +.+++.+.|+.+
T Consensus       143 r~~~eil~~lkal  155 (166)
T d1we0a1         143 RDASTLINKVKAA  155 (166)
T ss_dssp             CCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc
Confidence             456777766655

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.4e-26  Score=179.26  Aligned_cols=141  Identities=12%  Similarity=0.196  Sum_probs=115.7

Q ss_pred             ccccCcccCeEEEcCCC---------------CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEE
Q 026011           82 AATEKSLYDFTVKDIDG---------------KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEIL  145 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G---------------~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv  145 (245)
                      +++|+++|+|++++.+|               +.++|++++||++||+|| ++|||+|..+++.|++.+++|+++|++++
T Consensus         3 l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv   82 (169)
T d2bmxa1           3 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQIL   82 (169)
T ss_dssp             CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEE
T ss_pred             CCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCccee
Confidence            57999999999999887               578999999999999998 99999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCChHHHHHHHHHhcC----CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCc
Q 026011          146 AFPCNQFGGQEPGSNPEIKEFACTRFK----AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK  221 (245)
Q Consensus       146 ~Vs~D~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~  221 (245)
                      +||.|        +.+..++|. +.++    ++||++.|.+   ..+.+.|+++...        -...|++||||++|+
T Consensus        83 ~is~d--------~~~~~~~~~-~~~~~~~~~~f~ll~D~~---~~v~~~ygv~~~~--------~~~~r~~fvID~~G~  142 (169)
T d2bmxa1          83 GVSID--------SEFAHFQWR-AQHNDLKTLPFPMLSDIK---RELSQAAGVLNAD--------GVADRVTFIVDPNNE  142 (169)
T ss_dssp             EEESS--------CHHHHHHHH-HHCTTGGGCCSCEEECTT---SHHHHHHTCBCTT--------SSBCEEEEEECTTSB
T ss_pred             ecccc--------chhhhhhhc-ccccccccceEEEEeccH---HHHHHHcCCCccC--------CccceeEEEEcCCCE
Confidence            99998        788888887 5554    8999997644   4577778765321        123499999999999


Q ss_pred             EEEecCCCC----ChHHHHHHHHHH
Q 026011          222 VIERYPPTT----SPFQIEKDIQKL  242 (245)
Q Consensus       222 i~~~~~g~~----~~~~l~~~l~~l  242 (245)
                      |++.+.+..    +.+++.+.|+.|
T Consensus       143 I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         143 IQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            988764332    456777777655

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=7.6e-27  Score=173.87  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=106.4

Q ss_pred             ccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011           88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus        88 ~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      ..||+++|++|+++++++++||++||+||++||++|+.++|.|+++++++++  +.+++|+.+       ++.+..++|+
T Consensus         5 ~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~v~v~~~-------d~~~~~~~~~   75 (134)
T d1zzoa1           5 QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE--VTFVGVAGL-------DQVPAMQEFV   75 (134)
T ss_dssp             GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECS-------SCHHHHHHHH
T ss_pred             CcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc--ccccccccc-------ccchhHHHHH
Confidence            4689999999999999999999999999999999999999999999999865  677888765       4788889998


Q ss_pred             HHhcCC-CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          168 CTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       168 ~~~~~~-~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                       ++++. .||++.|.+   ..+.+.|+             +.++|++||||++|+|++. .|..+.+++.+.|++|
T Consensus        76 -~~~~~~~~~~l~D~~---~~~~~~~~-------------v~~~P~~~iiD~~G~i~~~-~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          76 -NKYPVKTFTQLADTD---GSVWANFG-------------VTQQPAYAFVDPHGNVDVV-RGRMSQDELTRRVTAL  133 (134)
T ss_dssp             -HHTTCTTSEEEECTT---CHHHHHTT-------------CCSSSEEEEECTTCCEEEE-ESCCCHHHHHHHHHHH
T ss_pred             -HhcCCcceeEEeecc---chHHHhcC-------------CCccCeEEEECCCCeEEEE-ECCCCHHHHHHHHHhh
Confidence             67676 488885432   23444443             5667999999999999764 5778899999999876

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.94  E-value=5.5e-27  Score=181.23  Aligned_cols=142  Identities=18%  Similarity=0.252  Sum_probs=113.9

Q ss_pred             ccccCcccCeE----EEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           82 AATEKSLYDFT----VKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        82 ~~~g~~~pdf~----l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      +++|+++|||+    ++|.+|++++|++++||++||+|| ++||++|..+++.|++.+++|+++|++|++||.|      
T Consensus         3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d------   76 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCD------   76 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCC------
Confidence            46999999999    567899999999999999999998 9999999999999999999999999999999988      


Q ss_pred             CCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          157 PGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                        +.+.+.+|. ++.       .++|+++.|.+   ..+.+.|+++....+       ...|++||||++|+|++.+.+.
T Consensus        77 --~~~~~~~~~-~~~~~~~~~~~~~~~~l~d~~---~~~~~~y~v~~~~~g-------~~~r~tfvID~~G~Ir~~~~~~  143 (167)
T d1e2ya_          77 --SEYSHLQWT-SVDRKKGGLGPMAIPMLADKT---KAIARAYGVLDEDSG-------VAYRGVFIIDPNGKLRQIIIND  143 (167)
T ss_dssp             --CHHHHHHHH-HSCGGGTCCCCCSSCEEECTT---CHHHHHHTCEETTTT-------EECEEEEEECTTSBEEEEEEEC
T ss_pred             --cHHhHHHHH-hhHHHhcccccccccccccch---hHHHHHcCCCcccCC-------CceeEEEEECCCCEEEEEEEcC
Confidence              888888887 332       46788886543   446667765433222       1238999999999998876433


Q ss_pred             C----ChHHHHHHHHHH
Q 026011          230 T----SPFQIEKDIQKL  242 (245)
Q Consensus       230 ~----~~~~l~~~l~~l  242 (245)
                      .    +.+++.+.|+.+
T Consensus       144 ~~~~~~~~evL~~l~al  160 (167)
T d1e2ya_         144 MPIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             TTBCCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            2    456777777665

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.94  E-value=2.7e-27  Score=178.22  Aligned_cols=138  Identities=16%  Similarity=0.107  Sum_probs=112.8

Q ss_pred             cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC  168 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~  168 (245)
                      +..+|++.+|++++|.+++||++||+||++||++|+.+++.|++++++++..++.+++|+.+......  ......++..
T Consensus         4 ~~~~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~   81 (143)
T d2fy6a1           4 TLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK--KDGDFQKWYA   81 (143)
T ss_dssp             HHHTCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCC--CTTHHHHHHT
T ss_pred             CcceeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeeccccc--chhhhhhhhh
Confidence            44578999999999999999999999999999999999999999999999999999999987543322  3445666664


Q ss_pred             HhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ..+...||++.|.+   ..+...|+             +.++|+++|||++|+|++++.|..+.+++.+.|+++.+
T Consensus        82 ~~~~~~~~~~~D~~---~~~~~~~~-------------v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~a  141 (143)
T d2fy6a1          82 GLNYPKLPVVTDNG---GTIAQSLN-------------ISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNA  141 (143)
T ss_dssp             TSCCTTSCEEECTT---CHHHHHTT-------------CCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTS
T ss_pred             hcCCcccccccccc---hHHHHHcC-------------CCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHhc
Confidence            56667799995532   33444444             56679999999999999999999999999998887654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.93  E-value=2e-26  Score=181.67  Aligned_cols=143  Identities=17%  Similarity=0.189  Sum_probs=118.1

Q ss_pred             ccccCcccCeEE----EcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           82 AATEKSLYDFTV----KDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        82 ~~~g~~~pdf~l----~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      +..|.++|||++    .|.+|++++|++++||++||+|| ++||++|..+++.|++++++|+++|++|++||.|      
T Consensus         3 ae~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~D------   76 (194)
T d1uula_           3 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD------   76 (194)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             cccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecC------
Confidence            457889999994    56788999999999999999999 9999999999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          157 PGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                        +.+.+++|. +++       +++||++.|.+   ..+.+.|+++....+       ...|++||||++|+|++.+...
T Consensus        77 --s~~s~~~~~-~~~~~~~~~~~l~fpllsD~~---~~v~~~ygv~~~~~~-------~~~R~tfvID~~G~I~~~~~~~  143 (194)
T d1uula_          77 --SEYSHLAWT-SIERKRGGLGQMNIPILADKT---KCIMKSYGVLKEEDG-------VAYRGLFIIDPKQNLRQITVND  143 (194)
T ss_dssp             --CHHHHHHHH-HSCGGGTCCCSCSSCEEECTT---CHHHHHHTCEETTTT-------EECEEEEEECTTSBEEEEEEEC
T ss_pred             --chhhhhhhh-hhhhhhccccCCCcceeeCCc---chHHHHcCCeeccCC-------ceEEEEEEECCCCeEEEEEEec
Confidence              889999998 443       57999997644   557888887654332       1238999999999999886433


Q ss_pred             C----ChHHHHHHHHHHh
Q 026011          230 T----SPFQIEKDIQKLV  243 (245)
Q Consensus       230 ~----~~~~l~~~l~~ll  243 (245)
                      .    +.+++.+.|+.+.
T Consensus       144 ~~~~r~~~E~Lr~l~alQ  161 (194)
T d1uula_         144 LPVGRDVDEALRLVKAFQ  161 (194)
T ss_dssp             TTBCCCHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHhh
Confidence            2    6677877777664

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.1e-25  Score=172.21  Aligned_cols=138  Identities=15%  Similarity=0.173  Sum_probs=111.8

Q ss_pred             CcccCeEEEc---CCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChH
Q 026011           86 KSLYDFTVKD---IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        86 ~~~pdf~l~~---~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      +.||+|++++   .+|++++|+|++||+|||+|| +.|||+|..+++.|+++++++.+.|++|++||.|        +.+
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d--------~~~   72 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD--------SHF   72 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS--------CHH
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCc--------CHH
Confidence            4699999875   456789999999999999999 9999999999999999999999999999999998        899


Q ss_pred             HHHHHHHHh-------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----
Q 026011          162 EIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----  230 (245)
Q Consensus       162 ~~~~~~~~~-------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----  230 (245)
                      .+++|+ ++       ++++||++.|.+   ..+.+.|+......+      + ..|++||||++|+|++.+.+..    
T Consensus        73 ~~~~~~-~~~~~~~~~~~~~f~llsD~~---~~~~~~ygv~~~~~g------~-~~R~tfvID~~G~I~~~~i~~~~~~~  141 (158)
T d1zyea1          73 SHLAWI-NTPRKNGGLGHMNIALLSDLT---KQISRDYGVLLEGPG------L-ALRGLFIIDPNGVIKHLSVNDLPVGR  141 (158)
T ss_dssp             HHHHHH-TSCGGGTCCCSCSSEEEECTT---SHHHHHTTCEETTTT------E-ECEEEEEECTTSBEEEEEEECTTCCC
T ss_pred             HHHHHH-hhhHhhccccccccccccccc---cHHHHHHHhccccCC------c-cccEEEEECCCCEEEEEEEeCCCCCC
Confidence            999998 44       478999997655   446777775443222      1 2389999999999998764333    


Q ss_pred             ChHHHHHHHHHH
Q 026011          231 SPFQIEKDIQKL  242 (245)
Q Consensus       231 ~~~~l~~~l~~l  242 (245)
                      +.+++.+.|+.+
T Consensus       142 ~~~EiL~~lkal  153 (158)
T d1zyea1         142 SVEETLRLVKAF  153 (158)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh
Confidence            456777777655

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=2.5e-25  Score=172.58  Aligned_cols=152  Identities=24%  Similarity=0.397  Sum_probs=116.5

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCCh
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ++.++|+|+|+|.+|+.+++++++||++||+||++||+ .|+.+++.|.++++++++.|  +.+|+||+|    ++.|++
T Consensus         7 ~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD----p~~Dtp   82 (172)
T d1xzoa1           7 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD----PENDKP   82 (172)
T ss_dssp             CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC----TTTCCH
T ss_pred             CCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc----cccchH
Confidence            67789999999999999999999999999999999998 89999999999999997644  899999998    667899


Q ss_pred             HHHHHHHHHhcCCCcceeeccCCCCCCcchhhhh----hhcccC-CCCCCccccceeEEEECCCCcEEEecCCCC--ChH
Q 026011          161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQF----LKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPF  233 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~----~~~~~~-~~~~~~i~~~P~~~liD~~G~i~~~~~g~~--~~~  233 (245)
                      +.+++|+ +.+++.++.+....  +.....+.+.    +....+ ....+.+.|++.+||||++|+|+..|.|..  +.+
T Consensus        83 ~~l~~y~-~~~~~~~~~w~~lt--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~  159 (172)
T d1xzoa1          83 KQLKKFA-ANYPLSFDNWDFLT--GYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYD  159 (172)
T ss_dssp             HHHHHHH-TTSCCCGGGEEEEB--CSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHH
T ss_pred             HHHHHHH-HHhccccccceeec--cchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHH
Confidence            9999999 88888876442111  1111111111    111111 112345778899999999999998886653  567


Q ss_pred             HHHHHHHHH
Q 026011          234 QIEKDIQKL  242 (245)
Q Consensus       234 ~l~~~l~~l  242 (245)
                      ++.++|+.+
T Consensus       160 ~l~~dik~~  168 (172)
T d1xzoa1         160 DIISDVKSA  168 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888876

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.93  E-value=8.9e-26  Score=174.73  Aligned_cols=141  Identities=18%  Similarity=0.233  Sum_probs=114.3

Q ss_pred             cccCcccCeEEEcCCC-----CeeecCCCCCC-EEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCC
Q 026011           83 ATEKSLYDFTVKDIDG-----KDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ  155 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G-----~~v~l~~~~gk-~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~  155 (245)
                      .+|+++|||++++.+|     +.++|++++|| ++||+|| ++|||.|..+++.|++.+++++++|++|++||.|     
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d-----   76 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID-----   76 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESS-----
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEeccccc-----
Confidence            4899999999999988     46999999996 8999999 9999999999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHhc-------CCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          156 EPGSNPEIKEFACTRF-------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~-------~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                         +.+.+++|. +++       +++||++.|.+   ..+.+.|+.+... +       ...|++||||++|+|++.+.+
T Consensus        77 ---~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~---~~v~~~ygv~~~~-~-------~~~r~tfvID~~G~I~~~~~~  141 (170)
T d1zofa1          77 ---SEQVHFAWK-NTPVEKGGIGQVSFPMVADIT---KSISRDYDVLFEE-A-------IALRGAFLIDKNMKVRHAVIN  141 (170)
T ss_dssp             ---CHHHHHHHH-TSCGGGTCCCCCSSCEEECTT---SHHHHHTTCEETT-T-------EECEEEEEEETTTEEEEEEEE
T ss_pred             ---chhhHHHHH-hhhhhcccccCcccccccccc---cHHHHHcCCCccc-c-------ceeEEEEEEcCCCeEEEEEEe
Confidence               888999997 554       67899997654   4577778764431 1       133999999999999876533


Q ss_pred             CC----ChHHHHHHHHHHh
Q 026011          229 TT----SPFQIEKDIQKLV  243 (245)
Q Consensus       229 ~~----~~~~l~~~l~~ll  243 (245)
                      ..    +.+++.+.|+.|.
T Consensus       142 ~~~~~~~~~eiL~~l~aLq  160 (170)
T d1zofa1         142 DLPLGRNADEMLRMVDALL  160 (170)
T ss_dssp             SSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            22    4556666666653

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=7.3e-26  Score=172.92  Aligned_cols=132  Identities=11%  Similarity=0.194  Sum_probs=107.7

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCC--CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKF--KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~--~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      ..+.+|+++|+|+|+|.+|+.++|+++  +|++||++|| ++|||+|..+++.|++.+++|++. ..+++||.|      
T Consensus         3 ~~L~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~-~~~~~is~d------   75 (156)
T d2a4va1           3 NELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY-AAVFGLSAD------   75 (156)
T ss_dssp             TCCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-CEEEEEESC------
T ss_pred             ccCCCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc-cceeeeccc------
Confidence            457799999999999999999999998  5668888777 899999999999999999999765 779999987      


Q ss_pred             CCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCCh
Q 026011          157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSP  232 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~  232 (245)
                        +.+.+++|+ ++++++||++.|.+   ..+.+.|+......++        .+..++|+.||++++++.+..+.
T Consensus        76 --~~~~~~~f~-~~~~l~f~~L~D~~---~~v~~~ygv~~~~~~~--------~~r~~~i~~dg~i~~~~~~~~~~  137 (156)
T d2a4va1          76 --SVTSQKKFQ-SKQNLPYHLLSDPK---REFIGLLGAKKTPLSG--------SIRSHFIFVDGKLKFKRVKISPE  137 (156)
T ss_dssp             --CHHHHHHHH-HHHTCSSEEEECTT---CHHHHHHTCBSSSSSC--------BCCEEEEEETTEEEEEEESCCHH
T ss_pred             --hhhhHHhhh-cccCccceeccchH---HHHHHHcCCCccccCC--------eeEEEEEEECCeEEEEEEEeCCC
Confidence              899999999 89999999997644   4567778765433222        24455555899999998776533

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.92  E-value=4.5e-26  Score=171.78  Aligned_cols=132  Identities=19%  Similarity=0.269  Sum_probs=104.1

Q ss_pred             cccCeEEEcCCC--------CeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           87 SLYDFTVKDIDG--------KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        87 ~~pdf~l~~~~G--------~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ++|+|++++.+|        ..+++++++||++||+||++||++|+.++|.+.++++++   ++++++|+.+       .
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~---~~~~~~i~~~-------~   71 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK---RFQLVGINYK-------D   71 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT---TSEEEEEEES-------C
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc---CceeEEEEee-------e
Confidence            466666666555        678899999999999999999999999999999886654   5889999887       3


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHH
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKD  238 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~  238 (245)
                      .....+++. ++++..++.+. .|.+ ..+.+.|+             +..+|+++|||++|+|++++.|..+.+++++.
T Consensus        72 ~~~~~~~~~-~~~~~~~~~~~-~d~~-~~~~~~~~-------------v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~  135 (144)
T d1knga_          72 AADNARRFL-GRYGNPFGRVG-VDAN-GRASIEWG-------------VYGVPETFVVGREGTIVYKLVGPITPDNLRSV  135 (144)
T ss_dssp             CHHHHHHHH-HHHCCCCSEEE-EETT-SHHHHHTT-------------CCSSCEEEEECTTSBEEEEEESCCCHHHHHHT
T ss_pred             chHHHHHHH-HHcCCcccccc-cccc-chhhhhcC-------------ccccceEEEEcCCCeEEEEEeCCCCHHHHHHH
Confidence            677788888 77788777432 2322 22444443             56669999999999999999999999998888


Q ss_pred             HHHHhh
Q 026011          239 IQKLVV  244 (245)
Q Consensus       239 l~~ll~  244 (245)
                      |+++|+
T Consensus       136 i~~~l~  141 (144)
T d1knga_         136 LLPQME  141 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-25  Score=175.49  Aligned_cols=144  Identities=21%  Similarity=0.244  Sum_probs=119.0

Q ss_pred             cccccCcccCeEEE---cCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCC
Q 026011           81 TAATEKSLYDFTVK---DIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE  156 (245)
Q Consensus        81 ~~~~g~~~pdf~l~---~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~  156 (245)
                      .+++|+++|+|+++   |.+|+.++|++++||++||+|| +.||+.|..++..|++++++|++.|++|++||.|      
T Consensus         4 ~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D------   77 (197)
T d1qmva_           4 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVD------   77 (197)
T ss_dssp             TBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             CCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecC------
Confidence            45799999999886   5577889999999999999998 9999999999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHHh-------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC
Q 026011          157 PGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT  229 (245)
Q Consensus       157 ~~~~~~~~~~~~~~-------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~  229 (245)
                        +.+.+++|. ++       .+++||++.|.+   ..+.+.|+++....+      + ..|.+||||++|+|++.+...
T Consensus        78 --~~~~~~~~~-~~~~~~~~~~~~~fpll~D~~---~~va~~ygv~~~~~g------~-~~R~tfiID~~g~Ir~~~~~~  144 (197)
T d1qmva_          78 --SQFTHLAWI-NTPRKEGGLGPLNIPLLADVT---RRLSEDYGVLKTDEG------I-AYRGLFIIDGKGVLRQITVND  144 (197)
T ss_dssp             --CHHHHHHHH-TSCGGGTCCCSCSSCEEECTT---CHHHHHTTCEETTTT------E-ECEEEEEECTTSBEEEEEEEC
T ss_pred             --CHHHHHhhh-cchhhhcCcCCCccceEeccc---hHHHHHhCCCcccCC------e-eeEEEEEECCCCcEEEEEecC
Confidence              889999998 44       368999997644   558888887654322      1 238999999999999865333


Q ss_pred             C----ChHHHHHHHHHHh
Q 026011          230 T----SPFQIEKDIQKLV  243 (245)
Q Consensus       230 ~----~~~~l~~~l~~ll  243 (245)
                      .    +.+++.+.|+.+.
T Consensus       145 ~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_         145 LPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             TTBCCCHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHhhc
Confidence            2    6677877777764

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=1.3e-24  Score=169.97  Aligned_cols=142  Identities=11%  Similarity=0.211  Sum_probs=116.2

Q ss_pred             cccCcccCeEEEc-CCC--CeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKD-IDG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        83 ~~g~~~pdf~l~~-~~G--~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+|+++|+|++++ .+|  ++++|++++||++||+|| ..|||.|..+++.|++.+++|++.|++|++||.|        
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~D--------   73 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTD--------   73 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEecccc--------
Confidence            3799999999987 455  468899999999999999 8999999999999999999999999999999998        


Q ss_pred             ChHHHHHHHHHhcC----CCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC----
Q 026011          159 SNPEIKEFACTRFK----AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----  230 (245)
Q Consensus       159 ~~~~~~~~~~~~~~----~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~----  230 (245)
                      +.+.+++|+ ++++    ++||+++|.+   ..+.+.|+.+....+-       ..|.+||||++|+|++.+....    
T Consensus        74 s~~sh~~f~-~~~~~~~~~~fpllsD~~---~~v~~~yGv~~~~~g~-------~~r~tfiID~~G~Ir~~~v~~~~~~r  142 (186)
T d1n8ja_          74 THFTHKAWH-SSSETIAKIKYAMIGDPT---GALTRNFDNMREDEGL-------ADRATFVVDPQGIIQAIEVTAEGIGR  142 (186)
T ss_dssp             CHHHHHHHH-HHCTTGGGCCSEEEECTT---SHHHHHTTCEETTTTE-------ECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred             CHHHHHHHh-ccccccccccccccccHH---HHHHHHhCCCcccCCc-------ceeeEEEECchheEEEEeecCCCccc
Confidence            899999998 6654    8999997654   5577888865443221       1289999999999988763332    


Q ss_pred             ChHHHHHHHHHHh
Q 026011          231 SPFQIEKDIQKLV  243 (245)
Q Consensus       231 ~~~~l~~~l~~ll  243 (245)
                      +.+++.+.|+.|.
T Consensus       143 ~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         143 DASDLLRKIKAAQ  155 (186)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6677777777764

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-24  Score=173.15  Aligned_cols=149  Identities=13%  Similarity=0.129  Sum_probs=119.7

Q ss_pred             ccccCcccCeEEEcCCCCeeecCCCCC-CEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~~v~l~~~~g-k~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      +.+|+++|||++++.+|+ ++|++++| |++||+|| +.|||+|..++..|++.+++|+++|++|++||+|        +
T Consensus         1 L~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~D--------s   71 (220)
T d1prxa_           1 LLLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID--------S   71 (220)
T ss_dssp             CCTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------C
T ss_pred             CCCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccc--------c
Confidence            358999999999999995 99999987 78999888 8999999999999999999999999999999998        8


Q ss_pred             hHHHHHHHHH---------hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 026011          160 NPEIKEFACT---------RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT  230 (245)
Q Consensus       160 ~~~~~~~~~~---------~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~  230 (245)
                      .+.+.+|...         ..+++||+++|.+   ..+.+.|+.+....+...+. ....+.+||||++|+|++......
T Consensus        72 ~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~---~~va~~ygv~~~~~~~~~~~-~~~~RatFIID~~g~Ir~~~~~~~  147 (220)
T d1prxa_          72 VEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN---RELAILLGMLDPAEKDEKGM-PVTARVVFVFGPDKKLKLSILYPA  147 (220)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT---CHHHHHTTSSCSCTTCSSSC-CTTCCEEEEECTTSBEEEEEECCT
T ss_pred             ccchhhhhhhhhhccccccccCcccccccCcc---cHHHHHhCCccccccccccc-eeeeEEEEEEcCccceeEEEEecC
Confidence            8888888732         1468999997755   56888999876544322221 113489999999999998753332


Q ss_pred             ----ChHHHHHHHHHHh
Q 026011          231 ----SPFQIEKDIQKLV  243 (245)
Q Consensus       231 ----~~~~l~~~l~~ll  243 (245)
                          +.+++.+.|+.|.
T Consensus       148 ~~gR~~dEiLr~l~alq  164 (220)
T d1prxa_         148 TTGRNFDEILRVVISLQ  164 (220)
T ss_dssp             TBCCCHHHHHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHh
Confidence                6778888877764

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1e-24  Score=162.61  Aligned_cols=123  Identities=20%  Similarity=0.221  Sum_probs=96.4

Q ss_pred             EcCCCCeeecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcC
Q 026011           94 KDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK  172 (245)
Q Consensus        94 ~~~~G~~v~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~  172 (245)
                      .|.+|+.++++++ +||+|||+||++||++|+.++|.|+++++    +++.+++++.+       ++......+. .+++
T Consensus         5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~~~vi~i~~~-------~~~~~~~~~~-~~~~   72 (136)
T d1z5ye1           5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QGIRVVGMNYK-------DDRQKAISWL-KELG   72 (136)
T ss_dssp             SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TTCCEEEEEES-------CCHHHHHHHH-HHHC
T ss_pred             ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hhhhhcccccc-------cchhhhHHHH-HHcC
Confidence            3556999999888 89999999999999999999999988754    56999999987       3667777777 5556


Q ss_pred             CCcc-eeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          173 AEFP-IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       173 ~~~p-~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                      ..++ ++.|  .++ .+...|+             +..+|++||||++|+|++++.|..+.+++++.|+++|+
T Consensus        73 ~~~~~~~~d--~~~-~~~~~~~-------------v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          73 NPYALSLFD--GDG-MLGLDLG-------------VYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             CCCSEEEEE--SSC-HHHHHHT-------------CCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             Cccceeecc--cch-hHHHhcc-------------cCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence            5554 4433  232 2334443             55669999999999999999999888888887777764

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-24  Score=167.29  Aligned_cols=132  Identities=16%  Similarity=0.130  Sum_probs=106.4

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+++|+++|+|+|+|.+|++++|++++||++||.|| +.|||+|..+++.|++++.+++  ++++++||.|        +
T Consensus        17 ~~~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d--------~   86 (164)
T d1qxha_          17 IPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISAD--------L   86 (164)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESS--------C
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcC--------C
Confidence            357999999999999999999999999999999888 7899999999999999998774  5999999988        8


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                      ++.+++|. +++++.++++.+.|.+ ..+.+.|+......+ ..|  + ..|++||||++|+|++.+..
T Consensus        87 ~~~~~~~~-~~~~~~~~~~~~~d~~-~~~~~~ygv~~~~~~-~~g--~-~~ra~fvID~~G~I~y~~~~  149 (164)
T d1qxha_          87 PFAQSRFC-GAEGLNNVITLSTFRN-AEFLQAYGVAIADGP-LKG--L-AARAVVVIDENDNVIFSQLV  149 (164)
T ss_dssp             HHHHTTCC-SSTTCTTEEEEECTTC-HHHHHHTTCBBCSST-TTT--S-BCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHH-HHhCCCcceeeccccc-hhhHHhcCeEeecCc-ccC--c-ccCEEEEEcCCCEEEEEEEc
Confidence            89999998 7889999988665544 335566664332211 111  1 23889999999999987543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.90  E-value=4.8e-24  Score=172.17  Aligned_cols=143  Identities=15%  Similarity=0.214  Sum_probs=113.6

Q ss_pred             cccCcccCeEEEcCCCCeeecCCC---CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKF---KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~---~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      .+|+++|+|++.+.+| ++.+.++   +||++||+|| ++|||+|..+++.|++++++|+++|++||+||+|        
T Consensus         2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~D--------   72 (237)
T d2zcta1           2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVD--------   72 (237)
T ss_dssp             CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCC--------
Confidence            3899999999999999 5777765   8999999888 9999999999999999999999999999999998        


Q ss_pred             ChHHHHHHHHH-----hcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---
Q 026011          159 SNPEIKEFACT-----RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---  230 (245)
Q Consensus       159 ~~~~~~~~~~~-----~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---  230 (245)
                      +.+.+++|...     ..+++||++.|.+   ..+.+.|+++....+      ....|++||||++|+|++.+....   
T Consensus        73 s~~sh~~w~~~~~~~~~~~l~fpllsD~~---~~vak~yGv~~~~~~------~~~~RatFIIDpdG~Ir~~~~~~~~~g  143 (237)
T d2zcta1          73 SVFSHIKWKEWIERHIGVRIPFPIIADPQ---GTVARRLGLLHAESA------THTVRGVFIVDARGVIRTMLYYPMELG  143 (237)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCSCEEECGG---GHHHHHTTCC----C------CTTCCEEEEECTTSBEEEEEECCTTBC
T ss_pred             cHHHHHHHhhhhhhhcccccccccccCcc---hHHHHHcCCcccccc------ccceeeeEEECCCCEEEEEEEeCCCCC
Confidence            77878777631     3678999997755   557778886543222      122399999999999987754332   


Q ss_pred             -ChHHHHHHHHHHh
Q 026011          231 -SPFQIEKDIQKLV  243 (245)
Q Consensus       231 -~~~~l~~~l~~ll  243 (245)
                       +.+++.+.|+.|.
T Consensus       144 R~~dEiLr~l~aLQ  157 (237)
T d2zcta1         144 RLVDEILRIVKALK  157 (237)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence             6778888887764

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.90  E-value=9.8e-24  Score=162.11  Aligned_cols=128  Identities=13%  Similarity=0.109  Sum_probs=101.7

Q ss_pred             ccccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ..+++|+++|+|+|++.+|++++|++++||++||.|| +.|||+|..+++.|++.+++++  |+.+++|+.|        
T Consensus        14 ~~l~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d--------   83 (163)
T d1psqa_          14 KQLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMD--------   83 (163)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESS--------
T ss_pred             CCCCCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEec--------
Confidence            3567999999999999999999999999999999888 7899999999999999888885  5899999988        


Q ss_pred             ChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec
Q 026011          159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY  226 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~  226 (245)
                      +++.+++|. ++++..++.+.+.+.+ ..+.+.|+.+....+.       ..|++||||++|+|++.+
T Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ygv~~~~~~~-------~~Ra~fvID~~G~I~y~~  142 (163)
T d1psqa_          84 LPFAQKRWC-GAEGLDNAIMLSDYFD-HSFGRDYALLINEWHL-------LARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             CHHHHHHHH-HHHTCTTSEEEECTTT-CHHHHHHTCBCTTTCS-------BCCEEEEECTTCBEEEEE
T ss_pred             cHHHHHHHH-HHcCCcceeeeccccc-hhHHHhheeecccccc-------eeEEEEEECCCCEEEEEE
Confidence            888999998 6767666555332322 3455667654332221       126799999999999875

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.90  E-value=8.1e-25  Score=164.84  Aligned_cols=120  Identities=17%  Similarity=0.242  Sum_probs=92.9

Q ss_pred             cccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhh-hCCcEEEEEecCCCCCCCCCChH
Q 026011           83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNP  161 (245)
Q Consensus        83 ~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~-~~g~~vv~Vs~D~~~~~~~~~~~  161 (245)
                      .+++.+|+++....+|.+++|++++||+|||+||++||++|+.++|.|++++++|. +.++++|+|+.|       ++.+
T Consensus         3 ~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d-------~~~~   75 (144)
T d1o73a_           3 GLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWD-------ENES   75 (144)
T ss_dssp             GGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSHH
T ss_pred             CcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecc-------hhHH
Confidence            36789999999999999999999999999999999999999999999999999995 457999999998       3677


Q ss_pred             HHHHHHHHhcCCCcceeeccCCCC--CCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEec
Q 026011          162 EIKEFACTRFKAEFPIFDKVDVNG--PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERY  226 (245)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~d~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~  226 (245)
                      ...++. ++.+. +.+.  .+..+  ..+.+.|+             |.++|++||||+| |+|+...
T Consensus        76 ~~~~~~-~~~~~-~~~~--~~~~~~~~~l~~~y~-------------v~~~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_          76 DFHDYY-GKMPW-LALP--FDQRSTVSELGKTFG-------------VESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHHH-TTCSS-EECC--TTCHHHHHHHHHHHT-------------CCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHHH-Hhccc-ccee--eeccchHHHHHHHcC-------------CCcCCEEEEEECCCCEEEeec
Confidence            888887 44332 1111  11110  01222232             6677999999998 8998764

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=1.4e-23  Score=161.65  Aligned_cols=129  Identities=13%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+++|+++|+|+|+|.+|++++|++++||++||+|| +.|||.|..+++.|++   ++.+.|++|++|+.|        +
T Consensus        16 ~p~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~---~~~~~g~~vv~Is~d--------~   84 (166)
T d1xvqa_          16 LPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKD--------L   84 (166)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHH---HHHHTTCEEEEEESS--------C
T ss_pred             CCCCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhh---hcccccccccccccc--------h
Confidence            357999999999999999999999999999999999 6799999999887765   455678999999988        7


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                      ...+++|. +++++.++.+.+ + ....+.+.|+.+..... ..+.   ..|++||||++|+|++.+.
T Consensus        85 ~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~~-~~g~---~~ra~fvID~~G~I~y~~~  145 (166)
T d1xvqa_          85 PFAQKRFC-GAEGTENVMPAS-A-FRDSFGEDYGVTIADGP-MAGL---LARAIVVIGADGNVAYTEL  145 (166)
T ss_dssp             HHHHTTCC-------CEEEEE-C-TTSSHHHHTTCBBCSST-TTTS---BCSEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHH-HHhCCccccccc-c-hhHHHHHHhCeeeccCc-ccCc---eeeEEEEEeCCCEEEEEEE
Confidence            88888988 778888877642 2 22334555654432211 1111   1378999999999997653

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.90  E-value=7.7e-24  Score=169.02  Aligned_cols=150  Identities=15%  Similarity=0.192  Sum_probs=119.5

Q ss_pred             ccccCcccCeEEEcCCCC-eeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCC
Q 026011           82 AATEKSLYDFTVKDIDGK-DVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG  158 (245)
Q Consensus        82 ~~~g~~~pdf~l~~~~G~-~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~  158 (245)
                      ..+|+++|||++++.+|+ +++|+++ +||++||+|| +.|||.|..++..+++.+++|+++|++|++||.|        
T Consensus         2 i~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~D--------   73 (219)
T d1xcca_           2 YHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCN--------   73 (219)
T ss_dssp             CCTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESS--------
T ss_pred             CcCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCc--------
Confidence            468999999999977543 7899996 8999999998 9999999999999999999999999999999998        


Q ss_pred             ChHHHHHHHHHh------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCC---
Q 026011          159 SNPEIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT---  229 (245)
Q Consensus       159 ~~~~~~~~~~~~------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~---  229 (245)
                      +.+.+++|..+.      .+++||+++|.+   ..+.+.|+++....+...+..+ ..+.+||||++|+|++.+...   
T Consensus        74 s~~sh~~w~~~~~~~~~~~~l~fpllsD~~---~~va~~ygv~~~~~~~~~~~~~-~~R~tFiIDp~g~Ir~~~~~~~~~  149 (219)
T d1xcca_          74 SKESHDKWIEDIKYYGKLNKWEIPIVCDES---RELANKLKIMDEQEKDITGLPL-TCRCLFFISPEKKIKATVLYPATT  149 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTCSCCCCCEEECTT---SHHHHHHTCEEEEEECTTSCEE-ECEEEEEECTTSBEEEEEEECTTB
T ss_pred             cHhHHhHHhhhhHhhcccCCCCcccccccc---cHHHHHhCCcccccccCcccce-eeeeeEEEcCcceEEEEEEeCCCc
Confidence            899999998332      378999997755   5688889877654432222111 238999999999998664221   


Q ss_pred             -CChHHHHHHHHHHh
Q 026011          230 -TSPFQIEKDIQKLV  243 (245)
Q Consensus       230 -~~~~~l~~~l~~ll  243 (245)
                       .+.+++.+.|+.+.
T Consensus       150 gr~~~EiLr~l~aLQ  164 (219)
T d1xcca_         150 GRNAHEILRVLKSLQ  164 (219)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH
Confidence             26778888887764

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-23  Score=158.99  Aligned_cols=151  Identities=13%  Similarity=0.230  Sum_probs=113.3

Q ss_pred             CeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhhCC----cEEEEEecCCCCCCCCCChHHHH
Q 026011           90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQG----FEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        90 df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~~g----~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      ||+|+|++|++++|++|+||++||+||++||+ .|...++.+.++++++.+.+    +.++.++.+    ++.+..+...
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   77 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID----PERDTKEAIA   77 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESC----TTTCCHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccC----CCcccHHHHH
Confidence            79999999999999999999999999999998 79999999999999887654    456666665    5566778888


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhhccc--CCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA--GGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~--~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      ++. ..++.++..+.............|+......  +...++.+.|.+++||||++|+|+.+|.+..+++++.++|+++
T Consensus        78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~  156 (160)
T d1wp0a1          78 NYV-KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH  156 (160)
T ss_dssp             HHH-HTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred             HHH-hhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            887 7777777666322111111122222111111  1112345889999999999999999998888999999999999


Q ss_pred             hhC
Q 026011          243 VVA  245 (245)
Q Consensus       243 l~~  245 (245)
                      |++
T Consensus       157 lk~  159 (160)
T d1wp0a1         157 MRP  159 (160)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            875

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.89  E-value=2.7e-23  Score=160.55  Aligned_cols=137  Identities=20%  Similarity=0.181  Sum_probs=110.1

Q ss_pred             cccCeEEEc----CCCCeeecCCCCC-CEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCCh
Q 026011           87 SLYDFTVKD----IDGKDVPLSKFKG-KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  160 (245)
Q Consensus        87 ~~pdf~l~~----~~G~~v~l~~~~g-k~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~  160 (245)
                      ++|||++++    .+|++++|+|++| |++||+|| +.|||.|..+++.|++.+++|++.|++||+||.|        +.
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D--------~~   72 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD--------SK   72 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS--------CH
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCC--------cH
Confidence            589999995    4556899999998 78999888 8999999999999999999999999999999988        89


Q ss_pred             HHHHHHHHHh-------cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCC---
Q 026011          161 PEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT---  230 (245)
Q Consensus       161 ~~~~~~~~~~-------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~---  230 (245)
                      +.+++|. ++       .+++||++.|.+   ..+.+.|+++...        ....+.+||||++|+|++.+.+..   
T Consensus        73 ~~~~~~~-~~~~~~~~~~~~~f~llsD~~---~~~~~~ygv~~~~--------~~~~R~tfiId~~G~I~~~~~~~~~~~  140 (170)
T d2h01a1          73 FTHLAWK-KTPLSQGGIGNIKHTLISDIS---KSIARSYDVLFNE--------SVALRAFVLIDKQGVVQHLLVNNLALG  140 (170)
T ss_dssp             HHHHHHH-TSCGGGTCCCSCSSEEEECTT---SHHHHHTTCEETT--------TEECCEEEEECTTSBEEEEEEGGGSSG
T ss_pred             HHHHhHh-hhhhhhccccccCCceeEcCc---cHHHHHhCCcccc--------ccceeeeEEEcCCCeEEEEEEecCCCC
Confidence            9999998 54       457899997654   4567777764321        123389999999999998874433   


Q ss_pred             -ChHHHHHHHHHHh
Q 026011          231 -SPFQIEKDIQKLV  243 (245)
Q Consensus       231 -~~~~l~~~l~~ll  243 (245)
                       +.+++.+.|+.|.
T Consensus       141 ~~~~eil~~l~~lq  154 (170)
T d2h01a1         141 RSVDEILRLIDALQ  154 (170)
T ss_dssp             GGHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhh
Confidence             4456777777654

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.89  E-value=3.1e-23  Score=159.38  Aligned_cols=131  Identities=11%  Similarity=0.073  Sum_probs=102.4

Q ss_pred             cccccCcccCeEEEcCCCCeeecCCCCCCEEEEEEe-cCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCC
Q 026011           81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS  159 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~-~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~  159 (245)
                      .+++|+++|||+|+|.+|++++|++++||++||+|| +.|||.|..+++.|++.+++++  |+.|++||.|        +
T Consensus        15 ~p~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d--------~   84 (164)
T d1q98a_          15 FPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISAD--------L   84 (164)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESS--------C
T ss_pred             CCCCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCC--------c
Confidence            457999999999999999999999999999999998 7799999999999999999995  5999999998        8


Q ss_pred             hHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                      ++.+++|. +++++.+..+.+.+ ....+...|+...... ...|  + ..|++||||++|+|++.+.
T Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~-~~~g--~-~~Ra~fvID~~G~I~y~~~  146 (164)
T d1q98a_          85 PFAQARFC-GAEGIENAKTVSTF-RNHALHSQLGVDIQTG-PLAG--L-TSRAVIVLDEQNNVLHSQL  146 (164)
T ss_dssp             HHHHTTCT-TTTTCTTEEEEECT-TCTHHHHHTTCEECSS-TTTT--S-BCCEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHH-HHhCCccccccccc-cchhHHHhhceecccC-cccc--C-cccEEEEECCCCEEEEEEE
Confidence            99999998 77888755443222 2333445555432211 1111  1 1389999999999998763

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.88  E-value=5.1e-24  Score=160.20  Aligned_cols=121  Identities=16%  Similarity=0.211  Sum_probs=93.0

Q ss_pred             ccCcccCeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHH
Q 026011           84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPE  162 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~  162 (245)
                      .++.+|+|++.+.+|++++|++++||+|||+||++||++|..+++.|.+++++|.++ ++.+|+|+.|       ++.++
T Consensus         2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d-------~~~~~   74 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWD-------EEEDG   74 (144)
T ss_dssp             GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------CSHHH
T ss_pred             CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccccccccccccc-------ccHHH
Confidence            577899999999999999999999999999999999999999999999999999654 6999999988       36677


Q ss_pred             HHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEec
Q 026011          163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERY  226 (245)
Q Consensus       163 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~~  226 (245)
                      ...+........+++..+ + ....+.+.|+             |..+|++||||++ |+|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~-d-~~~~l~~~y~-------------v~~~Pt~~liD~~~G~Vi~~~  124 (144)
T d1o8xa_          75 FAGYFAKMPWLAVPFAQS-E-AVQKLSKHFN-------------VESIPTLIGVDADSGDVVTTR  124 (144)
T ss_dssp             HHHHHTTCSSEECCGGGH-H-HHHHHHHHTT-------------CCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHHhhccccceeeecc-c-chhhHHHHcC-------------CCcCCEEEEEeCCCCEEEEEe
Confidence            777763333333343311 1 1112223333             6677999999998 8987553

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.88  E-value=1.7e-23  Score=157.58  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             CeEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC-CcEEEEEecCCCCCCCCCChHHHHHHHH
Q 026011           90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFAC  168 (245)
Q Consensus        90 df~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~-g~~vv~Vs~D~~~~~~~~~~~~~~~~~~  168 (245)
                      .+.+.+.+|++++|++++||+|||+||++||++|+.++|.|++++++++++ +++||+|+.|       ++.++..+|. 
T Consensus        10 ~~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D-------~~~~~~~~~~-   81 (144)
T d1i5ga_          10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWD-------ESAEDFKDYY-   81 (144)
T ss_dssp             CSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC-------SSHHHHHHHH-
T ss_pred             chhhccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEecc-------ccHHHHHHHH-
Confidence            567777888999999999999999999999999999999999999999875 6999999998       3778888888 


Q ss_pred             HhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC-CcEEEe
Q 026011          169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIER  225 (245)
Q Consensus       169 ~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~-G~i~~~  225 (245)
                      ++++..++.+.+.+. ...+.+.|+             |..+|+++|||++ |+|+..
T Consensus        82 ~~~~~~~~~~~d~~~-~~~l~~~y~-------------v~~iPt~~lid~~~G~vi~~  125 (144)
T d1i5ga_          82 AKMPWLALPFEDRKG-MEFLTTGFD-------------VKSIPTLVGVEADSGNIITT  125 (144)
T ss_dssp             TTCSSEECCTTCHHH-HHHHHHHTT-------------CCSSSEEEEEETTTCCEEES
T ss_pred             HhCCCCceeeEChHH-HHHHHHHCC-------------CCCcCEEEEEeCCCCEEEee
Confidence            665544333311110 001122222             6677999999996 899754

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=6.9e-21  Score=145.22  Aligned_cols=151  Identities=17%  Similarity=0.233  Sum_probs=95.4

Q ss_pred             cCeEEEcCCCCeeecCCCCCCEEEEEEecCCCC-CChHHHHHHHHHHHHhhh---CCcEEEEEecCCCCCCCCCChHHHH
Q 026011           89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPGSNPEIK  164 (245)
Q Consensus        89 pdf~l~~~~G~~v~l~~~~gk~vll~F~~t~C~-~C~~~~~~l~~l~~~~~~---~g~~vv~Vs~D~~~~~~~~~~~~~~  164 (245)
                      +||+|+|++|+++++++++||++||+||++||+ .|......+..+++.+.+   ..+.++.++.+    +..++.+...
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   82 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD----PARDSPAVLK   82 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC----TTTCCHHHHH
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccc----cccCchhhhh
Confidence            589999999999999999999999999999998 666666777666655543   34667777765    3344556666


Q ss_pred             HHHHHhcCCCcceeeccCCCCCCcchhhhhhh---cccCCCCCCccccceeEEEECCCCcEEEecCCCCChHH----HHH
Q 026011          165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK---SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ----IEK  237 (245)
Q Consensus       165 ~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~---~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~----l~~  237 (245)
                      .+. ..++..+..+.............++...   ....+..++.+.|+|++||||++|+|+.+|.+..+++.    |.+
T Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e  161 (169)
T d2b7ka1          83 EYL-SDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVE  161 (169)
T ss_dssp             HHH-TTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHH
T ss_pred             hhh-ccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHH
Confidence            665 4545444443211100000011111110   11112344568899999999999999999988777765    555


Q ss_pred             HHHHHhh
Q 026011          238 DIQKLVV  244 (245)
Q Consensus       238 ~l~~ll~  244 (245)
                      .|+++|.
T Consensus       162 ~ik~ll~  168 (169)
T d2b7ka1         162 HVKSYVP  168 (169)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHhC
Confidence            5665554

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-17  Score=125.37  Aligned_cols=134  Identities=14%  Similarity=0.093  Sum_probs=97.0

Q ss_pred             cccccCcccCeEEEc-CCCCeeecCCC-CCCEEEEEEe-cCCCCCCh-HHHHHHHHHHHHhhhCCc-EEEEEecCCCCCC
Q 026011           81 TAATEKSLYDFTVKD-IDGKDVPLSKF-KGKVLLIVNV-ASRCGLTP-SNYSELSHLYEKYKTQGF-EILAFPCNQFGGQ  155 (245)
Q Consensus        81 ~~~~g~~~pdf~l~~-~~G~~v~l~~~-~gk~vll~F~-~t~C~~C~-~~~~~l~~l~~~~~~~g~-~vv~Vs~D~~~~~  155 (245)
                      ++++|+.+|+|+|.+ .+|+.++|+++ +||++||+|| ..|||.|. .+++.+.+.++++.++|. .|+++++|     
T Consensus         2 pikVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~-----   76 (161)
T d1hd2a_           2 PIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN-----   76 (161)
T ss_dssp             CCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS-----
T ss_pred             CCCCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecC-----
Confidence            468999999999986 56899999995 8999988888 89999995 588889999999999987 46678887     


Q ss_pred             CCCChHHHHHHHHHhcCC--CcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          156 EPGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~--~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                         +...++.|. ...+.  .+++++|.+   ..+.+.|+.+....+...+..+.. ..+++|++||+|++.+.
T Consensus        77 ---~~~~~~~~~-~~~~~~~~~~llsD~~---~~~a~~~g~~~~~~~~g~~~~~~s-~r~~~I~~~G~I~~~~v  142 (161)
T d1hd2a_          77 ---DAFVTGEWG-RAHKAEGKVRLLADPT---GAFGKETDLLLDDSLVSIFGNRRL-KRFSMVVQDGIVKALNV  142 (161)
T ss_dssp             ---CHHHHHHHH-HHTTCTTTCEEEECTT---CHHHHHHTCBCCSTTHHHHSSCCB-CCEEEEEETTEEEEEEE
T ss_pred             ---chhhhhhhh-hhcccccccccccCCc---ceeeeeeeeeeccccCccccccEE-eEEEEEECCCEEEEEEE
Confidence               788888887 44443  578886533   446777775533222100000111 34566667999988764

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.64  E-value=2.2e-16  Score=120.33  Aligned_cols=133  Identities=17%  Similarity=0.124  Sum_probs=97.7

Q ss_pred             ccccccCcccCeEEE----cCCCCeeecCCC-CCCEEEEEEe-cCCCCCCh-HHHHHHHHHHHHhhhCC-cEEEEEecCC
Q 026011           80 ATAATEKSLYDFTVK----DIDGKDVPLSKF-KGKVLLIVNV-ASRCGLTP-SNYSELSHLYEKYKTQG-FEILAFPCNQ  151 (245)
Q Consensus        80 ~~~~~g~~~pdf~l~----~~~G~~v~l~~~-~gk~vll~F~-~t~C~~C~-~~~~~l~~l~~~~~~~g-~~vv~Vs~D~  151 (245)
                      +.+++|+++|||+|.    +.++++++|+++ +||+|||+|| ..|++.|. ++++...+..+++.++| .+|++||+| 
T Consensus         2 ~~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd-   80 (162)
T d1tp9a1           2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN-   80 (162)
T ss_dssp             CCCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS-
T ss_pred             CCCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeecc-
Confidence            457899999999996    334567999884 9999988887 99999996 56677777788888876 479999998 


Q ss_pred             CCCCCCCChHHHHHHHHHhcCCC--cceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC
Q 026011          152 FGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP  227 (245)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~  227 (245)
                             +...+++|. ...+..  ++++.|  .. ..+.+.|+.+....+..+  .....+.+|||| ||+|++.+.
T Consensus        81 -------~~~~~~~~~-~~~~~~~~~~~lsD--~~-~~~~~~~g~~~~~~~~g~--g~~~~R~tfiId-dg~I~~~~v  144 (162)
T d1tp9a1          81 -------DPFVMKAWA-KSYPENKHVKFLAD--GS-ATYTHALGLELDLQEKGL--GTRSRRFALLVD-DLKVKAANI  144 (162)
T ss_dssp             -------CHHHHHHHH-HTCTTCSSEEEEEC--TT-SHHHHHTTCEEEETTTTS--EEEECCEEEEEE-TTEEEEEEE
T ss_pred             -------chhhhhhhh-hhcccccccccccc--hh-hHHHhhhhhccccccccC--CcEEEEEEEEEE-CCEEEEEEE
Confidence                   899999998 666654  666654  33 335666765443322111  122347899999 899998764

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=4.2e-16  Score=111.27  Aligned_cols=103  Identities=20%  Similarity=0.322  Sum_probs=76.1

Q ss_pred             eEEEcCCCCeeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHh
Q 026011           91 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR  170 (245)
Q Consensus        91 f~l~~~~G~~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~  170 (245)
                      +++.|.+.-.-.|.+..||++||+||++||++|+...|.++++.+++++. +.++.|.+|+       ..    +.+ ++
T Consensus         8 ~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~d~-------~~----~l~-~~   74 (111)
T d1xwaa_           8 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVDE-------CE----DIA-ME   74 (111)
T ss_dssp             EECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CH----HHH-HH
T ss_pred             EEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc-eEEEEEEeec-------Cc----chh-hc
Confidence            33444333233455567999999999999999999999999999999876 8888898772       22    233 44


Q ss_pred             cCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHH
Q 026011          171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       171 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~l  242 (245)
                      ++                                  |...|+++++ ++|+++.++.|. ++++|++.|++-
T Consensus        75 ~~----------------------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          75 YN----------------------------------ISSMPTFVFL-KNGVKVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             TT----------------------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHT
T ss_pred             CC----------------------------------CccccEEEEE-ECCEEEEEEeCC-CHHHHHHHHHhc
Confidence            33                                  3344987777 799999999986 567788877753

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.57  E-value=5.1e-15  Score=104.74  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=74.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|++||+||++||++|....|.+.++.+++.++ +.++.|++|.       ..    +.+ ++|+              
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~d~-------~~----~l~-~~~~--------------   70 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDE-------SP----NVA-SEYG--------------   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHH-HHHT--------------
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhccc-ceEEEEeccc-------ch----hHH-HHhc--------------
Confidence            4689999999999999999999999999998876 8999998872       22    222 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+.+.++.|..+.++|.+.|++.|+
T Consensus        71 --------------------V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          71 --------------------IRSIPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             --------------------CCSSCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             --------------------ccceEEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence                                3444998888 589999999999999999999999874

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.56  E-value=1e-14  Score=103.33  Aligned_cols=89  Identities=13%  Similarity=0.147  Sum_probs=73.7

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +|++||.||++||++|+...|.+.++.+++.++ +.++.|++|.       .+    +.+ ++|+               
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~d~-------~~----~l~-~~~~---------------   71 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP-------NP----TTV-KKYK---------------   71 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT-------CH----HHH-HHTT---------------
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcCCc-ceeceecccc-------cH----HHH-HHhc---------------
Confidence            579999999999999999999999999999876 8999998872       22    223 4433               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                         |..+|+++++ ++|+++.++.|..+.+++.+.|++.|+
T Consensus        72 -------------------I~~~Pt~~~~-~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          72 -------------------VEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             -------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -------------------ccCCCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence                               3444998888 489999999999999999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.56  E-value=2.5e-15  Score=106.03  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|++||+||++||++|+.+.|.+.++.++++++ +.++.|++|.        .   .+.+ ++|+              
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~vd~~~--------~---~~~~-~~~~--------------   68 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDE--------N---PETT-SQFG--------------   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT--------C---HHHH-HHTT--------------
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc-eEEEEEECCC--------C---cccH-HHCC--------------
Confidence            4689999999999999999999999999999875 9999999872        2   2223 4443              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+.+.++.|..+.++|.+.|+++|+
T Consensus        69 --------------------V~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~L~  105 (105)
T d1nw2a_          69 --------------------IMSIPTLILF-KGGEPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             --------------------CCBSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTCC
T ss_pred             --------------------cceeeEEEEE-ECCEEEEEEECCCCHHHHHHHHHHHhC
Confidence                                4445988888 689999999999999999999988764

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=8.7e-16  Score=110.48  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=70.8

Q ss_pred             eecCCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcce
Q 026011          101 VPLSKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI  177 (245)
Q Consensus       101 v~l~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~  177 (245)
                      ..+.+.+||++||+||++||++|+.+.|.+   .++.+.+.  ++.++.+.++       ...+...+++ ++++     
T Consensus        15 ~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~-------~~~~~~~~l~-~~~~-----   79 (117)
T d2fwha1          15 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVT-------ANDAQDVALL-KHLN-----   79 (117)
T ss_dssp             HHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECT-------TCCHHHHHHH-HHTT-----
T ss_pred             HHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEecccc-------cchhHHHHHH-hhhe-----
Confidence            345566899999999999999999998887   44555443  3666666654       1334445555 4543     


Q ss_pred             eeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEE--ecCCCCChHHHHHHHHH
Q 026011          178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE--RYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       178 ~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~--~~~g~~~~~~l~~~l~~  241 (245)
                                                   |.++|+++++|++|+++.  ++.|..+++++.+.|++
T Consensus        80 -----------------------------v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          80 -----------------------------VLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             -----------------------------CCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             -----------------------------hhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence                                         344599999999999874  56788899999888864

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.53  E-value=9.8e-15  Score=102.69  Aligned_cols=88  Identities=15%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +|++||+||++||++|+.+.|.+.++.+++.++ +.++.|+.|.       ..    +.+ ++|+               
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d~-------~~----~l~-~~~~---------------   68 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE-------AP----GIA-TQYN---------------   68 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHH-HHTT---------------
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhhcCc-cceeEEeccc-------ch----hhh-hhcc---------------
Confidence            579999999999999999999999999999876 7888898872       22    233 4433               


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                         |+.+|+++++ ++|+.+.++.|..+.++|.+.|++.|
T Consensus        69 -------------------V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          69 -------------------IRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             -------------------CCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             -------------------eeeeeEEEEE-EcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence                               4445987777 79999999999999999999999875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.2e-14  Score=102.96  Aligned_cols=90  Identities=17%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|+|||+||++||++|+...+.+.++.+++.++ +.++.|.+|+       ..    +.+ ++|+              
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~vd~d~-------~~----~l~-~~~~--------------   71 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----GTA-PKYG--------------   71 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CT----THH-HHTT--------------
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc-eeeeeccccc-------hh----hHH-HHhC--------------
Confidence            3689999999999999999999999999888765 8888888772       21    122 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |.++|+++++ ++|+++.++.|..+.++|.+.|++.|+
T Consensus        72 --------------------v~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          72 --------------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --------------------CCcEEEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence                                4445987777 799999999999999999999999874

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2e-14  Score=101.31  Aligned_cols=87  Identities=21%  Similarity=0.283  Sum_probs=70.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++|+|||+||++||++|+...|.+.++.+++++  +.++.|..|+       ..    +.+ ++++              
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~d~-------~~----~~~-~~~~--------------   70 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDD-------CQ----DVA-SECE--------------   70 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------CH----HHH-HHTT--------------
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc--ceeeeccccc-------CH----hHH-HHcC--------------
Confidence            468999999999999999999999999998865  6788888762       22    233 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ +||+.+.++.|. ++++|++.|+++|
T Consensus        71 --------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          71 --------------------VKCMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             --------------------CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             --------------------ceEEEEEEEE-ECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence                                4445988888 899999999995 7889999999875

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.51  E-value=3.4e-14  Score=101.32  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|++||+||++||++|+...|.++++.+++.++ +.++.|++|+       ..    +.. ++++              
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~d~-------~~----~l~-~~~~--------------   75 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK-VIFLKVDVDA-------VA----AVA-EAAG--------------   75 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------TH----HHH-HHHT--------------
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce-EEEEEeeccc-------cc----ccc-cccc--------------
Confidence            5789999999999999999999999999999865 9999998872       22    222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                                          |..+|+++++ ++|+.+.++.|. +.++|.+.|++..++
T Consensus        76 --------------------v~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~~aa  112 (112)
T d1ep7a_          76 --------------------ITAMPTFHVY-KDGVKADDLVGA-SQDKLKALVAKHAAA  112 (112)
T ss_dssp             --------------------CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHCC
T ss_pred             --------------------ccCCCEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHHhCC
Confidence                                3444987777 799999999985 789999999988654

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.50  E-value=2.9e-14  Score=108.51  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=91.5

Q ss_pred             ccCcccCeEEEcCCC---CeeecCCC-CCCEEEEEEe-cCCCCCChHHHHHHHHHHH-HhhhCCc-EEEEEecCCCCCCC
Q 026011           84 TEKSLYDFTVKDIDG---KDVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYE-KYKTQGF-EILAFPCNQFGGQE  156 (245)
Q Consensus        84 ~g~~~pdf~l~~~~G---~~v~l~~~-~gk~vll~F~-~t~C~~C~~~~~~l~~l~~-~~~~~g~-~vv~Vs~D~~~~~~  156 (245)
                      .|+++|||+++..+|   +.++|+++ +||+|||+|+ +.++|.|..++..+.+.+. .+..+++ .++.++.+      
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~------   76 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN------   76 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS------
T ss_pred             CCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecC------
Confidence            699999999998777   46889995 9998888777 9999999998877665543 3344443 45666665      


Q ss_pred             CCChHHHHHHHHHhcCCCcceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCC
Q 026011          157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP  228 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g  228 (245)
                        +....++|..+.....++++.|.+   ....+.|+........  |......+.+|||| ||+|++.+..
T Consensus        77 --d~~~~~a~~~~~~~~~~~llsD~~---~~~~~~~g~~~~~~~~--g~g~~s~R~~~Iid-dG~I~~~~v~  140 (163)
T d1nm3a2          77 --DTFVMNAWKEDEKSENISFIPDGN---GEFTEGMGMLVGKEDL--GFGKRSWRYSMLVK-NGVVEKMFIE  140 (163)
T ss_dssp             --CHHHHHHHHHHTTCTTSEEEECTT---SHHHHHTTCEEECTTT--TCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred             --CHHHHHHHhhhhccCceeeeccCC---hHHHHHhhhhcccccc--ccccccceEEEEEe-CCEEEEEEEe
Confidence              667777777566677899996644   3355566643332221  11133448899999 9999887643

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.50  E-value=2.2e-14  Score=102.66  Aligned_cols=88  Identities=16%  Similarity=0.208  Sum_probs=70.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++||+||++||++|+...|.+.++.+++++  +.++.|..|        ..   .+.+ ++|+              
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~~--------~~---~~l~-~~~~--------------   78 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--VLFLKVDTD--------EL---KSVA-SDWA--------------   78 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS--EEEEEEETT--------TS---HHHH-HHTT--------------
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhcccccc--cceeEEEee--------ec---eeec-cccc--------------
Confidence            478999999999999999999999999998864  888888876        22   2333 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|. ++++|++.|++.|+
T Consensus        79 --------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~la  114 (114)
T d1xfla_          79 --------------------IQAMPTFMFL-KEGKILDKVVGA-KKDELQSTIAKHLA  114 (114)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHCC
T ss_pred             --------------------eeeeEEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHhhC
Confidence                                3444987777 899999999985 78899999988763

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.49  E-value=8e-14  Score=98.37  Aligned_cols=95  Identities=11%  Similarity=0.087  Sum_probs=70.5

Q ss_pred             cCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC---CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceee
Q 026011          103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ---GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD  179 (245)
Q Consensus       103 l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~---g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  179 (245)
                      +.+..++++|++||++||++|+.+.|.++++..+....   .+.++.|+.++           ..+.+ ++|+       
T Consensus        10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~-----------~~~l~-~~~~-------   70 (107)
T d1a8la2          10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-----------YPEWA-DQYN-------   70 (107)
T ss_dssp             HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-----------CHHHH-HHTT-------
T ss_pred             HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc-----------ccccc-cccc-------
Confidence            45556667788899999999999999999997664332   36666676551           12333 4443       


Q ss_pred             ccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          180 KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       180 d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                 |.++|++ +++++|+++.++.|..+.+++.+.|++.|+
T Consensus        71 ---------------------------V~~vPTi-~i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          71 ---------------------------VMAVPKI-VIQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             ---------------------------CCSSCEE-EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ---------------------------cccceEE-EEEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence                                       4445975 566999999999999999999999998874

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.49  E-value=4.9e-14  Score=101.53  Aligned_cols=92  Identities=12%  Similarity=0.165  Sum_probs=68.0

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      ..+++|++.||++|||+|+...|.|.++.++|.+..+.++.|..|           +..+.+ ++|+             
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d-----------~~~~l~-~~~~-------------   82 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE-----------QSEAIG-DRFN-------------   82 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHH-----------HHHHHH-HTTT-------------
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC-----------CCHHHH-HhcC-------------
Confidence            345689999999999999999999999999998866888888543           344454 5544             


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                           |..+|+++++ ++|+.+.++.|..+.+++.+.|+++|+
T Consensus        83 ---------------------V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          83 ---------------------VRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             ---------------------CCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             ---------------------cCcceEEEEE-EcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence                                 4445988888 799999999999999999999999874

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.5e-14  Score=99.84  Aligned_cols=88  Identities=14%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|+++|+||++||++|+...|.|.++.+++++  +.++.|.+|        ...   +.+ ++++              
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~--~~f~~vd~d--------~~~---~l~-~~~~--------------   71 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ--AVFLEVDVH--------QCQ---GTA-ATNN--------------   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT--SEEEEEETT--------TSH---HHH-HHTT--------------
T ss_pred             CCCEEEEEEECCCCCCccccchhhhcccccccc--ccccccccc--------cch---hhh-hhcC--------------
Confidence            478999999999999999999999999999874  889999877        222   222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+.+.++.|. ++++|++.|++.|+
T Consensus        72 --------------------v~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~le  107 (107)
T d1gh2a_          72 --------------------ISATPTFQFF-RNKVRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             --------------------ceeceEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHhhC
Confidence                                3444988777 899999999995 88999999998874

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.47  E-value=6.5e-14  Score=100.00  Aligned_cols=89  Identities=9%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++++++|+||++||++|+...|.|.++.+++.  ++.++.|++|+       .    .+.+ ++|+              
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------~----~~l~-~~~~--------------   76 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN-------N----SEIV-SKCR--------------   76 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT-------C----HHHH-HHTT--------------
T ss_pred             CCCeEEEEEECCCCccchhhceeccccccccc--ccccccccccc-------c----hhhH-HHcc--------------
Confidence            46799999999999999999999999999986  49999998872       2    2233 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhhC
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA  245 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~~  245 (245)
                                          |..+|+++++ ++|+.+.++.|. +++.+.+.|+++|++
T Consensus        77 --------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~l~~~ike  113 (113)
T d1r26a_          77 --------------------VLQLPTFIIA-RSGKMLGHVIGA-NPGMLRQKLRDIIKD  113 (113)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHHHC
T ss_pred             --------------------ccCCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHHhcC
Confidence                                3444987777 899999999995 688999999999874

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.2e-14  Score=103.14  Aligned_cols=91  Identities=12%  Similarity=0.101  Sum_probs=75.5

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      ++++|+|.||+.|||+|+...|.|.++.++|.++.+.+..|.+|           +..+.+ ++|+              
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d-----------~~~~la-~~~~--------------   88 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE-----------QSEAIG-DRFG--------------   88 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH-----------HHHHHH-HHHT--------------
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEec-----------CCHHHH-Hhhc--------------
Confidence            45789999999999999999999999999999877777788544           334444 4544              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+.+.++.|..+.+++.+.|++++.
T Consensus        89 --------------------V~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~ll~  125 (132)
T d2hfda1          89 --------------------VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_dssp             --------------------CCSCCEEEEE-ETTEEEEEECCCSCHHHHHHHHHHHHS
T ss_pred             --------------------cCcceeEEEE-EcCcEeeeecCCCCHHHHHHHHHHHhC
Confidence                                3444988888 899999999999999999999999875

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.45  E-value=2.1e-13  Score=97.24  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=69.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|+|||+||++||++|+...|.|.++.+++.+  +.++.|.+|.       ..    +.+ ++++              
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~-------~~----~l~-~~~~--------------   76 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--VTFLKVDVDE-------LK----AVA-EEWN--------------   76 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS--EEEEEEETTT-------CH----HHH-HHHH--------------
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCCC--ceEEeeeeec-------cc----ccc-ccCe--------------
Confidence            568999999999999999999999999998854  7888888762       22    222 3322              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                          |..+|+++++ ++|+++.++.|. +.++|.+.|++...
T Consensus        77 --------------------I~~~Pt~~~~-k~G~~v~~~~G~-~~~~l~~~i~k~as  112 (113)
T d1ti3a_          77 --------------------VEAMPTFIFL-KDGKLVDKTVGA-DKDGLPTLVAKHAT  112 (113)
T ss_dssp             --------------------CSSTTEEEEE-ETTEEEEEEECC-CTTHHHHHHHHHHH
T ss_pred             --------------------ecccceEEEE-ECCEEEEEEcCC-CHHHHHHHHHHHhC
Confidence                                4445987777 699999999984 77889999988653

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.45  E-value=6.8e-14  Score=99.72  Aligned_cols=88  Identities=19%  Similarity=0.241  Sum_probs=69.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+|+++|+||++||++|+...|.+.++.+++.+  +.++.|.+|+       ..   .+.+ ++++              
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--v~~~~vd~~~-------~~---~~l~-~~~~--------------   76 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQ-------EN---KTLA-KELG--------------   76 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSS-------TT---HHHH-HHHC--------------
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc--ceeecccccc-------cc---hhhH-hhee--------------
Confidence            457999999999999999999999999999864  7888888761       12   2222 3333              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |+.+|+++++ ++|+++.++.|. +++++.+.|++..
T Consensus        77 --------------------V~~~Pt~~~~-k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          77 --------------------IRVVPTFKIL-KENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             --------------------CSSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             --------------------eccCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence                                4445998888 899999999996 6778888888764

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.40  E-value=1.5e-15  Score=116.11  Aligned_cols=113  Identities=10%  Similarity=0.028  Sum_probs=79.9

Q ss_pred             ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeecc
Q 026011          102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV  181 (245)
Q Consensus       102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~  181 (245)
                      .+++++|+++++.||++|||+|+.++|.|+++++++++  +.+..|+.|       +..+...+|. .+.+..+|.+.+.
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~--~~~~~i~~d-------~~~~~~~~~~-~~~~~~~p~~~~~  117 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN--IELAIISKG-------RAEDDLRQRL-ALERIAIPLVLVL  117 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT--EEEEEECHH-------HHHHHTTTTT-TCSSCCSSEEEEE
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC--CcEEEEECc-------cCHHHHHHHH-Hhccccccceeec
Confidence            46678899999999999999999999999999999875  677777666       2445555555 5566677776554


Q ss_pred             CCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       182 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                      |..+..   .+.             +...|++++++++|.+...+.|..+.+.+++.|+
T Consensus       118 d~~~~~---~~~-------------~~~~P~~~~~~~~~~~~~~~~G~~~~~~~~eil~  160 (166)
T d1z6na1         118 DEEFNL---LGR-------------FVERPQAVLDGGPQALAAYKAGDYLEHAIGDVLA  160 (166)
T ss_dssp             CTTCCE---EEE-------------EESSCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             Cccchh---ccc-------------ccccchhheecccceeeeeccccccHHHHHHHHH
Confidence            433221   111             2233888888888888777788776665555544

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.39  E-value=3.9e-13  Score=96.13  Aligned_cols=90  Identities=14%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++++|+||++||++|+...|.|.++.++++.+   +..|.+|.     .+..+..++++ ++++              
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~---v~~v~~~~-----~~~~~~~~~~~-~~~~--------------   81 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH---IYFINSEE-----PSQLNDLQAFR-SRYG--------------   81 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC---CEEEETTC-----GGGHHHHHHHH-HHHT--------------
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh---hhhheeec-----ccccccccccc-cccc--------------
Confidence            4779999999999999999999999999887543   44555541     12344555665 5544              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                                          |.++|+++++ ++|+++.++.|..+.++|.+.|.
T Consensus        82 --------------------V~~~PTli~~-~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          82 --------------------IPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred             --------------------cccccEEEEE-ECCEEEEEEcCCCCHHHHHHHHc
Confidence                                3444998888 69999999999999999888763

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.38  E-value=9.4e-13  Score=88.84  Aligned_cols=84  Identities=11%  Similarity=0.126  Sum_probs=62.3

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +|+.|++||++||++|+...|.+.++.+++.+. +.++.+..|+       .    .+                      
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~d~-------~----~~----------------------   47 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVME-------N----PQ----------------------   47 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS-EEEEEEESSS-------S----CC----------------------
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc-cccccccccc-------c----cc----------------------
Confidence            578899999999999999999999999988765 7777776651       0    00                      


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                      +...|+             |.++|++ +++++|+    +.|..+.+++.+.|++.|
T Consensus        48 la~~~~-------------V~~~Pt~-~i~~~g~----~~G~~~~~~l~~~i~~~L   85 (85)
T d1fo5a_          48 KAMEYG-------------IMAVPTI-VINGDVE----FIGAPTKEALVEAIKKRL   85 (85)
T ss_dssp             TTTSTT-------------TCCSSEE-EETTEEE----CCSSSSSHHHHHHHHHHC
T ss_pred             ccccCC-------------ceEeeEE-EEECCcE----EECCCCHHHHHHHHHhcC
Confidence            111222             5556975 6778876    457778899999998764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.35  E-value=1.1e-12  Score=91.75  Aligned_cols=85  Identities=12%  Similarity=0.155  Sum_probs=66.0

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++++|+||++||++|+...|.+.++.+++.+  ..++.|++|+        ..   +.+ ++++              
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~vd~d~--------~~---~~~-~~~~--------------   68 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDE--------VS---EVT-EKEN--------------   68 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT--------TH---HHH-HHTT--------------
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhcccc--eEEEeecccc--------Cc---cee-eeee--------------
Confidence            468999999999999999999999999999865  6788888772        22   223 3433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~  241 (245)
                                          |..+|+++++ ++|+.+.++.|. +.++|.+.|++
T Consensus        69 --------------------V~~~Pt~i~~-k~G~~v~~~~G~-~~~~l~~~i~k  101 (103)
T d1syra_          69 --------------------ITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIEK  101 (103)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHT
T ss_pred             --------------------eecceEEEEE-ECCEEEEEEeCc-CHHHHHHHHHh
Confidence                                3445987666 799999999985 67778777765

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-12  Score=94.35  Aligned_cols=48  Identities=8%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             ecCCCCCCEEEEEEecC-------CCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          102 PLSKFKGKVLLIVNVAS-------RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       102 ~l~~~~gk~vll~F~~t-------~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+++.+||+|+|+||++       ||++|+.+.|.+.++.+++.++ +.++.|++|
T Consensus        15 ~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~-~~~~~vdv~   69 (119)
T d1woua_          15 AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG-CVFIYCQVG   69 (119)
T ss_dssp             HHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT-EEEEEEECC
T ss_pred             HHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc-eEEEEEECC
Confidence            34567899999999996       9999999999999999998765 999999987

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-11  Score=90.89  Aligned_cols=43  Identities=16%  Similarity=-0.030  Sum_probs=39.7

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+|+|||+||++||++|+.+.|.|.++.++++++ +.++.|.+|
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~VDvd   63 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDIT   63 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc-ceEEEeecc
Confidence            4689999999999999999999999999999875 899999887

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.26  E-value=6.7e-12  Score=84.58  Aligned_cols=82  Identities=10%  Similarity=0.082  Sum_probs=60.4

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCCcch
Q 026011          111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAP  190 (245)
Q Consensus       111 vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~  190 (245)
                      .|..||++||++|+...|.++++.+++.++ +.++.|++|+       ..    +.+ ++|+                  
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~d~-------~~----~l~-~~~~------------------   52 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIMV-------DR----EKA-IEYG------------------   52 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSS-CCEEEECTTT-------CG----GGG-GGTC------------------
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccc-cccccccccc-------ch----hhH-HhcC------------------
Confidence            356699999999999999999999999865 9999998762       11    112 3322                  


Q ss_pred             hhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          191 VYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       191 ~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                      |.++|++ ++|++|    ++.|..+.+++.+.|++.|+
T Consensus        53 ----------------V~~~Pt~-~~~~~~----~~~G~~~~~~l~~~i~~~l~   85 (85)
T d1nhoa_          53 ----------------LMAVPAI-AINGVV----RFVGAPSREELFEAINDEME   85 (85)
T ss_dssp             ----------------SSCSSEE-EETTTE----EEECSSCCHHHHHHHHHHCC
T ss_pred             ----------------ceEeCEE-EECCcE----EEEcCCCHHHHHHHHHHhhC
Confidence                            4555975 455544    35577899999999998763

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=4.5e-11  Score=85.57  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++.+||.||++||++|+...+.+.++.+.+.+.++.+..|++|        ..   .+.. .+++              
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~--------~~---~~l~-~~~~--------------   79 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT--------EN---QDLC-MEHN--------------   79 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT--------TC---HHHH-HHTT--------------
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeecc--------ch---HHHH-HHhc--------------
Confidence            46799999999999999999999999999998777999999887        22   2333 4433              


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcE--EEecCCCCChHHHHHHHHHHh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i--~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                          |..+|+++++ ++|+.  ...|.|..+.++|.+.|++..
T Consensus        80 --------------------v~~~Pti~~f-~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          80 --------------------IPGFPSLKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             --------------------CCSSSEEEEE-ETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             --------------------cccCCeEEEE-ECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence                                3344988888 66644  346788889999999998864

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.21  E-value=5.6e-11  Score=90.42  Aligned_cols=128  Identities=13%  Similarity=0.170  Sum_probs=90.1

Q ss_pred             ccCcccCeEEE----------cCCC-----CeeecCC-CCCCEEEEEEe-cCCCCCChH-HHHHHHHHHHHh-hhCCc-E
Q 026011           84 TEKSLYDFTVK----------DIDG-----KDVPLSK-FKGKVLLIVNV-ASRCGLTPS-NYSELSHLYEKY-KTQGF-E  143 (245)
Q Consensus        84 ~g~~~pdf~l~----------~~~G-----~~v~l~~-~~gk~vll~F~-~t~C~~C~~-~~~~l~~l~~~~-~~~g~-~  143 (245)
                      .|+.+|+.++.          +.+|     +.+++++ ++||.|||++. +.+.|.|.. ++|.+.+.++++ +++|+ +
T Consensus         2 ~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~   81 (179)
T d1xiya1           2 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD   81 (179)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred             CCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCce
Confidence            57788988774          3344     3466777 48886666554 899999965 799999999998 57787 7


Q ss_pred             EEEEecCCCCCCCCCChHHHHHHHHHhcCCCc-ceeeccCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE
Q 026011          144 ILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF-PIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV  222 (245)
Q Consensus       144 vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i  222 (245)
                      |+.||+|        ++..+++|. +.++.+. .++.|  .+ ....+.++......+.  +......+..+||| ||+|
T Consensus        82 I~~iSvn--------D~fv~~aW~-~~~~~~~I~~lsD--~~-g~f~k~lg~~~d~~~~--g~G~Rs~R~a~iid-dg~I  146 (179)
T d1xiya1          82 IYCITNN--------DIYVLKSWF-KSMDIKKIKYISD--GN-SSFTDSMNMLVDKSNF--FMGMRPWRFVAIVE-NNIL  146 (179)
T ss_dssp             EEEEESS--------CHHHHHHHH-HHTTCCSSEEEEC--TT-SHHHHHTTCEEECGGG--TCCEEECCEEEEEE-TTEE
T ss_pred             EEEEecC--------CHHHHHHHH-hhcCcceEEEeeC--Cc-hHHHHhhhcccccccC--CCeeEEeeEEEEEE-CCEE
Confidence            9999998        899999998 6777765 67754  33 3356666654332221  12244557789998 8999


Q ss_pred             EEec
Q 026011          223 IERY  226 (245)
Q Consensus       223 ~~~~  226 (245)
                      .+.+
T Consensus       147 ~~~~  150 (179)
T d1xiya1         147 VKMF  150 (179)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8775

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.5e-13  Score=96.65  Aligned_cols=44  Identities=14%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             CCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       106 ~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      -.||++||+||++||++|+.+.+.+.+..+..+. +..+|.|.+|
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd   66 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNLE   66 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEE
T ss_pred             HcCCcEEEEEEecCCCCceecchhhhhhHHHHHh-cCCcEEEeCC
Confidence            3699999999999999999999998766543332 2345555555

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.14  E-value=4.8e-11  Score=82.21  Aligned_cols=83  Identities=14%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       105 ~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      .++|.+.++.|+++|||+|+...|.++++.+++.+  +.+..|..|.        .   .+.+ ++|+            
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~--i~~~~vd~~~--------~---~~l~-~~~~------------   65 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPR--IKHTAIDGGT--------F---QNEI-TERN------------   65 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTT--EEEEEEETTT--------C---HHHH-HHTT------------
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCCc--eEEEEEeccc--------c---hHHH-hhcc------------
Confidence            45677888999999999999999999999887643  8888888762        2   2333 4444            


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHH
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ  240 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~  240 (245)
                                            |..+|++++   ||+.+  +.|..+.++|.+.|+
T Consensus        66 ----------------------I~~vPt~~~---ng~~~--~~G~~~~~~l~~~le   94 (96)
T d1hyua4          66 ----------------------VMGVPAVFV---NGKEF--GQGRMTLTEIVAKVD   94 (96)
T ss_dssp             ----------------------CCSSSEEEE---TTEEE--EESCCCHHHHHHHHC
T ss_pred             ----------------------cccccEEEE---CCEEE--EecCCCHHHHHHHHh
Confidence                                  334498755   78876  457778888887764

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4e-11  Score=85.85  Aligned_cols=90  Identities=20%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC--cEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g--~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      ++|++||.||++||++|+...|.+.++.+++.+.+  +.++.|.+|.       ..    +.. .+              
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~~----~l~-~~--------------   76 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------ES----DLA-QQ--------------   76 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------CC----SSH-HH--------------
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc-------ch----hHH-HH--------------
Confidence            47899999999999999999999999999997654  5566666541       00    111 12              


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE--EEecCCCCChHHHHHHHHHHh
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i--~~~~~g~~~~~~l~~~l~~ll  243 (245)
                             |+             |.++|+++++ ++|+.  ...|.|..+.++|.+.|++.+
T Consensus        77 -------~~-------------i~~~Pt~~~~-~~G~~~~~~~~~g~~~~~~l~~fi~~~~  116 (120)
T d1meka_          77 -------YG-------------VRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             -------HT-------------CCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             -------hC-------------CccCCeEEEE-ECCeEeeeEEecCCCCHHHHHHHHHHhh
Confidence                   22             4555988777 45533  457888889999999998754

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.3e-10  Score=83.36  Aligned_cols=95  Identities=9%  Similarity=0.040  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHH---HHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l---~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      +.-++|++||+|+++||+.|+..-+..   .++.+.+.++ +.++.|+.|        + ++..++. ++|++       
T Consensus        38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~-fV~~~v~~~--------~-~e~~~~~-~~y~v-------   99 (147)
T d2dlxa1          38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH-FIFWQVYHD--------S-EEGQRYI-QFYKL-------   99 (147)
T ss_dssp             HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT-EEEEEEESS--------S-HHHHHHH-HHHTC-------
T ss_pred             HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh-eeEeeeccc--------c-hhhhhhh-hheec-------
Confidence            334689999999999999999765543   3444444443 777888765        3 4556666 55542       


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECC-CCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~-~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                 ...|++++||+ +|+++..+ |..+++++.+.|++.|.
T Consensus       100 ---------------------------~~~Pti~~idp~~ge~v~~~-~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         100 ---------------------------GDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             ---------------------------CSSSEEEEECTTTCCCCEEE-SSCCHHHHHHHHHHHHH
T ss_pred             ---------------------------CceeEEEEEeCCCCeEeccc-CCCCHHHHHHHHHHHHh
Confidence                                       22399999997 58887666 44688999888888774

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=8.7e-11  Score=86.46  Aligned_cols=89  Identities=17%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .+++|||.||++||++|+...|.+.++.+.|++.+..+..+.+|.        ..   +.+ .+                
T Consensus        29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~--------~~---~~~-~~----------------   80 (140)
T d2b5ea1          29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH--------TE---NDV-RG----------------   80 (140)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG--------GG---CCC-SS----------------
T ss_pred             CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec--------cc---hhc-cc----------------
Confidence            367899999999999999999999999999987655555555551        10   000 11                


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEE--ecCCCCChHHHHHHHHHH
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE--RYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~--~~~g~~~~~~l~~~l~~l  242 (245)
                           |+             |.++|+++++ ++|+...  .|.|..+.+.|.+.|++.
T Consensus        81 -----~~-------------v~~~Ptl~~f-~~g~~~~~~~y~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          81 -----VV-------------IEGYPTIVLY-PGGKKSESVVYQGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             -----CC-------------CSSSSEEEEE-CCTTSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred             -----cc-------------cccCCeEEEE-ECCEEcceeEeCCCCCHHHHHHHHHHc
Confidence                 11             4555998888 4565543  467888999999988764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.96  E-value=1.2e-09  Score=78.58  Aligned_cols=90  Identities=12%  Similarity=0.072  Sum_probs=63.3

Q ss_pred             CCCEEEEEEecCCCCCCh------HHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeec
Q 026011          107 KGKVLLIVNVASRCGLTP------SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK  180 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~------~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  180 (245)
                      +.+.++|.||++||+.|.      ...+.+.+..+.+.+.++.+..|+++        ..   .+.+ ++++        
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~--------~~---~~l~-~~~~--------   86 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE--------KD---AAVA-KKLG--------   86 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETT--------TS---HHHH-HTTT--------
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEee--------cc---cchh-hccc--------
Confidence            457899999999999642      23334444455555667899999876        22   2233 4433        


Q ss_pred             cCCCCCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHhh
Q 026011          181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                                |...|+++++ ++|+.+ .|.|..+.+.|.+.|.++++
T Consensus        87 --------------------------I~~yPTi~~f-~~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          87 --------------------------LTEEDSIYVF-KEDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             --------------------------CCSTTCEEEE-ESSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             --------------------------cccCCcEEEe-ccCccE-EeeCCCCHHHHHHHHHHhcC
Confidence                                      4445998888 567775 68899999999999999875

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=5e-09  Score=74.96  Aligned_cols=95  Identities=9%  Similarity=-0.012  Sum_probs=65.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhC--CcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN  184 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~--g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~  184 (245)
                      +.|.+||.||++||++|+.  |++.++.+++.+.  .+.+..|.+++.      .....++.+ .++++.          
T Consensus        18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~------~~~~n~~l~-~~~~i~----------   78 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDY------GELENKALG-DRYKVD----------   78 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSS------TTCTTHHHH-HHTTCC----------
T ss_pred             cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccc------ccccCHHHH-HHhhcc----------
Confidence            4579999999999999994  8999999887643  367777877631      112223444 454431          


Q ss_pred             CCCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE--EEecCCCCChHHHHHHHHHH
Q 026011          185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQKL  242 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i--~~~~~g~~~~~~l~~~l~~l  242 (245)
                                            +++.|+++++..++..  ...+.|..+.+.|.+.|++-
T Consensus        79 ----------------------~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~  116 (122)
T d2c0ga2          79 ----------------------DKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN  116 (122)
T ss_dssp             ----------------------TTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred             ----------------------cCCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHh
Confidence                                  2234999999665543  34567888899999998864

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.86  E-value=1.5e-09  Score=76.80  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG  141 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g  141 (245)
                      .+|++||.||++||++|+...|.+.++.+.+.+..
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~   53 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSE   53 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhccc
Confidence            46899999999999999999999999999997753

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=1.2e-08  Score=80.32  Aligned_cols=42  Identities=12%  Similarity=0.066  Sum_probs=37.2

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.+|||+||++||+.|...-+.|.++..+|.+  +.++.|..+
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~--vkF~ki~~~  160 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM--VKFCKIRAS  160 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT--SEEEEEEHH
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc--ceEEEEccc
Confidence            355899999999999999999999999999976  899999643

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=2.1e-06  Score=60.83  Aligned_cols=93  Identities=13%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEE-EEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL-AFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG  185 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv-~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~  185 (245)
                      +++.+||.|++.||..|..  ++..++.+++.+..-.++ .|.+...      +.+...+.. ++++.+           
T Consensus        20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~v------d~~~n~~l~-~~~~~~-----------   79 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDY------GDKLNMELS-EKYKLD-----------   79 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCT------TSCHHHHHH-HHHTCS-----------
T ss_pred             hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeec------cccccHHHH-Hhhccc-----------
Confidence            5689999999999988864  778888888877532232 3443210      122223333 443321           


Q ss_pred             CCcchhhhhhhcccCCCCCCccccceeEEEECCCCcE--EEecCCCCChHHHHHHHHH
Q 026011          186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV--IERYPPTTSPFQIEKDIQK  241 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i--~~~~~g~~~~~~l~~~l~~  241 (245)
                                           |...|+++++ ++|+.  ...|.|..+.+.|.+.|++
T Consensus        80 ---------------------I~~yPTi~~f-~~G~~~~~~~y~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          80 ---------------------KESYPVFYLF-RDGDFENPVPYSGAVKVGAIQRWLKG  115 (122)
T ss_dssp             ---------------------SSSCEEEEEE-ESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred             ---------------------ccCCCeEEEE-ecCcccCceecCCCCCHHHHHHHHHh
Confidence                                 3344988877 45542  2467788899999998875

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=8.1e-08  Score=66.01  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=53.8

Q ss_pred             CCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCCC
Q 026011          108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN  187 (245)
Q Consensus       108 gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~~  187 (245)
                      +-++|+.|+..||++|....+.|.++..+|.   .+++.+..|        ..   .++. ++|+..             
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~--------~~---~~l~-~~y~~~-------------   66 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLP--------EN---STWY-ERYKFD-------------   66 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSS--------TT---HHHH-HHSSSS-------------
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccc--------cC---HHHH-HHhccc-------------
Confidence            4578889999999999999888888766554   345444333        22   3344 555432             


Q ss_pred             cchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecCCCCChHHHHHHHHHHh
Q 026011          188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV  243 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~g~~~~~~l~~~l~~ll  243 (245)
                                            +|.+ +|  ||+.+.  .|..+.++|++.|+++.
T Consensus        67 ----------------------VPvl-~i--dg~~~~--~g~~d~~~L~~~L~~l~   95 (100)
T d1wjka_          67 ----------------------IPVF-HL--NGQFLM--MHRVNTSKLEKQLRKLS   95 (100)
T ss_dssp             ----------------------CSEE-EE--SSSEEE--ESSCCHHHHHHHHHSSS
T ss_pred             ----------------------CCce-ee--cCceEE--eCCCCHHHHHHHHHHHh
Confidence                                  1744 45  566653  35678999999998764

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=8.5e-05  Score=55.22  Aligned_cols=48  Identities=8%  Similarity=0.030  Sum_probs=36.0

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+....-..+.+|+.|.-..||+|+...+.+.++.++.   .++++.+.+.
T Consensus        28 ~i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~   75 (169)
T d1v58a1          28 WLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG---KVQLRTLLVG   75 (169)
T ss_dssp             CEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT---SEEEEEEECC
T ss_pred             CceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc---ceeEEEEecc
Confidence            34444445678899999999999999999998877643   2777777654

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.70  E-value=4.6e-05  Score=56.69  Aligned_cols=52  Identities=8%  Similarity=0.020  Sum_probs=39.0

Q ss_pred             CCCee-ecCCC-CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011           97 DGKDV-PLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus        97 ~G~~v-~l~~~-~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      +|... .+..- .++++|+.|+.-.||+|....+.+.++.+++.+. ..++-+.+
T Consensus         5 ~G~~y~~~~~p~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~   58 (181)
T d1beda_           5 EGEHYQVLKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHV   58 (181)
T ss_dssp             BTTTEEECSSCCCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEEC
T ss_pred             CCCCCEECCCCCCCCCEEEEEECCCCccchhhhhhhhhHhhhcccc-cceeEEec
Confidence            45433 34443 5788999999999999999999999999998765 55555444

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.57  E-value=7e-05  Score=55.33  Aligned_cols=50  Identities=16%  Similarity=0.207  Sum_probs=40.2

Q ss_pred             eeecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCC-cEEEEEec
Q 026011          100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPC  149 (245)
Q Consensus       100 ~v~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g-~~vv~Vs~  149 (245)
                      .+.+.+-.+++.|+.|+.-.||+|....+.+.++.+++.+.+ +.++.+..
T Consensus        16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   66 (172)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccc
Confidence            455666667888999999999999999999999999998764 55555554

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=3.8e-05  Score=56.41  Aligned_cols=44  Identities=11%  Similarity=0.156  Sum_probs=32.8

Q ss_pred             ecCCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       102 ~l~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      .+..-.+|.+|+.|.-..||+|+...+.+.++.+    .++.++.+..
T Consensus        20 v~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~~~~~~~~~~   63 (156)
T d1eeja1          20 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LGITVRYLAF   63 (156)
T ss_dssp             EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred             eecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----cCceEEEEec
Confidence            3333457899999999999999999999888754    3466655543

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.34  E-value=0.00093  Score=48.31  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEec
Q 026011          104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC  149 (245)
Q Consensus       104 ~~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~  149 (245)
                      ..-.+|.+|+.|.-..||+|+...+.+.++.+.    +.+++.+..
T Consensus        22 g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~~~v~~~~~   63 (150)
T d1t3ba1          22 PAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAF   63 (150)
T ss_dssp             CCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEEC
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc----CceEEEEEe
Confidence            334578899999999999999999999887653    355555543

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0022  Score=47.46  Aligned_cols=54  Identities=19%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             CCCeee-cC-CCCCCEEEEEEecCCCCCChHHHHHHHHHHHHhhh--CCcEEEEEecC
Q 026011           97 DGKDVP-LS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCN  150 (245)
Q Consensus        97 ~G~~v~-l~-~~~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~--~g~~vv~Vs~D  150 (245)
                      +|+... ++ ...++++|+.|+.-.||+|....+.+..+.+....  .++.++...+.
T Consensus         5 eG~~y~~~~~p~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_           5 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCcEECCCCCCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            565433 33 24678899999999999999888777554443222  23677777654

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.01  Score=38.15  Aligned_cols=37  Identities=11%  Similarity=0.066  Sum_probs=28.9

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ++.|..++||+|.....-|.++..++.+  +.+.-+.++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEEecC
Confidence            4567889999999888888888777754  777777654

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.50  E-value=0.026  Score=38.73  Aligned_cols=93  Identities=22%  Similarity=0.234  Sum_probs=55.2

Q ss_pred             CCCCCCEEEEEEec-CCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccC
Q 026011          104 SKFKGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD  182 (245)
Q Consensus       104 ~~~~gk~vll~F~~-t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d  182 (245)
                      +.++..+.|+.|-. ..|+.|.....-|+++.+ +.++ +.+.-...+         ..+..+.+ ++|++         
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSdk-i~~~~~~~~---------~~e~~~~~-~~~~v---------   76 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTDK-LSYEIVDFD---------TPEGKELA-KRYRI---------   76 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCTT-EEEEEEETT---------SHHHHHHH-HHTTC---------
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHh-hCCC-eEEEEeccC---------cchhhhHH-Hhhcc---------
Confidence            44555555665553 679999976666666644 3444 666665543         33445555 56553         


Q ss_pred             CCCCCcchhhhhhhcccCCCCCCccccceeEEEECCC--CcEEEecCCCCChHHHHHHHHHHhh
Q 026011          183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN--GKVIERYPPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~--G~i~~~~~g~~~~~~l~~~l~~ll~  244 (245)
                                               ...|++.|.+..  ..|  +|.|...-.++...|..+++
T Consensus        77 -------------------------er~Ps~~i~~~g~~~gI--rF~GiP~GhEf~SlilaIl~  113 (119)
T d1a8la1          77 -------------------------DRAPATTITQDGKDFGV--RYFGLPAGHEFAAFLEDIVD  113 (119)
T ss_dssp             -------------------------CSSSEEEEEETTBCCSE--EEESCCCTTHHHHHHHHHHH
T ss_pred             -------------------------ccCceEEEecCCcccce--EEEeccCchhHHHHHHHHHH
Confidence                                     223887777642  235  55565566677777777663

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.07  E-value=0.12  Score=32.35  Aligned_cols=34  Identities=9%  Similarity=-0.016  Sum_probs=25.4

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEE
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF  147 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~V  147 (245)
                      |...++.|+.|.......++..+++. ...++.-|
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv   37 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELG-IDAEFEKI   37 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcC-CceEEEEe
Confidence            33458999999999888888877753 33667666

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.87  E-value=0.21  Score=37.95  Aligned_cols=38  Identities=13%  Similarity=0.235  Sum_probs=30.4

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       110 ~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .||=.|.+.||..|+..-..|.++.++   .++..|++.+|
T Consensus         7 aVVElFTSqgCssCPpAd~~L~~L~~~---~~Vi~La~HVd   44 (225)
T d2axoa1           7 GVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD   44 (225)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred             cEEEEeeCCCCCCCHHHHHHHHHhhCC---CCEEEEEeccc
Confidence            444467799999999999999998653   34899999986

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=94.71  E-value=0.038  Score=38.36  Aligned_cols=92  Identities=8%  Similarity=-0.018  Sum_probs=57.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .++++++.|+... .........+.++.++|+++ +.++.+..+        .   ....+ +.+++.            
T Consensus        22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k-i~Fv~vd~~--------~---~~~~l-~~~gl~------------   75 (133)
T d2djka1          22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV-INFGTIDAK--------A---FGAHA-GNLNLK------------   75 (133)
T ss_dssp             TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT-SEEEEECTT--------T---TGGGT-TTTTCC------------
T ss_pred             CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc-eEEEEEeHH--------H---hHHHH-HHhcCC------------
Confidence            4678777777543 34566778888999999876 777776432        1   11111 122211            


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEec--CCCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY--PPTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~--~g~~~~~~l~~~l~~ll~  244 (245)
                                          -...|.++|++.++...+.+  .+..+.+.+.+.++.+++
T Consensus        76 --------------------~~~~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~  115 (133)
T d2djka1          76 --------------------TDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             --------------------SSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             --------------------cccCCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHc
Confidence                                01128899998887765555  345588899999988764

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=93.24  E-value=0.056  Score=33.34  Aligned_cols=32  Identities=9%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|..+||++|......|.       +.|+.+.-+.+|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~-------~~~i~~~~~~i~   34 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALD-------RAGLAYNTVDIS   34 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTTCCCEEEETT
T ss_pred             EEEEeCCCChhHHHHHHHHH-------HcCCceEEEEcc
Confidence            45678899999997665553       356777777777

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.068  Score=33.18  Aligned_cols=32  Identities=9%  Similarity=0.307  Sum_probs=22.9

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      +..|..+||++|......|.       ++|+.+.-+.+|
T Consensus         3 i~iYs~~~C~~C~~ak~~L~-------~~~i~y~~~~i~   34 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAME-------NRGFDFEMINVD   34 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTTCCCEEEETT
T ss_pred             EEEEeCCCCccHHHHHHHHH-------hcCceeEEEeec
Confidence            35577899999997665553       356777777776

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.36  E-value=0.56  Score=31.81  Aligned_cols=91  Identities=10%  Similarity=0.024  Sum_probs=58.3

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHHHHhcCCCcceeeccCCCCC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP  186 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~d~~~~  186 (245)
                      .|+|+++.|+.+.-. -......+.++.++|+++ +.++.+..|           +....+ +.+|+.         .  
T Consensus        16 ~~~Pl~~~f~~~~~~-~~~~~~~~~~vAk~fkgk-i~Fv~~D~~-----------~~~~~l-~~fgl~---------e--   70 (125)
T d2b5ea3          16 SGLPLGYLFYNDEEE-LEEYKPLFTELAKKNRGL-MNFVSIDAR-----------KFGRHA-GNLNMK---------E--   70 (125)
T ss_dssp             TTSCEEEEEESSHHH-HHHHHHHHHHHHHHTTTT-CEEEEEEHH-----------HHTTHH-HHTTCC---------S--
T ss_pred             cCCCEEEEEeCChHH-HHHHHHHHHHHHHHhcCe-eEEEEEchH-----------HhHHHH-HHcCCC---------c--
Confidence            578988888865322 235668888899999887 788877533           222333 444431         0  


Q ss_pred             CcchhhhhhhcccCCCCCCccccceeEEEECCCCcEEEecC-------------CCCChHHHHHHHHHHhh
Q 026011          187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP-------------PTTSPFQIEKDIQKLVV  244 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~liD~~G~i~~~~~-------------g~~~~~~l~~~l~~ll~  244 (245)
                                            ..|.+.+++.++.-.+...             +..+.+.|.+.++..++
T Consensus        71 ----------------------~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          71 ----------------------QFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             ----------------------CSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             ----------------------cCCcEEEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence                                  0177777776665555542             45688899999988764

>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Phenol hydroxylase, C-terminal domain
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.65  E-value=0.48  Score=35.17  Aligned_cols=42  Identities=12%  Similarity=0.106  Sum_probs=34.3

Q ss_pred             cccccccCcccCeEEEc-CCCCeeecCCC---CCCEEEEEEecCCC
Q 026011           79 HATAATEKSLYDFTVKD-IDGKDVPLSKF---KGKVLLIVNVASRC  120 (245)
Q Consensus        79 ~~~~~~g~~~pdf~l~~-~~G~~v~l~~~---~gk~vll~F~~t~C  120 (245)
                      ...+.+|..+|+..+.. .||+++.|.+.   .|++-|+.|-+...
T Consensus        14 A~~~~iG~R~~sa~V~R~aDa~p~~L~~~~~adGrfrI~vFaGd~~   59 (201)
T d1pn0a2          14 AKNCVVGTRFKSQPVVRHSEGLWMHFGDRLVTDGRFRIIVFAGKAT   59 (201)
T ss_dssp             BTTSCTTSBCCCCEEEETTTTEEEEGGGGCCCSSCEEEEEEEECTT
T ss_pred             hcCCCCceecCCceEEEecCCCEeehhccccCCCcEEEEEEecCCC
Confidence            35577999999999998 69999999764   78999998876543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.45  E-value=0.063  Score=35.72  Aligned_cols=47  Identities=19%  Similarity=0.291  Sum_probs=27.2

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA  167 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D~~~~~~~~~~~~~~~~~  167 (245)
                      ++.|..+|||+|......|.++.-++  ..+.++-+..+       .+.+.+++++
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~--~~~~~~e~d~~-------~d~~~~~~~l   60 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE--GLLEFVDITAT-------SDTNEIQDYL   60 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT--TSEEEEEGGGS-------TTHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc--ceeeeeecccc-------cccHHHHHHH
Confidence            34588999999997766665432222  12445555443       2345555555

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=89.41  E-value=0.15  Score=31.22  Aligned_cols=32  Identities=9%  Similarity=0.177  Sum_probs=22.1

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |+.|..++||+|......|.+       .|+....+.+|
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~-------~~i~~~~~~v~   38 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHD-------KGLSFEEIILG   38 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCCEEEETT
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCeEEEEcc
Confidence            345789999999977665544       34666666665

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=88.29  E-value=1.5  Score=26.78  Aligned_cols=32  Identities=9%  Similarity=0.158  Sum_probs=20.7

Q ss_pred             EEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       113 l~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      ..|...+|+.|......|.+      ..++++.-|.++
T Consensus         3 tLyt~~~C~LCe~A~~~l~~------~~~~~~~~vdI~   34 (75)
T d1ttza_           3 TLYQRDDCHLCDQAVEALAQ------ARAGAFFSVFID   34 (75)
T ss_dssp             EEEECSSCHHHHHHHHHHHH------TTCCCEEEEECT
T ss_pred             EEECCCCccHHHHHHHHHHh------ccCCcEEEEEcc
Confidence            44678999999755433322      235777777776

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=88.04  E-value=0.43  Score=29.65  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHHHhhhCCcEEEEEecC
Q 026011          112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       112 ll~F~~t~C~~C~~~~~~l~~l~~~~~~~g~~vv~Vs~D  150 (245)
                      |..|..+|||+|......|.+       .|+.+.-+.+|
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~-------~~i~y~~~di~   34 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSS-------KGVSFQELPID   34 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCCEEEECT
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------cCCCeEEEecc
Confidence            345678999999966555533       35666666665

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=87.98  E-value=0.032  Score=41.73  Aligned_cols=43  Identities=14%  Similarity=0.151  Sum_probs=32.8

Q ss_pred             CCCEEEEEEecCCCCCChHHHHHHH---HHHHHhhhCCcEEEEEecC
Q 026011          107 KGKVLLIVNVASRCGLTPSNYSELS---HLYEKYKTQGFEILAFPCN  150 (245)
Q Consensus       107 ~gk~vll~F~~t~C~~C~~~~~~l~---~l~~~~~~~g~~vv~Vs~D  150 (245)
                      .+++.|+.|+.-+||+|...-+.|.   ++.+.+++ ++.++.+.+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC-CcEEEEEecC
Confidence            5788899999999999999888764   56666654 3777776653